Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40830.t1 | XP_003604118.1 | 76.8 | 293 | 8 | 2 | 1 | 233 | 1 | 293 | 3.90E-124 | 454.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40830.t1 | I6YGS0 | 32.9 | 295 | 123 | 7 | 1 | 225 | 1 | 290 | 8.7e-40 | 165.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40830.t1 | G7JUF4 | 76.8 | 293 | 8 | 2 | 1 | 233 | 1 | 293 | 2.8e-124 | 454.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051996 | MS.gene40830 | 0.808 | 3.84E-50 | -1.69E-46 |
| MS.gene05240 | MS.gene40830 | 0.813856 | 2.07E-51 | -1.69E-46 |
| MS.gene053406 | MS.gene40830 | 0.801527 | 8.63E-49 | -1.69E-46 |
| MS.gene054277 | MS.gene40830 | 0.801045 | 1.08E-48 | -1.69E-46 |
| MS.gene054742 | MS.gene40830 | 0.841439 | 4.75E-58 | -1.69E-46 |
| MS.gene056076 | MS.gene40830 | 0.857224 | 1.89E-62 | -1.69E-46 |
| MS.gene056920 | MS.gene40830 | 0.808424 | 3.12E-50 | -1.69E-46 |
| MS.gene061038 | MS.gene40830 | 0.807394 | 5.17E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40830.t1 | MTR_4g005160 | 76.792 | 293 | 8 | 2 | 1 | 233 | 1 | 293 | 1.53e-155 | 434 |
| MS.gene40830.t1 | MTR_7g113030 | 57.000 | 300 | 63 | 6 | 1 | 239 | 1 | 295 | 1.33e-110 | 321 |
| MS.gene40830.t1 | MTR_7g113020 | 56.667 | 300 | 64 | 6 | 1 | 239 | 1 | 295 | 6.37e-109 | 316 |
| MS.gene40830.t1 | MTR_7g113050 | 56.000 | 300 | 66 | 6 | 1 | 239 | 1 | 295 | 4.86e-108 | 314 |
| MS.gene40830.t1 | MTR_7g112620 | 55.333 | 300 | 68 | 6 | 1 | 239 | 1 | 295 | 8.57e-108 | 313 |
| MS.gene40830.t1 | MTR_7g112615 | 55.667 | 300 | 67 | 6 | 1 | 239 | 1 | 295 | 6.75e-107 | 311 |
| MS.gene40830.t1 | MTR_7g112970 | 57.045 | 291 | 63 | 5 | 1 | 233 | 1 | 287 | 8.67e-107 | 311 |
| MS.gene40830.t1 | MTR_7g112960 | 55.102 | 294 | 67 | 5 | 1 | 233 | 1 | 290 | 4.57e-105 | 306 |
| MS.gene40830.t1 | MTR_7g112963 | 54.667 | 300 | 70 | 6 | 1 | 239 | 1 | 295 | 2.71e-103 | 302 |
| MS.gene40830.t1 | MTR_7g113010 | 55.088 | 285 | 63 | 6 | 1 | 224 | 1 | 281 | 2.60e-95 | 290 |
| MS.gene40830.t1 | MTR_4g120240 | 47.619 | 294 | 89 | 4 | 1 | 233 | 37 | 326 | 1.50e-88 | 266 |
| MS.gene40830.t1 | MTR_1g083480 | 81.013 | 158 | 5 | 1 | 1 | 133 | 1 | 158 | 2.51e-87 | 256 |
| MS.gene40830.t1 | MTR_7g108825 | 47.260 | 292 | 91 | 4 | 1 | 233 | 1 | 288 | 2.09e-84 | 254 |
| MS.gene40830.t1 | MTR_7g113050 | 54.772 | 241 | 45 | 4 | 1 | 180 | 1 | 238 | 1.01e-82 | 247 |
| MS.gene40830.t1 | MTR_7g112615 | 54.357 | 241 | 46 | 4 | 1 | 180 | 1 | 238 | 2.91e-81 | 243 |
| MS.gene40830.t1 | MTR_8g076680 | 38.095 | 294 | 119 | 4 | 1 | 235 | 3 | 292 | 2.48e-66 | 208 |
| MS.gene40830.t1 | MTR_7g108825 | 46.444 | 239 | 66 | 3 | 1 | 180 | 1 | 236 | 8.95e-64 | 199 |
| MS.gene40830.t1 | MTR_7g112615 | 60.494 | 162 | 35 | 3 | 1 | 136 | 1 | 159 | 7.07e-61 | 189 |
| MS.gene40830.t1 | MTR_8g076680 | 38.494 | 239 | 85 | 3 | 1 | 180 | 3 | 238 | 5.26e-54 | 174 |
