Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40940.t1 | XP_003602689.1 | 93.4 | 273 | 18 | 0 | 1 | 273 | 1 | 273 | 8.10E-140 | 506.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40940.t1 | O64885 | 54.3 | 282 | 116 | 5 | 1 | 273 | 1 | 278 | 4.9e-69 | 262.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40940.t1 | G7J2M5 | 93.4 | 273 | 18 | 0 | 1 | 273 | 1 | 273 | 5.8e-140 | 506.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049235 | MS.gene40940 | 0.951302 | 2.72E-109 | -1.69E-46 |
| MS.gene051699 | MS.gene40940 | -0.807411 | 5.12E-50 | -1.69E-46 |
| MS.gene053879 | MS.gene40940 | -0.816094 | 6.60E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene40940 | MS.gene023974 | PPI |
| MS.gene40940 | MS.gene96949 | PPI |
| MS.gene40940 | MS.gene035194 | PPI |
| MS.gene40940 | MS.gene23437 | PPI |
| MS.gene40940 | MS.gene85452 | PPI |
| MS.gene40940 | MS.gene058668 | PPI |
| MS.gene40940 | MS.gene018651 | PPI |
| MS.gene40940 | MS.gene36640 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40940.t1 | MTR_3g096970 | 93.407 | 273 | 18 | 0 | 1 | 273 | 1 | 273 | 0.0 | 528 |
| MS.gene40940.t1 | MTR_3g088850 | 88.406 | 276 | 29 | 1 | 1 | 273 | 1 | 276 | 0.0 | 505 |
| MS.gene40940.t1 | MTR_3g088850 | 86.572 | 283 | 35 | 1 | 1 | 280 | 38 | 320 | 0.0 | 505 |
| MS.gene40940.t1 | MTR_3g088850 | 86.572 | 283 | 35 | 1 | 1 | 280 | 64 | 346 | 0.0 | 505 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40940.t1 | AT2G44510 | 54.839 | 279 | 113 | 5 | 1 | 270 | 1 | 275 | 1.06e-83 | 254 |
| MS.gene40940.t1 | AT5G03830 | 48.760 | 242 | 86 | 7 | 1 | 241 | 1 | 205 | 1.29e-52 | 173 |
| MS.gene40940.t1 | AT5G03830 | 48.760 | 242 | 86 | 7 | 1 | 241 | 1 | 205 | 1.29e-52 | 173 |
| MS.gene40940.t1 | AT5G03830 | 48.760 | 242 | 86 | 7 | 1 | 241 | 1 | 205 | 1.29e-52 | 173 |
Find 88 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTCTCTTGGCCTGCTTTA+AGG | 0.079662 | 3.2:-80927064 | None:intergenic |
| TTGTTACCGCTCTTAATTTA+TGG | 0.174434 | 3.2:+80926384 | MS.gene40940:CDS |
| TGGCTTTGCAGACTTGATTT+TGG | 0.241139 | 3.2:+80926298 | MS.gene40940:CDS |
| TGATAAGTTGATATTACTTT+TGG | 0.246157 | 3.2:+80927094 | MS.gene40940:CDS |
| TTGGGTCGTTGACGCCTTCT+TGG | 0.252549 | 3.2:-80925797 | None:intergenic |
| GAATATAATGGGCCAAGATT+TGG | 0.291911 | 3.2:-80925816 | None:intergenic |
| CCATGGAAATCATTGGGTTT+AGG | 0.305918 | 3.2:-80926224 | None:intergenic |
| GCCAAATGGGGAGAATATAA+TGG | 0.310615 | 3.2:-80925828 | None:intergenic |
| CTCTTAATTTATGGAGGTAT+AGG | 0.323978 | 3.2:+80926393 | MS.gene40940:CDS |
| CGAGCAAGAGCGCGGCCAAA+TGG | 0.341638 | 3.2:-80925842 | None:intergenic |
| CCCATTATATTCTCCCCATT+TGG | 0.342026 | 3.2:+80925827 | MS.gene40940:CDS |
| AATATAATGGGCCAAGATTT+GGG | 0.346246 | 3.2:-80925815 | None:intergenic |
| AGCACACCACGTAGGTCTTC+TGG | 0.360860 | 3.2:+80927124 | MS.gene40940:CDS |
| CTTAACTCCATGGAAATCAT+TGG | 0.376136 | 3.2:-80926231 | None:intergenic |
| TCTTAATTTATGGAGGTATA+GGG | 0.378376 | 3.2:+80926394 | MS.gene40940:CDS |
