Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40723.t1 | PNX54585.1 | 69.9 | 266 | 66 | 2 | 31 | 283 | 4 | 268 | 2.10E-79 | 305.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40723.t1 | Q9FHE1 | 37.8 | 172 | 97 | 4 | 115 | 276 | 264 | 435 | 7.0e-20 | 99.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40723.t1 | A0A2K3JKM3 | 69.9 | 266 | 66 | 2 | 31 | 283 | 4 | 268 | 1.5e-79 | 305.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene40723 | MS.gene90825 | PPI |
| MS.gene40723 | MS.gene97346 | PPI |
| MS.gene40723 | MS.gene029093 | PPI |
| MS.gene40723 | MS.gene066439 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40723.t1 | MTR_7g088160 | 48.980 | 196 | 98 | 2 | 90 | 285 | 72 | 265 | 1.88e-56 | 186 |
| MS.gene40723.t1 | MTR_4g063670 | 50.820 | 183 | 85 | 4 | 99 | 278 | 26 | 206 | 4.36e-49 | 165 |
| MS.gene40723.t1 | MTR_0867s0010 | 49.727 | 183 | 87 | 4 | 99 | 278 | 26 | 206 | 3.77e-43 | 150 |
| MS.gene40723.t1 | MTR_7g107340 | 43.386 | 189 | 78 | 2 | 84 | 271 | 69 | 229 | 2.70e-42 | 148 |
| MS.gene40723.t1 | MTR_4g083510 | 43.229 | 192 | 103 | 5 | 91 | 278 | 18 | 207 | 1.70e-38 | 138 |
| MS.gene40723.t1 | MTR_3g069460 | 47.619 | 147 | 74 | 3 | 99 | 242 | 26 | 172 | 3.29e-35 | 125 |
| MS.gene40723.t1 | MTR_1g051185 | 47.482 | 139 | 69 | 3 | 142 | 278 | 45 | 181 | 5.01e-32 | 119 |
| MS.gene40723.t1 | MTR_7g114170 | 39.316 | 234 | 91 | 6 | 35 | 260 | 7 | 197 | 2.52e-31 | 118 |
| MS.gene40723.t1 | MTR_6g081150 | 38.415 | 164 | 51 | 5 | 86 | 249 | 12 | 125 | 6.64e-23 | 93.2 |
| MS.gene40723.t1 | MTR_1g106885 | 26.316 | 152 | 106 | 1 | 116 | 261 | 144 | 295 | 6.51e-15 | 74.7 |
| MS.gene40723.t1 | MTR_2g022120 | 26.316 | 152 | 106 | 1 | 116 | 261 | 147 | 298 | 7.04e-15 | 74.3 |
| MS.gene40723.t1 | MTR_5g077245 | 26.316 | 152 | 106 | 1 | 116 | 261 | 136 | 287 | 7.97e-15 | 74.3 |
| MS.gene40723.t1 | MTR_7g461350 | 23.750 | 160 | 117 | 1 | 88 | 242 | 92 | 251 | 9.16e-15 | 73.9 |
| MS.gene40723.t1 | MTR_6g016670 | 23.750 | 160 | 117 | 1 | 88 | 242 | 92 | 251 | 9.16e-15 | 73.9 |
| MS.gene40723.t1 | MTR_3g464310 | 23.750 | 160 | 117 | 1 | 88 | 242 | 92 | 251 | 9.16e-15 | 73.9 |
| MS.gene40723.t1 | MTR_3g464170 | 23.125 | 160 | 118 | 1 | 88 | 242 | 92 | 251 | 1.43e-14 | 73.6 |
| MS.gene40723.t1 | MTR_1g100375 | 23.125 | 160 | 118 | 1 | 88 | 242 | 92 | 251 | 1.43e-14 | 73.6 |
| MS.gene40723.t1 | MTR_6g051405 | 23.125 | 160 | 118 | 1 | 88 | 242 | 92 | 251 | 1.78e-14 | 73.2 |
| MS.gene40723.t1 | MTR_3g450670 | 23.077 | 156 | 115 | 1 | 92 | 242 | 92 | 247 | 1.79e-14 | 73.2 |
| MS.gene40723.t1 | MTR_1g471070 | 23.077 | 156 | 115 | 1 | 92 | 242 | 92 | 247 | 1.79e-14 | 73.2 |
| MS.gene40723.t1 | MTR_6g453050 | 24.719 | 178 | 121 | 3 | 97 | 261 | 57 | 234 | 2.42e-14 | 72.4 |