| MS.gene40830.t1 | MTR_2g090240 | 32.997 | 297 | 125 | 8 | 1 | 235 | 1 | 285 | 6.95e-41 | 142 |
| MS.gene40830.t1 | MTR_4g089060 | 30.640 | 297 | 131 | 6 | 1 | 235 | 1 | 284 | 2.59e-40 | 140 |
| MS.gene40830.t1 | MTR_4g089040 | 30.976 | 297 | 130 | 7 | 1 | 235 | 1 | 284 | 1.38e-39 | 139 |
| MS.gene40830.t1 | MTR_2g090245 | 31.313 | 297 | 130 | 8 | 1 | 235 | 1 | 285 | 7.57e-38 | 134 |
| MS.gene40830.t1 | MTR_4g089060 | 28.395 | 324 | 130 | 7 | 1 | 235 | 1 | 311 | 2.34e-35 | 128 |
| MS.gene40830.t1 | MTR_4g089060 | 31.197 | 234 | 92 | 4 | 1 | 173 | 1 | 226 | 6.79e-35 | 124 |
| MS.gene40830.t1 | MTR_3g024250 | 48.182 | 110 | 29 | 2 | 45 | 129 | 1 | 107 | 1.10e-25 | 98.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40830.t1 | AT3G05600 | 49.164 | 299 | 82 | 5 | 1 | 233 | 1 | 295 | 7.28e-97 | 286 |
| MS.gene40830.t1 | AT4G02340 | 45.017 | 291 | 98 | 4 | 1 | 233 | 1 | 287 | 3.73e-84 | 254 |
| MS.gene40830.t1 | AT4G15960 | 44.224 | 303 | 99 | 5 | 1 | 237 | 51 | 349 | 1.14e-79 | 244 |
| MS.gene40830.t1 | AT4G15955 | 46.786 | 280 | 100 | 7 | 3 | 237 | 4 | 279 | 1.92e-74 | 228 |
| MS.gene40830.t1 | AT3G05600 | 46.748 | 246 | 62 | 4 | 1 | 180 | 1 | 243 | 6.61e-72 | 219 |
| MS.gene40830.t1 | AT2G26740 | 45.918 | 294 | 91 | 7 | 4 | 232 | 1 | 291 | 9.13e-71 | 219 |
| MS.gene40830.t1 | AT2G26750 | 44.027 | 293 | 97 | 7 | 4 | 232 | 1 | 290 | 3.12e-66 | 208 |
| MS.gene40830.t1 | AT3G51000 | 39.249 | 293 | 111 | 7 | 3 | 233 | 4 | 291 | 2.72e-61 | 195 |
| MS.gene40830.t1 | AT4G15955 | 49.153 | 177 | 51 | 4 | 3 | 143 | 4 | 177 | 3.64e-49 | 160 |
| MS.gene40830.t1 | AT4G15955 | 48.824 | 170 | 48 | 4 | 3 | 136 | 4 | 170 | 2.35e-46 | 152 |
Find 80 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAGTGGCCCCTGATCTTC+GGG | 0.210716 | 1.2:+59875579 | MS.gene40830:CDS |
| CTATTATGTGTGCAGATTTC+AGG | 0.219315 | 1.2:+59875873 | MS.gene40830:CDS |
| CTCTTGGCGCCATCAGATTC+TGG | 0.252842 | 1.2:+59875534 | MS.gene40830:CDS |
| GCATCATAGTTGTTTACTTT+GGG | 0.258817 | 1.2:-59875826 | None:intergenic |
| GTGCAGTGGCCCCTGATCTT+CGG | 0.304764 | 1.2:+59875578 | MS.gene40830:CDS |
| GTTACTAAATTCAACAAAAC+TGG | 0.304863 | 1.2:+59876208 | MS.gene40830:CDS |
| CAAGAAAGATGTTCCAGGTT+TGG | 0.350912 | 1.2:+59876513 | MS.gene40830:CDS |
| GATGCATTTCATGCCAAGTA+TGG | 0.358360 | 1.2:+59875844 | MS.gene40830:CDS |
| TCACCGTAGCCCCGAAGATC+AGG | 0.368042 | 1.2:-59875589 | None:intergenic |
| CACAGAATAGTAGAAGTAAA+TGG | 0.369517 | 1.2:+59875436 | MS.gene40830:CDS |
| GTGTAGCTGGTCACTGATTC+CGG | 0.373779 | 1.2:-59875622 | None:intergenic |
| TTCAACAAAACTGGCTTCAC+TGG | 0.380968 | 1.2:+59876217 | MS.gene40830:CDS |
| TGCATCATAGTTGTTTACTT+TGG | 0.388996 | 1.2:-59875827 | None:intergenic |
| TGCAGGATATCTTACCATCT+TGG | 0.393575 | 1.2:+59876158 | MS.gene40830:intron |