| TCAGATGACTCTGACCCTTC+AGG | 0.384150 | 3.2:-80926081 | None:intergenic |
| GAATTATATAATGCTTAAAC+TGG | 0.392923 | 3.2:-80927378 | None:intergenic |
| GAGCAAGAGCGCGGCCAAAT+GGG | 0.392951 | 3.2:-80925841 | None:intergenic |
| ATGACGGTTTGGCTTAGAAA+TGG | 0.416643 | 3.2:-80925873 | None:intergenic |
| ATGGATTCGTAATGACGGTT+TGG | 0.422019 | 3.2:-80925884 | None:intergenic |
| CATAAAGATGTGGTAAAAGC+TGG | 0.429728 | 3.2:-80927175 | None:intergenic |
| GGCGTCAACGACCCAAATCT+TGG | 0.432825 | 3.2:+80925804 | MS.gene40940:CDS |
| TTAACTCCATGGAAATCATT+GGG | 0.437074 | 3.2:-80926230 | None:intergenic |
| TTACCTAGATGTTGAAGAAT+GGG | 0.437722 | 3.2:+80926268 | MS.gene40940:CDS |
| AATCCCATTCTTCAACATCT+AGG | 0.445601 | 3.2:-80926271 | None:intergenic |
| TGGCCGCGCTCTTGCTCGTA+TGG | 0.446929 | 3.2:+80925847 | MS.gene40940:CDS |
| CTTACCTAGATGTTGAAGAA+TGG | 0.457923 | 3.2:+80926267 | MS.gene40940:CDS |
| TGACGCCTTCTTGGCTTTCG+AGG | 0.467184 | 3.2:-80925788 | None:intergenic |
| CCAAATGGGGAGAATATAAT+GGG | 0.469210 | 3.2:-80925827 | None:intergenic |
| TATCAGCAATGCCCTTCTCT+TGG | 0.475701 | 3.2:-80927076 | None:intergenic |
| CATCTAGGTAAGTTTGCAGC+AGG | 0.476506 | 3.2:-80926256 | None:intergenic |
| CGTCTTACTAGTAGAGGAAA+GGG | 0.484380 | 3.2:-80925918 | None:intergenic |
| GCTTAAACTGGAAGGAAGTC+CGG | 0.491473 | 3.2:-80927366 | None:intergenic |
| AATTCTTAGCAAAATTTACA+AGG | 0.497613 | 3.2:+80927396 | MS.gene40940:CDS |
| TGGCTTCAACAAGCACACTT+TGG | 0.512805 | 3.2:+80926050 | MS.gene40940:CDS |
| TAACTTGCCTCATGAGGTGC+AGG | 0.517570 | 3.2:-80927773 | None:intergenic |
| ATAAAGATGTGGTAAAAGCT+GGG | 0.518331 | 3.2:-80927174 | None:intergenic |
| GTGGTAAAAGCTGGGGAGGA+AGG | 0.522221 | 3.2:-80927166 | None:intergenic |
| AACAGCCAACAGAGGACCTC+CGG | 0.530393 | 3.2:+80927347 | MS.gene40940:intron |
| GAATTTCTCCTCCTTAAAGC+AGG | 0.534707 | 3.2:+80927053 | MS.gene40940:CDS |
| CCTAAACCCAATGATTTCCA+TGG | 0.540138 | 3.2:+80926224 | MS.gene40940:CDS |
| TTACTAGTAGAGGAAAGGGT+AGG | 0.545836 | 3.2:-80925914 | None:intergenic |
| GCGTCTTACTAGTAGAGGAA+AGG | 0.553247 | 3.2:-80925919 | None:intergenic |
| TCTCTTGGCCTGCTTTAAGG+AGG | 0.553910 | 3.2:-80927061 | None:intergenic |
| GCAGCAACCTGCACCTCATG+AGG | 0.560436 | 3.2:+80927766 | MS.gene40940:CDS |
| CACTGTAGGGACTGTTGTGA+AGG | 0.561683 | 3.2:+80926328 | MS.gene40940:CDS |
| GTAGAGGATGATGAGGACGA+AGG | 0.562570 | 3.2:+80926350 | MS.gene40940:CDS |
| TATATAATGCTTAAACTGGA+AGG | 0.563473 | 3.2:-80927374 | None:intergenic |
| AAGGGTCAGAGTCATCTGAC+GGG | 0.567670 | 3.2:+80926085 | MS.gene40940:CDS |
| AGATGTGGTAAAAGCTGGGG+AGG | 0.569543 | 3.2:-80927170 | None:intergenic |
| GCAGGTTGCTGCGTGCGCAA+AGG | 0.570607 | 3.2:-80927755 | None:intergenic |
| AAATGCCTCGAAAGCCAAGA+AGG | 0.571167 | 3.2:+80925783 | None:intergenic |
| AAAAGGCGTCTTACTAGTAG+AGG | 0.571577 | 3.2:-80925924 | None:intergenic |
| CCTTAAAGCAGGCCAAGAGA+AGG | 0.574068 | 3.2:+80927064 | MS.gene40940:CDS |
| GCAGCAGGGTCTTAACTCCA+TGG | 0.576405 | 3.2:-80926241 | None:intergenic |
