Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene40927.t1 | XP_024635380.1 | 98.7 | 466 | 5 | 1 | 1 | 466 | 1 | 465 | 1.60E-254 | 888.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene40927.t1 | Q38967 | 66.9 | 465 | 148 | 3 | 11 | 469 | 29 | 493 | 4.3e-184 | 645.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene40927.t1 | G8A1P0 | 98.7 | 466 | 5 | 1 | 1 | 466 | 1 | 465 | 1.1e-254 | 888.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049264 | MS.gene40927 | 0.926511 | 4.24E-91 | -1.69E-46 |
MS.gene049378 | MS.gene40927 | 0.800487 | 1.41E-48 | -1.69E-46 |
MS.gene054479 | MS.gene40927 | 0.810029 | 1.41E-50 | -1.69E-46 |
MS.gene055313 | MS.gene40927 | 0.814753 | 1.31E-51 | -1.69E-46 |
MS.gene055827 | MS.gene40927 | 0.804536 | 2.06E-49 | -1.69E-46 |
MS.gene055864 | MS.gene40927 | 0.802905 | 4.49E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene40927.t1 | MTR_3g096830 | 98.712 | 466 | 5 | 1 | 1 | 466 | 1 | 465 | 0.0 | 936 |
MS.gene40927.t1 | MTR_8g094290 | 70.753 | 465 | 128 | 2 | 7 | 469 | 17 | 475 | 0.0 | 698 |
MS.gene40927.t1 | MTR_3g096800 | 71.368 | 468 | 131 | 2 | 4 | 469 | 11 | 477 | 0.0 | 697 |
MS.gene40927.t1 | MTR_3g096840 | 69.481 | 462 | 139 | 1 | 7 | 466 | 19 | 480 | 0.0 | 677 |
MS.gene40927.t1 | MTR_3g088455 | 67.516 | 471 | 146 | 3 | 4 | 469 | 11 | 479 | 0.0 | 677 |
MS.gene40927.t1 | MTR_3g088475 | 66.949 | 472 | 148 | 4 | 4 | 469 | 11 | 480 | 0.0 | 662 |
MS.gene40927.t1 | MTR_4g073520 | 63.674 | 479 | 163 | 3 | 2 | 469 | 34 | 512 | 0.0 | 645 |
MS.gene40927.t1 | MTR_4g073520 | 63.674 | 479 | 163 | 3 | 2 | 469 | 34 | 512 | 0.0 | 645 |
MS.gene40927.t1 | MTR_1g029750 | 66.737 | 472 | 146 | 4 | 4 | 469 | 17 | 483 | 0.0 | 644 |
MS.gene40927.t1 | MTR_3g110660 | 56.438 | 466 | 196 | 4 | 7 | 465 | 13 | 478 | 0.0 | 540 |
MS.gene40927.t1 | MTR_1g007380 | 56.077 | 469 | 199 | 4 | 7 | 468 | 3 | 471 | 0.0 | 538 |
MS.gene40927.t1 | MTR_1g105980 | 56.018 | 457 | 194 | 4 | 16 | 465 | 11 | 467 | 0.0 | 530 |
MS.gene40927.t1 | MTR_3g088465 | 66.755 | 376 | 117 | 4 | 4 | 373 | 11 | 384 | 0.0 | 526 |
MS.gene40927.t1 | MTR_1g105990 | 56.923 | 455 | 186 | 5 | 16 | 460 | 10 | 464 | 0.0 | 516 |
MS.gene40927.t1 | MTR_1g106000 | 54.684 | 459 | 192 | 5 | 26 | 468 | 14 | 472 | 3.18e-179 | 510 |
MS.gene40927.t1 | MTR_1g105995 | 52.766 | 470 | 213 | 5 | 6 | 468 | 2 | 469 | 3.30e-178 | 508 |
MS.gene40927.t1 | MTR_3g461440 | 51.345 | 446 | 210 | 3 | 15 | 455 | 11 | 454 | 3.50e-166 | 477 |
MS.gene40927.t1 | MTR_3g461470 | 51.121 | 446 | 211 | 3 | 15 | 455 | 11 | 454 | 1.01e-163 | 470 |
MS.gene40927.t1 | MTR_1g007270 | 49.467 | 469 | 224 | 6 | 2 | 465 | 9 | 469 | 5.93e-163 | 469 |
MS.gene40927.t1 | MTR_5g096840 | 50.228 | 438 | 210 | 4 | 24 | 455 | 26 | 461 | 3.81e-160 | 461 |
MS.gene40927.t1 | MTR_3g110420 | 49.682 | 471 | 227 | 5 | 1 | 465 | 1 | 467 | 1.00e-158 | 458 |
MS.gene40927.t1 | MTR_3g461430 | 50.457 | 438 | 210 | 3 | 25 | 457 | 28 | 463 | 2.79e-158 | 458 |
MS.gene40927.t1 | MTR_1g007180 | 48.775 | 449 | 225 | 3 | 21 | 465 | 6 | 453 | 5.64e-158 | 456 |
MS.gene40927.t1 | MTR_3g061390 | 50.340 | 441 | 212 | 3 | 20 | 455 | 16 | 454 | 8.11e-158 | 455 |
MS.gene40927.t1 | MTR_2g031750 | 49.556 | 450 | 222 | 3 | 20 | 465 | 5 | 453 | 2.97e-156 | 451 |
MS.gene40927.t1 | MTR_1g007240 | 48.444 | 450 | 227 | 3 | 21 | 466 | 6 | 454 | 2.99e-153 | 444 |
MS.gene40927.t1 | MTR_3g461480 | 49.660 | 441 | 214 | 4 | 21 | 455 | 21 | 459 | 2.14e-150 | 437 |
MS.gene40927.t1 | MTR_3g110430 | 47.333 | 450 | 230 | 4 | 21 | 465 | 55 | 502 | 1.37e-138 | 408 |
MS.gene40927.t1 | MTR_3g110660 | 59.697 | 330 | 129 | 3 | 7 | 332 | 13 | 342 | 4.31e-135 | 394 |
MS.gene40927.t1 | MTR_5g096850 | 44.266 | 436 | 235 | 4 | 26 | 455 | 24 | 457 | 8.57e-132 | 389 |
MS.gene40927.t1 | MTR_2g031750 | 47.769 | 381 | 194 | 3 | 89 | 465 | 7 | 386 | 2.28e-122 | 362 |
MS.gene40927.t1 | MTR_3g461440 | 52.830 | 318 | 143 | 3 | 143 | 455 | 2 | 317 | 7.11e-120 | 353 |
MS.gene40927.t1 | MTR_5g017200 | 64.015 | 264 | 81 | 4 | 7 | 270 | 15 | 264 | 4.23e-108 | 322 |
MS.gene40927.t1 | MTR_3g110420 | 47.463 | 335 | 170 | 3 | 1 | 332 | 1 | 332 | 1.04e-104 | 315 |
MS.gene40927.t1 | MTR_1g007180 | 47.667 | 300 | 152 | 3 | 170 | 465 | 71 | 369 | 5.53e-95 | 291 |
MS.gene40927.t1 | MTR_6g022790 | 29.185 | 466 | 286 | 11 | 12 | 463 | 17 | 452 | 1.10e-50 | 179 |
MS.gene40927.t1 | MTR_1g007190 | 46.154 | 221 | 82 | 5 | 37 | 257 | 20 | 203 | 2.30e-49 | 167 |
MS.gene40927.t1 | MTR_8g080120 | 28.319 | 452 | 286 | 10 | 23 | 466 | 15 | 436 | 8.50e-46 | 165 |