| TGGAAAAGCCGAAGCCGAAT+TGG | 0.398454 | 1.2:+59876031 | MS.gene40830:CDS |
| TCCCTGAGTTATGGTACTCT+TGG | 0.411714 | 1.2:+59875518 | MS.gene40830:CDS |
| TACTCCAGCCAATTCGGCTT+CGG | 0.419392 | 1.2:-59876039 | None:intergenic |
| ATAATAATCAAGATCTTCTT+CGG | 0.431491 | 1.2:-59876185 | None:intergenic |
| GTACCGGTAAAGTACATTAC+AGG | 0.434050 | 1.2:+59876430 | MS.gene40830:CDS |
| TGCACGGTTTCCCTGAGTTA+TGG | 0.436444 | 1.2:+59875509 | MS.gene40830:CDS |
| GCCCCTGATCTTCGGGGCTA+CGG | 0.442117 | 1.2:+59875586 | MS.gene40830:CDS |
| TGGAGGAAGTGTGGTTGTGC+AGG | 0.442822 | 1.2:+59876533 | MS.gene40830:CDS |
| TCTCCTGTAATGTACTTTAC+CGG | 0.448119 | 1.2:-59876433 | None:intergenic |
| AAAATGCATGTTGGAGAGAA+AGG | 0.449845 | 1.2:+59875463 | MS.gene40830:CDS |
| ATCACCAACAAGGTGAAAAC+AGG | 0.453861 | 1.2:-59875644 | None:intergenic |
| TTTGGGGTTTCTTCCAAGGA+AGG | 0.460713 | 1.2:-59875809 | None:intergenic |
| TTACTTTGGGGTTTCTTCCA+AGG | 0.467534 | 1.2:-59875813 | None:intergenic |
| GGCCACTGCACGGTAACCCT+TGG | 0.471280 | 1.2:-59875566 | None:intergenic |
| GGTTTCAAGAAAGATGTTCC+AGG | 0.471931 | 1.2:+59876508 | MS.gene40830:CDS |
| GTTCCATTCCGACCCTTCCT+TGG | 0.472799 | 1.2:+59875796 | MS.gene40830:CDS |
| AACACCTACTCCAGCCAATT+CGG | 0.482718 | 1.2:-59876045 | None:intergenic |
| AACCACACTTCCTCCAAACC+TGG | 0.486483 | 1.2:-59876526 | None:intergenic |
| AAGGTGAAAACAGGTGTAGC+TGG | 0.497712 | 1.2:-59875635 | None:intergenic |
| CATTACAGGAGATTGTGGTT+TGG | 0.505307 | 1.2:+59876444 | MS.gene40830:CDS |
| ATAATAGTCATCTCCATACT+TGG | 0.505750 | 1.2:-59875857 | None:intergenic |
| GGAAGTGTGGTTGTGCAGGA+AGG | 0.508905 | 1.2:+59876537 | MS.gene40830:CDS |
| CTACGGTGAAACTGAAGCTC+CGG | 0.515024 | 1.2:+59875603 | MS.gene40830:CDS |
| TTGGGGTTTCTTCCAAGGAA+GGG | 0.521536 | 1.2:-59875808 | None:intergenic |
| AAAGCCGAAGCCGAATTGGC+TGG | 0.521985 | 1.2:+59876035 | MS.gene40830:CDS |
| CGCCAAGAGTACCATAACTC+AGG | 0.523914 | 1.2:-59875520 | None:intergenic |
| CATCATAGTTGTTTACTTTG+GGG | 0.527231 | 1.2:-59875825 | None:intergenic |
| AACAAAACTGGCTTCACTGG+AGG | 0.529011 | 1.2:+59876220 | MS.gene40830:CDS |
| GATTCTGGATTTGAGCTCCA+AGG | 0.531726 | 1.2:+59875549 | MS.gene40830:CDS |
| CACCGTAGCCCCGAAGATCA+GGG | 0.541844 | 1.2:-59875588 | None:intergenic |
| CTTCCAAGGAAGGGTCGGAA+TGG | 0.543706 | 1.2:-59875799 | None:intergenic |
| CCAGTGGTGTTGATGTTGCA+CGG | 0.546061 | 1.2:+59875493 | MS.gene40830:CDS |
| GAAAGATGTTCCAGGTTTGG+AGG | 0.547019 | 1.2:+59876516 | MS.gene40830:CDS |
| AATGGCATTAAAATGCATGT+TGG | 0.547604 | 1.2:+59875454 | MS.gene40830:CDS |
| GAAGTGTGGTTGTGCAGGAA+GGG | 0.550084 | 1.2:+59876538 | MS.gene40830:CDS |
| ATTCTGGATTTGAGCTCCAA+GGG | 0.550282 | 1.2:+59875550 | MS.gene40830:CDS |
| CCGTGCAACATCAACACCAC+TGG | 0.550819 | 1.2:-59875493 | None:intergenic |
| AAGTACATTACAGGAGATTG+TGG | 0.554055 | 1.2:+59876439 | MS.gene40830:CDS |