| AGCAAGAGCGCGGCCAAATG+GGG | 0.577789 | 3.2:-80925840 | None:intergenic |
| CTTAAAGCAGGCCAAGAGAA+GGG | 0.581387 | 3.2:+80927065 | MS.gene40940:CDS |
| TTACCGCTCTTAATTTATGG+AGG | 0.583198 | 3.2:+80926387 | MS.gene40940:CDS |
| TACTAGTAGAGGAAAGGGTA+GGG | 0.587803 | 3.2:-80925913 | None:intergenic |
| GAAGTCCGGAGGTCCTCTGT+TGG | 0.590024 | 3.2:-80927352 | None:intergenic |
| GAAGGGTCAGAGTCATCTGA+CGG | 0.599996 | 3.2:+80926084 | MS.gene40940:CDS |
| GTCATGGGCCACAGAAGATG+AGG | 0.600540 | 3.2:+80927217 | MS.gene40940:CDS |
| AAAGAGTAACTTGCCTCATG+AGG | 0.606852 | 3.2:-80927779 | None:intergenic |
| ACTGAGCGATGATAGTGAAG+AGG | 0.609208 | 3.2:+80927591 | MS.gene40940:CDS |
| AAAAGAGAATCATAAAGATG+TGG | 0.615325 | 3.2:-80927185 | None:intergenic |
| ACATCTCACCTCATCTTCTG+TGG | 0.620207 | 3.2:-80927225 | None:intergenic |
| TCGCAATGGATTCGTAATGA+CGG | 0.622074 | 3.2:-80925889 | None:intergenic |
| ATAATTTCCAGTTAAGCTCG+TGG | 0.625854 | 3.2:+80927720 | MS.gene40940:intron |
| ACTTTGGAAGAAAGACCTGA+AGG | 0.627107 | 3.2:+80926066 | MS.gene40940:CDS |
| AAGGTGTATTATGAAACTCA+AGG | 0.638398 | 3.2:+80927031 | MS.gene40940:CDS |
| TCTTCTGGTATCACAGCGTG+TGG | 0.641776 | 3.2:+80927139 | MS.gene40940:CDS |
| CGTGCGCAAAGGAAAACAGA+AGG | 0.644088 | 3.2:-80927744 | None:intergenic |
| GGAAAGGGTAGGGTTCGCAA+TGG | 0.644789 | 3.2:-80925903 | None:intergenic |
| ATGCCATACGAGCAAGAGCG+CGG | 0.646129 | 3.2:-80925850 | None:intergenic |
| TAAAGATGTGGTAAAAGCTG+GGG | 0.646135 | 3.2:-80927173 | None:intergenic |
| AGGGACTGTTGTGAAGGTAG+AGG | 0.647189 | 3.2:+80926334 | MS.gene40940:CDS |
| CTTTGGAAGAAAGACCTGAA+GGG | 0.652042 | 3.2:+80926067 | MS.gene40940:CDS |
| ATCTAGGTAAGTTTGCAGCA+GGG | 0.655089 | 3.2:-80926255 | None:intergenic |
| GTTGAAGAATGGGATTTGAG+TGG | 0.660162 | 3.2:+80926278 | MS.gene40940:CDS |
| AATAGTATATGTTAAGCCCG+AGG | 0.680431 | 3.2:+80927615 | MS.gene40940:CDS |
| GCACACTTAACAGCCAACAG+AGG | 0.683392 | 3.2:+80927339 | MS.gene40940:intron |
| ATACCTCCATAAATTAAGAG+CGG | 0.696195 | 3.2:-80926390 | None:intergenic |
| TGTGAAGGTAGAGGATGATG+AGG | 0.709733 | 3.2:+80926343 | MS.gene40940:CDS |
| AGGGTCAGAGTCATCTGACG+GGG | 0.709794 | 3.2:+80926086 | MS.gene40940:CDS |
| CTTCACAACAGTCCCTACAG+TGG | 0.715752 | 3.2:-80926327 | None:intergenic |
| TAAACTGGAAGGAAGTCCGG+AGG | 0.716607 | 3.2:-80927363 | None:intergenic |
| GGGGAACAAGCACACCACGT+AGG | 0.744491 | 3.2:+80927116 | MS.gene40940:CDS |
| GTGATACCAGAAGACCTACG+TGG | 0.802514 | 3.2:-80927130 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAATTATAAAAGAGAAAA+AGG | - | chr3.2:80925944-80925963 | None:intergenic | 10.0% |
| !!! | TTATTTTTTATTTGTAAGTT+TGG | + | chr3.2:80926933-80926952 | MS.gene40940:intron | 10.0% |
| !! | TAAGTTATCTACAATTTATA+AGG | + | chr3.2:80926910-80926929 | MS.gene40940:intron | 15.0% |
| !! | TCTCAAATAAAATATGTATT+TGG | - | chr3.2:80926961-80926980 | None:intergenic | 15.0% |
| !! | TTCATATTCAAGAAAAAAAA+AGG | + | chr3.2:80926648-80926667 | MS.gene40940:intron | 15.0% |