| MS.gene40723.t1 | MTR_8g015740 | 40.127 | 157 | 64 | 8 | 1 | 154 | 1 | 130 | 2.74e-14 | 68.6 |
| MS.gene40723.t1 | MTR_4g026120 | 26.316 | 152 | 106 | 1 | 116 | 261 | 83 | 234 | 3.73e-14 | 72.0 |
| MS.gene40723.t1 | MTR_4g036435 | 26.316 | 152 | 106 | 1 | 116 | 261 | 83 | 234 | 3.73e-14 | 72.0 |
| MS.gene40723.t1 | MTR_6g092533 | 26.027 | 146 | 107 | 1 | 116 | 260 | 147 | 292 | 3.99e-14 | 72.0 |
| MS.gene40723.t1 | MTR_5g066280 | 26.316 | 152 | 106 | 1 | 116 | 261 | 83 | 234 | 4.10e-14 | 71.6 |
| MS.gene40723.t1 | MTR_4g013220 | 26.316 | 152 | 106 | 1 | 116 | 261 | 83 | 234 | 4.26e-14 | 71.6 |
| MS.gene40723.t1 | MTR_3g067785 | 26.316 | 152 | 106 | 1 | 116 | 261 | 83 | 234 | 4.30e-14 | 71.6 |
| MS.gene40723.t1 | MTR_2g072860 | 23.125 | 160 | 118 | 1 | 88 | 242 | 24 | 183 | 9.50e-14 | 70.5 |
| MS.gene40723.t1 | MTR_2g023560 | 58.824 | 51 | 21 | 0 | 118 | 168 | 57 | 107 | 5.57e-13 | 64.7 |
| MS.gene40723.t1 | MTR_1g075060 | 26.404 | 178 | 104 | 5 | 97 | 261 | 108 | 271 | 8.28e-12 | 65.1 |
| MS.gene40723.t1 | MTR_7g083520 | 25.439 | 114 | 85 | 0 | 127 | 240 | 68 | 181 | 2.54e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40723.t1 | AT5G41220 | 39.535 | 172 | 94 | 4 | 115 | 276 | 214 | 385 | 7.53e-25 | 103 |
| MS.gene40723.t1 | AT5G41220 | 39.535 | 172 | 94 | 4 | 115 | 276 | 264 | 435 | 8.89e-25 | 103 |
| MS.gene40723.t1 | AT5G41220 | 39.535 | 172 | 94 | 4 | 115 | 276 | 206 | 377 | 8.96e-25 | 103 |
| MS.gene40723.t1 | AT3G47680 | 37.086 | 151 | 84 | 4 | 118 | 259 | 44 | 192 | 9.33e-23 | 95.9 |
| MS.gene40723.t1 | AT5G41240 | 36.686 | 169 | 96 | 4 | 115 | 272 | 264 | 432 | 7.62e-22 | 95.5 |
| MS.gene40723.t1 | AT1G66235 | 28.571 | 126 | 87 | 2 | 124 | 246 | 7 | 132 | 4.91e-13 | 68.2 |
Find 58 sgRNAs with CRISPR-Local
Find 76 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGCTTCTCCCTTCCATTT+AGG | 0.213354 | 3.2:-88244842 | None:intergenic |
| AACTCCCACGATCGGATCTT+TGG | 0.301608 | 3.2:-88244543 | None:intergenic |
| GAACCGTCACCGGCAGTTAA+TGG | 0.321759 | 3.2:-88244302 | None:intergenic |
| TGTTGAAGGATGAACCTAAA+TGG | 0.353625 | 3.2:+88244828 | MS.gene40723:CDS |
| TTTGAGAACCATCACCGATT+GGG | 0.409235 | 3.2:-88244169 | None:intergenic |
| TGTTGAATAGACATTGTCAT+TGG | 0.417954 | 3.2:+88244672 | MS.gene40723:CDS |
| GTTGTATTCTGAACAATCAA+TGG | 0.420235 | 3.2:-88244936 | None:intergenic |
| TCAACCACCTAGCGTAGAAC+TGG | 0.422168 | 3.2:+88244349 | MS.gene40723:CDS |
| AATTATAGTAATGGTTCCAT+TGG | 0.452755 | 3.2:-88244136 | None:intergenic |
| TTGTATTCTGAACAATCAAT+GGG | 0.457951 | 3.2:-88244935 | None:intergenic |
| AGATCAAAGACATCATCTAC+TGG | 0.478245 | 3.2:+88244881 | MS.gene40723:CDS |
