AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene049596


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049596.t1 MTR_3g062490 96.305 433 16 0 1 433 1 433 0.0 878
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049596.t1 AT5G41880 66.898 432 142 1 3 433 20 451 0.0 625

Find 93 sgRNAs with CRISPR-Local

Find 354 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCTGCAACTTTAAATTAT+AGG 0.152070 3.2:-58693323 None:intergenic
CTGATGTTTGCTTGGATTGC+TGG 0.175005 3.2:+58688680 MS.gene049596:CDS
GTAATATGGTTTGAGAAAAT+TGG 0.179480 3.2:-58687793 None:intergenic
TGCTGCTCTTCATCCTTTCT+TGG 0.219140 3.2:+58690272 MS.gene049596:CDS
CTTATGCTGATATATTTAAA+TGG 0.242848 3.2:+58687957 MS.gene049596:CDS
TCAAACTCGTCGCACCGATT+TGG 0.308608 3.2:-58692032 None:intergenic
CTTCTGAACTTAGGGGAAAA+TGG 0.309145 3.2:+58690578 MS.gene049596:CDS
ATATTTAAATGGATGTCTTA+TGG 0.313114 3.2:+58687968 MS.gene049596:CDS
GGTCCAATGTCAATCTTTAA+AGG 0.318846 3.2:-58688216 None:intergenic
GGATGTAACTAACCGTAATA+TGG 0.322356 3.2:-58687807 None:intergenic
CAAACTCGTCGCACCGATTT+GGG 0.324581 3.2:-58692031 None:intergenic
CAGCTGTTGCTTCTGAACTT+AGG 0.327727 3.2:+58690569 MS.gene049596:intron
CAAGGGTGCTGATGTTTGCT+TGG 0.351983 3.2:+58688672 MS.gene049596:CDS
TGCATAAATTTACCTGGAAA+AGG 0.360793 3.2:-58692073 None:intergenic
AGCTGTTGCTTCTGAACTTA+GGG 0.372658 3.2:+58690570 MS.gene049596:intron
CAAGGGCATTGTTGTAAGAT+TGG 0.376905 3.2:-58688164 None:intergenic
AAAATCAACTCCCTCTCAAC+TGG 0.382678 3.2:-58688502 None:intergenic
ATGTGGTTCAGCCTGCAAAA+AGG 0.392955 3.2:+58688443 MS.gene049596:intron
TGCAAGCAGTTGTTGCAATC+TGG 0.396731 3.2:+58690661 MS.gene049596:CDS
TCATAAGAAGGTTTCTTTGA+TGG 0.398817 3.2:+58690248 MS.gene049596:CDS
TACTTACCCCAGGCTAGATA+TGG 0.399800 3.2:+58691478 MS.gene049596:CDS
GGAAGAATCAATCACTTTGA+TGG 0.406439 3.2:-58688719 None:intergenic
GGGGAAAATGGCAAGACAAT+AGG 0.421032 3.2:+58690590 MS.gene049596:CDS
TTCATTGTTGGGTGTGTGAT+GGG 0.424472 3.2:+58689800 MS.gene049596:CDS
CATAAGAAGGTTTCTTTGAT+GGG 0.427571 3.2:+58690249 MS.gene049596:CDS
TCGCACCGATTTGGGTCAAT+AGG 0.440085 3.2:-58692023 None:intergenic
CTAGATGAGCTTAATAATGA+AGG 0.443170 3.2:+58692370 MS.gene049596:CDS
GGCTGTGATCAGTCCTACTT+TGG 0.450382 3.2:+58688093 MS.gene049596:CDS
GTCCAATGTCAATCTTTAAA+GGG 0.452622 3.2:-58688215 None:intergenic
GACGAAGAGGTGTTCATTGT+TGG 0.457076 3.2:+58689788 MS.gene049596:CDS
GCATAAATTTACCTGGAAAA+GGG 0.457809 3.2:-58692072 None:intergenic
AAATGTAATGTACATTCATC+AGG 0.458206 3.2:-58690472 None:intergenic
GGCTTGAGAGCTGATGTTAA+TGG 0.464362 3.2:+58692391 MS.gene049596:CDS
CACATACTCTGGGTCTATAG+TGG 0.465375 3.2:+58689766 MS.gene049596:CDS
ACTACTGTTTCAGATGACTT+TGG 0.467950 3.2:+58689736 MS.gene049596:intron
AAATTCCCTTCTTCCAAAGT+AGG 0.470331 3.2:-58688106 None:intergenic
GTTGCAATCTGGAAAACATA+AGG 0.478385 3.2:+58690672 MS.gene049596:CDS
GTTCATTGTTGGGTGTGTGA+TGG 0.479437 3.2:+58689799 MS.gene049596:CDS
ATTATTATCGCTTTGTGCAT+AGG 0.480957 3.2:-58688470 None:intergenic
ATCAATCACTTTGATGGCTA+TGG 0.483305 3.2:-58688713 None:intergenic
ATCAGTCCTACTTTGGAAGA+AGG 0.484427 3.2:+58688100 MS.gene049596:CDS
ACAGACCTCCATATCTAGCC+TGG 0.488928 3.2:-58691486 None:intergenic
TGCCCTTTAAAGATTGACAT+TGG 0.495107 3.2:+58688213 MS.gene049596:CDS
ACGAAGAGGTGTTCATTGTT+GGG 0.495453 3.2:+58689789 MS.gene049596:CDS
GAATGGAGTGGAACTTCCCT+TGG 0.497327 3.2:+58692967 MS.gene049596:intron
CTCAAGACTTACGCCAAGAA+AGG 0.498182 3.2:-58690285 None:intergenic
ATTGTAGATGGGAAACATCC+TGG 0.501473 3.2:+58688072 MS.gene049596:intron
CATTTAAATATATCAGCATA+AGG 0.502545 3.2:-58687956 None:intergenic
TTGGCTTCAAGCACATACTC+TGG 0.507696 3.2:+58689755 MS.gene049596:CDS
CAAACTCAGAATCTTGTTGT+GGG 0.516943 3.2:-58687767 None:intergenic
ATTCATCAGGAATCATGCTT+AGG 0.517226 3.2:-58690459 None:intergenic
TGTGTGATGGGAAGGCTAGA+AGG 0.517538 3.2:+58689812 MS.gene049596:CDS
GTGTTCCTATTGACCCAAAT+CGG 0.520731 3.2:+58692018 MS.gene049596:CDS
TGCATTGCACTACCAACCTA+TGG 0.526014 3.2:-58693356 None:intergenic
AAAAGGGTGGGTACTGTGGT+AGG 0.526266 3.2:-58692056 None:intergenic
ACGCAAATTACTACCTCTCA+AGG 0.539006 3.2:-58688740 None:intergenic
AGATATTAATGTTGTGCGGT+GGG 0.549249 3.2:+58690633 MS.gene049596:CDS
CAATGAAAATAGTCATAAGA+AGG 0.549770 3.2:+58690236 MS.gene049596:CDS
TTGATGGCTATGGTCATCAA+TGG 0.552196 3.2:-58688703 None:intergenic
TCAAACTCAGAATCTTGTTG+TGG 0.556258 3.2:-58687768 None:intergenic
CAGACCTCCATATCTAGCCT+GGG 0.557133 3.2:-58691485 None:intergenic
GTTACATCGACTGTGTAGAC+AGG 0.559275 3.2:-58688237 None:intergenic
AAATGGATGTCTTATGGCAA+CGG 0.560209 3.2:+58687974 MS.gene049596:CDS
TTGTTGGGTGTGTGATGGGA+AGG 0.560818 3.2:+58689804 MS.gene049596:CDS
TACTGCAGGAGGAGATAGAA+AGG 0.563804 3.2:+58693299 MS.gene049596:intron
AAGATATTAATGTTGTGCGG+TGG 0.564243 3.2:+58690632 MS.gene049596:CDS
TGGCTTCAAGCACATACTCT+GGG 0.565334 3.2:+58689756 MS.gene049596:CDS
AAAGCGTAACTGAGTTTCCA+AGG 0.568628 3.2:-58692984 None:intergenic
TAAATTTACCTGGAAAAGGG+TGG 0.571443 3.2:-58692069 None:intergenic
GTGATTGATTCTTCCTTGAG+AGG 0.573001 3.2:+58688727 MS.gene049596:CDS
AAAGTCATCGTTCAAAGTGA+AGG 0.573086 3.2:-58688130 None:intergenic
AAAATAGTCCTTGAGAACAT+TGG 0.578336 3.2:-58690377 None:intergenic
ATCATACACCAATGTTCTCA+AGG 0.579918 3.2:+58690369 MS.gene049596:CDS
TCAGTCCTACTTTGGAAGAA+GGG 0.583160 3.2:+58688101 MS.gene049596:CDS
TGTTCTGCTATACTTACCCC+AGG 0.586755 3.2:+58691468 MS.gene049596:CDS
CAGCAGTCAAAGAACTCCAT+AGG 0.587531 3.2:+58693340 MS.gene049596:CDS