MS.gene40927.t1 | MTR_2g101920 | 28.289 | 456 | 282 | 10 | 23 | 466 | 39 | 461 | 1.27e-45 | 165 |
MS.gene40927.t1 | MTR_4g103890 | 28.959 | 442 | 276 | 10 | 28 | 463 | 11 | 420 | 5.42e-45 | 162 |
MS.gene40927.t1 | MTR_1g070470 | 27.468 | 466 | 298 | 12 | 10 | 465 | 2 | 437 | 4.54e-43 | 158 |
MS.gene40927.t1 | MTR_3g005740 | 28.409 | 440 | 285 | 7 | 28 | 463 | 53 | 466 | 6.57e-43 | 158 |
MS.gene40927.t1 | MTR_7g038910 | 29.677 | 465 | 269 | 12 | 21 | 462 | 10 | 439 | 2.69e-41 | 153 |
MS.gene40927.t1 | MTR_6g022780 | 29.252 | 441 | 277 | 9 | 28 | 463 | 15 | 425 | 3.01e-39 | 147 |
MS.gene40927.t1 | MTR_6g023065 | 29.412 | 442 | 276 | 10 | 27 | 463 | 50 | 460 | 3.49e-39 | 147 |
MS.gene40927.t1 | MTR_5g054730 | 29.387 | 473 | 286 | 13 | 6 | 466 | 3 | 439 | 4.55e-39 | 147 |
MS.gene40927.t1 | MTR_7g038910 | 29.427 | 384 | 211 | 12 | 21 | 380 | 10 | 357 | 2.58e-38 | 143 |
MS.gene40927.t1 | MTR_7g038910 | 29.668 | 391 | 217 | 12 | 21 | 388 | 10 | 365 | 2.64e-38 | 144 |
MS.gene40927.t1 | MTR_6g023075 | 28.540 | 452 | 284 | 10 | 21 | 463 | 4 | 425 | 4.27e-38 | 144 |
MS.gene40927.t1 | MTR_2g096830 | 29.204 | 452 | 281 | 10 | 21 | 463 | 4 | 425 | 1.45e-36 | 140 |
MS.gene40927.t1 | MTR_3g085820 | 29.367 | 395 | 234 | 12 | 4 | 388 | 9 | 368 | 4.92e-36 | 137 |
MS.gene40927.t1 | MTR_1g093020 | 27.447 | 470 | 290 | 14 | 10 | 466 | 6 | 437 | 5.70e-35 | 135 |
MS.gene40927.t1 | MTR_1g093020 | 28.341 | 434 | 260 | 14 | 10 | 430 | 6 | 401 | 1.43e-34 | 134 |
MS.gene40927.t1 | MTR_4g055610 | 27.716 | 451 | 289 | 14 | 26 | 467 | 39 | 461 | 5.92e-33 | 130 |
MS.gene40927.t1 | MTR_2g096830 | 30.178 | 338 | 209 | 9 | 21 | 348 | 4 | 324 | 1.34e-32 | 127 |
MS.gene40927.t1 | MTR_1g093030 | 25.738 | 474 | 299 | 12 | 7 | 466 | 3 | 437 | 3.61e-32 | 127 |
MS.gene40927.t1 | MTR_0531s0020 | 29.143 | 350 | 220 | 8 | 3 | 342 | 21 | 352 | 4.42e-32 | 126 |
MS.gene40927.t1 | MTR_8g099320 | 26.360 | 478 | 304 | 16 | 10 | 468 | 2 | 450 | 1.19e-31 | 126 |
MS.gene40927.t1 | MTR_1g492640 | 27.416 | 445 | 272 | 18 | 38 | 466 | 70 | 479 | 6.00e-27 | 113 |
MS.gene40927.t1 | MTR_4g075750 | 24.580 | 476 | 303 | 14 | 16 | 464 | 55 | 501 | 2.16e-24 | 106 |
MS.gene40927.t1 | MTR_3g115090 | 25.107 | 466 | 277 | 18 | 21 | 455 | 74 | 498 | 2.77e-24 | 105 |
MS.gene40927.t1 | MTR_5g081630 | 25.721 | 416 | 262 | 13 | 58 | 465 | 4 | 380 | 4.71e-21 | 95.1 |
MS.gene40927.t1 | MTR_5g023260 | 23.831 | 449 | 282 | 16 | 27 | 452 | 107 | 518 | 8.55e-21 | 95.5 |
MS.gene40927.t1 | MTR_1g492640 | 27.596 | 366 | 216 | 16 | 116 | 466 | 16 | 347 | 1.56e-18 | 87.0 |
MS.gene40927.t1 | MTR_5g023240 | 23.877 | 423 | 267 | 16 | 28 | 430 | 87 | 474 | 1.67e-17 | 85.5 |
MS.gene40927.t1 | MTR_3g069960 | 23.871 | 465 | 298 | 16 | 17 | 465 | 9 | 433 | 1.24e-15 | 79.3 |
MS.gene40927.t1 | MTR_3g069960 | 26.799 | 403 | 244 | 18 | 73 | 465 | 19 | 380 | 1.44e-15 | 78.6 |
MS.gene40927.t1 | MTR_4g104510 | 23.690 | 477 | 306 | 18 | 1 | 465 | 15 | 445 | 4.13e-15 | 77.8 |
MS.gene40927.t1 | MTR_4g104510 | 23.591 | 479 | 306 | 18 | 1 | 465 | 15 | 447 | 1.06e-14 | 76.3 |
MS.gene40927.t1 | MTR_1g492640 | 26.282 | 312 | 200 | 12 | 38 | 338 | 70 | 362 | 1.16e-14 | 75.9 |
MS.gene40927.t1 | MTR_1g492640 | 26.282 | 312 | 200 | 12 | 38 | 338 | 52 | 344 | 1.17e-14 | 75.9 |
MS.gene40927.t1 | MTR_2g012470 | 22.538 | 457 | 303 | 13 | 27 | 464 | 95 | 519 | 2.61e-12 | 69.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene40927.t1 | AT5G09220 | 69.032 | 465 | 138 | 3 | 11 | 469 | 29 | 493 | 0.0 | 687 |
MS.gene40927.t1 | AT1G77380 | 69.397 | 464 | 137 | 2 | 11 | 469 | 13 | 476 | 0.0 | 669 |
MS.gene40927.t1 | AT5G63850 | 67.763 | 456 | 141 | 3 | 20 | 469 | 11 | 466 | 0.0 | 665 |
MS.gene40927.t1 | AT1G44100 | 64.167 | 480 | 161 | 3 | 1 | 469 | 1 | 480 | 0.0 | 650 |
MS.gene40927.t1 | AT1G58360 | 55.629 | 453 | 195 | 3 | 21 | 467 | 30 | 482 | 0.0 | 536 |
MS.gene40927.t1 | AT1G10010 | 56.541 | 451 | 190 | 3 | 21 | 465 | 22 | 472 | 0.0 | 534 |
MS.gene40927.t1 | AT1G10010 | 56.541 | 451 | 190 | 3 | 21 | 465 | 21 | 471 | 0.0 | 534 |
MS.gene40927.t1 | AT5G49630 | 56.067 | 478 | 197 | 8 | 1 | 465 | 1 | 478 | 0.0 | 530 |
MS.gene40927.t1 | AT5G23810 | 47.732 | 463 | 226 | 7 | 1 | 452 | 1 | 458 | 4.05e-142 | 416 |
MS.gene40927.t1 | AT5G23810 | 48.571 | 350 | 171 | 5 | 1 | 345 | 1 | 346 | 1.98e-107 | 323 |
MS.gene40927.t1 | AT5G23810 | 47.308 | 260 | 130 | 4 | 1 | 257 | 1 | 256 | 3.67e-75 | 237 |
MS.gene40927.t1 | AT5G23810 | 46.698 | 212 | 108 | 3 | 1 | 209 | 1 | 210 | 4.57e-59 | 194 |