| TTTGCATATAATTATAGTAA+TGG | 0.482649 | 3.2:-88244145 | None:intergenic |
| AATGTTACTTCCACGGAAGA+AGG | 0.498412 | 3.2:+88244437 | MS.gene40723:CDS |
| GCACGCGTGGCGGTTGTTGA+AGG | 0.504466 | 3.2:+88244814 | MS.gene40723:CDS |
| CTGCTAGGGAGTGGTGGTCG+TGG | 0.507126 | 3.2:-88244212 | None:intergenic |
| TATTGAGAACCGTCACTGCT+AGG | 0.510279 | 3.2:-88244227 | None:intergenic |
| AATTATATGCAAACCCCAAT+CGG | 0.514611 | 3.2:+88244155 | MS.gene40723:CDS |
| GCTGTTACTAACAAGAAAAG+TGG | 0.520506 | 3.2:+88244716 | MS.gene40723:CDS |
| GCAGTCTGAGTCCGACATCA+TGG | 0.543761 | 3.2:+88244739 | MS.gene40723:CDS |
| CAATCACCGCCATTAACTGC+CGG | 0.543770 | 3.2:+88244293 | MS.gene40723:CDS |
| AGTGTCAGTGTACTCGACTC+AGG | 0.544532 | 3.2:+88244403 | MS.gene40723:CDS |
| GGAGACTCATAGCGAGGGAG+TGG | 0.545823 | 3.2:+88244624 | MS.gene40723:CDS |
| GATTGAAACATACAAGGTCG+TGG | 0.546490 | 3.2:-88244275 | None:intergenic |
| TTGAGAACCATCACCGATTG+GGG | 0.549171 | 3.2:-88244168 | None:intergenic |
| GGTGATTCCAGTTCTACGCT+AGG | 0.553730 | 3.2:-88244356 | None:intergenic |
| GTCAAATGGATCACAACCAA+TGG | 0.559003 | 3.2:+88244120 | None:intergenic |
| ATTGAGAACCGTCACTGCTA+GGG | 0.559663 | 3.2:-88244226 | None:intergenic |
| GAATCTGTAGTGGATTCAAT+TGG | 0.562646 | 3.2:-88244377 | None:intergenic |
| GAAGGATGAACCTAAATGGA+AGG | 0.565794 | 3.2:+88244832 | MS.gene40723:CDS |
| ATGCAAACCCCAATCGGTGA+TGG | 0.572846 | 3.2:+88244161 | MS.gene40723:CDS |
| CTGTTACTAACAAGAAAAGT+GGG | 0.573605 | 3.2:+88244717 | MS.gene40723:CDS |
| TCTAGAAAATGTTACTTCCA+CGG | 0.579593 | 3.2:+88244430 | MS.gene40723:CDS |
| CCACCACTCCCTAGCAGTGA+CGG | 0.586402 | 3.2:+88244218 | MS.gene40723:CDS |
| CCGCCATTAACTGCCGGTGA+CGG | 0.594377 | 3.2:+88244299 | MS.gene40723:CDS |
| ATAAATTGCTTATTCAAACA+TGG | 0.603441 | 3.2:+88244510 | MS.gene40723:CDS |
| GAACCGTCACTGCTAGGGAG+TGG | 0.603444 | 3.2:-88244221 | None:intergenic |
| ATTGAAACATACAAGGTCGT+GGG | 0.606011 | 3.2:-88244274 | None:intergenic |
| AGAACGCTCTCCTTCTTCCG+TGG | 0.611495 | 3.2:-88244447 | None:intergenic |
| CCGTCACTGCTAGGGAGTGG+TGG | 0.615284 | 3.2:-88244218 | None:intergenic |
| ATGTGCATCATCCATGATGT+CGG | 0.617093 | 3.2:-88244750 | None:intergenic |
| AAGGATGAACCTAAATGGAA+GGG | 0.623792 | 3.2:+88244833 | MS.gene40723:CDS |
| TCAGTGTACTCGACTCAGGT+TGG | 0.627390 | 3.2:+88244407 | MS.gene40723:CDS |
| GGCGGTGATTGAAACATACA+AGG | 0.629344 | 3.2:-88244281 | None:intergenic |
| GATTCCAGTTCTACGCTAGG+TGG | 0.631252 | 3.2:-88244353 | None:intergenic |
| GATCAAAGACATCATCTACT+GGG | 0.635030 | 3.2:+88244882 | MS.gene40723:CDS |
| GTTTCACAATGGAGCACGCG+TGG | 0.636597 | 3.2:+88244801 | MS.gene40723:CDS |
| ATTTCCAAAGATCCGATCGT+GGG | 0.637771 | 3.2:+88244539 | MS.gene40723:CDS |