| !!! | ATTGTTATTTTTAGCTTTTA+TGG | + | chr3.2:80927465-80927484 | MS.gene40940:intron | 15.0% |
| !!! | ATTTTTTTCTTTAATGTCTT+TGG | + | chr3.2:80926727-80926746 | MS.gene40940:intron | 15.0% |
| !! | AAGGAATTTGTATATTTGTA+TGG | + | chr3.2:80926667-80926686 | MS.gene40940:intron | 20.0% |
| !! | AAGTAAAATTGATTGATACA+AGG | + | chr3.2:80926153-80926172 | MS.gene40940:intron | 20.0% |
| !! | AATTCTTAGCAAAATTTACA+AGG | + | chr3.2:80927396-80927415 | MS.gene40940:CDS | 20.0% |
| !! | AGGAATTTGTATATTTGTAT+GGG | + | chr3.2:80926668-80926687 | MS.gene40940:intron | 20.0% |
| !! | ATAAGAGAACAACAATAAAT+AGG | - | chr3.2:80927447-80927466 | None:intergenic | 20.0% |
| !! | ATGTTACAAAACAACAAAAA+TGG | - | chr3.2:80927512-80927531 | None:intergenic | 20.0% |
| !! | GAATTATATAATGCTTAAAC+TGG | - | chr3.2:80927381-80927400 | None:intergenic | 20.0% |
| !! | GACAAAATAATTCAAAATGA+TGG | - | chr3.2:80927676-80927695 | None:intergenic | 20.0% |
| !! | TATTACATTAGAAAAGAAAG+AGG | - | chr3.2:80926466-80926485 | None:intergenic | 20.0% |
| !! | TGTAAGACATAAAACATAAA+AGG | - | chr3.2:80925994-80926013 | None:intergenic | 20.0% |
| !!! | ATAAGTTGATATTACTTTTG+GGG | + | chr3.2:80927096-80927115 | MS.gene40940:CDS | 20.0% |
| !!! | GATAAGTTGATATTACTTTT+GGG | + | chr3.2:80927095-80927114 | MS.gene40940:CDS | 20.0% |
| !!! | TACACATATGATTACTATTT+TGG | - | chr3.2:80926626-80926645 | None:intergenic | 20.0% |
| !!! | TGATAAGTTGATATTACTTT+TGG | + | chr3.2:80927094-80927113 | MS.gene40940:CDS | 20.0% |
| ! | AAAAGAGAATCATAAAGATG+TGG | - | chr3.2:80927188-80927207 | None:intergenic | 25.0% |
| ! | GAATAAGAATGAATTGATCA+AGG | - | chr3.2:80926699-80926718 | None:intergenic | 25.0% |
| ! | TATATAATGCTTAAACTGGA+AGG | - | chr3.2:80927377-80927396 | None:intergenic | 25.0% |
| !! | AAAGCTTCTAAAAAAGTTGA+CGG | - | chr3.2:80926879-80926898 | None:intergenic | 25.0% |
| !! | AGCTTAACTGGAAATTATTT+TGG | - | chr3.2:80927718-80927737 | None:intergenic | 25.0% |
| !! | CAAAATTTTCAAATTGTTGC+TGG | - | chr3.2:80926768-80926787 | None:intergenic | 25.0% |
| !! | GTAACATTTTACTTCATTTC+TGG | + | chr3.2:80927525-80927544 | MS.gene40940:intron | 25.0% |
| !! | TCTTAATTTATGGAGGTATA+GGG | + | chr3.2:80926394-80926413 | MS.gene40940:CDS | 25.0% |
| !!! | ACATATGATTACTATTTTGG+TGG | - | chr3.2:80926623-80926642 | None:intergenic | 25.0% |
| !!! | ATATGATTACTATTTTGGTG+GGG | - | chr3.2:80926621-80926640 | None:intergenic | 25.0% |
| !!! | CATATGATTACTATTTTGGT+GGG | - | chr3.2:80926622-80926641 | None:intergenic | 25.0% |
| !!! | TAAGTTGATATTACTTTTGG+GGG | + | chr3.2:80927097-80927116 | MS.gene40940:CDS | 25.0% |
| !!! | TCTTTTTAATGAAGTGTCAT+GGG | + | chr3.2:80927202-80927221 | MS.gene40940:CDS | 25.0% |
| !!! | TTGAAAATTTTGTTTGTGAC+TGG | + | chr3.2:80926776-80926795 | MS.gene40940:intron | 25.0% |
| AAGGTGTATTATGAAACTCA+AGG | + | chr3.2:80927031-80927050 | MS.gene40940:CDS | 30.0% | |
| AGAAAGTAAGTGTGATCTTA+AGG | - | chr3.2:80926515-80926534 | None:intergenic | 30.0% | |