AAGTAGGACTGATCACAGCC+AGG 0.597622 3.2:-58688090 None:intergenic
CTGGAAAAGGGTGGGTACTG+TGG 0.601068 3.2:-58692060 None:intergenic
TGTCTTCACTCCAGTTGAGA+GGG 0.602905 3.2:+58688492 MS.gene049596:CDS
ATGTCTTCACTCCAGTTGAG+AGG 0.606406 3.2:+58688491 MS.gene049596:CDS
AGTCAAAGAACTCCATAGGT+TGG 0.606427 3.2:+58693344 MS.gene049596:CDS
TTACCCCAGGCTAGATATGG+AGG 0.628406 3.2:+58691481 MS.gene049596:CDS
AAATTTACCTGGAAAAGGGT+GGG 0.629339 3.2:-58692068 None:intergenic
TCAAAACTTACTCGCTACTG+AGG 0.630959 3.2:+58690420 MS.gene049596:CDS
GCTGTTGCTTCTGAACTTAG+GGG 0.640099 3.2:+58690571 MS.gene049596:intron
GATGTCAGATACTGCTGCAA+GGG 0.646848 3.2:+58688655 MS.gene049596:CDS
AAGCGTAACTGAGTTTCCAA+GGG 0.661590 3.2:-58692983 None:intergenic
AAGAAGATATTAATGTTGTG+CGG 0.661821 3.2:+58690629 MS.gene049596:CDS
TGGGTCTATAGTGGACGAAG+AGG 0.693990 3.2:+58689775 MS.gene049596:CDS
TGATGTCAGATACTGCTGCA+AGG 0.695095 3.2:+58688654 MS.gene049596:CDS
AGACCTCCATATCTAGCCTG+GGG 0.714360 3.2:-58691484 None:intergenic
TGTTTGGTAGCAGAATGGAG+TGG 0.725763 3.2:+58692955 MS.gene049596:intron
TTGAGAGCTGATGTTAATGG+TGG 0.727071 3.2:+58692394 MS.gene049596:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAGAATAAATATGATTA+TGG - chr3.2:58691218-58691237 None:intergenic 10.0%
!!! TCTTTTTTTCTTTTTTTTTT+TGG - chr3.2:58690121-58690140 None:intergenic 10.0%
!! AAAGAGAAAAAAATAAAAGA+GGG - chr3.2:58688602-58688621 None:intergenic 15.0%
!! AATAAAAATTGCAAATGTTT+AGG - chr3.2:58692455-58692474 None:intergenic 15.0%
!! TGATATATAGATACATATTT+GGG - chr3.2:58691600-58691619 None:intergenic 15.0%
!! TTGATATATAGATACATATT+TGG - chr3.2:58691601-58691620 None:intergenic 15.0%
!!! AAGGTATAAAATATTCTTTT+TGG + chr3.2:58690691-58690710 MS.gene049596:intron 15.0%
!!! AATTATTATAGATGGTTTTA+GGG - chr3.2:58689575-58689594 None:intergenic 15.0%
!!! AGACTTAATTTTTAAAAAAC+AGG + chr3.2:58688821-58688840 MS.gene049596:intron 15.0%
!!! AGGTATAAAATATTCTTTTT+GGG + chr3.2:58690692-58690711 MS.gene049596:intron 15.0%
!!! TAATTATTATAGATGGTTTT+AGG - chr3.2:58689576-58689595 None:intergenic 15.0%
!!! TATTATTTATATGCTTGTTA+AGG - chr3.2:58690947-58690966 None:intergenic 15.0%
!!! TTGTTTATTTATTTAAGATG+AGG + chr3.2:58691122-58691141 MS.gene049596:intron 15.0%
!!! TTTGAAACATATTTAAGAAT+GGG + chr3.2:58692585-58692604 MS.gene049596:intron 15.0%
!!! TTTTATTTTTTTCTCTTTCA+TGG + chr3.2:58688604-58688623 MS.gene049596:intron 15.0%
!!! TTTTGAAACATATTTAAGAA+TGG + chr3.2:58692584-58692603 MS.gene049596:intron 15.0%
!! AACCACATAAAAATTGATTA+GGG - chr3.2:58688431-58688450 None:intergenic 20.0%
!! AACTTATGAATATACAACTT+TGG - chr3.2:58690908-58690927 None:intergenic 20.0%
!! AATCAACAAACATTAATACA+TGG - chr3.2:58690199-58690218 None:intergenic 20.0%
!! AGATTAATTTCCATATTACT+TGG + chr3.2:58691086-58691105 MS.gene049596:intron 20.0%
!! ATATATAGATACATATTTGG+GGG - chr3.2:58691598-58691617 None:intergenic 20.0%
!! ATATTTAAATGGATGTCTTA+TGG + chr3.2:58687968-58687987 MS.gene049596:CDS 20.0%
!! ATCAACAAACATTAATACAT+GGG - chr3.2:58690198-58690217 None:intergenic 20.0%
!! ATGATATTAACCAAGTAATA+TGG - chr3.2:58691099-58691118 None:intergenic 20.0%
!! CACAATAATACTGAATTATA+GGG - chr3.2:58688275-58688294 None:intergenic 20.0%
!! CATTTAAATATATCAGCATA+AGG - chr3.2:58687959-58687978 None:intergenic 20.0%
!! CCTTCTATAAATTCTTAAAA+GGG - chr3.2:58692822-58692841 None:intergenic 20.0%
!! CGTAAATGAAAATAACTTAA+TGG - chr3.2:58691561-58691580 None:intergenic 20.0%
!! CTCAATCTAATTATTATAGA+TGG - chr3.2:58689583-58689602 None:intergenic 20.0%
!! CTTATGCTGATATATTTAAA+TGG + chr3.2:58687957-58687976 MS.gene049596:CDS 20.0%
!! CTTCTATAAATTCTTAAAAG+GGG - chr3.2:58692821-58692840 None:intergenic 20.0%
!! CTTTCATTTATTTAAAAGAG+AGG - chr3.2:58689004-58689023 None:intergenic 20.0%
!! GAAAGAGAAAAAAATAAAAG+AGG - chr3.2:58688603-58688622 None:intergenic 20.0%
!! GATATATAGATACATATTTG+GGG - chr3.2:58691599-58691618 None:intergenic 20.0%
!! GATTCCTATTTGAATATTTA+TGG + chr3.2:58689189-58689208 MS.gene049596:intron 20.0%
!! TATATTATCTTTACTATTGC+AGG + chr3.2:58689904-58689923 MS.gene049596:intron 20.0%
!! TATTAAATCTATCTTCTCTT+TGG + chr3.2:58691889-58691908 MS.gene049596:intron 20.0%
!! TTAAACGCAAAAATTTAGAT+TGG - chr3.2:58691658-58691677 None:intergenic 20.0%
!! TTGAAACATATTTAAGAATG+GGG + chr3.2:58692586-58692605 MS.gene049596:intron 20.0%
!!! AAACTAGTCAAAAGTATTAT+TGG - chr3.2:58691627-58691646 None:intergenic 20.0%
!!! AATTTTCTCAAACCATATTA+CGG + chr3.2:58687795-58687814 MS.gene049596:CDS 20.0%
!!! AGTCTTGTATTTCTATAAAT+AGG + chr3.2:58691145-58691164 MS.gene049596:intron 20.0%
!!! CTTGATAATGAATTTTGTTT+TGG + chr3.2:58689712-58689731 MS.gene049596:intron 20.0%
!!! GTCTTGTATTTCTATAAATA+GGG + chr3.2:58691146-58691165 MS.gene049596:intron 20.0%
! AAAATTGATTAGGGGAAAAA+TGG - chr3.2:58688422-58688441 None:intergenic 25.0%
! AAATGTAATGTACATTCATC+AGG - chr3.2:58690475-58690494 None:intergenic 25.0%
! AACATCTCAATTTAACAATC+TGG + chr3.2:58691254-58691273 MS.gene049596:intron 25.0%
! AAGAAGATATTAATGTTGTG+CGG + chr3.2:58690629-58690648 MS.gene049596:CDS 25.0%
! AATAAGCATTAGAAGATATG+AGG - chr3.2:58692903-58692922 None:intergenic 25.0%
! AATGAAAAGGATTTGCAAAA+TGG - chr3.2:58692873-58692892 None:intergenic 25.0%
! ACCACATAAAAATTGATTAG+GGG - chr3.2:58688430-58688449 None:intergenic 25.0%
! ACGACAATATATAGGAAAAA+GGG - chr3.2:58692222-58692241 None:intergenic 25.0%
! AGAAAATAAGAGAAAACGTA+TGG - chr3.2:58687916-58687935 None:intergenic 25.0%
! AGCAGTAAAATGAAATAACA+AGG - chr3.2:58690518-58690537 None:intergenic 25.0%