| GATGGCTATGACAAATATCG+TGG | 0.640937 | 3.2:+88244602 | MS.gene40723:CDS |
| TCGTGGGAGACTCATAGCGA+GGG | 0.641783 | 3.2:+88244619 | MS.gene40723:CDS |
| CATTTCCAAAGATCCGATCG+TGG | 0.644587 | 3.2:+88244538 | MS.gene40723:CDS |
| TGACACTTGAGAATCTGTAG+TGG | 0.652003 | 3.2:-88244387 | None:intergenic |
| ATCGTGGGAGACTCATAGCG+AGG | 0.654193 | 3.2:+88244618 | MS.gene40723:CDS |
| ATGGCTATGACAAATATCGT+GGG | 0.656586 | 3.2:+88244603 | MS.gene40723:CDS |
| ACGTAAAATACGTTTCACAA+TGG | 0.660458 | 3.2:+88244790 | MS.gene40723:CDS |
| GGTCCACACTCAAATCTCGA+TGG | 0.664593 | 3.2:+88244645 | MS.gene40723:CDS |
| TCACAATGGAGCACGCGTGG+CGG | 0.673207 | 3.2:+88244804 | MS.gene40723:CDS |
| CCGTCACCGGCAGTTAATGG+CGG | 0.711408 | 3.2:-88244299 | None:intergenic |
| ATGCCATCGAGATTTGAGTG+TGG | 0.717662 | 3.2:-88244648 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTGCATATAATTATAGTAA+TGG | - | chr3.2:88244148-88244167 | None:intergenic | 15.0% |
| !! | ATAAATTGCTTATTCAAACA+TGG | + | chr3.2:88244510-88244529 | MS.gene40723:CDS | 20.0% |
| ! | AATTATAGTAATGGTTCCAT+TGG | - | chr3.2:88244139-88244158 | None:intergenic | 25.0% |
| ! | TTGTATTCTGAACAATCAAT+GGG | - | chr3.2:88244938-88244957 | None:intergenic | 25.0% |
| AATTATATGCAAACCCCAAT+CGG | + | chr3.2:88244155-88244174 | MS.gene40723:CDS | 30.0% | |
| ACGTAAAATACGTTTCACAA+TGG | + | chr3.2:88244790-88244809 | MS.gene40723:CDS | 30.0% | |
| CTAGGTGGTTGAAAAATAAA+AGG | - | chr3.2:88244341-88244360 | None:intergenic | 30.0% | |
| CTGTTACTAACAAGAAAAGT+GGG | + | chr3.2:88244717-88244736 | MS.gene40723:CDS | 30.0% | |
| GTTGTATTCTGAACAATCAA+TGG | - | chr3.2:88244939-88244958 | None:intergenic | 30.0% | |
| TGTTGAATAGACATTGTCAT+TGG | + | chr3.2:88244672-88244691 | MS.gene40723:CDS | 30.0% | |
| ! | TCTAGAAAATGTTACTTCCA+CGG | + | chr3.2:88244430-88244449 | MS.gene40723:CDS | 30.0% |
| !!! | GTTTTGAGACATAAAAGGTT+GGG | - | chr3.2:88244255-88244274 | None:intergenic | 30.0% |
| !!! | TTTTGAGACATAAAAGGTTG+GGG | - | chr3.2:88244254-88244273 | None:intergenic | 30.0% |
| AAGGATGAACCTAAATGGAA+GGG | + | chr3.2:88244833-88244852 | MS.gene40723:CDS | 35.0% | |
| AGATCAAAGACATCATCTAC+TGG | + | chr3.2:88244881-88244900 | MS.gene40723:CDS | 35.0% | |
| ATGGCTATGACAAATATCGT+GGG | + | chr3.2:88244603-88244622 | MS.gene40723:CDS | 35.0% | |
| ATTGAAACATACAAGGTCGT+GGG | - | chr3.2:88244277-88244296 | None:intergenic | 35.0% | |
| GATCAAAGACATCATCTACT+GGG | + | chr3.2:88244882-88244901 | MS.gene40723:CDS | 35.0% | |
| GCTGTTACTAACAAGAAAAG+TGG | + | chr3.2:88244716-88244735 | MS.gene40723:CDS | 35.0% | |
| GGTTGAAAAATAAAAGGTCG+TGG | - | chr3.2:88244335-88244354 | None:intergenic | 35.0% | |
| TGTTGAAGGATGAACCTAAA+TGG | + | chr3.2:88244828-88244847 | MS.gene40723:CDS | 35.0% | |