MS.gene40927.t1 | AT5G23810 | 46.698 | 212 | 108 | 3 | 1 | 209 | 1 | 210 | 4.57e-59 | 194 |
MS.gene40927.t1 | AT1G24400 | 28.998 | 469 | 286 | 11 | 9 | 466 | 9 | 441 | 1.50e-46 | 167 |
MS.gene40927.t1 | AT1G48640 | 28.178 | 472 | 293 | 9 | 12 | 466 | 11 | 453 | 2.56e-46 | 167 |
MS.gene40927.t1 | AT5G40780 | 27.660 | 470 | 287 | 11 | 14 | 463 | 7 | 443 | 3.04e-46 | 166 |
MS.gene40927.t1 | AT1G67640 | 29.747 | 474 | 292 | 10 | 1 | 466 | 1 | 441 | 1.04e-44 | 162 |
MS.gene40927.t1 | AT5G40780 | 28.235 | 425 | 271 | 9 | 43 | 463 | 1 | 395 | 4.09e-42 | 154 |
MS.gene40927.t1 | AT5G40780 | 28.235 | 425 | 271 | 9 | 43 | 463 | 1 | 395 | 4.09e-42 | 154 |
MS.gene40927.t1 | AT3G01760 | 26.923 | 468 | 300 | 10 | 9 | 461 | 2 | 442 | 3.97e-41 | 153 |
MS.gene40927.t1 | AT1G61270 | 28.507 | 442 | 276 | 9 | 28 | 461 | 34 | 443 | 1.31e-39 | 149 |
MS.gene40927.t1 | AT1G71680 | 28.477 | 453 | 271 | 10 | 28 | 466 | 35 | 448 | 9.07e-38 | 143 |
MS.gene40927.t1 | AT1G71680 | 30.539 | 334 | 193 | 8 | 28 | 347 | 35 | 343 | 1.72e-33 | 130 |
MS.gene40927.t1 | AT1G08230 | 27.938 | 451 | 286 | 12 | 26 | 465 | 26 | 448 | 2.58e-31 | 125 |
MS.gene40927.t1 | AT1G25530 | 26.258 | 457 | 298 | 11 | 13 | 463 | 14 | 437 | 8.37e-31 | 124 |
MS.gene40927.t1 | AT5G41800 | 25.862 | 464 | 284 | 16 | 26 | 468 | 25 | 449 | 3.19e-26 | 111 |
MS.gene40927.t1 | AT2G39890 | 25.061 | 411 | 271 | 11 | 58 | 465 | 63 | 439 | 9.80e-21 | 94.7 |
MS.gene40927.t1 | AT2G39890 | 25.061 | 411 | 271 | 11 | 58 | 465 | 63 | 439 | 9.80e-21 | 94.7 |
MS.gene40927.t1 | AT2G39890 | 25.061 | 411 | 271 | 11 | 58 | 465 | 4 | 380 | 1.11e-20 | 94.0 |
MS.gene40927.t1 | AT1G08230 | 29.582 | 311 | 193 | 7 | 163 | 465 | 37 | 329 | 1.65e-20 | 92.8 |
MS.gene40927.t1 | AT1G08230 | 29.582 | 311 | 193 | 7 | 163 | 465 | 37 | 329 | 1.65e-20 | 92.8 |
MS.gene40927.t1 | AT1G08230 | 29.582 | 311 | 193 | 7 | 163 | 465 | 37 | 329 | 1.65e-20 | 92.8 |
MS.gene40927.t1 | AT1G08230 | 29.582 | 311 | 193 | 7 | 163 | 465 | 56 | 348 | 1.97e-20 | 92.8 |
MS.gene40927.t1 | AT2G36590 | 25.000 | 396 | 256 | 13 | 33 | 422 | 30 | 390 | 8.52e-20 | 92.0 |
MS.gene40927.t1 | AT3G55740 | 24.519 | 416 | 267 | 12 | 58 | 465 | 4 | 380 | 1.58e-19 | 90.5 |
MS.gene40927.t1 | AT3G55740 | 24.519 | 416 | 267 | 12 | 58 | 465 | 4 | 380 | 1.58e-19 | 90.5 |
MS.gene40927.t1 | AT3G55740 | 25.000 | 416 | 265 | 13 | 58 | 465 | 60 | 436 | 1.59e-19 | 91.3 |
MS.gene40927.t1 | AT4G35180 | 24.429 | 438 | 286 | 11 | 27 | 451 | 57 | 462 | 1.13e-14 | 76.6 |
MS.gene40927.t1 | AT1G47670 | 22.976 | 457 | 301 | 13 | 27 | 464 | 93 | 517 | 1.87e-11 | 66.6 |
MS.gene40927.t1 | AT5G02170 | 21.749 | 423 | 290 | 10 | 2 | 422 | 105 | 488 | 9.70e-11 | 64.3 |
Find 92 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATCCATTTATAACTCCATTT+TGG | 0.096747 | 3.2:+80774054 | None:intergenic |
TCTTTCACCTATTCCTTTAT+TGG | 0.119863 | 3.2:-80775133 | MS.gene40927:CDS |
TCCTTTCTTCAATGATGTTT+TGG | 0.143872 | 3.2:-80774154 | MS.gene40927:CDS |
TCCTTCAAGGGTAGCCTTAC+AGG | 0.203563 | 3.2:-80774977 | MS.gene40927:CDS |
TCAAATTCTCATTGAAATTC+AGG | 0.204663 | 3.2:-80774867 | MS.gene40927:intron |
ACCTATTCCTTTATTGGCCT+TGG | 0.221167 | 3.2:-80775127 | MS.gene40927:CDS |
GAATTTGAGAAAAGAAAATT+TGG | 0.225678 | 3.2:+80775203 | None:intergenic |
TACTTGGAGCAGTAGGGTTT+TGG | 0.256465 | 3.2:-80774128 | MS.gene40927:CDS |
ACTGGAAAATAGACTGTTAA+AGG | 0.269131 | 3.2:+80774105 | None:intergenic |
GGAAGCTGTTCACACCATTC+TGG | 0.269142 | 3.2:-80776500 | MS.gene40927:CDS |
TCCCAAAATGGAGTTATAAA+TGG | 0.282029 | 3.2:-80774056 | MS.gene40927:CDS |
GTCATCATCATCATACAAAT+TGG | 0.302533 | 3.2:+80776938 | None:intergenic |
GAATACCGAATTCCAATTCC+TGG | 0.303298 | 3.2:-80774261 | MS.gene40927:CDS |
GCAATATCAATGAGCCAATA+TGG | 0.308652 | 3.2:+80774393 | None:intergenic |
CACACCTATACTTATCTTTG+TGG | 0.330592 | 3.2:+80774506 | None:intergenic |
TAAATCTATTCAGATTAATA+TGG | 0.331283 | 3.2:-80774221 | MS.gene40927:CDS |
GTTCAGTACACAAATCTTTA+CGG | 0.334346 | 3.2:-80776017 | MS.gene40927:CDS |
GCTCAGTTGGGTTGGGTGAT+TGG | 0.347023 | 3.2:-80776634 | MS.gene40927:CDS |
TTAGCTGAATGTTATCGAAT+TGG | 0.352508 | 3.2:-80776559 | MS.gene40927:CDS |
TAGGGTTGAAAACCAGGAAT+TGG | 0.354439 | 3.2:+80774249 | None:intergenic |
CGAATTGGCGATCCTCATTA+CGG | 0.356500 | 3.2:-80776544 | MS.gene40927:CDS |
CTAAATATAACCTGCAACTT+TGG | 0.358818 | 3.2:+80775093 | None:intergenic |
CTAGCAGTTGCCAAAGTTGC+AGG | 0.362617 | 3.2:-80775103 | MS.gene40927:intron |