! ATAAGCATTAGAAGATATGA+GGG - chr3.2:58692902-58692921 None:intergenic 25.0%
! ATGCTTAACTGAAATTAAGA+TGG + chr3.2:58689509-58689528 MS.gene049596:intron 25.0%
! ATGTTACAAATCACAATATC+AGG - chr3.2:58692342-58692361 None:intergenic 25.0%
! ATTACCAACAATAGTTATGA+TGG - chr3.2:58693276-58693295 None:intergenic 25.0%
! ATTTGCAAAATGGAAATGTA+GGG - chr3.2:58692863-58692882 None:intergenic 25.0%
! CAATGAAAATAGTCATAAGA+AGG + chr3.2:58690236-58690255 MS.gene049596:CDS 25.0%
! CATGTATAGAAGACTTAATA+GGG + chr3.2:58692484-58692503 MS.gene049596:intron 25.0%
! CCTACCATAAATATTCAAAT+AGG - chr3.2:58689196-58689215 None:intergenic 25.0%
! CCTATTTGAATATTTATGGT+AGG + chr3.2:58689193-58689212 MS.gene049596:intron 25.0%
! GAACCACATAAAAATTGATT+AGG - chr3.2:58688432-58688451 None:intergenic 25.0%
! GAAGATATTGATATGCTTAA+AGG - chr3.2:58692264-58692283 None:intergenic 25.0%
! GCACAATAATACTGAATTAT+AGG - chr3.2:58688276-58688295 None:intergenic 25.0%
! GCCTTCTATAAATTCTTAAA+AGG - chr3.2:58692823-58692842 None:intergenic 25.0%
! GGATGTTTACATTTATTACT+TGG + chr3.2:58692166-58692185 MS.gene049596:intron 25.0%
! GGTGTAAAATAATTGTAGAT+GGG + chr3.2:58688061-58688080 MS.gene049596:intron 25.0%
! GGTGTAATATAATTGAGAAT+AGG - chr3.2:58691197-58691216 None:intergenic 25.0%
! GTAATATGGTTTGAGAAAAT+TGG - chr3.2:58687796-58687815 None:intergenic 25.0%
! TATACTAAGTAACAACTAGT+GGG + chr3.2:58689982-58690001 MS.gene049596:intron 25.0%
! TATATAGATACATATTTGGG+GGG - chr3.2:58691597-58691616 None:intergenic 25.0%
! TATTGTTGCATAAATTTACC+TGG - chr3.2:58692082-58692101 None:intergenic 25.0%
! TGCAATATTTGTACAAATAG+TGG + chr3.2:58690754-58690773 MS.gene049596:intron 25.0%
! TGGTAATTCTTCTTTATTCT+AGG + chr3.2:58691987-58692006 MS.gene049596:intron 25.0%
! TGTTTAAGTGCATAATTACT+TGG + chr3.2:58691967-58691986 MS.gene049596:intron 25.0%
! TTACATTTATTACTTGGAGT+AGG + chr3.2:58692172-58692191 MS.gene049596:intron 25.0%
! TTAGAATACAAAGGTAACAA+TGG + chr3.2:58690720-58690739 MS.gene049596:intron 25.0%
!! ATACTCTAAAGATAAGAAAC+TGG - chr3.2:58691060-58691079 None:intergenic 25.0%
!! ATTTGATACTAACCTGTTTT+CGG - chr3.2:58691750-58691769 None:intergenic 25.0%
!! CTCTAACAATCTCTTTTATT+GGG + chr3.2:58688899-58688918 MS.gene049596:intron 25.0%
!! TAATAGGGATATTGCATTTT+TGG + chr3.2:58692499-58692518 MS.gene049596:intron 25.0%
!! TCTCTAACAATCTCTTTTAT+TGG + chr3.2:58688898-58688917 MS.gene049596:intron 25.0%
!! TCTTTGCATAGTTTTCATTA+GGG + chr3.2:58692145-58692164 MS.gene049596:intron 25.0%
!! TTCTTTTATAGAGAAATGCT+AGG + chr3.2:58688854-58688873 MS.gene049596:intron 25.0%
!! TTTTCTGTCTGAAAAATCAT+AGG - chr3.2:58691863-58691882 None:intergenic 25.0%
!!! AGTGATTTTGATACATTGTT+TGG + chr3.2:58692939-58692958 MS.gene049596:intron 25.0%
!!! ATTTTTTTCTCTTTCATGGT+CGG + chr3.2:58688608-58688627 MS.gene049596:intron 25.0%
!!! CCCTTTTAAGAATTTATAGA+AGG + chr3.2:58692819-58692838 MS.gene049596:intron 25.0%
!!! TATTTAAGAGTATTTCCACT+AGG - chr3.2:58689048-58689067 None:intergenic 25.0%
!!! TTTTTTATTTGCAACAGAGA+TGG + chr3.2:58692106-58692125 MS.gene049596:intron 25.0%
AAAAATGTTTCATACCTTGC+AGG - chr3.2:58693043-58693062 None:intergenic 30.0%
AAAATAAGCTCAATCCAAAC+AGG - chr3.2:58690820-58690839 None:intergenic 30.0%
AAAATAGTCCTTGAGAACAT+TGG - chr3.2:58690380-58690399 None:intergenic 30.0%
AATGAATTCAATGACCAGAT+AGG - chr3.2:58689606-58689625 None:intergenic 30.0%
ACCAAGACTATTTATGTTTC+AGG + chr3.2:58691677-58691696 MS.gene049596:intron 30.0%
ACCTGAAACATAAATAGTCT+TGG - chr3.2:58691681-58691700 None:intergenic 30.0%
AGAAGGCTTAGTTTATAAGT+TGG + chr3.2:58692836-58692855 MS.gene049596:intron 30.0%
AGAGTAAAATTCTCAATCCT+CGG - chr3.2:58689461-58689480 None:intergenic 30.0%
AGATAAACTAAGAACCAAGT+AGG - chr3.2:58691023-58691042 None:intergenic 30.0%
AGTATCTAAAAACTTTCAGC+AGG - chr3.2:58688558-58688577 None:intergenic 30.0%
ATAATTAGATTGAGCCTATC+TGG + chr3.2:58689589-58689608 MS.gene049596:intron 30.0%
ATAGAAGTCAAGAGCAATAA+GGG + chr3.2:58690794-58690813 MS.gene049596:intron 30.0%
ATCAAGATATCAGTGACATT+GGG - chr3.2:58689698-58689717 None:intergenic 30.0%
ATGTTCAATACCATATGCTA+CGG - chr3.2:58689392-58689411 None:intergenic 30.0%
ATTATTATCGCTTTGTGCAT+AGG - chr3.2:58688473-58688492 None:intergenic 30.0%
CAAATGTTTAGGAATCAAAC+GGG - chr3.2:58692444-58692463 None:intergenic 30.0%
CACGACAATATATAGGAAAA+AGG - chr3.2:58692223-58692242 None:intergenic 30.0%
CATAAGAAGGTTTCTTTGAT+GGG + chr3.2:58690249-58690268 MS.gene049596:CDS 30.0%
CATGATGAAAAATCAGAACT+GGG - chr3.2:58689425-58689444 None:intergenic 30.0%
CATGTTTAAACGAGAAACAA+AGG - chr3.2:58693146-58693165 None:intergenic 30.0%
CCATGTATAGAAGACTTAAT+AGG + chr3.2:58692483-58692502 MS.gene049596:intron 30.0%
CCTATTAAGTCTTCTATACA+TGG - chr3.2:58692486-58692505 None:intergenic 30.0%
CGACAATATATAGGAAAAAG+GGG - chr3.2:58692221-58692240 None:intergenic 30.0%
CTAAAATAAGCCAATCCAAA+CGG + chr3.2:58690995-58691014 MS.gene049596:intron 30.0%
CTAGATGAGCTTAATAATGA+AGG + chr3.2:58692370-58692389 MS.gene049596:CDS 30.0%
CTATCCATCATAACTATTGT+TGG + chr3.2:58693269-58693288 MS.gene049596:intron 30.0%
CTGCTGCAACTTTAAATTAT+AGG - chr3.2:58693326-58693345 None:intergenic 30.0%
GAGTAAATATCATGAAGTGA+AGG - chr3.2:58689351-58689370 None:intergenic 30.0%
GATAAACTAAGAACCAAGTA+GGG - chr3.2:58691022-58691041 None:intergenic 30.0%
GATATTGATATGCTTAAAGG+TGG - chr3.2:58692261-58692280 None:intergenic 30.0%
GATTTGCAAAATGGAAATGT+AGG - chr3.2:58692864-58692883 None:intergenic 30.0%