| ! | ACCAAAAAGCAGATAGCTTT+TGG | + | chr3.2:88244567-88244586 | MS.gene40723:CDS | 35.0% |
| ! | CAAAAAGCAGATAGCTTTTG+GGG | + | chr3.2:88244569-88244588 | MS.gene40723:CDS | 35.0% |
| ! | CCAAAAAGCAGATAGCTTTT+GGG | + | chr3.2:88244568-88244587 | MS.gene40723:CDS | 35.0% |
| ! | GAACAATCAATGGGATTTTC+TGG | - | chr3.2:88244929-88244948 | None:intergenic | 35.0% |
| !! | GAATCTGTAGTGGATTCAAT+TGG | - | chr3.2:88244380-88244399 | None:intergenic | 35.0% |
| !!! | ACCTGAAACGTTGTTTTTTC+TGG | - | chr3.2:88244475-88244494 | None:intergenic | 35.0% |
| !!! | AGACATTGTCATTGGTTTTG+CGG | + | chr3.2:88244680-88244699 | MS.gene40723:CDS | 35.0% |
| !!! | GGTTTTGAGACATAAAAGGT+TGG | - | chr3.2:88244256-88244275 | None:intergenic | 35.0% |
| ATGTGCATCATCCATGATGT+CGG | - | chr3.2:88244753-88244772 | None:intergenic | 40.0% | |
| ATTGCTTCTCCCTTCCATTT+AGG | - | chr3.2:88244845-88244864 | None:intergenic | 40.0% | |
| ATTTCCAAAGATCCGATCGT+GGG | + | chr3.2:88244539-88244558 | MS.gene40723:CDS | 40.0% | |
| GAAGGATGAACCTAAATGGA+AGG | + | chr3.2:88244832-88244851 | MS.gene40723:CDS | 40.0% | |
| GATGGCTATGACAAATATCG+TGG | + | chr3.2:88244602-88244621 | MS.gene40723:CDS | 40.0% | |
| GATTGAAACATACAAGGTCG+TGG | - | chr3.2:88244278-88244297 | None:intergenic | 40.0% | |
| GCCAGAAAAAACAACGTTTC+AGG | + | chr3.2:88244471-88244490 | MS.gene40723:CDS | 40.0% | |
| TGACACTTGAGAATCTGTAG+TGG | - | chr3.2:88244390-88244409 | None:intergenic | 40.0% | |
| ! | AATGTTACTTCCACGGAAGA+AGG | + | chr3.2:88244437-88244456 | MS.gene40723:CDS | 40.0% |
| ! | TTTGAGAACCATCACCGATT+GGG | - | chr3.2:88244172-88244191 | None:intergenic | 40.0% |
| !! | CCCAAAAGCTATCTGCTTTT+TGG | - | chr3.2:88244571-88244590 | None:intergenic | 40.0% |
| !! | TTTTGAGAACCATCACCGAT+TGG | - | chr3.2:88244173-88244192 | None:intergenic | 40.0% |
| !!! | CGTGGGTTTTGAGACATAAA+AGG | - | chr3.2:88244260-88244279 | None:intergenic | 40.0% |
| !!! | TAGCTTTTGGGGTAGAATCA+AGG | + | chr3.2:88244580-88244599 | MS.gene40723:CDS | 40.0% |
| !!! | TTTTGGGGTAGAATCAAGGA+TGG | + | chr3.2:88244584-88244603 | MS.gene40723:CDS | 40.0% |
| ATGCCATCGAGATTTGAGTG+TGG | - | chr3.2:88244651-88244670 | None:intergenic | 45.0% | |
| ATTGAGAACCGTCACTGCTA+GGG | - | chr3.2:88244229-88244248 | None:intergenic | 45.0% | |
| CATTTCCAAAGATCCGATCG+TGG | + | chr3.2:88244538-88244557 | MS.gene40723:CDS | 45.0% | |
| GGCGGTGATTGAAACATACA+AGG | - | chr3.2:88244284-88244303 | None:intergenic | 45.0% | |
| TATTGAGAACCGTCACTGCT+AGG | - | chr3.2:88244230-88244249 | None:intergenic | 45.0% | |
| ! | TTGAGAACCATCACCGATTG+GGG | - | chr3.2:88244171-88244190 | None:intergenic | 45.0% |