TGCTAGACCAAGGCCAATAA+AGG | 0.370826 | 3.2:+80775120 | None:intergenic |
TCTGAATAGATTTAGATTGT+AGG | 0.380758 | 3.2:+80774230 | None:intergenic |
AATCTTTACGGAACTGCAAT+AGG | 0.394383 | 3.2:-80776005 | MS.gene40927:CDS |
CTGAATAGATTTAGATTGTA+GGG | 0.395935 | 3.2:+80774231 | None:intergenic |
GTATCAGTTGTGGCTGTTGT+TGG | 0.403765 | 3.2:-80773997 | MS.gene40927:CDS |
TTGGGATTACTTGGAGCAGT+AGG | 0.409541 | 3.2:-80774135 | MS.gene40927:CDS |
AAAGAGAAACTATACTTTCA+TGG | 0.411359 | 3.2:-80776521 | MS.gene40927:CDS |
GAAAACCAGGAATTGGAATT+CGG | 0.418612 | 3.2:+80774256 | None:intergenic |
TCCTGTAAGGCTACCCTTGA+AGG | 0.421245 | 3.2:+80774976 | None:intergenic |
AATCTATACATGATAGCATT+TGG | 0.421990 | 3.2:-80775232 | MS.gene40927:CDS |
GCAATAGGATACACAATTGC+GGG | 0.428317 | 3.2:-80775990 | MS.gene40927:CDS |
GCTGAGACAGGGCAATAAAA+AGG | 0.429469 | 3.2:-80775306 | MS.gene40927:intron |
AGAAGGGTTGCGCGTATACT+TGG | 0.437084 | 3.2:+80774334 | None:intergenic |
GGGCAATAGCTCAGTTGGGT+TGG | 0.438417 | 3.2:-80776642 | MS.gene40927:CDS |
GAAGCTGTTCACACCATTCT+GGG | 0.441958 | 3.2:-80776499 | MS.gene40927:intron |
GACAGAAAATGGTTCCTTCA+AGG | 0.449757 | 3.2:-80774990 | MS.gene40927:intron |
TTTCTCGACGAAAGCAAAGA+AGG | 0.450672 | 3.2:+80774317 | None:intergenic |
TCTGACTGTTTGCATTCCTC+AGG | 0.454495 | 3.2:-80775283 | MS.gene40927:CDS |
TATCAGTTGTGGCTGTTGTT+GGG | 0.456332 | 3.2:-80773996 | MS.gene40927:CDS |
CACATAATAACAGCAGTTGT+AGG | 0.459141 | 3.2:-80776688 | MS.gene40927:CDS |
GATCACTCACATCATGCTAA+TGG | 0.460901 | 3.2:+80775965 | None:intergenic |
TTTCAATAATCAGTTGTGAA+TGG | 0.464770 | 3.2:+80773934 | None:intergenic |
TGGGGAAATTTCCAAGCTCT+TGG | 0.464971 | 3.2:-80774917 | MS.gene40927:CDS |
TGCATGGGTTATGCAGCATT+TGG | 0.465101 | 3.2:-80774456 | MS.gene40927:CDS |
GGTTTCAATGACACCCTTTG+TGG | 0.466023 | 3.2:-80776044 | MS.gene40927:CDS |
ACCAAGGCCAATAAAGGAAT+AGG | 0.466847 | 3.2:+80775126 | None:intergenic |
TAGTTTCTCTTTCCGTAATG+AGG | 0.467007 | 3.2:+80776532 | None:intergenic |
GGCAATAGCTCAGTTGGGTT+GGG | 0.467438 | 3.2:-80776641 | MS.gene40927:CDS |
GCATTTGGAGACACAGCACC+AGG | 0.467683 | 3.2:-80774441 | MS.gene40927:CDS |
ATAACAGCAGTTGTAGGATC+AGG | 0.483816 | 3.2:-80776682 | MS.gene40927:CDS |
TTCCAATGCTTACTCCTGTA+AGG | 0.491026 | 3.2:+80774963 | None:intergenic |
AGCATGGGCAATAGCTCAGT+TGG | 0.492596 | 3.2:-80776647 | MS.gene40927:CDS |
CAAGCCACAAAGATAAGTAT+AGG | 0.492781 | 3.2:-80774510 | MS.gene40927:CDS |
AGGCTATGTTGCCAAGAGCT+TGG | 0.496753 | 3.2:+80774906 | None:intergenic |
ACAGAAAATGGTTCCTTCAA+GGG | 0.502482 | 3.2:-80774989 | MS.gene40927:intron |
CCCAAAACATCATTGAAGAA+AGG | 0.503059 | 3.2:+80774153 | None:intergenic |
TTATATGCTTTGTGGCTGCA+TGG | 0.505265 | 3.2:-80774472 | MS.gene40927:CDS |
GATGACCGTCTCAAAAGAAC+AGG | 0.508021 | 3.2:-80776921 | MS.gene40927:intron |
AGATTGTAGGGTTGAAAACC+AGG | 0.509683 | 3.2:+80774243 | None:intergenic |
GCTATCGTAATTCACCTTGT+GGG | 0.513660 | 3.2:-80774363 | MS.gene40927:CDS |
CAGGAGTGTTGTCGTTAGCA+TGG | 0.516340 | 3.2:-80776663 | MS.gene40927:CDS |
TGGGATTACTTGGAGCAGTA+GGG | 0.521905 | 3.2:-80774134 | MS.gene40927:CDS |
CGCTATCGTAATTCACCTTG+TGG | 0.523493 | 3.2:-80774364 | MS.gene40927:CDS |
GACTGTTTGCATTCCTCAGG+AGG | 0.526744 | 3.2:-80775280 | MS.gene40927:CDS |
GCATGGGCAATAGCTCAGTT+GGG | 0.527744 | 3.2:-80776646 | MS.gene40927:CDS |
TGTTTGATATACATCTCCAC+TGG | 0.530626 | 3.2:+80774087 | None:intergenic |
GTTTCAATGACACCCTTTGT+GGG | 0.537172 | 3.2:-80776043 | MS.gene40927:CDS |
TATATGCTTTGTGGCTGCAT+GGG | 0.540477 | 3.2:-80774471 | MS.gene40927:CDS |
TGTGGCTGTTGTTGGGTCAG+TGG | 0.549777 | 3.2:-80773989 | MS.gene40927:CDS |
TTCTCGACGAAAGCAAAGAA+GGG | 0.555174 | 3.2:+80774318 | None:intergenic |
AGCCTTACAGGAGTAAGCAT+TGG | 0.562434 | 3.2:-80774965 | MS.gene40927:CDS |
GTACTGAACTATCCCACAAA+GGG | 0.571823 | 3.2:+80776031 | None:intergenic |
GCACCAGGGAACTTACTCAC+TGG | 0.573888 | 3.2:-80774426 | MS.gene40927:CDS |
CTGAAGAAAATCATAACTGA+AGG | 0.583795 | 3.2:+80776610 | None:intergenic |
AGGAGTGTTGTCGTTAGCAT+GGG | 0.586525 | 3.2:-80776662 | MS.gene40927:CDS |
ATCTATTCAGATTAATATGG+AGG | 0.594981 | 3.2:-80774218 | MS.gene40927:CDS |
TCTAGAATTTGACATGGAGG+TGG | 0.597976 | 3.2:-80777000 | None:intergenic |
ATGTCTTGTAGTATCAGTTG+TGG | 0.607208 | 3.2:-80774007 | MS.gene40927:CDS |
AAATTGGAGTCTTTGTGTGA+AGG | 0.608942 | 3.2:+80776954 | None:intergenic |
ATTCCAGTGAGTAAGTTCCC+TGG | 0.614262 | 3.2:+80774423 | None:intergenic |
TGCAATAGGATACACAATTG+CGG | 0.626230 | 3.2:-80775991 | MS.gene40927:CDS |
GTATAAAGAGTTACCCAGAA+TGG | 0.630066 | 3.2:+80776486 | None:intergenic |