GCAAATGTTTAGGAATCAAA+CGG - chr3.2:58692445-58692464 None:intergenic 30.0%
GCATAAATTTACCTGGAAAA+GGG - chr3.2:58692075-58692094 None:intergenic 30.0%
GGGTGTAAAATAATTGTAGA+TGG + chr3.2:58688060-58688079 MS.gene049596:intron 30.0%
GTATACTAAGTAACAACTAG+TGG + chr3.2:58689981-58690000 MS.gene049596:intron 30.0%
GTCAATATAAAAGTTGTACG+TGG - chr3.2:58691777-58691796 None:intergenic 30.0%
GTCCAATGTCAATCTTTAAA+GGG - chr3.2:58688218-58688237 None:intergenic 30.0%
TAAGCATTAGAAGATATGAG+GGG - chr3.2:58692901-58692920 None:intergenic 30.0%
TACTGCTATTATCTTATGCT+AGG + chr3.2:58690531-58690550 MS.gene049596:intron 30.0%
TAGCTGACACTAAAGAATAA+GGG - chr3.2:58693181-58693200 None:intergenic 30.0%
TATCAAGATATCAGTGACAT+TGG - chr3.2:58689699-58689718 None:intergenic 30.0%
TATCCAACACGACAATATAT+AGG - chr3.2:58692230-58692249 None:intergenic 30.0%
TCACAACAATATCAACCATT+GGG + chr3.2:58690057-58690076 MS.gene049596:intron 30.0%
TCATAAGAAGGTTTCTTTGA+TGG + chr3.2:58690248-58690267 MS.gene049596:CDS 30.0%
TCTACTCTTGACAGATATAA+TGG - chr3.2:58689311-58689330 None:intergenic 30.0%
TCTTATATGATGTGTACAGA+TGG + chr3.2:58688762-58688781 MS.gene049596:intron 30.0%
TGCATAAATTTACCTGGAAA+AGG - chr3.2:58692076-58692095 None:intergenic 30.0%
TTAAGATGGTTAAAATACCC+TGG + chr3.2:58689523-58689542 MS.gene049596:intron 30.0%
TTACTGTTTAATAGTGGTAG+TGG + chr3.2:58688323-58688342 MS.gene049596:intron 30.0%
TTAGCTGACACTAAAGAATA+AGG - chr3.2:58693182-58693201 None:intergenic 30.0%
TTATTGGGTGAAATTCATGT+GGG + chr3.2:58688914-58688933 MS.gene049596:intron 30.0%
TTGCAATTTCTCTTCATTCA+GGG + chr3.2:58692748-58692767 MS.gene049596:intron 30.0%
TTTATTGGGTGAAATTCATG+TGG + chr3.2:58688913-58688932 MS.gene049596:intron 30.0%
TTTCCTATATATTGTCGTGT+TGG + chr3.2:58692224-58692243 MS.gene049596:intron 30.0%
TTTGCAATTTCTCTTCATTC+AGG + chr3.2:58692747-58692766 MS.gene049596:intron 30.0%
! AATATCTTCTTTTGCACTAG+AGG - chr3.2:58690620-58690639 None:intergenic 30.0%
! ATTACATTTTTCTGTTCTCC+TGG + chr3.2:58690486-58690505 MS.gene049596:intron 30.0%
! CGAGCAGAAATAATTTTATG+TGG + chr3.2:58693089-58693108 MS.gene049596:intron 30.0%
! GTCTTTGCATAGTTTTCATT+AGG + chr3.2:58692144-58692163 MS.gene049596:intron 30.0%
! TCCCCTAATCAATTTTTATG+TGG + chr3.2:58688426-58688445 MS.gene049596:intron 30.0%
! TGACTATTTTCGTGTTTACA+AGG + chr3.2:58689956-58689975 MS.gene049596:CDS 30.0%
! TGGGAAAGTTTAGAATACAA+AGG + chr3.2:58690711-58690730 MS.gene049596:intron 30.0%
! TTCTCATTTTCTGTCTCTTT+TGG + chr3.2:58687832-58687851 MS.gene049596:intron 30.0%
!! AATCAAGCTTTGATAGTGTA+TGG - chr3.2:58690091-58690110 None:intergenic 30.0%
!! TTATATTGACTCAAGCTGTT+GGG + chr3.2:58691787-58691806 MS.gene049596:intron 30.0%
!! TTTATATTGACTCAAGCTGT+TGG + chr3.2:58691786-58691805 MS.gene049596:intron 30.0%
!!! TAAAGGGCATTTTTCTTTGA+TGG - chr3.2:58688202-58688221 None:intergenic 30.0%
!!! TCTCTTATTTTCTTCTTACC+AGG + chr3.2:58687923-58687942 MS.gene049596:intron 30.0%
AAAGTCATCGTTCAAAGTGA+AGG - chr3.2:58688133-58688152 None:intergenic 35.0%
AAATGGATGTCTTATGGCAA+CGG + chr3.2:58687974-58687993 MS.gene049596:CDS 35.0%
AAATTCCCTTCTTCCAAAGT+AGG - chr3.2:58688109-58688128 None:intergenic 35.0%
AAATTTACCTGGAAAAGGGT+GGG - chr3.2:58692071-58692090 None:intergenic 35.0%
AAGAGACAGAAAATGAGAAC+TGG - chr3.2:58687831-58687850 None:intergenic 35.0%
AAGAGAGGATATGAGAAAAG+TGG - chr3.2:58691525-58691544 None:intergenic 35.0%
AAGATATTAATGTTGTGCGG+TGG + chr3.2:58690632-58690651 MS.gene049596:CDS 35.0%
AATCATGTAGCATTCTGCAT+TGG - chr3.2:58689173-58689192 None:intergenic 35.0%
AATGATGTCTTTATTGCGTG+TGG + chr3.2:58689121-58689140 MS.gene049596:intron 35.0%
ACTAACGAAGTTTGCATTCA+GGG - chr3.2:58692659-58692678 None:intergenic 35.0%
ACTACTGTTTCAGATGACTT+TGG + chr3.2:58689736-58689755 MS.gene049596:intron 35.0%
AGAGAGGATATGAGAAAAGT+GGG - chr3.2:58691524-58691543 None:intergenic 35.0%
AGAGGGTAAAAATGTCAAGA+AGG - chr3.2:58688585-58688604 None:intergenic 35.0%
AGATATTAATGTTGTGCGGT+GGG + chr3.2:58690633-58690652 MS.gene049596:CDS 35.0%
AGCTGACACTAAAGAATAAG+GGG - chr3.2:58693180-58693199 None:intergenic 35.0%
AGTAGACTTAATGCATGTGT+TGG + chr3.2:58689325-58689344 MS.gene049596:intron 35.0%
AGTGCTATGAAAACTCATGT+GGG - chr3.2:58688981-58689000 None:intergenic 35.0%
ATACTGAATTATAGGGAGAG+AGG - chr3.2:58688268-58688287 None:intergenic 35.0%
ATCATACACCAATGTTCTCA+AGG + chr3.2:58690369-58690388 MS.gene049596:CDS 35.0%
ATTCATCAGGAATCATGCTT+AGG - chr3.2:58690462-58690481 None:intergenic 35.0%
CATAGAAGTCAAGAGCAATA+AGG + chr3.2:58690793-58690812 MS.gene049596:intron 35.0%
CATTTATTACTTGGAGTAGG+AGG + chr3.2:58692175-58692194 MS.gene049596:intron 35.0%
CCATTCTATACAACATAAGC+AGG - chr3.2:58691308-58691327 None:intergenic 35.0%
CCTGCTTATGTTGTATAGAA+TGG + chr3.2:58691305-58691324 MS.gene049596:intron 35.0%
CTGCGTTTACTGTTTAATAG+TGG + chr3.2:58688317-58688336 MS.gene049596:intron 35.0%
GAAATAACAAGGACAATACC+AGG - chr3.2:58690507-58690526 None:intergenic 35.0%
GAGAAGATCATACTGATATG+TGG - chr3.2:58689082-58689101 None:intergenic 35.0%
GATCGTCTAGCATAATTACT+TGG + chr3.2:58691942-58691961 MS.gene049596:intron 35.0%
GCATGATGAAAAATCAGAAC+TGG - chr3.2:58689426-58689445 None:intergenic 35.0%
GGAACTGGATAAAAGACTAA+AGG - chr3.2:58688401-58688420 None:intergenic 35.0%
GGAAGAATCAATCACTTTGA+TGG - chr3.2:58688722-58688741 None:intergenic 35.0%
GGATGTAACTAACCGTAATA+TGG - chr3.2:58687810-58687829 None:intergenic 35.0%
GGTCCAATGTCAATCTTTAA+AGG - chr3.2:58688219-58688238 None:intergenic 35.0%