| ATAAAGATGTGGTAAAAGCT+GGG | - | chr3.2:80927177-80927196 | None:intergenic | 30.0% | |
| ATACCTCCATAAATTAAGAG+CGG | - | chr3.2:80926393-80926412 | None:intergenic | 30.0% | |
| GAGAACAACAATAAATAGGA+AGG | - | chr3.2:80927443-80927462 | None:intergenic | 30.0% | |
| GGTAGATGTTAATTCAACTT+AGG | - | chr3.2:80926857-80926876 | None:intergenic | 30.0% | |
| TCACACTTACTTTCTTCTTT+AGG | + | chr3.2:80926520-80926539 | MS.gene40940:intron | 30.0% | |
| TTAACTCCATGGAAATCATT+GGG | - | chr3.2:80926233-80926252 | None:intergenic | 30.0% | |
| TTACCTAGATGTTGAAGAAT+GGG | + | chr3.2:80926268-80926287 | MS.gene40940:CDS | 30.0% | |
| TTGTGAAAAAAGTTCATCCT+CGG | - | chr3.2:80927635-80927654 | None:intergenic | 30.0% | |
| TTGTTACCGCTCTTAATTTA+TGG | + | chr3.2:80926384-80926403 | MS.gene40940:CDS | 30.0% | |
| ! | AAGCTTCTAAAAAAGTTGAC+GGG | - | chr3.2:80926878-80926897 | None:intergenic | 30.0% |
| ! | ATTGGGTTTAGGATCAAAAA+AGG | - | chr3.2:80926216-80926235 | None:intergenic | 30.0% |
| ! | CTCTTAATTTATGGAGGTAT+AGG | + | chr3.2:80926393-80926412 | MS.gene40940:CDS | 30.0% |
| ! | TAAAATTTTGCTAGGAGCAA+AGG | + | chr3.2:80927012-80927031 | MS.gene40940:intron | 30.0% |
| ! | TGCTCCTAGCAAAATTTTAA+AGG | - | chr3.2:80927011-80927030 | None:intergenic | 30.0% |
| !! | AATATAATGGGCCAAGATTT+GGG | - | chr3.2:80925818-80925837 | None:intergenic | 30.0% |
| !! | AGATGTTGATAGTATCAGAT+GGG | + | chr3.2:80927242-80927261 | MS.gene40940:intron | 30.0% |
| !! | ATAAAAGGCACTTAAAAGCA+TGG | - | chr3.2:80925979-80925998 | None:intergenic | 30.0% |
| !! | CTCAAATTAGATTAGCTTCA+AGG | - | chr3.2:80926988-80927007 | None:intergenic | 30.0% |
| !! | CTCTTTTTAATGAAGTGTCA+TGG | + | chr3.2:80927201-80927220 | MS.gene40940:CDS | 30.0% |
| !!! | TGAGCCTTTAAAATTTTGCT+AGG | + | chr3.2:80927004-80927023 | MS.gene40940:intron | 30.0% |
| AATAGTATATGTTAAGCCCG+AGG | + | chr3.2:80927615-80927634 | MS.gene40940:CDS | 35.0% | |
| AATCCCATTCTTCAACATCT+AGG | - | chr3.2:80926274-80926293 | None:intergenic | 35.0% | |
| ATAATTTCCAGTTAAGCTCG+TGG | + | chr3.2:80927720-80927739 | MS.gene40940:intron | 35.0% | |
| CAAAAAAGGCAAAATCAGCT+TGG | - | chr3.2:80926202-80926221 | None:intergenic | 35.0% | |
| CATAAAGATGTGGTAAAAGC+TGG | - | chr3.2:80927178-80927197 | None:intergenic | 35.0% | |
| CCAAATGGGGAGAATATAAT+GGG | - | chr3.2:80925830-80925849 | None:intergenic | 35.0% | |
| CTTAACTCCATGGAAATCAT+TGG | - | chr3.2:80926234-80926253 | None:intergenic | 35.0% | |
| CTTACCTAGATGTTGAAGAA+TGG | + | chr3.2:80926267-80926286 | MS.gene40940:CDS | 35.0% | |
| GATGTTAATTCAACTTAGGC+AGG | - | chr3.2:80926853-80926872 | None:intergenic | 35.0% | |
| TAAAGATGTGGTAAAAGCTG+GGG | - | chr3.2:80927176-80927195 | None:intergenic | 35.0% | |
| TCACTAGTAAACTTGCACAA+GGG | - | chr3.2:80926577-80926596 | None:intergenic | 35.0% | |
| TGTGAAAAAAGTTCATCCTC+GGG | - | chr3.2:80927634-80927653 | None:intergenic | 35.0% | |
| TTACCGCTCTTAATTTATGG+AGG | + | chr3.2:80926387-80926406 | MS.gene40940:CDS | 35.0% | |