| ACATCACCATGGAGTGAAGT+AGG | 0.556604 | 1.2:+59876397 | MS.gene40830:CDS |
| TGGAACTCTAAGACAAACAT+AGG | 0.558054 | 1.2:-59875779 | None:intergenic |
| GGTTTCTTCCAAGGAAGGGT+CGG | 0.558393 | 1.2:-59875804 | None:intergenic |
| CTCCAAGGGTTACCGTGCAG+TGG | 0.559388 | 1.2:+59875564 | MS.gene40830:CDS |
| ATTGCACTCATTGACTCTCT+AGG | 0.560324 | 1.2:+59875670 | MS.gene40830:CDS |
| ACAAAACTGGCTTCACTGGA+GGG | 0.561868 | 1.2:+59876221 | MS.gene40830:CDS |
| TCTTCTTCGGAAAGCCAAGA+TGG | 0.563903 | 1.2:-59876172 | None:intergenic |
| TTCCAGGTTTGGAGGAAGTG+TGG | 0.567852 | 1.2:+59876524 | MS.gene40830:CDS |
| ATGGTTACTTTCCAGGAACT+GGG | 0.571538 | 1.2:+59876369 | MS.gene40830:intron |
| AGTAGGAGTGGTAAATGTAC+CGG | 0.572295 | 1.2:+59876414 | MS.gene40830:CDS |
| TGATAACATTGATAGGAACC+TGG | 0.573596 | 1.2:+59876011 | MS.gene40830:intron |
| ACCACTCCTACTTCACTCCA+TGG | 0.577429 | 1.2:-59876403 | None:intergenic |
| GAAGATCAGGGGCCACTGCA+CGG | 0.580274 | 1.2:-59875576 | None:intergenic |
| ATACACTACGCCGAGTATGA+AGG | 0.580910 | 1.2:+59876468 | MS.gene40830:CDS |
| AGCTCAAATCCAGAATCTGA+TGG | 0.613338 | 1.2:-59875543 | None:intergenic |
| GCCAAGAGTACCATAACTCA+GGG | 0.614710 | 1.2:-59875519 | None:intergenic |
| CATGTTGGAGAGAAAGGAGA+AGG | 0.616899 | 1.2:+59875469 | MS.gene40830:CDS |
| ACCGTAGCCCCGAAGATCAG+GGG | 0.621226 | 1.2:-59875587 | None:intergenic |
| GCAGTGGCCCCTGATCTTCG+GGG | 0.625803 | 1.2:+59875580 | MS.gene40830:CDS |
| ATGAAGGAATATATCCTCGA+TGG | 0.629060 | 1.2:+59876484 | MS.gene40830:CDS |
| AGGATATATTCCTTCATACT+CGG | 0.633804 | 1.2:-59876478 | None:intergenic |
| ACCATGGAGTGAAGTAGGAG+TGG | 0.635510 | 1.2:+59876402 | MS.gene40830:CDS |
| AAGGAATATATCCTCGATGG+TGG | 0.654767 | 1.2:+59876487 | MS.gene40830:CDS |
| AGAGAAAGGAGAAGGTCCAG+TGG | 0.656472 | 1.2:+59875477 | MS.gene40830:CDS |
| GTTCTGACCAGAAAGAGTCA+AGG | 0.676929 | 1.2:+59875756 | MS.gene40830:intron |
| GTGCAATGATATCACCAACA+AGG | 0.702915 | 1.2:-59875654 | None:intergenic |
| CTTTCTTGAAACCACCATCG+AGG | 0.706418 | 1.2:-59876498 | None:intergenic |
| ACTGGGAGCTAACATCACCA+TGG | 0.711994 | 1.2:+59876386 | MS.gene40830:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACTAAATACAACAAAATTT+AGG | + | chr1.2:59875967-59875986 | MS.gene40830:intron | 15.0% |
| !! | ATAATAATCAAGATCTTCTT+CGG | - | chr1.2:59876188-59876207 | None:intergenic | 20.0% |
| !! | CTTTAGTATATATAAAGACA+TGG | + | chr1.2:59875922-59875941 | MS.gene40830:intron | 20.0% |
| !!! | ACTTTATTGATAACATTGAT+AGG | + | chr1.2:59876004-59876023 | MS.gene40830:intron | 20.0% |
| ! | GTTACTAAATTCAACAAAAC+TGG | + | chr1.2:59876208-59876227 | MS.gene40830:CDS | 25.0% |
| AATGGCATTAAAATGCATGT+TGG | + | chr1.2:59875454-59875473 | MS.gene40830:CDS | 30.0% | |
| AGGATATATTCCTTCATACT+CGG | - | chr1.2:59876481-59876500 | None:intergenic | 30.0% | |