GGTTCTTAGTTTATCTCCTA+GGG + chr3.2:58691027-58691046 MS.gene049596:intron 35.0%
GTCACAACAATATCAACCAT+TGG + chr3.2:58690056-58690075 MS.gene049596:intron 35.0%
GTTGCAATCTGGAAAACATA+AGG + chr3.2:58690672-58690691 MS.gene049596:CDS 35.0%
TAAATTTACCTGGAAAAGGG+TGG - chr3.2:58692072-58692091 None:intergenic 35.0%
TAAGCAGGTGAATACTTTGT+AGG - chr3.2:58691293-58691312 None:intergenic 35.0%
TACTGAATTATAGGGAGAGA+GGG - chr3.2:58688267-58688286 None:intergenic 35.0%
TACTGTGTGTGATTCATTAC+AGG + chr3.2:58691333-58691352 MS.gene049596:intron 35.0%
TATGGTAGGAGAATTGTTGT+AGG + chr3.2:58689207-58689226 MS.gene049596:intron 35.0%
TCAAACTCAGAATCTTGTTG+TGG - chr3.2:58687771-58687790 None:intergenic 35.0%
TGGTTCTTAGTTTATCTCCT+AGG + chr3.2:58691026-58691045 MS.gene049596:intron 35.0%
TGTATGGTAAATAGACCCAA+TGG - chr3.2:58690075-58690094 None:intergenic 35.0%
TGTTAATTACCCGTAGCATA+TGG + chr3.2:58689379-58689398 MS.gene049596:intron 35.0%
TGTTCAATACCATATGCTAC+GGG - chr3.2:58689391-58689410 None:intergenic 35.0%
TTATGACGAGACTTTACTGA+TGG + chr3.2:58691815-58691834 MS.gene049596:intron 35.0%
TTGATTTCATGTTCTGTCCA+GGG + chr3.2:58690213-58690232 MS.gene049596:intron 35.0%
TTGTCGTGTTGGATAAGAAA+AGG + chr3.2:58692235-58692254 MS.gene049596:intron 35.0%
TTGTGCCTACAAAAAGGATT+AGG - chr3.2:58691420-58691439 None:intergenic 35.0%
! AATCAGCGTTTTCTTTTTCC+AGG + chr3.2:58690344-58690363 MS.gene049596:intron 35.0%
! AATCCTTTTTGTAGGCACAA+GGG + chr3.2:58691420-58691439 MS.gene049596:intron 35.0%
! ATCAATCACTTTGATGGCTA+TGG - chr3.2:58688716-58688735 None:intergenic 35.0%
! CAAACTCAGAATCTTGTTGT+GGG - chr3.2:58687770-58687789 None:intergenic 35.0%
! CTCTTTGGAAATTGTCAGAT+AGG + chr3.2:58691904-58691923 MS.gene049596:intron 35.0%
! GGAAAAAGAAAACGCTGATT+AGG - chr3.2:58690344-58690363 None:intergenic 35.0%
! GTCTTCCTAATCCTTTTTGT+AGG + chr3.2:58691412-58691431 MS.gene049596:intron 35.0%
! GTTTTCGGATGTACACAAAA+TGG - chr3.2:58691735-58691754 None:intergenic 35.0%
! TAATCCTTTTTGTAGGCACA+AGG + chr3.2:58691419-58691438 MS.gene049596:intron 35.0%
! TACATTGTTTGGTAGCAGAA+TGG + chr3.2:58692950-58692969 MS.gene049596:intron 35.0%
! TATGACTATTTTCATTGCCC+TGG - chr3.2:58690233-58690252 None:intergenic 35.0%
! TGCCCTTTAAAGATTGACAT+TGG + chr3.2:58688213-58688232 MS.gene049596:CDS 35.0%
! TTTTGTGTACATCCGAAAAC+AGG + chr3.2:58691735-58691754 MS.gene049596:CDS 35.0%
!! AAATGAGTGTTGCTTGACAA+CGG + chr3.2:58689654-58689673 MS.gene049596:intron 35.0%
!! ATAGCAGCATCGACATAATT+TGG - chr3.2:58693205-58693224 None:intergenic 35.0%
!! CATGCTTAATATTTTTGCCG+AGG + chr3.2:58689441-58689460 MS.gene049596:intron 35.0%
!! TTGTTGGTAATGAATACTGC+AGG + chr3.2:58693285-58693304 MS.gene049596:intron 35.0%
AAAATCAACTCCCTCTCAAC+TGG - chr3.2:58688505-58688524 None:intergenic 40.0%
AAAGCGTAACTGAGTTTCCA+AGG - chr3.2:58692987-58693006 None:intergenic 40.0%
AACATTGGTGTATGATGTCC+TGG - chr3.2:58690365-58690384 None:intergenic 40.0%
AAGATATCAGTGACATTGGG+TGG - chr3.2:58689695-58689714 None:intergenic 40.0%
AAGCGTAACTGAGTTTCCAA+GGG - chr3.2:58692986-58693005 None:intergenic 40.0%
ACATTACTCTACAACCTTCC+AGG - chr3.2:58689544-58689563 None:intergenic 40.0%
ACGCAAATTACTACCTCTCA+AGG - chr3.2:58688743-58688762 None:intergenic 40.0%
ACTAACGGAGTCTACATTCA+GGG - chr3.2:58692691-58692710 None:intergenic 40.0%
AGTCAAAGAACTCCATAGGT+TGG + chr3.2:58693344-58693363 MS.gene049596:CDS 40.0%
AGTTTATCTCCTAGGGTCTA+GGG + chr3.2:58691034-58691053 MS.gene049596:intron 40.0%
ATCTGATCCTGAAGATCACA+AGG - chr3.2:58689491-58689510 None:intergenic 40.0%
ATTGTAGATGGGAAACATCC+TGG + chr3.2:58688072-58688091 MS.gene049596:intron 40.0%
CATTACTCTACAACCTTCCA+GGG - chr3.2:58689543-58689562 None:intergenic 40.0%
CATTAGAAGATATGAGGGGA+TGG - chr3.2:58692897-58692916 None:intergenic 40.0%
CTTCATTCCTTGTGATCTTC+AGG + chr3.2:58689481-58689500 MS.gene049596:intron 40.0%
CTTCTGAACTTAGGGGAAAA+TGG + chr3.2:58690578-58690597 MS.gene049596:CDS 40.0%
GACTAACGAAGTTTGCATTC+AGG - chr3.2:58692660-58692679 None:intergenic 40.0%
GAGCTGTAGTGTGTACATTT+CGG + chr3.2:58689232-58689251 MS.gene049596:intron 40.0%
GAGTGCTATGAAAACTCATG+TGG - chr3.2:58688982-58689001 None:intergenic 40.0%
GATGGTTAAAATACCCTGGA+AGG + chr3.2:58689527-58689546 MS.gene049596:intron 40.0%
GATTAGGGGAAAAATGGAAC+TGG - chr3.2:58688416-58688435 None:intergenic 40.0%
GGCATGAAAGATCATAAGAG+AGG - chr3.2:58691540-58691559 None:intergenic 40.0%
GTGTTCCTATTGACCCAAAT+CGG + chr3.2:58692018-58692037 MS.gene049596:CDS 40.0%
GTTTGTCAAGGACTAGGATT+TGG + chr3.2:58690004-58690023 MS.gene049596:intron 40.0%
TAGTGGTCACTAGAAGCAAT+AGG + chr3.2:58688340-58688359 MS.gene049596:intron 40.0%
TAGTTTATCTCCTAGGGTCT+AGG + chr3.2:58691033-58691052 MS.gene049596:intron 40.0%
TCAAAACTTACTCGCTACTG+AGG + chr3.2:58690420-58690439 MS.gene049596:CDS 40.0%
TCAGGGACTAAAGTGACTAA+CGG - chr3.2:58692815-58692796 None:intergenic 40.0%
TTCATTGTTGGGTGTGTGAT+GGG + chr3.2:58689800-58689819 MS.gene049596:CDS 40.0%
TTGAGAGCTGATGTTAATGG+TGG + chr3.2:58692394-58692413 MS.gene049596:CDS 40.0%
! AGCTGTTGCTTCTGAACTTA+GGG + chr3.2:58690570-58690589 MS.gene049596:intron 40.0%
! AGTCACTTTAGTCCCTGAAT+CGG + chr3.2:58692613-58692632 MS.gene049596:intron 40.0%
! AGTCACTTTAGTCCCTGAAT+GGG - chr3.2:58692632-58692613 None:intergenic 40.0%
! ATCAGTCCTACTTTGGAAGA+AGG + chr3.2:58688100-58688119 MS.gene049596:CDS 40.0%
! GTGATTGATTCTTCCTTGAG+AGG + chr3.2:58688727-58688746 MS.gene049596:CDS 40.0%
! GTTGATTTCATGTTCTGTCC+AGG + chr3.2:58690212-58690231 MS.gene049596:intron 40.0%