| ! | TTTTGGTCAACTCCCACGAT+CGG | - | chr3.2:88244554-88244573 | None:intergenic | 45.0% |
| !! | TGGATTTTGAGAACCGTCAC+CGG | - | chr3.2:88244315-88244334 | None:intergenic | 45.0% |
| AACTCCCACGATCGGATCTT+TGG | - | chr3.2:88244546-88244565 | None:intergenic | 50.0% | |
| AGTGTCAGTGTACTCGACTC+AGG | + | chr3.2:88244403-88244422 | MS.gene40723:CDS | 50.0% | |
| ATGCAAACCCCAATCGGTGA+TGG | + | chr3.2:88244161-88244180 | MS.gene40723:CDS | 50.0% | |
| CAATCACCGCCATTAACTGC+CGG | + | chr3.2:88244293-88244312 | MS.gene40723:CDS | 50.0% | |
| GATTCCAGTTCTACGCTAGG+TGG | - | chr3.2:88244356-88244375 | None:intergenic | 50.0% | |
| GGTCCACACTCAAATCTCGA+TGG | + | chr3.2:88244645-88244664 | MS.gene40723:CDS | 50.0% | |
| GGTGATTCCAGTTCTACGCT+AGG | - | chr3.2:88244359-88244378 | None:intergenic | 50.0% | |
| TCAACCACCTAGCGTAGAAC+TGG | + | chr3.2:88244349-88244368 | MS.gene40723:CDS | 50.0% | |
| TCAGTGTACTCGACTCAGGT+TGG | + | chr3.2:88244407-88244426 | MS.gene40723:CDS | 50.0% | |
| AGAACGCTCTCCTTCTTCCG+TGG | - | chr3.2:88244450-88244469 | None:intergenic | 55.0% | |
| ATCGTGGGAGACTCATAGCG+AGG | + | chr3.2:88244618-88244637 | MS.gene40723:CDS | 55.0% | |
| GAACCGTCACCGGCAGTTAA+TGG | - | chr3.2:88244305-88244324 | None:intergenic | 55.0% | |
| GCAGTCTGAGTCCGACATCA+TGG | + | chr3.2:88244739-88244758 | MS.gene40723:CDS | 55.0% | |
| GTTTCACAATGGAGCACGCG+TGG | + | chr3.2:88244801-88244820 | MS.gene40723:CDS | 55.0% | |
| TCGTGGGAGACTCATAGCGA+GGG | + | chr3.2:88244619-88244638 | MS.gene40723:CDS | 55.0% | |
| CCACCACTCCCTAGCAGTGA+CGG | + | chr3.2:88244218-88244237 | MS.gene40723:CDS | 60.0% | |
| CCGCCATTAACTGCCGGTGA+CGG | + | chr3.2:88244299-88244318 | MS.gene40723:CDS | 60.0% | |
| CCGTCACCGGCAGTTAATGG+CGG | - | chr3.2:88244302-88244321 | None:intergenic | 60.0% | |
| GAACCGTCACTGCTAGGGAG+TGG | - | chr3.2:88244224-88244243 | None:intergenic | 60.0% | |
| GGAGACTCATAGCGAGGGAG+TGG | + | chr3.2:88244624-88244643 | MS.gene40723:CDS | 60.0% | |
| TCACAATGGAGCACGCGTGG+CGG | + | chr3.2:88244804-88244823 | MS.gene40723:CDS | 60.0% | |
| CCGTCACTGCTAGGGAGTGG+TGG | - | chr3.2:88244221-88244240 | None:intergenic | 65.0% | |
| CTGCTAGGGAGTGGTGGTCG+TGG | - | chr3.2:88244215-88244234 | None:intergenic | 65.0% | |
| GCACGCGTGGCGGTTGTTGA+AGG | + | chr3.2:88244814-88244833 | MS.gene40723:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 88244125 | 88244982 | 88244125 | ID=MS.gene40723 |
| chr3.2 | mRNA | 88244125 | 88244982 | 88244125 | ID=MS.gene40723.t1;Parent=MS.gene40723 |
| chr3.2 | exon | 88244125 | 88244982 | 88244125 | ID=MS.gene40723.t1.exon1;Parent=MS.gene40723.t1 |
| chr3.2 | CDS | 88244125 | 88244982 | 88244125 | ID=cds.MS.gene40723.t1;Parent=MS.gene40723.t1 |
| Gene Sequence |
| Protein sequence |
