AlfalfaGEDB | MS.gene40990

M. sativa cultivar XinJiangDaYe / MS.gene40990

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF01535.23 PF12854.10 PF12921.10 PF13041.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40990.t1	PNY14797.1	89.4	959	102	0	1	959	94	1052	4.90E-258	901

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40990.t1	Q9FNG8	56.0	775	327	5	9	782	93	854	3.7e-73	278.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40990.t1	A0A2K3PHN2	89.4	959	102	0	1	959	94	1052	3.5e-258	901.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene052584	MS.gene40990	0.808642	2.80E-50	-1.69E-46
MS.gene053226	MS.gene40990	0.804595	2.00E-49	-1.69E-46
MS.gene054967	MS.gene40990	0.823131	1.63E-53	-1.69E-46
MS.gene05954	MS.gene40990	0.8064	8.38E-50	-1.69E-46
MS.gene059625	MS.gene40990	0.805071	1.59E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene007849	MS.gene40990	PPI
MS.gene018021	MS.gene40990	PPI
MS.gene026903	MS.gene40990	PPI
MS.gene030826	MS.gene40990	PPI
MS.gene031357	MS.gene40990	PPI
MS.gene032328	MS.gene40990	PPI
MS.gene034729	MS.gene40990	PPI
MS.gene046087	MS.gene40990	PPI
MS.gene05461	MS.gene40990	PPI
MS.gene055966	MS.gene40990	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40990.t1	MTR_1g055295	94.265	959	54	1	1	959	89	1046	0.0	1869
MS.gene40990.t1	MTR_3g105900	23.655	799	544	18	107	891	369	1115	7.84e-56	211
MS.gene40990.t1	MTR_3g105900	25.000	384	285	3	96	478	219	600	7.93e-36	147
MS.gene40990.t1	MTR_3g105900	28.107	338	240	2	601	937	230	565	6.65e-34	141
MS.gene40990.t1	MTR_3g105900	20.043	933	574	16	93	941	111	955	1.33e-33	140
MS.gene40990.t1	MTR_3g105900	25.424	295	217	2	654	947	809	1101	3.40e-25	113
MS.gene40990.t1	MTR_3g105900	26.810	373	255	8	573	939	99	459	5.35e-25	112
MS.gene40990.t1	MTR_3g105900	25.323	387	277	7	75	454	546	927	1.25e-23	108
MS.gene40990.t1	MTR_3g105900	28.016	257	179	4	682	935	766	1019	2.77e-21	100
MS.gene40990.t1	MTR_4g089005	24.013	912	565	21	108	947	89	944	3.81e-44	174

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40990.t1	AT5G06400	52.321	948	438	5	9	955	93	1027	0.0	1021
MS.gene40990.t1	AT4G31850	23.318	892	573	15	107	890	217	1105	4.61e-58	218
MS.gene40990.t1	AT4G31850	27.701	361	256	3	601	959	218	575	9.62e-36	147
MS.gene40990.t1	AT4G31850	24.147	381	279	5	58	431	728	1105	6.09e-26	115
MS.gene40990.t1	AT4G31850	19.811	742	472	13	180	914	79	704	7.94e-26	115
MS.gene40990.t1	AT4G31850	25.000	336	245	3	620	952	342	673	1.13e-25	115
MS.gene40990.t1	AT4G31850	29.500	200	140	1	749	947	822	1021	9.58e-24	108
MS.gene40990.t1	AT4G31850	27.887	355	246	7	111	460	116	465	4.28e-23	106
MS.gene40990.t1	AT4G31850	23.355	304	222	5	640	937	572	870	2.16e-15	81.6
MS.gene40990.t1	AT4G31850	23.509	285	172	4	696	934	126	410	1.93e-13	75.5

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Find 192 sgRNAs with CRISPR-Local