| ! | ATGTTTTTCTGTTTGACTGC+TGG | + | chr3.2:80927278-80927297 | MS.gene40940:intron | 35.0% |
| ! | GTCTTTGGTTCATTGAATAG+TGG | + | chr3.2:80926742-80926761 | MS.gene40940:intron | 35.0% |
| !! | GAATATAATGGGCCAAGATT+TGG | - | chr3.2:80925819-80925838 | None:intergenic | 35.0% |
| !! | GAGATGTTGATAGTATCAGA+TGG | + | chr3.2:80927241-80927260 | MS.gene40940:intron | 35.0% |
| !!! | GAGGATGAACTTTTTTCACA+AGG | + | chr3.2:80927634-80927653 | MS.gene40940:CDS | 35.0% |
| AAGAAAGAGGCAAACAGATG+AGG | - | chr3.2:80926453-80926472 | None:intergenic | 40.0% | |
| ACTAGTAAACTTGCACAAGG+GGG | - | chr3.2:80926575-80926594 | None:intergenic | 40.0% | |
| ATCTAGGTAAGTTTGCAGCA+GGG | - | chr3.2:80926258-80926277 | None:intergenic | 40.0% | |
| ATGGATTCGTAATGACGGTT+TGG | - | chr3.2:80925887-80925906 | None:intergenic | 40.0% | |
| CACTAGTAAACTTGCACAAG+GGG | - | chr3.2:80926576-80926595 | None:intergenic | 40.0% | |
| CCATGGAAATCATTGGGTTT+AGG | - | chr3.2:80926227-80926246 | None:intergenic | 40.0% | |
| CCCATTATATTCTCCCCATT+TGG | + | chr3.2:80925827-80925846 | MS.gene40940:CDS | 40.0% | |
| CCTAAACCCAATGATTTCCA+TGG | + | chr3.2:80926224-80926243 | MS.gene40940:CDS | 40.0% | |
| CGTCTTACTAGTAGAGGAAA+GGG | - | chr3.2:80925921-80925940 | None:intergenic | 40.0% | |
| CTCACTAGTAAACTTGCACA+AGG | - | chr3.2:80926578-80926597 | None:intergenic | 40.0% | |
| GAATTTCTCCTCCTTAAAGC+AGG | + | chr3.2:80927053-80927072 | MS.gene40940:CDS | 40.0% | |
| GCCAAATGGGGAGAATATAA+TGG | - | chr3.2:80925831-80925850 | None:intergenic | 40.0% | |
| GTTGAAGAATGGGATTTGAG+TGG | + | chr3.2:80926278-80926297 | MS.gene40940:CDS | 40.0% | |
| TACTAGTAGAGGAAAGGGTA+GGG | - | chr3.2:80925916-80925935 | None:intergenic | 40.0% | |
| TGATAGTATCAGATGGGTGA+GGG | + | chr3.2:80927248-80927267 | MS.gene40940:intron | 40.0% | |
| TTACTAGTAGAGGAAAGGGT+AGG | - | chr3.2:80925917-80925936 | None:intergenic | 40.0% | |
| ! | ACTTTGGAAGAAAGACCTGA+AGG | + | chr3.2:80926066-80926085 | MS.gene40940:CDS | 40.0% |
| ! | ATGACGGTTTGGCTTAGAAA+TGG | - | chr3.2:80925876-80925895 | None:intergenic | 40.0% |
| ! | CTTTGGAAGAAAGACCTGAA+GGG | + | chr3.2:80926067-80926086 | MS.gene40940:CDS | 40.0% |
| ! | TCGCAATGGATTCGTAATGA+CGG | - | chr3.2:80925892-80925911 | None:intergenic | 40.0% |
| ! | TTGATAGTATCAGATGGGTG+AGG | + | chr3.2:80927247-80927266 | MS.gene40940:intron | 40.0% |
| !! | AAAAGGCGTCTTACTAGTAG+AGG | - | chr3.2:80925927-80925946 | None:intergenic | 40.0% |
| !! | ACAAGGTCTCTGTTGTTTCA+GGG | + | chr3.2:80926170-80926189 | MS.gene40940:intron | 40.0% |
| !! | TACAAGGTCTCTGTTGTTTC+AGG | + | chr3.2:80926169-80926188 | MS.gene40940:intron | 40.0% |
| !! | TGGCTTTGCAGACTTGATTT+TGG | + | chr3.2:80926298-80926317 | MS.gene40940:CDS | 40.0% |
| !!! | ATTTTGGAACAGACCACTGT+AGG | + | chr3.2:80926314-80926333 | MS.gene40940:CDS | 40.0% |
| !!! | TTTTGGAACAGACCACTGTA+GGG | + | chr3.2:80926315-80926334 | MS.gene40940:CDS | 40.0% |
| AAACTTGCACAAGGGGGAAA+TGG | - | chr3.2:80926569-80926588 | None:intergenic | 45.0% | |