| ATAATAGTCATCTCCATACT+TGG | - | chr1.2:59875860-59875879 | None:intergenic | 30.0% | |
| CACAGAATAGTAGAAGTAAA+TGG | + | chr1.2:59875436-59875455 | MS.gene40830:CDS | 30.0% | |
| CATCATAGTTGTTTACTTTG+GGG | - | chr1.2:59875828-59875847 | None:intergenic | 30.0% | |
| CATCATGTTACGCAAAAAAT+AGG | - | chr1.2:59876072-59876091 | None:intergenic | 30.0% | |
| GCATCATAGTTGTTTACTTT+GGG | - | chr1.2:59875829-59875848 | None:intergenic | 30.0% | |
| TGCATCATAGTTGTTTACTT+TGG | - | chr1.2:59875830-59875849 | None:intergenic | 30.0% | |
| AAAATGCATGTTGGAGAGAA+AGG | + | chr1.2:59875463-59875482 | MS.gene40830:CDS | 35.0% | |
| AAGTACATTACAGGAGATTG+TGG | + | chr1.2:59876439-59876458 | MS.gene40830:CDS | 35.0% | |
| ATGAAGGAATATATCCTCGA+TGG | + | chr1.2:59876484-59876503 | MS.gene40830:CDS | 35.0% | |
| CATTATCAGCTAGTGAAAAG+AGG | - | chr1.2:59876352-59876371 | None:intergenic | 35.0% | |
| CTATTATGTGTGCAGATTTC+AGG | + | chr1.2:59875873-59875892 | MS.gene40830:CDS | 35.0% | |
| TCTCCTGTAATGTACTTTAC+CGG | - | chr1.2:59876436-59876455 | None:intergenic | 35.0% | |
| TGATAACATTGATAGGAACC+TGG | + | chr1.2:59876011-59876030 | MS.gene40830:intron | 35.0% | |
| ! | AATTTTCCCAAAAGGAGGTA+TGG | + | chr1.2:59876115-59876134 | MS.gene40830:intron | 35.0% |
| ! | CTCTTTTCACTAGCTGATAA+TGG | + | chr1.2:59876350-59876369 | MS.gene40830:intron | 35.0% |
| !! | ATACCTCCTTTTGGGAAAAT+TGG | - | chr1.2:59876116-59876135 | None:intergenic | 35.0% |
| !! | TGGAACTCTAAGACAAACAT+AGG | - | chr1.2:59875782-59875801 | None:intergenic | 35.0% |
| AAGGAATATATCCTCGATGG+TGG | + | chr1.2:59876487-59876506 | MS.gene40830:CDS | 40.0% | |
| AGCTCAAATCCAGAATCTGA+TGG | - | chr1.2:59875546-59875565 | None:intergenic | 40.0% | |
| AGTAGGAGTGGTAAATGTAC+CGG | + | chr1.2:59876414-59876433 | MS.gene40830:CDS | 40.0% | |
| ATCACCAACAAGGTGAAAAC+AGG | - | chr1.2:59875647-59875666 | None:intergenic | 40.0% | |
| ATTCTGGATTTGAGCTCCAA+GGG | + | chr1.2:59875550-59875569 | MS.gene40830:CDS | 40.0% | |
| CAAGAAAGATGTTCCAGGTT+TGG | + | chr1.2:59876513-59876532 | MS.gene40830:CDS | 40.0% | |
| CATTACAGGAGATTGTGGTT+TGG | + | chr1.2:59876444-59876463 | MS.gene40830:CDS | 40.0% | |
| GATGCATTTCATGCCAAGTA+TGG | + | chr1.2:59875844-59875863 | MS.gene40830:CDS | 40.0% | |
| GGTAAGATATCCTGCATATC+CGG | - | chr1.2:59876154-59876173 | None:intergenic | 40.0% | |
| GGTTTCAAGAAAGATGTTCC+AGG | + | chr1.2:59876508-59876527 | MS.gene40830:CDS | 40.0% | |
| GTATGGAACTGGATTCAATC+CGG | + | chr1.2:59876132-59876151 | MS.gene40830:intron | 40.0% | |
| GTGCAATGATATCACCAACA+AGG | - | chr1.2:59875657-59875676 | None:intergenic | 40.0% | |
| TGCAGGATATCTTACCATCT+TGG | + | chr1.2:59876158-59876177 | MS.gene40830:intron | 40.0% | |
| ! | AATGGTTACTTTCCAGGAAC+TGG | + | chr1.2:59876368-59876387 | MS.gene40830:intron | 40.0% |