! TAGTCACTTTAGTCCCTGAA+TGG - chr3.2:58692631-58692612 None:intergenic 40.0%
! TCAGTCCTACTTTGGAAGAA+GGG + chr3.2:58688101-58688120 MS.gene049596:CDS 40.0%
! TGGGTCTCAAACTTTGGAAA+TGG - chr3.2:58688962-58688981 None:intergenic 40.0%
! TTGATGGCTATGGTCATCAA+TGG - chr3.2:58688706-58688725 None:intergenic 40.0%
!! AACAACTAGTGGGTTTGTCA+AGG + chr3.2:58689992-58690011 MS.gene049596:intron 40.0%
!! ACGAAGAGGTGTTCATTGTT+GGG + chr3.2:58689789-58689808 MS.gene049596:CDS 40.0%
!! AGTCTGCATACTGATTTGTG+TGG + chr3.2:58688039-58688058 MS.gene049596:intron 40.0%
!! CAAGGGCATTGTTGTAAGAT+TGG - chr3.2:58688167-58688186 None:intergenic 40.0%
!! GTCTGCATACTGATTTGTGT+GGG + chr3.2:58688040-58688059 MS.gene049596:intron 40.0%
!! TTGGTAATGAATACTGCAGG+AGG + chr3.2:58693288-58693307 MS.gene049596:intron 40.0%
AAGAGCAATAAGGGCCTGTT+TGG + chr3.2:58690803-58690822 MS.gene049596:intron 45.0%
AAGTAGACACAGTCACCTAG+TGG + chr3.2:58689030-58689049 MS.gene049596:intron 45.0%
ACCTTTGCAAAAAGCCTGCA+AGG + chr3.2:58693026-58693045 MS.gene049596:CDS 45.0%
ACTTTAGTCCCTGAATCGGA+AGG + chr3.2:58692617-58692636 MS.gene049596:intron 45.0%
ATGAGGGGATGGCAATGAAA+AGG - chr3.2:58692886-58692905 None:intergenic 45.0%
ATGCAAAGACTTGAGCCAGA+GGG - chr3.2:58692134-58692153 None:intergenic 45.0%
ATGTCTTCACTCCAGTTGAG+AGG + chr3.2:58688491-58688510 MS.gene049596:CDS 45.0%
ATGTGGTTCAGCCTGCAAAA+AGG + chr3.2:58688443-58688462 MS.gene049596:intron 45.0%
ATTGCAAAACAGTCCCTGCA+TGG - chr3.2:58692735-58692754 None:intergenic 45.0%
CAACCCTTGTGCCTACAAAA+AGG - chr3.2:58691426-58691445 None:intergenic 45.0%
CACATACTCTGGGTCTATAG+TGG + chr3.2:58689766-58689785 MS.gene049596:CDS 45.0%
CAGCAGTCAAAGAACTCCAT+AGG + chr3.2:58693340-58693359 MS.gene049596:CDS 45.0%
CCTAGCAACAACAGTGATTC+AGG - chr3.2:58689269-58689288 None:intergenic 45.0%
CCTGAATCACTGTTGTTGCT+AGG + chr3.2:58689266-58689285 MS.gene049596:intron 45.0%
CTCAAGACTTACGCCAAGAA+AGG - chr3.2:58690288-58690307 None:intergenic 45.0%
CTCATGTGGGTCTCAAACTT+TGG - chr3.2:58688968-58688987 None:intergenic 45.0%
CTGATGTTTGCTTGGATTGC+TGG + chr3.2:58688680-58688699 MS.gene049596:CDS 45.0%
CTTTAGTCCCTGAATCGGAA+GGG + chr3.2:58692618-58692637 MS.gene049596:intron 45.0%
GACTAACGGAGTCTACATTC+AGG - chr3.2:58692692-58692711 None:intergenic 45.0%
GATGTCAGATACTGCTGCAA+GGG + chr3.2:58688655-58688674 MS.gene049596:CDS 45.0%
GCATAAGGAAACAGCTTTCC+TGG - chr3.2:58687944-58687963 None:intergenic 45.0%
GGCAGAGTAAACTTATGCCA+AGG - chr3.2:58689152-58689171 None:intergenic 45.0%
GGCTTGAGAGCTGATGTTAA+TGG + chr3.2:58692391-58692410 MS.gene049596:CDS 45.0%
GGGGAAAATGGCAAGACAAT+AGG + chr3.2:58690590-58690609 MS.gene049596:CDS 45.0%
GTTCATTGTTGGGTGTGTGA+TGG + chr3.2:58689799-58689818 MS.gene049596:CDS 45.0%
TACTGCAGGAGGAGATAGAA+AGG + chr3.2:58693299-58693318 MS.gene049596:intron 45.0%
TACTTACCCCAGGCTAGATA+TGG + chr3.2:58691478-58691497 MS.gene049596:CDS 45.0%
TATGCAAAGACTTGAGCCAG+AGG - chr3.2:58692135-58692154 None:intergenic 45.0%
TATTGCGTGTGGTCATTCCT+TGG + chr3.2:58689132-58689151 MS.gene049596:intron 45.0%
TCCCTGAAATTGACCATGCA+GGG + chr3.2:58692719-58692738 MS.gene049596:intron 45.0%
TCCCTGCATGGTCAATTTCA+GGG - chr3.2:58692723-58692742 None:intergenic 45.0%
TGATGTCAGATACTGCTGCA+AGG + chr3.2:58688654-58688673 MS.gene049596:CDS 45.0%
TGCAAGCAGTTGTTGCAATC+TGG + chr3.2:58690661-58690680 MS.gene049596:CDS 45.0%
TGCTGCTCTTCATCCTTTCT+TGG + chr3.2:58690272-58690291 MS.gene049596:CDS 45.0%
TGGCTTCAAGCACATACTCT+GGG + chr3.2:58689756-58689775 MS.gene049596:CDS 45.0%
TGTCTTCACTCCAGTTGAGA+GGG + chr3.2:58688492-58688511 MS.gene049596:CDS 45.0%
TGTTCTGCTATACTTACCCC+AGG + chr3.2:58691468-58691487 MS.gene049596:CDS 45.0%
TTCAGAAGCAACAGCTGCAA+AGG - chr3.2:58690566-58690585 None:intergenic 45.0%
TTGGCTTCAAGCACATACTC+TGG + chr3.2:58689755-58689774 MS.gene049596:CDS 45.0%
! ACCTTGCAGGCTTTTTGCAA+AGG - chr3.2:58693030-58693049 None:intergenic 45.0%
! CAGCTGTTGCTTCTGAACTT+AGG + chr3.2:58690569-58690588 MS.gene049596:intron 45.0%
! GCTGTTGCTTCTGAACTTAG+GGG + chr3.2:58690571-58690590 MS.gene049596:intron 45.0%
! GTTACATCGACTGTGTAGAC+AGG - chr3.2:58688240-58688259 None:intergenic 45.0%
! TGGGTCTCGTCACTTTATGT+GGG + chr3.2:58688933-58688952 MS.gene049596:intron 45.0%
! TGTTTGGTAGCAGAATGGAG+TGG + chr3.2:58692955-58692974 MS.gene049596:intron 45.0%
!! GACGAAGAGGTGTTCATTGT+TGG + chr3.2:58689788-58689807 MS.gene049596:CDS 45.0%
!! GATGGAGTTTTCGAGCTCAA+GGG - chr3.2:58688184-58688203 None:intergenic 45.0%
!! TAGTGGGTTTGTCAAGGACT+AGG + chr3.2:58689998-58690017 MS.gene049596:intron 45.0%
!! TGATGGAGTTTTCGAGCTCA+AGG - chr3.2:58688185-58688204 None:intergenic 45.0%
AAGTAGGACTGATCACAGCC+AGG - chr3.2:58688093-58688112 None:intergenic 50.0%
ACAGACCTCCATATCTAGCC+TGG - chr3.2:58691489-58691508 None:intergenic 50.0%
AGAACCAAGTAGGGTCCGTT+TGG - chr3.2:58691013-58691032 None:intergenic 50.0%
AGACCTCCATATCTAGCCTG+GGG - chr3.2:58691487-58691506 None:intergenic 50.0%
CAAGTAGGGTCCGTTTGGAT+TGG - chr3.2:58691008-58691027 None:intergenic 50.0%
CAATCCAAACGGACCCTACT+TGG + chr3.2:58691006-58691025 MS.gene049596:intron 50.0%
CAGACCTCCATATCTAGCCT+GGG - chr3.2:58691488-58691507 None:intergenic 50.0%
CTTTAGTCCCTGAATGGGAG+AGG - chr3.2:58692789-58692808 None:intergenic 50.0%
GAATGGAGTGGAACTTCCCT+TGG + chr3.2:58692967-58692986 MS.gene049596:intron 50.0%
GACGAATCCCTTCCGATTCA+GGG - chr3.2:58692628-58692647 None:intergenic 50.0%
GACGAATCCTCTCCCATTCA+GGG + chr3.2:58692779-58692798 MS.gene049596:intron 50.0%