| ACATCTCACCTCATCTTCTG+TGG | - | chr3.2:80927228-80927247 | None:intergenic | 45.0% | |
| CATCTAGGTAAGTTTGCAGC+AGG | - | chr3.2:80926259-80926278 | None:intergenic | 45.0% | |
| CATTACCTAGGAAGTGGATC+AGG | - | chr3.2:80926032-80926051 | None:intergenic | 45.0% | |
| CTATTCCTGATCCACTTCCT+AGG | + | chr3.2:80926024-80926043 | MS.gene40940:intron | 45.0% | |
| CTGATCCACTTCCTAGGTAA+TGG | + | chr3.2:80926030-80926049 | MS.gene40940:intron | 45.0% | |
| CTTAAAGCAGGCCAAGAGAA+GGG | + | chr3.2:80927065-80927084 | MS.gene40940:CDS | 45.0% | |
| GCGTCTTACTAGTAGAGGAA+AGG | - | chr3.2:80925922-80925941 | None:intergenic | 45.0% | |
| GCTTAAACTGGAAGGAAGTC+CGG | - | chr3.2:80927369-80927388 | None:intergenic | 45.0% | |
| TATCAGCAATGCCCTTCTCT+TGG | - | chr3.2:80927079-80927098 | None:intergenic | 45.0% | |
| TGAAGCCATTACCTAGGAAG+TGG | - | chr3.2:80926038-80926057 | None:intergenic | 45.0% | |
| TGGCTTCAACAAGCACACTT+TGG | + | chr3.2:80926050-80926069 | MS.gene40940:CDS | 45.0% | |
| TGTGAAGGTAGAGGATGATG+AGG | + | chr3.2:80926343-80926362 | MS.gene40940:CDS | 45.0% | |
| ! | ACTGAGCGATGATAGTGAAG+AGG | + | chr3.2:80927591-80927610 | MS.gene40940:CDS | 45.0% |
| ! | GCTTGTTGAAGCCATTACCT+AGG | - | chr3.2:80926044-80926063 | None:intergenic | 45.0% |
| AAGGGTCAGAGTCATCTGAC+GGG | + | chr3.2:80926085-80926104 | MS.gene40940:CDS | 50.0% | |
| AGAAGGACCACGAGCTTAAC+TGG | - | chr3.2:80927730-80927749 | None:intergenic | 50.0% | |
| AGATGTGGTAAAAGCTGGGG+AGG | - | chr3.2:80927173-80927192 | None:intergenic | 50.0% | |
| AGGGACTGTTGTGAAGGTAG+AGG | + | chr3.2:80926334-80926353 | MS.gene40940:CDS | 50.0% | |
| CACTGTAGGGACTGTTGTGA+AGG | + | chr3.2:80926328-80926347 | MS.gene40940:CDS | 50.0% | |
| CCTTAAAGCAGGCCAAGAGA+AGG | + | chr3.2:80927064-80927083 | MS.gene40940:CDS | 50.0% | |
| CCTTCTCTTGGCCTGCTTTA+AGG | - | chr3.2:80927067-80927086 | None:intergenic | 50.0% | |
| CGTGCGCAAAGGAAAACAGA+AGG | - | chr3.2:80927747-80927766 | None:intergenic | 50.0% | |
| CTTCACAACAGTCCCTACAG+TGG | - | chr3.2:80926330-80926349 | None:intergenic | 50.0% | |
| GAAGGGTCAGAGTCATCTGA+CGG | + | chr3.2:80926084-80926103 | MS.gene40940:CDS | 50.0% | |
| GCACACTTAACAGCCAACAG+AGG | + | chr3.2:80927339-80927358 | MS.gene40940:intron | 50.0% | |
| GTAGAGGATGATGAGGACGA+AGG | + | chr3.2:80926350-80926369 | MS.gene40940:CDS | 50.0% | |
| GTGATACCAGAAGACCTACG+TGG | - | chr3.2:80927133-80927152 | None:intergenic | 50.0% | |
| TAAACTGGAAGGAAGTCCGG+AGG | - | chr3.2:80927366-80927385 | None:intergenic | 50.0% | |
| TCAGATGACTCTGACCCTTC+AGG | - | chr3.2:80926084-80926103 | None:intergenic | 50.0% | |
| TCTTCTGGTATCACAGCGTG+TGG | + | chr3.2:80927139-80927158 | MS.gene40940:CDS | 50.0% | |
| !! | TCTCTTGGCCTGCTTTAAGG+AGG | - | chr3.2:80927064-80927083 | None:intergenic | 50.0% |
| AACAGCCAACAGAGGACCTC+CGG | + | chr3.2:80927347-80927366 | MS.gene40940:intron | 55.0% | |
| AGCACACCACGTAGGTCTTC+TGG | + | chr3.2:80927124-80927143 | MS.gene40940:CDS | 55.0% | |
| AGGGTCAGAGTCATCTGACG+GGG | + | chr3.2:80926086-80926105 | MS.gene40940:CDS | 55.0% | |