TTGAGAATATGAATATGCAA+AGG | 0.631765 | 3.2:+80774886 | None:intergenic |
ATACTTGGTATGCTCCCACA+AGG | 0.667351 | 3.2:+80774349 | None:intergenic |
TGTACTGAACTATCCCACAA+AGG | 0.675008 | 3.2:+80776030 | None:intergenic |
CACAAGGTGAATTACGATAG+CGG | 0.685183 | 3.2:+80774365 | None:intergenic |
CTTTGGCAACTGCTAGACCA+AGG | 0.697595 | 3.2:+80775110 | None:intergenic |
CATTTGGAGACACAGCACCA+GGG | 0.729488 | 3.2:-80774440 | MS.gene40927:CDS |
AATCAACATTGCTATCACAG+TGG | 0.767055 | 3.2:+80774176 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAAAAATAAATTTGTAACAA+TGG | + | chr3.2:80775404-80775423 | None:intergenic | 10.0% |
!! | TGAATTTAATTAATGTAAAA+TGG | + | chr3.2:80774078-80774097 | None:intergenic | 10.0% |
!!! | AAAATCAATATCAATTTTTT+TGG | + | chr3.2:80775072-80775091 | None:intergenic | 10.0% |
!!! | AAATCAATATCAATTTTTTT+GGG | + | chr3.2:80775071-80775090 | None:intergenic | 10.0% |
!!! | AAGATAATTTTATTCTTAAT+TGG | + | chr3.2:80775124-80775143 | None:intergenic | 10.0% |
!!! | ATTGTTACAAATTTATTTTT+AGG | - | chr3.2:80775403-80775422 | MS.gene40927:intron | 10.0% |
!!! | ATTTTATTCAATTTATCTTT+TGG | - | chr3.2:80775222-80775241 | MS.gene40927:CDS | 10.0% |
!!! | TAAATAGTAAAATTTTGAAA+TGG | - | chr3.2:80774803-80774822 | MS.gene40927:intron | 10.0% |
!! | TAAATCTATTCAGATTAATA+TGG | - | chr3.2:80776702-80776721 | MS.gene40927:CDS | 15.0% |
!! | ACATATATAGAAATCAGATT+TGG | - | chr3.2:80775195-80775214 | MS.gene40927:CDS | 20.0% |
!! | AGAAAATTGTGATAAAAAGA+TGG | - | chr3.2:80776624-80776643 | MS.gene40927:CDS | 20.0% |
!! | ATATGATAAAAAGTGACAAA+AGG | - | chr3.2:80774174-80774193 | MS.gene40927:CDS | 20.0% |
!! | GAATTTGAGAAAAGAAAATT+TGG | + | chr3.2:80775723-80775742 | None:intergenic | 20.0% |
!! | TCTGAAAAAAGTTTATAAAC+CGG | + | chr3.2:80776261-80776280 | None:intergenic | 20.0% |
!! | TTTAATAATCACTACTAGAA+AGG | - | chr3.2:80774673-80774692 | MS.gene40927:intron | 20.0% |
!! | TTTGACAAAATTTGTAACAA+TGG | + | chr3.2:80775377-80775396 | None:intergenic | 20.0% |
!!! | ACCATATTAAGTTTTTATAC+CGG | - | chr3.2:80776211-80776230 | MS.gene40927:intron | 20.0% |
!!! | ACTATTTTTGATATTCTGTT+TGG | - | chr3.2:80774586-80774605 | MS.gene40927:intron | 20.0% |
!!! | ATTATATGTATGATGATGAT+AGG | - | chr3.2:80774109-80774128 | MS.gene40927:CDS | 20.0% |
!!! | CAAGAATATTTAGTTTGATA+TGG | - | chr3.2:80775562-80775581 | MS.gene40927:intron | 20.0% |
!!! | TGTTTTAATTAAACTGGTTT+TGG | - | chr3.2:80775595-80775614 | MS.gene40927:intron | 20.0% |
! | AAAATCGAACCAAATCAAAT+TGG | - | chr3.2:80774499-80774518 | MS.gene40927:CDS | 25.0% |
! | AAAATTTGTAACAATGGATG+TGG | + | chr3.2:80775371-80775390 | None:intergenic | 25.0% |
! | AAAGAGAAACTATACTTTCA+TGG | - | chr3.2:80774402-80774421 | MS.gene40927:CDS | 25.0% |
! | AACAAAAAAAGATCCCAAAA+TGG | - | chr3.2:80776855-80776874 | MS.gene40927:intron | 25.0% |
! | AATCTATACATGATAGCATT+TGG | - | chr3.2:80775691-80775710 | MS.gene40927:intron | 25.0% |
! | ATCTATTCAGATTAATATGG+AGG | - | chr3.2:80776705-80776724 | MS.gene40927:CDS | 25.0% |
! | ATGCATTCTTCTTATAAAAC+CGG | - | chr3.2:80776239-80776258 | MS.gene40927:intron | 25.0% |
! | CTGAATAGATTTAGATTGTA+GGG | + | chr3.2:80776695-80776714 | None:intergenic | 25.0% |
! | TATGATAAATTTAACTCCAC+AGG | - | chr3.2:80776349-80776368 | MS.gene40927:intron | 25.0% |
! | TATTCTTGTCAACAGAAATA+AGG | + | chr3.2:80775550-80775569 | None:intergenic | 25.0% |
! | TCAAATTCTCATTGAAATTC+AGG | - | chr3.2:80776056-80776075 | MS.gene40927:intron | 25.0% |
! | TCTGAATAGATTTAGATTGT+AGG | + | chr3.2:80776696-80776715 | None:intergenic | 25.0% |
! | TTATGAAGCAATAGTGTTTA+TGG | - | chr3.2:80774531-80774550 | MS.gene40927:CDS | 25.0% |
! | TTGAGAATATGAATATGCAA+AGG | + | chr3.2:80776040-80776059 | None:intergenic | 25.0% |
!! | ATATAGAAATCAGATTTGGT+TGG | - | chr3.2:80775199-80775218 | MS.gene40927:CDS | 25.0% |
!! | ATCCATTTATAACTCCATTT+TGG | + | chr3.2:80776872-80776891 | None:intergenic | 25.0% |
!! | CCATATTAAGTTTTTATACC+GGG | - | chr3.2:80776212-80776231 | MS.gene40927:intron | 25.0% |
!! | CTGGAATTTTTAATCCATAT+TGG | - | chr3.2:80776516-80776535 | MS.gene40927:CDS | 25.0% |
!! | TCCATTTATAACTCCATTTT+GGG | + | chr3.2:80776871-80776890 | None:intergenic | 25.0% |
!!! | ATAAACTTTTTTCAGAACGT+GGG | - | chr3.2:80776265-80776284 | MS.gene40927:intron | 25.0% |
!!! | CGGTATTCTTTGTTTATTTT+AGG | + | chr3.2:80776650-80776669 | None:intergenic | 25.0% |
!!! | TATAAACTTTTTTCAGAACG+TGG | - | chr3.2:80776264-80776283 | MS.gene40927:intron | 25.0% |
