Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene40606.t1 | AES72904.2 | 97.7 | 511 | 5 | 1 | 1 | 504 | 182 | 692 | 2.40E-301 | 1043.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene40606.t1 | Q9LVP1 | 73.4 | 512 | 128 | 1 | 1 | 504 | 184 | 695 | 2.1e-229 | 796.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene40606.t1 | G7JC55 | 97.7 | 511 | 5 | 1 | 1 | 504 | 182 | 692 | 1.8e-301 | 1043.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049251 | MS.gene40606 | 0.859133 | 5.10E-63 | -1.69E-46 |
MS.gene049596 | MS.gene40606 | 0.812879 | 3.40E-51 | -1.69E-46 |
MS.gene05124 | MS.gene40606 | 0.824233 | 9.02E-54 | -1.69E-46 |
MS.gene051914 | MS.gene40606 | 0.800369 | 1.49E-48 | -1.69E-46 |
MS.gene053173 | MS.gene40606 | 0.824092 | 9.73E-54 | -1.69E-46 |
MS.gene054551 | MS.gene40606 | 0.811376 | 7.22E-51 | -1.69E-46 |
MS.gene054593 | MS.gene40606 | 0.809726 | 1.64E-50 | -1.69E-46 |
MS.gene06093 | MS.gene40606 | 0.803641 | 3.16E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene40606.t1 | MTR_3g096640 | 97.652 | 511 | 5 | 1 | 1 | 504 | 182 | 692 | 0.0 | 1045 |
MS.gene40606.t1 | MTR_5g061930 | 40.191 | 418 | 224 | 11 | 1 | 401 | 26 | 434 | 1.07e-89 | 281 |
MS.gene40606.t1 | MTR_3g084800 | 32.181 | 463 | 285 | 9 | 1 | 454 | 114 | 556 | 2.97e-70 | 239 |
MS.gene40606.t1 | MTR_3g084800 | 32.181 | 463 | 285 | 9 | 1 | 454 | 174 | 616 | 7.23e-70 | 239 |
MS.gene40606.t1 | MTR_5g061940 | 35.294 | 170 | 94 | 5 | 1 | 160 | 138 | 301 | 9.87e-23 | 99.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene40606.t1 | AT5G63920 | 73.438 | 512 | 128 | 1 | 1 | 504 | 184 | 695 | 0.0 | 796 |
MS.gene40606.t1 | AT2G32000 | 34.932 | 438 | 264 | 6 | 1 | 431 | 152 | 575 | 2.83e-72 | 245 |
MS.gene40606.t1 | AT2G32000 | 34.932 | 438 | 264 | 6 | 1 | 431 | 179 | 602 | 3.39e-72 | 246 |
Find 0 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
24175 | gene | 550 | 9276 | 550 | ID=MS.gene40606 |
24175 | mRNA | 550 | 9276 | 550 | ID=MS.gene40606.t1;Parent=MS.gene40606 |
24175 | exon | 9154 | 9276 | 9154 | ID=MS.gene40606.t1.exon1;Parent=MS.gene40606.t1 |
24175 | CDS | 9154 | 9276 | 9154 | ID=cds.MS.gene40606.t1;Parent=MS.gene40606.t1 |
24175 | exon | 8940 | 9061 | 8940 | ID=MS.gene40606.t1.exon2;Parent=MS.gene40606.t1 |
24175 | CDS | 8940 | 9061 | 8940 | ID=cds.MS.gene40606.t1;Parent=MS.gene40606.t1 |
24175 | exon | 8788 | 8860 | 8788 | ID=MS.gene40606.t1.exon3;Parent=MS.gene40606.t1 |
24175 | CDS | 8788 | 8860 | 8788 | ID=cds.MS.gene40606.t1;Parent=MS.gene40606.t1 |
24175 | exon | 8588 | 8683 | 8588 | ID=MS.gene40606.t1.exon4;Parent=MS.gene40606.t1 |
24175 | CDS | 8588 | 8683 | 8588 | ID=cds.MS.gene40606.t1;Parent=MS.gene40606.t1 |
24175 | exon | 7946 | 8029 | 7946 | ID=MS.gene40606.t1.exon5;Parent=MS.gene40606.t1 |
24175 | CDS | 7946 | 8029 | 7946 | ID=cds.MS.gene40606.t1;Parent=MS.gene40606.t1 |
24175 | exon | 7003 | 7182 | 7003 | ID=MS.gene40606.t1.exon6;Parent=MS.gene40606.t1 |
24175 | CDS | 7003 | 7182 | 7003 | ID=cds.MS.gene40606.t1;Parent=MS.gene40606.t1 |
24175 | exon | 6773 | 6901 | 6773 | ID=MS.gene40606.t1.exon7;Parent=MS.gene40606.t1 |
24175 | CDS | 6773 | 6901 | 6773 | ID=cds.MS.gene40606.t1;Parent=MS.gene40606.t1 |
24175 | exon | 5997 | 6071 | 5997 | ID=MS.gene40606.t1.exon8;Parent=MS.gene40606.t1 |
24175 | CDS | 5997 | 6071 | 5997 | ID=cds.MS.gene40606.t1;Parent=MS.gene40606.t1 |
24175 | exon | 5101 | 5190 | 5101 | ID=MS.gene40606.t1.exon9;Parent=MS.gene40606.t1 |
24175 | CDS | 5101 | 5190 | 5101 | ID=cds.MS.gene40606.t1;Parent=MS.gene40606.t1 |
24175 | exon | 4890 | 4994 | 4890 | ID=MS.gene40606.t1.exon10;Parent=MS.gene40606.t1 |
24175 | CDS | 4890 | 4994 | 4890 | ID=cds.MS.gene40606.t1;Parent=MS.gene40606.t1 |
24175 | exon | 4087 | 4121 | 4087 | ID=MS.gene40606.t1.exon11;Parent=MS.gene40606.t1 |
24175 | CDS | 4087 | 4121 | 4087 | ID=cds.MS.gene40606.t1;Parent=MS.gene40606.t1 |
24175 | exon | 2573 | 2702 | 2573 | ID=MS.gene40606.t1.exon12;Parent=MS.gene40606.t1 |
24175 | CDS | 2573 | 2702 | 2573 | ID=cds.MS.gene40606.t1;Parent=MS.gene40606.t1 |
24175 | exon | 1731 | 1783 | 1731 | ID=MS.gene40606.t1.exon13;Parent=MS.gene40606.t1 |
24175 | CDS | 1731 | 1783 | 1731 | ID=cds.MS.gene40606.t1;Parent=MS.gene40606.t1 |
24175 | exon | 1557 | 1656 | 1557 | ID=MS.gene40606.t1.exon14;Parent=MS.gene40606.t1 |
24175 | CDS | 1557 | 1656 | 1557 | ID=cds.MS.gene40606.t1;Parent=MS.gene40606.t1 |
24175 | exon | 1123 | 1161 | 1123 | ID=MS.gene40606.t1.exon15;Parent=MS.gene40606.t1 |
24175 | CDS | 1123 | 1161 | 1123 | ID=cds.MS.gene40606.t1;Parent=MS.gene40606.t1 |
24175 | exon | 550 | 628 | 550 | ID=MS.gene40606.t1.exon16;Parent=MS.gene40606.t1 |
24175 | CDS | 550 | 628 | 550 | ID=cds.MS.gene40606.t1;Parent=MS.gene40606.t1 |
Gene Sequence |
Protein sequence |