GGATGTCTTATGGCAACGGT+AGG + chr3.2:58687978-58687997 MS.gene049596:intron 50.0%
GGCTGTGATCAGTCCTACTT+TGG + chr3.2:58688093-58688112 MS.gene049596:CDS 50.0%
GTCCCTGAAATTGACCATGC+AGG + chr3.2:58692718-58692737 MS.gene049596:intron 50.0%
GTCCCTGCATGGTCAATTTC+AGG - chr3.2:58692724-58692743 None:intergenic 50.0%
TGACGAATCCCTTCCGATTC+AGG - chr3.2:58692629-58692648 None:intergenic 50.0%
TGACGAATCCTCTCCCATTC+AGG + chr3.2:58692778-58692797 MS.gene049596:intron 50.0%
TTACCCCAGGCTAGATATGG+AGG + chr3.2:58691481-58691500 MS.gene049596:CDS 50.0%
! GCATAGGCATGCCTTTTTGC+AGG - chr3.2:58688457-58688476 None:intergenic 50.0%
! GGGTCTCGTCACTTTATGTG+GGG + chr3.2:58688934-58688953 MS.gene049596:intron 50.0%
! GTGGGTCTCGTCACTTTATG+TGG + chr3.2:58688932-58688951 MS.gene049596:intron 50.0%
! TCTCTTTCATGGTCGGCTCT+AGG + chr3.2:58688615-58688634 MS.gene049596:intron 50.0%
! TGTGTGATGGGAAGGCTAGA+AGG + chr3.2:58689812-58689831 MS.gene049596:CDS 50.0%
! TTGTTGGGTGTGTGATGGGA+AGG + chr3.2:58689804-58689823 MS.gene049596:CDS 50.0%
!! CAAACTCGTCGCACCGATTT+GGG - chr3.2:58692034-58692053 None:intergenic 50.0%
!! CAAGGGTGCTGATGTTTGCT+TGG + chr3.2:58688672-58688691 MS.gene049596:CDS 50.0%
!! CTAGGATTTGGTGCAGTCGA+TGG + chr3.2:58690016-58690035 MS.gene049596:intron 50.0%
!! TCAAACTCGTCGCACCGATT+TGG - chr3.2:58692035-58692054 None:intergenic 50.0%
!! TCGCACCGATTTGGGTCAAT+AGG - chr3.2:58692026-58692045 None:intergenic 50.0%
!! TGGGTCTATAGTGGACGAAG+AGG + chr3.2:58689775-58689794 MS.gene049596:CDS 50.0%
AGAAACTGGCCCTAGACCCT+AGG - chr3.2:58691046-58691065 None:intergenic 55.0%
GCAACAGAGATGGTTCCCTC+TGG + chr3.2:58692116-58692135 MS.gene049596:intron 55.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 58687762 58693369 58687762 ID=MS.gene049596
chr3.2 mRNA 58687762 58693369 58687762 ID=MS.gene049596.t1;Parent=MS.gene049596
chr3.2 exon 58687762 58687816 58687762 ID=MS.gene049596.t1.exon1;Parent=MS.gene049596.t1
chr3.2 CDS 58687762 58687816 58687762 ID=cds.MS.gene049596.t1;Parent=MS.gene049596.t1
chr3.2 exon 58687945 58687995 58687945 ID=MS.gene049596.t1.exon2;Parent=MS.gene049596.t1
chr3.2 CDS 58687945 58687995 58687945 ID=cds.MS.gene049596.t1;Parent=MS.gene049596.t1
chr3.2 exon 58688079 58688254 58688079 ID=MS.gene049596.t1.exon3;Parent=MS.gene049596.t1
chr3.2 CDS 58688079 58688254 58688079 ID=cds.MS.gene049596.t1;Parent=MS.gene049596.t1
chr3.2 exon 58688454 58688531 58688454 ID=MS.gene049596.t1.exon4;Parent=MS.gene049596.t1
chr3.2 CDS 58688454 58688531 58688454 ID=cds.MS.gene049596.t1;Parent=MS.gene049596.t1
chr3.2 exon 58688637 58688748 58688637 ID=MS.gene049596.t1.exon5;Parent=MS.gene049596.t1
chr3.2 CDS 58688637 58688748 58688637 ID=cds.MS.gene049596.t1;Parent=MS.gene049596.t1
chr3.2 exon 58689749 58689833 58689749 ID=MS.gene049596.t1.exon6;Parent=MS.gene049596.t1
chr3.2 CDS 58689749 58689833 58689749 ID=cds.MS.gene049596.t1;Parent=MS.gene049596.t1
chr3.2 exon 58689926 58689977 58689926 ID=MS.gene049596.t1.exon7;Parent=MS.gene049596.t1
chr3.2 CDS 58689926 58689977 58689926 ID=cds.MS.gene049596.t1;Parent=MS.gene049596.t1
chr3.2 exon 58690234 58690295 58690234 ID=MS.gene049596.t1.exon8;Parent=MS.gene049596.t1
chr3.2 CDS 58690234 58690295 58690234 ID=cds.MS.gene049596.t1;Parent=MS.gene049596.t1
chr3.2 exon 58690366 58690481 58690366 ID=MS.gene049596.t1.exon9;Parent=MS.gene049596.t1
chr3.2 CDS 58690366 58690481 58690366 ID=cds.MS.gene049596.t1;Parent=MS.gene049596.t1
chr3.2 exon 58690572 58690693 58690572 ID=MS.gene049596.t1.exon10;Parent=MS.gene049596.t1
chr3.2 CDS 58690572 58690693 58690572 ID=cds.MS.gene049596.t1;Parent=MS.gene049596.t1
chr3.2 exon 58691434 58691502 58691434 ID=MS.gene049596.t1.exon11;Parent=MS.gene049596.t1
chr3.2 CDS 58691434 58691502 58691434 ID=cds.MS.gene049596.t1;Parent=MS.gene049596.t1
chr3.2 exon 58691699 58691756 58691699 ID=MS.gene049596.t1.exon12;Parent=MS.gene049596.t1
chr3.2 CDS 58691699 58691756 58691699 ID=cds.MS.gene049596.t1;Parent=MS.gene049596.t1
chr3.2 exon 58692009 58692082 58692009 ID=MS.gene049596.t1.exon13;Parent=MS.gene049596.t1
chr3.2 CDS 58692009 58692082 58692009 ID=cds.MS.gene049596.t1;Parent=MS.gene049596.t1
chr3.2 exon 58692367 58692415 58692367 ID=MS.gene049596.t1.exon14;Parent=MS.gene049596.t1
chr3.2 CDS 58692367 58692415 58692367 ID=cds.MS.gene049596.t1;Parent=MS.gene049596.t1
chr3.2 exon 58692968 58693047 58692968 ID=MS.gene049596.t1.exon15;Parent=MS.gene049596.t1
chr3.2 CDS 58692968 58693047 58692968 ID=cds.MS.gene049596.t1;Parent=MS.gene049596.t1
chr3.2 exon 58693307 58693369 58693307 ID=MS.gene049596.t1.exon16;Parent=MS.gene049596.t1
chr3.2 CDS 58693307 58693369 58693307 ID=cds.MS.gene049596.t1;Parent=MS.gene049596.t1
Gene Sequence

>MS.gene049596