!!! | TGAGTGTGTTTTAATTAAAC+TGG | - | chr3.2:80775589-80775608 | MS.gene40927:intron | 25.0% |
!!! | TTCATTGTTTTTACTTCAGA+TGG | + | chr3.2:80776392-80776411 | None:intergenic | 25.0% |
!!! | TTCCAGATTTTGATAAAATG+TGG | - | chr3.2:80775740-80775759 | MS.gene40927:intron | 25.0% |
AATTGTTCTACGACAGAAAA+TGG | - | chr3.2:80775922-80775941 | MS.gene40927:intron | 30.0% | |
ACAGAAATAAGGTCAATTAC+TGG | + | chr3.2:80775539-80775558 | None:intergenic | 30.0% | |
ACTGGAAAATAGACTGTTAA+AGG | + | chr3.2:80776821-80776840 | None:intergenic | 30.0% | |
ATAACATTCCATTTCTCAGA+AGG | - | chr3.2:80775872-80775891 | MS.gene40927:intron | 30.0% | |
ATTGGAAAAAACCTAAGACA+TGG | + | chr3.2:80776116-80776135 | None:intergenic | 30.0% | |
CACCAAATTCAATAGTGTTT+GGG | + | chr3.2:80776150-80776169 | None:intergenic | 30.0% | |
CCCGGTATAAAAACTTAATA+TGG | + | chr3.2:80776215-80776234 | None:intergenic | 30.0% | |
CTAAATATAACCTGCAACTT+TGG | + | chr3.2:80775833-80775852 | None:intergenic | 30.0% | |
CTGAAGAAAATCATAACTGA+AGG | + | chr3.2:80774316-80774335 | None:intergenic | 30.0% | |
GTCATCATCATCATACAAAT+TGG | + | chr3.2:80773988-80774007 | None:intergenic | 30.0% | |
GTTCAGTACACAAATCTTTA+CGG | - | chr3.2:80774906-80774925 | MS.gene40927:CDS | 30.0% | |
TCCCAAAATGGAGTTATAAA+TGG | - | chr3.2:80776867-80776886 | MS.gene40927:intron | 30.0% | |
TCTTTCACCTATTCCTTTAT+TGG | - | chr3.2:80775790-80775809 | MS.gene40927:intron | 30.0% | |
TTAGCTGAATGTTATCGAAT+TGG | - | chr3.2:80774364-80774383 | MS.gene40927:CDS | 30.0% | |
TTCAACAGTCCAATTTGATT+TGG | + | chr3.2:80774511-80774530 | None:intergenic | 30.0% | |
! | AATCAAATGATTTTTGCAGG+AGG | - | chr3.2:80774858-80774877 | MS.gene40927:intron | 30.0% |
! | ACTGCATTTTATATGCTTTG+TGG | - | chr3.2:80776443-80776462 | MS.gene40927:intron | 30.0% |
! | CACCACATTTTATCAAAATC+TGG | + | chr3.2:80775745-80775764 | None:intergenic | 30.0% |
! | CCTTTCTTCAATGATGTTTT+GGG | - | chr3.2:80776770-80776789 | MS.gene40927:intron | 30.0% |
! | GAGAATCAAATGATTTTTGC+AGG | - | chr3.2:80774855-80774874 | MS.gene40927:intron | 30.0% |
! | TACTGGTGTTAGATATGTTA+TGG | + | chr3.2:80775522-80775541 | None:intergenic | 30.0% |
! | TCCTTTCTTCAATGATGTTT+TGG | - | chr3.2:80776769-80776788 | MS.gene40927:intron | 30.0% |
! | TTGCTGTTAATCATAACTGA+GGG | - | chr3.2:80775327-80775346 | MS.gene40927:intron | 30.0% |
! | TTTAACAGTCTATTTTCCAG+TGG | - | chr3.2:80776820-80776839 | MS.gene40927:intron | 30.0% |
!! | CAGATTTTGATAAAATGTGG+TGG | - | chr3.2:80775743-80775762 | MS.gene40927:intron | 30.0% |
!! | GAAATTTCCCCATACTTTTT+GGG | + | chr3.2:80775998-80776017 | None:intergenic | 30.0% |
!! | GTTTTGAACATAGAGAGAAA+AGG | + | chr3.2:80776086-80776105 | None:intergenic | 30.0% |
!! | TTTGCTGTTAATCATAACTG+AGG | - | chr3.2:80775326-80775345 | MS.gene40927:intron | 30.0% |
!!! | AATGATGTTTTGGGATTACT+TGG | - | chr3.2:80776779-80776798 | MS.gene40927:intron | 30.0% |
!!! | ATTGTTTTTACTTCAGATGG+TGG | + | chr3.2:80776389-80776408 | None:intergenic | 30.0% |
!!! | GTTTGCTGTTTCTTTTGAAA+AGG | - | chr3.2:80774645-80774664 | MS.gene40927:intron | 30.0% |
!!! | TGACTTTGTTTTTGACTTCT+TGG | + | chr3.2:80774713-80774732 | None:intergenic | 30.0% |
!!! | TTCAGATGGTGGATTTTTTA+TGG | + | chr3.2:80776378-80776397 | None:intergenic | 30.0% |
AAACTAGTGTACCATGTCTT+AGG | - | chr3.2:80776102-80776121 | MS.gene40927:intron | 35.0% | |
AAATTGGAGTCTTTGTGTGA+AGG | + | chr3.2:80773972-80773991 | None:intergenic | 35.0% | |
AATAGTGTTTGGGCTTAAGT+GGG | + | chr3.2:80776140-80776159 | None:intergenic | 35.0% | |
AATCAACATTGCTATCACAG+TGG | + | chr3.2:80776750-80776769 | None:intergenic | 35.0% | |
AATCTTTACGGAACTGCAAT+AGG | - | chr3.2:80774918-80774937 | MS.gene40927:CDS | 35.0% | |
ACAATGGATGTGGTACATAT+AGG | + | chr3.2:80775361-80775380 | None:intergenic | 35.0% | |
ACAGAAAATGGTTCCTTCAA+GGG | - | chr3.2:80775934-80775953 | MS.gene40927:intron | 35.0% | |
AGCCCAAACACTATTGAATT+TGG | - | chr3.2:80776145-80776164 | MS.gene40927:intron | 35.0% | |
ATGTCTTGTAGTATCAGTTG+TGG | - | chr3.2:80776916-80776935 | MS.gene40927:intron | 35.0% | |
CAAGCCACAAAGATAAGTAT+AGG | - | chr3.2:80776413-80776432 | MS.gene40927:intron | 35.0% | |
CACACCTATACTTATCTTTG+TGG | + | chr3.2:80776420-80776439 | None:intergenic | 35.0% | |
CACATAATAACAGCAGTTGT+AGG | - | chr3.2:80774235-80774254 | MS.gene40927:CDS | 35.0% | |
CCCAAAACATCATTGAAGAA+AGG | + | chr3.2:80776773-80776792 | None:intergenic | 35.0% | |
GAAAACCAGGAATTGGAATT+CGG | + | chr3.2:80776670-80776689 | None:intergenic | 35.0% | |