| ! | ATGGTTACTTTCCAGGAACT+GGG | + | chr1.2:59876369-59876388 | MS.gene40830:intron | 40.0% |
| ! | GTACCGGTAAAGTACATTAC+AGG | + | chr1.2:59876430-59876449 | MS.gene40830:CDS | 40.0% |
| ! | TACACCTGTTTTCACCTTGT+TGG | + | chr1.2:59875640-59875659 | MS.gene40830:CDS | 40.0% |
| ! | TTCAACAAAACTGGCTTCAC+TGG | + | chr1.2:59876217-59876236 | MS.gene40830:CDS | 40.0% |
| !! | ATTGCACTCATTGACTCTCT+AGG | + | chr1.2:59875670-59875689 | MS.gene40830:CDS | 40.0% |
| !! | GCTGATAATGGTTACTTTCC+AGG | + | chr1.2:59876362-59876381 | MS.gene40830:intron | 40.0% |
| !! | TTACTTTGGGGTTTCTTCCA+AGG | - | chr1.2:59875816-59875835 | None:intergenic | 40.0% |
| !! | TTTTGGGAAAATTGGAGGAC+CGG | - | chr1.2:59876108-59876127 | None:intergenic | 40.0% |
| AACACCTACTCCAGCCAATT+CGG | - | chr1.2:59876048-59876067 | None:intergenic | 45.0% | |
| AAGGTGAAAACAGGTGTAGC+TGG | - | chr1.2:59875638-59875657 | None:intergenic | 45.0% | |
| ACATAGGCCTTGACTCTTTC+TGG | - | chr1.2:59875766-59875785 | None:intergenic | 45.0% | |
| ACATCACCATGGAGTGAAGT+AGG | + | chr1.2:59876397-59876416 | MS.gene40830:CDS | 45.0% | |
| ATACACTACGCCGAGTATGA+AGG | + | chr1.2:59876468-59876487 | MS.gene40830:CDS | 45.0% | |
| ATGATGACAACGAGGAAACC+CGG | + | chr1.2:59876086-59876105 | MS.gene40830:intron | 45.0% | |
| CATGTTGGAGAGAAAGGAGA+AGG | + | chr1.2:59875469-59875488 | MS.gene40830:CDS | 45.0% | |
| CTTTCTTGAAACCACCATCG+AGG | - | chr1.2:59876501-59876520 | None:intergenic | 45.0% | |
| GAAAGATGTTCCAGGTTTGG+AGG | + | chr1.2:59876516-59876535 | MS.gene40830:CDS | 45.0% | |
| GATTCTGGATTTGAGCTCCA+AGG | + | chr1.2:59875549-59875568 | MS.gene40830:CDS | 45.0% | |
| GTACCTTGTCGGACATGATT+GGG | + | chr1.2:59875705-59875724 | MS.gene40830:intron | 45.0% | |
| GTGGACAAAGTGTACCTTGT+CGG | + | chr1.2:59875694-59875713 | MS.gene40830:intron | 45.0% | |
| GTTCTGACCAGAAAGAGTCA+AGG | + | chr1.2:59875756-59875775 | MS.gene40830:intron | 45.0% | |
| TACCTTGTCGGACATGATTG+GGG | + | chr1.2:59875706-59875725 | MS.gene40830:intron | 45.0% | |
| TCCCTGAGTTATGGTACTCT+TGG | + | chr1.2:59875518-59875537 | MS.gene40830:CDS | 45.0% | |
| TCTTCTTCGGAAAGCCAAGA+TGG | - | chr1.2:59876175-59876194 | None:intergenic | 45.0% | |
| TGCGTAACATGATGACAACG+AGG | + | chr1.2:59876078-59876097 | MS.gene40830:intron | 45.0% | |
| TGGATTCAATCCGGATATGC+AGG | + | chr1.2:59876141-59876160 | MS.gene40830:intron | 45.0% | |
| TGTACCTTGTCGGACATGAT+TGG | + | chr1.2:59875704-59875723 | MS.gene40830:intron | 45.0% | |
| TTGGGGTTTCTTCCAAGGAA+GGG | - | chr1.2:59875811-59875830 | None:intergenic | 45.0% | |
| TTTGGGAAAATTGGAGGACC+GGG | - | chr1.2:59876107-59876126 | None:intergenic | 45.0% | |
| ! | AACAAAACTGGCTTCACTGG+AGG | + | chr1.2:59876220-59876239 | MS.gene40830:CDS | 45.0% |
| ! | ACAAAACTGGCTTCACTGGA+GGG | + | chr1.2:59876221-59876240 | MS.gene40830:CDS | 45.0% |