Find 227 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCCTCAAACCCAAATG+CGG	0.668788	1.3:-40719223	None:intergenic
AAAAGCTATTCAGATATATG+AGG	0.511183	1.3:+40721448	MS.gene40990:CDS
AAAATCGTATATCCGAAGCC+TGG	0.545856	1.3:+40720163	MS.gene40990:CDS
AAATTCCGCATTTGGGTTTG+AGG	0.451267	1.3:+40719218	MS.gene40990:CDS
AACATTGCAATCAAAATTGC+AGG	0.368044	1.3:+40720774	MS.gene40990:CDS
AACTGGTTGAAGCTTAAGGA+TGG	0.569370	1.3:+40719247	MS.gene40990:CDS
AACTTACATGGAAACCAAGG+GGG	0.726033	1.3:+40720356	MS.gene40990:CDS
AAGAGAAGGGACATTGTTGT+GGG	0.478916	1.3:+40719892	MS.gene40990:CDS
AAGATGTTCGCGATGTATGT+AGG	0.541530	1.3:+40720568	MS.gene40990:CDS
AATACCATGTTGTGTCTTGC+CGG	0.367869	1.3:+40719295	MS.gene40990:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACATTGCAATCAAAATTGC+AGG	+	chr1.3:40720774-40720793	MS.gene40990:CDS	30.0%
ACATTGCAATCAAAATTGCA+GGG	+	chr1.3:40720775-40720794	MS.gene40990:CDS	30.0%
ACGATCATGATCATGATTTA+CGG	+	chr1.3:40720879-40720898	MS.gene40990:CDS	30.0%
ACTAAGGTCTCAAAATATTC+AGG	-	chr1.3:40719814-40719833	None:intergenic	30.0%
AGGAATTAAACCAGATATTG+TGG	+	chr1.3:40720107-40720126	MS.gene40990:CDS	30.0%
ATAACTTACATGGAAACCAA+GGG	+	chr1.3:40720354-40720373	MS.gene40990:CDS	30.0%
ATATGAGGAAATGCTAGAAT+CGG	+	chr1.3:40721463-40721482	MS.gene40990:CDS	30.0%
ATATTGCTATGGAGTTCTAT+AGG	+	chr1.3:40719545-40719564	MS.gene40990:CDS	30.0%
ATCCAATAACATCAGAAACA+TGG	+	chr1.3:40720856-40720875	MS.gene40990:CDS	30.0%
ATGGTCCTTTGAATTTCATA+CGG	-	chr1.3:40721577-40721596	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	40718947	40721826	40718947	ID=MS.gene40990
chr1.3	mRNA	40718947	40721826	40718947	ID=MS.gene40990.t1;Parent=MS.gene40990
chr1.3	exon	40718947	40721826	40718947	ID=MS.gene40990.t1.exon1;Parent=MS.gene40990.t1
chr1.3	CDS	40718947	40721826	40718947	ID=cds.MS.gene40990.t1;Parent=MS.gene40990.t1

Gene Sequence

>MS.gene40990

ATGGGTTTTAAGGAGAAACATGAGTGCACTGAACCTGTTTGTGAAAATGCCGCAGAGAGTGTGGTTCTTGATAAAGATGAAAACTTTACCGTTTTGGAAGATGCCCAGTTGGTTAAAATGGGAGAAGAAGATATGTGTCGAATGGTGGGTGAGATTATGGAAATAATTCGAGGTGAAAATGGTTCGGTTTCTGTGGAAGAGCGATTAGAAAAGATGGGTTATTGTGAATTGAATGTTGAGGTTTTCGATAGAGTTTTGAAAAGGTGTTTTAAAATTCCGCATTTGGGTTTGAGGGTTTTTAACTGGTTGAAGCTTAAGGATGGTTTTCGTCATACAACACAGACTTATAATACCATGTTGTGTCTTGCCGGAGAAGGTAAGGAGTTTGGGTTGGTGAAGAAGTTGGTGGAGGAAATGGATGAATGTGGAGTTCAAAAGGATGTAAATACGTGGACCATTCTTGTGTCTCTTTATGGGAAGGCGAAGAAAATCAGTGAAGCTTTGTTGGCGTTTGAAAATATGCAAAAGTGTGGCTGTGAACCTGATGTGGTTTCGTATAGAACGATCATTCGTTTGCTTTGTAGTTCGGGTAAGGGTGATATTGCTATGGAGTTCTATAGGGACATGGTCAAGAAGGACATTGTACTTGATGATGTAAGGTTGTATAAGATGCTTATGAACTGTATGGCAGAATCAGGAGATGTTGCAGCTGTTGGTTTGCTTGGAAATGACATGACTCGGTTGTGTCTGATGCCGGAAAACAGTGTTTTTGGGTGTATGCTTAAGAGCTTTTGTATTTCTGGTAGGATTAAAGAAGCTTTGGAATTGATTCGTGACCTCAAATATAAAGATGTAGTTCTTGAACCTGAATATTTTGAGACCTTAGTGAGAGGGCTGTGTAAGGCAGGAAGGATTTCAGACGCTTTAGAGATTGTTGAAATTATGAAGAGAAGGGACATTGTTGTGGGGAACGTTCAAGGGATTATCATAAATGGCTATTTACGGAGAAACGATGTTTGCTTGGCACTTGATGTGTTTCAAAGCATGAAAGAATCTGGTTATGTGCCTACAGTTTCCTCATATACTGAACTGATACAGCATCTGTTTAAGTTGAGTAGGAATGAAGAAGCTTGCATGCTGTATGATGAGATGCTCGGAAAAGGAATTAAACCAGATATTGTGGCCATAACAGCCATGGCTGCAGGCCATGTTTCACAAAATCGTATATCCGAAGCCTGGAAAATTTTCAAGAGTATGGAAAGCCAAGGCATCAAGCCTACATGGAAGTCGTATTCGGTATTTATTAAGGAGCTTTGCAAGGCTTCAAAGACCGATGACATTGTCAAAGTATTGTATGAAATGCAGTCTTCAAAGATTGTAATCAAAGATGAAGTATTCCGTTGGGTTATAACTTACATGGAAACCAAGGGGGAGTTTGCTTTAAAAGAGAGAGTGCAAAAGATGCATACAACATCTAAACTCTATCCTGAAAATTTTGAGGAGTCTGAAAAACGAGTGTCATTGAGAAATGAGGTGGAAGAAGATAGAGGAGTTGACCAACCAAAATCAGAAAAGGTAGACTGCTCATTACTAATTCCAATTCTCAAGACTTACAGTGAGCAAGATGTTCGCGATGTATGTAGGATTCTTTCATCCTCTCTAGATTGGTCTTCAATCCAAGAAAAGTTAGAGATAAGTAACATTGAGTTCACCCCAGAATTTGTTATGGAGATAATGCAAAGCTGCAGTATGCATGGCTGCTCGGTGCTAAATTTCTTTTCGTGGGTGGGAAAGAGACCTGGCTACAGACACACCACAGAATCATACAACATTGCAATCAAAATTGCAGGGCGCGGGAAAGATTTCAAGCACATGCGCAGCCTGTTATATGAAATGAGAAGAAACAATTATCCAATAACATCAGAAACATGGACGATCATGATCATGATTTACGGCCGAACAGGTTTGACAGAGATGGCCATGAATTGTTTCAAAGAGATGAAAGATGGTGGTTATTGCCCAAGTAGGAGTACATACAAGTATCTGATCATCGCCTTATGTGGGAGGAAAGGAAGGAAAATTGATGATGCTCTCAAAATATACGGTGAGATGATTAATTCCGGACATGTCCCAGACAAAGAATTGATTGAAACCTACCTTGGTTGCTTATGTGAAATGGGTAGCATTGTAGAGGCTAGGAAATGCATAGATTCACTTCAAAGATTCGGCTACACGGTCCCTCTTAGCTACTCGTTGTTTATAAGAGCTCTTTGTAGAGCTAGAAAAGTGGAAGAAGCATTGAAATTAGTTGAAGAAGCTGGTGCAGAGAAAACTAATGTTGAAAAGCTAACTTATGGAAGTATTGTACATGGTTTATTACAAAAGGGTAAACTAGAAGAAGCATTAACCAAGGTGAATACAATGAAACAAGAAGGAATAACACCTACAATACATGTTTACACATCTTTAATAGTTCATTTCTTTAAAGAGAAACATGTAGAAAAAGCTATTCAGATATATGAGGAAATGCTAGAATCGGGTTATGAACCAAATGTTGTTACATATTCGGCACTTATACGTGGGTACATGAACGTGGAGAGGTATAATGATGCATGGAATGTGTTCTACCGTATGAAATTCAAAGGACCATTTCCTGATTTTAAAACATATTCTATGTTCCTTTCTTGTCTTTGCAAAGTTGGAAGATCTGAAGAAGCAATGAGACTTCTTACTGAAATGTTGGAGAGTGGGATTGTTCCTAGTACTGTTAACTTTAGAACAGTTTTTTATGGGTTGAATAGAGAAGGGAAACAAGGTTTAGCACGTGTTGTGTTGCAACAAAAATCAGAACTTATTAGAAAGCGCAAGCTCATAACTTGA