GCAATATCAATGAGCCAATA+TGG | + | chr3.2:80776533-80776552 | None:intergenic | 35.0% | |
GCACCAAATTCAATAGTGTT+TGG | + | chr3.2:80776151-80776170 | None:intergenic | 35.0% | |
GGTGCGTAGATATAAATTGT+GGG | - | chr3.2:80776166-80776185 | MS.gene40927:intron | 35.0% | |
GTATAAAGAGTTACCCAGAA+TGG | + | chr3.2:80774440-80774459 | None:intergenic | 35.0% | |
TAAAACTGATATCGTGCTTG+AGG | + | chr3.2:80775176-80775195 | None:intergenic | 35.0% | |
TAAGAAGAATGCATAAGACC+CGG | + | chr3.2:80776233-80776252 | None:intergenic | 35.0% | |
TAGTTTCTCTTTCCGTAATG+AGG | + | chr3.2:80774394-80774413 | None:intergenic | 35.0% | |
TGACAAAAGCCCAAAAAGTA+TGG | - | chr3.2:80775986-80776005 | MS.gene40927:CDS | 35.0% | |
TGCAATAGGATACACAATTG+CGG | - | chr3.2:80774932-80774951 | MS.gene40927:CDS | 35.0% | |
TGGTGCGTAGATATAAATTG+TGG | - | chr3.2:80776165-80776184 | MS.gene40927:intron | 35.0% | |
TGTTTGATATACATCTCCAC+TGG | + | chr3.2:80776839-80776858 | None:intergenic | 35.0% | |
! | ACAAAAGCCCAAAAAGTATG+GGG | - | chr3.2:80775988-80776007 | MS.gene40927:CDS | 35.0% |
! | GACAAAAGCCCAAAAAGTAT+GGG | - | chr3.2:80775987-80776006 | MS.gene40927:CDS | 35.0% |
! | GGAAATTTCCCCATACTTTT+TGG | + | chr3.2:80775999-80776018 | None:intergenic | 35.0% |
! | TTTTCTTCAGTCTCATCACT+TGG | - | chr3.2:80774326-80774345 | MS.gene40927:CDS | 35.0% |
!! | TAGTACCTGTTCTTTTGAGA+CGG | + | chr3.2:80774010-80774029 | None:intergenic | 35.0% |
!!! | CAAAAGGTACTTTTTGAGAC+AGG | - | chr3.2:80774190-80774209 | MS.gene40927:CDS | 35.0% |
!!! | TGCTTTTTCCTTCTGAGAAA+TGG | + | chr3.2:80775883-80775902 | None:intergenic | 35.0% |
ACCAAGGCCAATAAAGGAAT+AGG | + | chr3.2:80775800-80775819 | None:intergenic | 40.0% | |
AGATTGTAGGGTTGAAAACC+AGG | + | chr3.2:80776683-80776702 | None:intergenic | 40.0% | |
ATAACAGCAGTTGTAGGATC+AGG | - | chr3.2:80774241-80774260 | MS.gene40927:CDS | 40.0% | |
CAATAGTGTTTGGGCTTAAG+TGG | + | chr3.2:80776141-80776160 | None:intergenic | 40.0% | |
CACAAGGTGAATTACGATAG+CGG | + | chr3.2:80776561-80776580 | None:intergenic | 40.0% | |
GAATACCGAATTCCAATTCC+TGG | - | chr3.2:80776662-80776681 | MS.gene40927:CDS | 40.0% | |
GACAGAAAATGGTTCCTTCA+AGG | - | chr3.2:80775933-80775952 | MS.gene40927:intron | 40.0% | |
GATCACTCACATCATGCTAA+TGG | + | chr3.2:80774961-80774980 | None:intergenic | 40.0% | |
GCAATAGGATACACAATTGC+GGG | - | chr3.2:80774933-80774952 | MS.gene40927:CDS | 40.0% | |
GCTATCGTAATTCACCTTGT+GGG | - | chr3.2:80776560-80776579 | MS.gene40927:CDS | 40.0% | |
GTACTGAACTATCCCACAAA+GGG | + | chr3.2:80774895-80774914 | None:intergenic | 40.0% | |
GTTTCAATGACACCCTTTGT+GGG | - | chr3.2:80774880-80774899 | MS.gene40927:CDS | 40.0% | |
TAGGGTTGAAAACCAGGAAT+TGG | + | chr3.2:80776677-80776696 | None:intergenic | 40.0% | |
TATATGCTTTGTGGCTGCAT+GGG | - | chr3.2:80776452-80776471 | MS.gene40927:intron | 40.0% | |
TATCAGTTGTGGCTGTTGTT+GGG | - | chr3.2:80776927-80776946 | MS.gene40927:CDS | 40.0% | |
TCACACGCTTGTACTTGATT+TGG | - | chr3.2:80774730-80774749 | MS.gene40927:intron | 40.0% | |
TGTACTGAACTATCCCACAA+AGG | + | chr3.2:80774896-80774915 | None:intergenic | 40.0% | |
TTATATGCTTTGTGGCTGCA+TGG | - | chr3.2:80776451-80776470 | MS.gene40927:intron | 40.0% | |
TTCCAATGCTTACTCCTGTA+AGG | + | chr3.2:80775963-80775982 | None:intergenic | 40.0% | |
TTCTCGACGAAAGCAAAGAA+GGG | + | chr3.2:80776608-80776627 | None:intergenic | 40.0% | |
TTTCTCGACGAAAGCAAAGA+AGG | + | chr3.2:80776609-80776628 | None:intergenic | 40.0% | |
! | ACCTATTCCTTTATTGGCCT+TGG | - | chr3.2:80775796-80775815 | MS.gene40927:intron | 40.0% |
!!! | GGATTTTTTATGGTGTCCTG+TGG | + | chr3.2:80776368-80776387 | None:intergenic | 40.0% |
!!! | GGTACTTTTTGAGACAGGAA+CGG | - | chr3.2:80774195-80774214 | MS.gene40927:CDS | 40.0% |
!!! | TTTTTGAGACAGGAACGGTT+TGG | - | chr3.2:80774200-80774219 | MS.gene40927:CDS | 40.0% |
AGCCTTACAGGAGTAAGCAT+TGG | - | chr3.2:80775958-80775977 | MS.gene40927:intron | 45.0% | |
ATACTTGGTATGCTCCCACA+AGG | + | chr3.2:80776577-80776596 | None:intergenic | 45.0% | |
ATTCCAGTGAGTAAGTTCCC+TGG | + | chr3.2:80776503-80776522 | None:intergenic | 45.0% | |
CGAATTGGCGATCCTCATTA+CGG | - | chr3.2:80774379-80774398 | MS.gene40927:CDS | 45.0% | |
CGCTATCGTAATTCACCTTG+TGG | - | chr3.2:80776559-80776578 | MS.gene40927:CDS | 45.0% | |
GAAGCTGTTCACACCATTCT+GGG | - | chr3.2:80774424-80774443 | MS.gene40927:CDS | 45.0% | |
GATGACCGTCTCAAAAGAAC+AGG | - | chr3.2:80774002-80774021 | MS.gene40927:CDS | 45.0% | |
GCTGAGACAGGGCAATAAAA+AGG | - | chr3.2:80775617-80775636 | MS.gene40927:intron | 45.0% | |