ATGATCCCACAACAAGATTCTGAGTTTGATTCCAATTTTCTCAAACCATATTACGGTTAGTTACATCCAGTTCTCATTTTCTGTCTCTTTTGGTTTGTGCGTGTATAAAATTAGCTTAATTTTATTCGATTTGTTTTGTATTGTGTTTTAACCATACGTTTTCTCTTATTTTCTTCTTACCAGGAAAGCTGTTTCCTTATGCTGATATATTTAAATGGATGTCTTATGGCAACGGTAGGATTTATCGAACTCTTGCTTATGACGAATATGTTAAACGAGTCTGCATACTGATTTGTGTGGGTGTAAAATAATTGTAGATGGGAAACATCCTGGCTGTGATCAGTCCTACTTTGGAAGAAGGGAATTTTCCTTCACTTTGAACGATGACTTTTATCTGCGCTTCCAATCTTACAACAATGCCCTTGAGCTCGAAAACTCCATCAAAGAAAAATGCCCTTTAAAGATTGACATTGGACCTGTCTACACAGTCGATGTAACATTTCCCTCTCTCCCTATAATTCAGTATTATTGTGCTTCAGTTTTGATATGATTTTTCTGCGTTTACTGTTTAATAGTGGTAGTGGTCACTAGAAGCAATAGGAAAGTTTTGTGAATAGTCATGAGTATTTTTTTTTTCCTTTAGTCTTTTATCCAGTTCCATTTTTCCCCTAATCAATTTTTATGTGGTTCAGCCTGCAAAAAGGCATGCCTATGCACAAAGCGATAATAATGTCTTCACTCCAGTTGAGAGGGAGTTGATTTTTGATATTGTAAGTTTTTCTGACTTGAGTCTCCTGCTGAAAGTTTTTAGATACTTTGACCTTCTTGACATTTTTACCCTCTTTTATTTTTTTCTCTTTCATGGTCGGCTCTAGGATATGACAGACTATGATGATGTCAGATACTGCTGCAAGGGTGCTGATGTTTGCTTGGATTGCTGGCCATTGATGACCATAGCCATCAAAGTGATTGATTCTTCCTTGAGAGGTAGTAATTTGCGTCTTATATGATGTGTACAGATGGTGCAGTGCTTGTCATTTATATTGTTCATTGAATAGAAGACTTAATTTTTAAAAAACAGGATGTAATCATTTCTTTTATAGAGAAATGCTAGGAACACTCTCTTTCTAACACTCTCTCTAACAATCTCTTTTATTGGGTGAAATTCATGTGGGTCTCGTCACTTTATGTGGGGATCCATTTCCAAAGTTTGAGACCCACATGAGTTTTCATAGCACTCCTCTCTTTTAAATAAATGAAAGAATTTGAAGTAGACACAGTCACCTAGTGGAAATACTCTTAAATAACATAAGTTCACCACATATCAGTATGATCTTCTCAATTCATAGCATATCAGATAATGATGTCTTTATTGCGTGTGGTCATTCCTTGGCATAAGTTTACTCTGCCAATGCAGAATGCTACATGATTCCTATTTGAATATTTATGGTAGGAGAATTGTTGTAGGCTGAGCTGTAGTGTGTACATTTCGGCATATGACTTGCCTGAATCACTGTTGTTGCTAGGAATTATGCTTTCAGCAATGCCATTATATCTGTCAAGAGTAGACTTAATGCATGTGTTGGCCTTCACTTCATGATATTTACTCTTATTTGATGTTAATTACCCGTAGCATATGGTATTGAACATTTGTTTTCATCCCAGTTCTGATTTTTCATCATGCTTAATATTTTTGCCGAGGATTGAGAATTTTACTCTCTTCATTCCTTGTGATCTTCAGGATCAGATGCTTAACTGAAATTAAGATGGTTAAAATACCCTGGAAGGTTGTAGAGTAATGTCTAACTTGCCCTAAAACCATCTATAATAATTAGATTGAGCCTATCTGGTCATTGAATTCATTGCACAACACACAGTTATAGCACAATATGAAATGAGTGTTGCTTGACAACGGCAATTGTAATCTTCTCCACCCAATGTCACTGATATCTTGATAATGAATTTTGTTTTGGAACTACTGTTTCAGATGACTTTGGCTTCAAGCACATACTCTGGGTCTATAGTGGACGAAGAGGTGTTCATTGTTGGGTGTGTGATGGGAAGGCTAGAAGGTGAGACACTAGACAGTCAAAAGTTTTAACTTTTACTTCATCTTCATGCACTGCGCACAGTTAATTCAATTATATTATCTTTACTATTGCAGGTTGACTAATGAGCAAAGAGCTTCTGTTGCTGACTATTTTCGTGTTTACAAGGTAGTATACTAAGTAACAACTAGTGGGTTTGTCAAGGACTAGGATTTGGTGCAGTCGATGGTTGATATAGTCAGTGCAGTCACAACAATATCAACCATTGGGTCTATTTACCATACACTATCAAAGCTTGATTTCTTTGTCCAAAAAAAAAAAGAAAAAAAGAAGTAGAAGTTAGAGCGACATAGACGCTTGAGTGAACACAATCTGAATCTGTTTGCCCATGTATTAATGTTTGTTGATTTCATGTTCTGTCCAGGGCAATGAAAATAGTCATAAGAAGGTTTCTTTGATGGGTGCTGCTCTTCATCCTTTCTTGGCGTAAGTCTTGAGACAAATTATTAATTTATGATGCTTATTTCATCTCCTAATCAGCGTTTTCTTTTTCCAGGACATCATACACCAATGTTCTCAAGGACTATTTTGAGAAAGTACTGCTTACAAGTCAAAACTTACTCGCTACTGAGGAGAGATATGAGAAGATCCTAAGCATGATTCCTGATGAATGTACATTACATTTTTCTGTTCTCCTGGTATTGTCCTTGTTATTTCATTTTACTGCTATTATCTTATGCTAGGCATGTTTTACCTTTGCAGCTGTTGCTTCTGAACTTAGGGGAAAATGGCAAGACAATAGGCGTTCCTCTAGTGCAAAAGAAGATATTAATGTTGTGCGGTGGGAACAGTGCAAGCAGTTGTTGCAATCTGGAAAACATAAGGTATAAAATATTCTTTTTGGGAAAGTTTAGAATACAAAGGTAACAATGGCATTTTCTCTCTGCAATATTTGTACAAATAGTGGAAAACAGTTTAATGAGCATAGAAGTCAAGAGCAATAAGGGCCTGTTTGGATTGAGCTTATTTTGAGCTTATGAAAAAGAGCTTATGCAAATAATTAAGCTTTTATGTTAATTCATAAGATCTTACTAACCAAAGTTGTATATTCATAAGTTGTTTTTTCATAATCTACCTTAACAAGCATATAAATAATACATTAATGCTTATTTATTTGCATAAGCTCTAAAATAAGCCAATCCAAACGGACCCTACTTGGTTCTTAGTTTATCTCCTAGGGTCTAGGGCCAGTTTCTTATCTTTAGAGTATATCTCAAGATTAATTTCCATATTACTTGGTTAATATCATGATTTGTTTATTTATTTAAGATGAGGAGTCTTGTATTTCTATAAATAGGGCTAGTGTTTAGTTTTTTGTATCAAGCCTATTCTCAATTATATTACACCATAATCATATTTATTCTTATTCTTCTGTCTTTTATCTAACATCTCAATTTAACAATCTGGAAATTCTCGCTGACCTACAAAGTATTCACCTGCTTATGTTGTATAGAATGGTTGCATACTGTGTGTGATTCATTACAGGAAATCATACAAGATTTTCTGAAATAAGCATTATATGAGTTGCTATTTATTGTTAATGTCTTCCTAATCCTTTTTGTAGGCACAAGGGTTGCGTAGATGCGTTGAAGAGATTGTGTTCTGCTATACTTACCCCAGGCTAGATATGGAGGTCTGTCTATCAACTGCTCCCACTTTTCTCATATCCTCTCTTATGATCTTTCATGCCATTAAGTTATTTTCATTTACGCACATTCATAATTCCCCCCAAATATGTATCTATATATCAAAGACCAATAATACTTTTGACTAGTTTTCAGTTTTCCAATCTAAATTTTTGCGTTTAACCAAGACTATTTATGTTTCAGGTTTCAAAACACATGAATCATTTGCTTAAAGCACCATTTTGTGTACATCCGAAAACAGGTTAGTATCAAATATGACCACGTACAACTTTTATATTGACTCAAGCTGTTGGGTTTCTTTATGACGAGACTTTACTGATGGCATCATAAGCTATTATTTTTCACCTATGATTTTTCAGACAGAAAACTGAAATATTAAATCTATCTTCTCTTTGGAAATTGTCAGATAGGTTCATTAGATAATTTGATCGTCTAGCATAATTACTTGGTTTGTTTAAGTGCATAATTACTTGGTAATTCTTCTTTATTCTAGGTCGTGTCTGTGTTCCTATTGACCCAAATCGGTGCGACGAGTTTGATCCTACCACAGTACCCACCCTTTTCCAGGTAAATTTATGCAACAATATATATTTTTTATTTGCAACAGAGATGGTTCCCTCTGGCTCAAGTCTTTGCATAGTTTTCATTAGGGATGTTTACATTTATTACTTGGAGTAGGAGGCATTTGCATAAAAGCACTTGCCCCTTTTTCCTATATATTGTCGTGTTGGATAAGAAAAGGCCACCTTTAAGCATATCAATATCTTCTATTAGTATACTGTTTTCTGATAATATTTTCTAGTCATTTTATGTTTATGTGACTCCTGATATTGTGATTTGTAACATTGCAGCTTCTAGATGAGCTTAATAATGAAGGCTTGAGAGCTGATGTTAATGGTGGTATGTAGTTTTATACTTGAACAATCCCGTTTGATTCCTAAACATTTGCAATTTTTATTTGATTATGCCATGTATAGAAGACTTAATAGGGATATTGCATTTTTGGAAACACTGAGAATAGTTCTTTAACATTTTTCAAATTTCTACAAATATTGCATCTGTTTTCACTTTTGAAACATATTTAAGAATGGGGAATTAGTCACTTTAGTCCCTGAATCGGAAGGGATTCGTCATTTTAGTCCCTGAATGCAAACTTCGTTAGTCAATTTAGTCCCTGAATGTAGACTCCGTTAGTCACTTTAGTCCCTGAAATTGACCATGCAGGGACTGTTTTGCAATTTCTCTTCATTCAGGGACTAAAATGACGAATCCTCTCCCATTCAGGGACTAAAGTGACTAATTCCCCTTTTAAGAATTTATAGAAGGCTTAGTTTATAAGTTGGTCCCTACATTTCCATTTTGCAAATCCTTTTCATTGCCATCCCCTCATATCTTCTAATGCTTATTGCATTTTGTCATTAAAAGTGATTTTGATACATTGTTTGGTAGCAGAATGGAGTGGAACTTCCCTTGGAAACTCAGTTACGCTTTTCAGATCGTCGTTCTTAGAACCTTTGCAAAAAGCCTGCAAGGTATGAAACATTTTTAAATTGTTTCTATAGTAAATTCTGATCGAGCAGAAATAATTTTATGTGGAGAATGCTAAAAAATGCTAAAAATCACGATGCCTTTGTTTCTCGTTTAAACATGCACAGATTCTTCCCCTTATTCTTTAGTGTCAGCTAACCAAATTATGTCGATGCTGCTATTGTTAATAATTTGATAACAATATATAAATAAGACTCAGCAGTAACTATCCATCATAACTATTGTTGGTAATGAATACTGCAGGAGGAGATAGAAAGGTCCTATAATTTAAAGTTGCAGCAGTCAAAGAACTCCATAGGTTGGTAG

Protein sequence

>MS.gene049596.t1

MIPQQDSEFDSNFLKPYYGKLFPYADIFKWMSYGNDGKHPGCDQSYFGRREFSFTLNDDFYLRFQSYNNALELENSIKEKCPLKIDIGPVYTVDPAKRHAYAQSDNNVFTPVERELIFDIDMTDYDDVRYCCKGADVCLDCWPLMTIAIKVIDSSLRDDFGFKHILWVYSGRRGVHCWVCDGKARRLTNEQRASVADYFRVYKGNENSHKKVSLMGAALHPFLATSYTNVLKDYFEKVLLTSQNLLATEERYEKILSMIPDESVASELRGKWQDNRRSSSAKEDINVVRWEQCKQLLQSGKHKAQGLRRCVEEIVFCYTYPRLDMEVSKHMNHLLKAPFCVHPKTGRVCVPIDPNRCDEFDPTTVPTLFQLLDELNNEGLRADVNGEWSGTSLGNSVTLFRSSFLEPLQKACKEEIERSYNLKLQQSKNSIGW