| ! | CCAGTTCCATACCTCCTTTT+GGG | - | chr1.2:59876124-59876143 | None:intergenic | 45.0% |
| ! | CCTCCAATTTTCCCAAAAGG+AGG | + | chr1.2:59876110-59876129 | MS.gene40830:intron | 45.0% |
| ! | GGTCCTCCAATTTTCCCAAA+AGG | + | chr1.2:59876107-59876126 | MS.gene40830:intron | 45.0% |
| ! | TCCAGTTCCATACCTCCTTT+TGG | - | chr1.2:59876125-59876144 | None:intergenic | 45.0% |
| ! | TTTGGGGTTTCTTCCAAGGA+AGG | - | chr1.2:59875812-59875831 | None:intergenic | 45.0% |
| !! | ACTCATTGACTCTCTAGGTG+TGG | + | chr1.2:59875675-59875694 | MS.gene40830:intron | 45.0% |
| !! | CCTCCTTTTGGGAAAATTGG+AGG | - | chr1.2:59876113-59876132 | None:intergenic | 45.0% |
| !! | GCCAAGAGTACCATAACTCA+GGG | - | chr1.2:59875522-59875541 | None:intergenic | 45.0% |
| !! | CAAAATTTATAAAAATAAAA+AGG | + | chr1.2:59876304-59876323 | MS.gene40830:intron | 5.0% |
| !!! | CTTTTTATTTTTATAAATTT+TGG | - | chr1.2:59876306-59876325 | None:intergenic | 5.0% |
| AACCACACTTCCTCCAAACC+TGG | - | chr1.2:59876529-59876548 | None:intergenic | 50.0% | |
| ACCACTCCTACTTCACTCCA+TGG | - | chr1.2:59876406-59876425 | None:intergenic | 50.0% | |
| ACCATGGAGTGAAGTAGGAG+TGG | + | chr1.2:59876402-59876421 | MS.gene40830:CDS | 50.0% | |
| ACTGGGAGCTAACATCACCA+TGG | + | chr1.2:59876386-59876405 | MS.gene40830:CDS | 50.0% | |
| AGAGAAAGGAGAAGGTCCAG+TGG | + | chr1.2:59875477-59875496 | MS.gene40830:CDS | 50.0% | |
| CATGATTGGGGTGCGATCAT+CGG | + | chr1.2:59875718-59875737 | MS.gene40830:intron | 50.0% | |
| CTACGGTGAAACTGAAGCTC+CGG | + | chr1.2:59875603-59875622 | MS.gene40830:CDS | 50.0% | |
| GAAGTGTGGTTGTGCAGGAA+GGG | + | chr1.2:59876538-59876557 | MS.gene40830:CDS | 50.0% | |
| GGTTTCTTCCAAGGAAGGGT+CGG | - | chr1.2:59875807-59875826 | None:intergenic | 50.0% | |
| TACTCCAGCCAATTCGGCTT+CGG | - | chr1.2:59876042-59876061 | None:intergenic | 50.0% | |
| TGATGTTAGCTCCCAGTTCC+TGG | - | chr1.2:59876383-59876402 | None:intergenic | 50.0% | |
| TGCACGGTTTCCCTGAGTTA+TGG | + | chr1.2:59875509-59875528 | MS.gene40830:CDS | 50.0% | |
| TGGAAAAGCCGAAGCCGAAT+TGG | + | chr1.2:59876031-59876050 | MS.gene40830:CDS | 50.0% | |
| TTCCAGGTTTGGAGGAAGTG+TGG | + | chr1.2:59876524-59876543 | MS.gene40830:CDS | 50.0% | |
| ! | AATTCGGCTTCGGCTTTTCC+AGG | - | chr1.2:59876032-59876051 | None:intergenic | 50.0% |
| ! | CCCAAAAGGAGGTATGGAAC+TGG | + | chr1.2:59876121-59876140 | MS.gene40830:intron | 50.0% |
| !! | CCAGTGGTGTTGATGTTGCA+CGG | + | chr1.2:59875493-59875512 | MS.gene40830:CDS | 50.0% |
| !! | CGCCAAGAGTACCATAACTC+AGG | - | chr1.2:59875523-59875542 | None:intergenic | 50.0% |
| !! | GTGTAGCTGGTCACTGATTC+CGG | - | chr1.2:59875625-59875644 | None:intergenic | 50.0% |
| AAAGCCGAAGCCGAATTGGC+TGG | + | chr1.2:59876035-59876054 | MS.gene40830:CDS | 55.0% | |
| ATTGGGGTGCGATCATCGGT+TGG | + | chr1.2:59875722-59875741 | MS.gene40830:intron | 55.0% | |