| ATGCCATACGAGCAAGAGCG+CGG | - | chr3.2:80925853-80925872 | None:intergenic | 55.0% | |
| GCAGCAGGGTCTTAACTCCA+TGG | - | chr3.2:80926244-80926263 | None:intergenic | 55.0% | |
| GGAAAGGGTAGGGTTCGCAA+TGG | - | chr3.2:80925906-80925925 | None:intergenic | 55.0% | |
| GGCGTCAACGACCCAAATCT+TGG | + | chr3.2:80925804-80925823 | MS.gene40940:CDS | 55.0% | |
| GTCATGGGCCACAGAAGATG+AGG | + | chr3.2:80927217-80927236 | MS.gene40940:CDS | 55.0% | |
| GTGGTAAAAGCTGGGGAGGA+AGG | - | chr3.2:80927169-80927188 | None:intergenic | 55.0% | |
| TTGGGTCGTTGACGCCTTCT+TGG | - | chr3.2:80925800-80925819 | None:intergenic | 55.0% | |
| ! | TGACGCCTTCTTGGCTTTCG+AGG | - | chr3.2:80925791-80925810 | None:intergenic | 55.0% |
| GAAGTCCGGAGGTCCTCTGT+TGG | - | chr3.2:80927355-80927374 | None:intergenic | 60.0% | |
| GGGGAACAAGCACACCACGT+AGG | + | chr3.2:80927116-80927135 | MS.gene40940:CDS | 60.0% | |
| ! | AGCAAGAGCGCGGCCAAATG+GGG | - | chr3.2:80925843-80925862 | None:intergenic | 60.0% |
| ! | GAGCAAGAGCGCGGCCAAAT+GGG | - | chr3.2:80925844-80925863 | None:intergenic | 60.0% |
| GCAGGTTGCTGCGTGCGCAA+AGG | - | chr3.2:80927758-80927777 | None:intergenic | 65.0% | |
| TGGCCGCGCTCTTGCTCGTA+TGG | + | chr3.2:80925847-80925866 | MS.gene40940:CDS | 65.0% | |
| ! | CGAGCAAGAGCGCGGCCAAA+TGG | - | chr3.2:80925845-80925864 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 80925785 | 80927786 | 80925785 | ID=MS.gene40940 |
| chr3.2 | mRNA | 80925785 | 80927786 | 80925785 | ID=MS.gene40940.t1;Parent=MS.gene40940 |
| chr3.2 | exon | 80925785 | 80925932 | 80925785 | ID=MS.gene40940.t1.exon1;Parent=MS.gene40940.t1 |
| chr3.2 | CDS | 80925785 | 80925932 | 80925785 | ID=cds.MS.gene40940.t1;Parent=MS.gene40940.t1 |
| chr3.2 | exon | 80926046 | 80926116 | 80926046 | ID=MS.gene40940.t1.exon2;Parent=MS.gene40940.t1 |
| chr3.2 | CDS | 80926046 | 80926116 | 80926046 | ID=cds.MS.gene40940.t1;Parent=MS.gene40940.t1 |
| chr3.2 | exon | 80926191 | 80926415 | 80926191 | ID=MS.gene40940.t1.exon3;Parent=MS.gene40940.t1 |
| chr3.2 | CDS | 80926191 | 80926415 | 80926191 | ID=cds.MS.gene40940.t1;Parent=MS.gene40940.t1 |
| chr3.2 | exon | 80927026 | 80927238 | 80927026 | ID=MS.gene40940.t1.exon4;Parent=MS.gene40940.t1 |
| chr3.2 | CDS | 80927026 | 80927238 | 80927026 | ID=cds.MS.gene40940.t1;Parent=MS.gene40940.t1 |
| chr3.2 | exon | 80927352 | 80927417 | 80927352 | ID=MS.gene40940.t1.exon5;Parent=MS.gene40940.t1 |
| chr3.2 | CDS | 80927352 | 80927417 | 80927352 | ID=cds.MS.gene40940.t1;Parent=MS.gene40940.t1 |
| chr3.2 | exon | 80927562 | 80927655 | 80927562 | ID=MS.gene40940.t1.exon6;Parent=MS.gene40940.t1 |
| chr3.2 | CDS | 80927562 | 80927655 | 80927562 | ID=cds.MS.gene40940.t1;Parent=MS.gene40940.t1 |
| chr3.2 | exon | 80927731 | 80927786 | 80927731 | ID=MS.gene40940.t1.exon7;Parent=MS.gene40940.t1 |
| chr3.2 | CDS | 80927731 | 80927786 | 80927731 | ID=cds.MS.gene40940.t1;Parent=MS.gene40940.t1 |
| Gene Sequence |
| Protein sequence |