Protein sequence

>MS.gene40990.t1

MGFKEKHECTEPVCENAAESVVLDKDENFTVLEDAQLVKMGEEDMCRMVGEIMEIIRGENGSVSVEERLEKMGYCELNVEVFDRVLKRCFKIPHLGLRVFNWLKLKDGFRHTTQTYNTMLCLAGEGKEFGLVKKLVEEMDECGVQKDVNTWTILVSLYGKAKKISEALLAFENMQKCGCEPDVVSYRTIIRLLCSSGKGDIAMEFYRDMVKKDIVLDDVRLYKMLMNCMAESGDVAAVGLLGNDMTRLCLMPENSVFGCMLKSFCISGRIKEALELIRDLKYKDVVLEPEYFETLVRGLCKAGRISDALEIVEIMKRRDIVVGNVQGIIINGYLRRNDVCLALDVFQSMKESGYVPTVSSYTELIQHLFKLSRNEEACMLYDEMLGKGIKPDIVAITAMAAGHVSQNRISEAWKIFKSMESQGIKPTWKSYSVFIKELCKASKTDDIVKVLYEMQSSKIVIKDEVFRWVITYMETKGEFALKERVQKMHTTSKLYPENFEESEKRVSLRNEVEEDRGVDQPKSEKVDCSLLIPILKTYSEQDVRDVCRILSSSLDWSSIQEKLEISNIEFTPEFVMEIMQSCSMHGCSVLNFFSWVGKRPGYRHTTESYNIAIKIAGRGKDFKHMRSLLYEMRRNNYPITSETWTIMIMIYGRTGLTEMAMNCFKEMKDGGYCPSRSTYKYLIIALCGRKGRKIDDALKIYGEMINSGHVPDKELIETYLGCLCEMGSIVEARKCIDSLQRFGYTVPLSYSLFIRALCRARKVEEALKLVEEAGAEKTNVEKLTYGSIVHGLLQKGKLEEALTKVNTMKQEGITPTIHVYTSLIVHFFKEKHVEKAIQIYEEMLESGYEPNVVTYSALIRGYMNVERYNDAWNVFYRMKFKGPFPDFKTYSMFLSCLCKVGRSEEAMRLLTEMLESGIVPSTVNFRTVFYGLNREGKQGLARVVLQQKSELIRKRKLIT