GGTTTCAATGACACCCTTTG+TGG | - | chr3.2:80774879-80774898 | MS.gene40927:CDS | 45.0% | |
GTATCAGTTGTGGCTGTTGT+TGG | - | chr3.2:80776926-80776945 | MS.gene40927:CDS | 45.0% | |
GTTTGGGCTTAAGTGGGTAT+TGG | + | chr3.2:80776134-80776153 | None:intergenic | 45.0% | |
TCTGACTGTTTGCATTCCTC+AGG | - | chr3.2:80775640-80775659 | MS.gene40927:intron | 45.0% | |
TGCTAGACCAAGGCCAATAA+AGG | + | chr3.2:80775806-80775825 | None:intergenic | 45.0% | |
TGGGATTACTTGGAGCAGTA+GGG | - | chr3.2:80776789-80776808 | MS.gene40927:intron | 45.0% | |
TGGGGAAATTTCCAAGCTCT+TGG | - | chr3.2:80776006-80776025 | MS.gene40927:CDS | 45.0% | |
TTGGGATTACTTGGAGCAGT+AGG | - | chr3.2:80776788-80776807 | MS.gene40927:intron | 45.0% | |
! | ACATGAGTCTTTTCCTCCTG+AGG | + | chr3.2:80775659-80775678 | None:intergenic | 45.0% |
! | TACTTGGAGCAGTAGGGTTT+TGG | - | chr3.2:80776795-80776814 | MS.gene40927:intron | 45.0% |
! | TGCATGGGTTATGCAGCATT+TGG | - | chr3.2:80776467-80776486 | MS.gene40927:intron | 45.0% |
!! | AGGAGTGTTGTCGTTAGCAT+GGG | - | chr3.2:80774261-80774280 | MS.gene40927:CDS | 45.0% |
!!! | AAACTGGTTTTGGCTGAGAC+AGG | - | chr3.2:80775605-80775624 | MS.gene40927:intron | 45.0% |
!!! | AACTGGTTTTGGCTGAGACA+GGG | - | chr3.2:80775606-80775625 | MS.gene40927:intron | 45.0% |
!!! | TTATTTATTGATTTAATAAA+GGG | + | chr3.2:80775442-80775461 | None:intergenic | 5.0% |
!!! | TTTATTTATTGATTTAATAA+AGG | + | chr3.2:80775443-80775462 | None:intergenic | 5.0% |
AGAAGGGTTGCGCGTATACT+TGG | + | chr3.2:80776592-80776611 | None:intergenic | 50.0% | |
AGCATGGGCAATAGCTCAGT+TGG | - | chr3.2:80774276-80774295 | MS.gene40927:CDS | 50.0% | |
AGGCTATGTTGCCAAGAGCT+TGG | + | chr3.2:80776020-80776039 | None:intergenic | 50.0% | |
CATTTGGAGACACAGCACCA+GGG | - | chr3.2:80776483-80776502 | MS.gene40927:intron | 50.0% | |
CTAGCAGTTGCCAAAGTTGC+AGG | - | chr3.2:80775820-80775839 | MS.gene40927:intron | 50.0% | |
CTTTGGCAACTGCTAGACCA+AGG | + | chr3.2:80775816-80775835 | None:intergenic | 50.0% | |
GACTGTTTGCATTCCTCAGG+AGG | - | chr3.2:80775643-80775662 | MS.gene40927:intron | 50.0% | |
GCATGGGCAATAGCTCAGTT+GGG | - | chr3.2:80774277-80774296 | MS.gene40927:CDS | 50.0% | |
GGAAGCTGTTCACACCATTC+TGG | - | chr3.2:80774423-80774442 | MS.gene40927:CDS | 50.0% | |
GGCAATAGCTCAGTTGGGTT+GGG | - | chr3.2:80774282-80774301 | MS.gene40927:CDS | 50.0% | |
TCCTGTAAGGCTACCCTTGA+AGG | + | chr3.2:80775950-80775969 | None:intergenic | 50.0% | |
! | TCCTTCAAGGGTAGCCTTAC+AGG | - | chr3.2:80775946-80775965 | MS.gene40927:intron | 50.0% |
!! | CAGGAGTGTTGTCGTTAGCA+TGG | - | chr3.2:80774260-80774279 | MS.gene40927:CDS | 50.0% |
GCACCAGGGAACTTACTCAC+TGG | - | chr3.2:80776497-80776516 | MS.gene40927:intron | 55.0% | |
GCATTTGGAGACACAGCACC+AGG | - | chr3.2:80776482-80776501 | MS.gene40927:intron | 55.0% | |
GGGCAATAGCTCAGTTGGGT+TGG | - | chr3.2:80774281-80774300 | MS.gene40927:CDS | 55.0% | |
TGTGGCTGTTGTTGGGTCAG+TGG | - | chr3.2:80776934-80776953 | MS.gene40927:CDS | 55.0% | |
!! | GCTCAGTTGGGTTGGGTGAT+TGG | - | chr3.2:80774289-80774308 | MS.gene40927:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.2 | gene | 80773936 | 80777009 | 80773936 | ID=MS.gene40927 |
chr3.2 | mRNA | 80773936 | 80777009 | 80773936 | ID=MS.gene40927.t1;Parent=MS.gene40927 |
chr3.2 | exon | 80776922 | 80777009 | 80776922 | ID=MS.gene40927.t1.exon1;Parent=MS.gene40927.t1 |
chr3.2 | CDS | 80776922 | 80777009 | 80776922 | ID=cds.MS.gene40927.t1;Parent=MS.gene40927.t1 |
chr3.2 | exon | 80776500 | 80776733 | 80776500 | ID=MS.gene40927.t1.exon2;Parent=MS.gene40927.t1 |
chr3.2 | CDS | 80776500 | 80776733 | 80776500 | ID=cds.MS.gene40927.t1;Parent=MS.gene40927.t1 |
chr3.2 | exon | 80775975 | 80776068 | 80775975 | ID=MS.gene40927.t1.exon3;Parent=MS.gene40927.t1 |
chr3.2 | CDS | 80775975 | 80776068 | 80775975 | ID=cds.MS.gene40927.t1;Parent=MS.gene40927.t1 |
chr3.2 | exon | 80775104 | 80775318 | 80775104 | ID=MS.gene40927.t1.exon4;Parent=MS.gene40927.t1 |
chr3.2 | CDS | 80775104 | 80775318 | 80775104 | ID=cds.MS.gene40927.t1;Parent=MS.gene40927.t1 |
chr3.2 | exon | 80774868 | 80775007 | 80774868 | ID=MS.gene40927.t1.exon5;Parent=MS.gene40927.t1 |
chr3.2 | CDS | 80774868 | 80775007 | 80774868 | ID=cds.MS.gene40927.t1;Parent=MS.gene40927.t1 |
chr3.2 | exon | 80773936 | 80774574 | 80773936 | ID=MS.gene40927.t1.exon6;Parent=MS.gene40927.t1 |
chr3.2 | CDS | 80773936 | 80774574 | 80773936 | ID=cds.MS.gene40927.t1;Parent=MS.gene40927.t1 |
Gene Sequence |
Protein sequence |