| CACCCCAATCATGTCCGACA+AGG | - | chr1.2:59875711-59875730 | None:intergenic | 55.0% | |
| CCGTGCAACATCAACACCAC+TGG | - | chr1.2:59875496-59875515 | None:intergenic | 55.0% | |
| CTCTTGGCGCCATCAGATTC+TGG | + | chr1.2:59875534-59875553 | MS.gene40830:CDS | 55.0% | |
| CTTCCAAGGAAGGGTCGGAA+TGG | - | chr1.2:59875802-59875821 | None:intergenic | 55.0% | |
| GAAGCCGAATTGGCTGGAGT+AGG | + | chr1.2:59876041-59876060 | MS.gene40830:intron | 55.0% | |
| GTTCCATTCCGACCCTTCCT+TGG | + | chr1.2:59875796-59875815 | MS.gene40830:CDS | 55.0% | |
| ! | GGAAGTGTGGTTGTGCAGGA+AGG | + | chr1.2:59876537-59876556 | MS.gene40830:CDS | 55.0% |
| ! | TGGAGGAAGTGTGGTTGTGC+AGG | + | chr1.2:59876533-59876552 | MS.gene40830:CDS | 55.0% |
| ACCGTAGCCCCGAAGATCAG+GGG | - | chr1.2:59875590-59875609 | None:intergenic | 60.0% | |
| CACCGTAGCCCCGAAGATCA+GGG | - | chr1.2:59875591-59875610 | None:intergenic | 60.0% | |
| CTCCAAGGGTTACCGTGCAG+TGG | + | chr1.2:59875564-59875583 | MS.gene40830:CDS | 60.0% | |
| GAAGATCAGGGGCCACTGCA+CGG | - | chr1.2:59875579-59875598 | None:intergenic | 60.0% | |
| GTGCAGTGGCCCCTGATCTT+CGG | + | chr1.2:59875578-59875597 | MS.gene40830:CDS | 60.0% | |
| TCACCGTAGCCCCGAAGATC+AGG | - | chr1.2:59875592-59875611 | None:intergenic | 60.0% | |
| TGCAGTGGCCCCTGATCTTC+GGG | + | chr1.2:59875579-59875598 | MS.gene40830:CDS | 60.0% | |
| GCAGTGGCCCCTGATCTTCG+GGG | + | chr1.2:59875580-59875599 | MS.gene40830:CDS | 65.0% | |
| GCCCCTGATCTTCGGGGCTA+CGG | + | chr1.2:59875586-59875605 | MS.gene40830:CDS | 65.0% | |
| GGCCACTGCACGGTAACCCT+TGG | - | chr1.2:59875569-59875588 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 59875421 | 59876564 | 59875421 | ID=MS.gene40830 |
| chr1.2 | mRNA | 59875421 | 59876564 | 59875421 | ID=MS.gene40830.t1;Parent=MS.gene40830 |
| chr1.2 | exon | 59875421 | 59875691 | 59875421 | ID=MS.gene40830.t1.exon1;Parent=MS.gene40830.t1 |
| chr1.2 | CDS | 59875421 | 59875691 | 59875421 | ID=cds.MS.gene40830.t1;Parent=MS.gene40830.t1 |
| chr1.2 | exon | 59875767 | 59875894 | 59875767 | ID=MS.gene40830.t1.exon2;Parent=MS.gene40830.t1 |
| chr1.2 | CDS | 59875767 | 59875894 | 59875767 | ID=cds.MS.gene40830.t1;Parent=MS.gene40830.t1 |
| chr1.2 | exon | 59876026 | 59876058 | 59876026 | ID=MS.gene40830.t1.exon3;Parent=MS.gene40830.t1 |
| chr1.2 | CDS | 59876026 | 59876058 | 59876026 | ID=cds.MS.gene40830.t1;Parent=MS.gene40830.t1 |
| chr1.2 | exon | 59876163 | 59876269 | 59876163 | ID=MS.gene40830.t1.exon4;Parent=MS.gene40830.t1 |
| chr1.2 | CDS | 59876163 | 59876269 | 59876163 | ID=cds.MS.gene40830.t1;Parent=MS.gene40830.t1 |
| chr1.2 | exon | 59876384 | 59876564 | 59876384 | ID=MS.gene40830.t1.exon5;Parent=MS.gene40830.t1 |
| chr1.2 | CDS | 59876384 | 59876564 | 59876384 | ID=cds.MS.gene40830.t1;Parent=MS.gene40830.t1 |
| Gene Sequence |
| Protein sequence |
