Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41021.t1 | XP_003590328.1 | 99.2 | 261 | 2 | 0 | 1 | 261 | 1 | 261 | 7.10E-134 | 486.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41021.t1 | Q9ZSD4 | 70.4 | 267 | 70 | 2 | 1 | 261 | 1 | 264 | 2.5e-95 | 350.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41021.t1 | B7FI20 | 99.2 | 261 | 2 | 0 | 1 | 261 | 1 | 261 | 5.1e-134 | 486.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050363 | MS.gene41021 | 0.822999 | 1.75E-53 | -1.69E-46 |
| MS.gene051127 | MS.gene41021 | 0.804938 | 1.70E-49 | -1.69E-46 |
| MS.gene053561 | MS.gene41021 | 0.807413 | 5.12E-50 | -1.69E-46 |
| MS.gene058628 | MS.gene41021 | 0.812412 | 4.30E-51 | -1.69E-46 |
| MS.gene058629 | MS.gene41021 | 0.803082 | 4.13E-49 | -1.69E-46 |
| MS.gene058630 | MS.gene41021 | 0.811522 | 6.71E-51 | -1.69E-46 |
| MS.gene059690 | MS.gene41021 | 0.865116 | 7.45E-65 | -1.69E-46 |
| MS.gene059691 | MS.gene41021 | 0.840851 | 6.78E-58 | -1.69E-46 |
| MS.gene059694 | MS.gene41021 | 0.864674 | 1.03E-64 | -1.69E-46 |
| MS.gene059697 | MS.gene41021 | 0.861794 | 7.99E-64 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41021.t1 | MTR_1g056550 | 99.234 | 261 | 2 | 0 | 1 | 261 | 1 | 261 | 0.0 | 526 |
| MS.gene41021.t1 | MTR_1g056560 | 66.292 | 267 | 82 | 3 | 1 | 261 | 1 | 265 | 1.25e-124 | 360 |
| MS.gene41021.t1 | MTR_7g106420 | 67.816 | 261 | 71 | 2 | 1 | 261 | 1 | 248 | 1.13e-123 | 356 |
| MS.gene41021.t1 | MTR_4g090900 | 58.779 | 262 | 99 | 3 | 1 | 261 | 1 | 254 | 2.19e-107 | 315 |
| MS.gene41021.t1 | MTR_2g012270 | 56.870 | 262 | 103 | 2 | 1 | 261 | 1 | 253 | 5.44e-105 | 309 |
| MS.gene41021.t1 | MTR_5g012010 | 42.804 | 271 | 144 | 3 | 1 | 260 | 1 | 271 | 1.85e-73 | 229 |
| MS.gene41021.t1 | MTR_6g028140 | 44.444 | 261 | 134 | 3 | 1 | 259 | 1 | 252 | 9.26e-70 | 219 |
| MS.gene41021.t1 | MTR_2g088700 | 41.264 | 269 | 154 | 2 | 1 | 268 | 1 | 266 | 3.31e-64 | 205 |
| MS.gene41021.t1 | MTR_2g088700 | 41.538 | 260 | 148 | 2 | 1 | 259 | 1 | 257 | 7.05e-63 | 201 |
| MS.gene41021.t1 | MTR_5g020670 | 39.847 | 261 | 145 | 4 | 1 | 259 | 1 | 251 | 6.76e-54 | 178 |
| MS.gene41021.t1 | MTR_8g073900 | 31.361 | 169 | 92 | 3 | 1 | 168 | 1 | 146 | 2.76e-16 | 75.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41021.t1 | AT3G11820 | 74.043 | 235 | 61 | 0 | 27 | 261 | 30 | 264 | 4.52e-125 | 361 |
| MS.gene41021.t1 | AT3G11820 | 74.678 | 233 | 59 | 0 | 29 | 261 | 1 | 233 | 8.45e-125 | 360 |
| MS.gene41021.t1 | AT1G11250 | 57.471 | 261 | 98 | 1 | 1 | 261 | 1 | 248 | 1.81e-107 | 315 |
| MS.gene41021.t1 | AT3G52400 | 62.642 | 265 | 93 | 3 | 1 | 261 | 1 | 263 | 1.55e-106 | 314 |
| MS.gene41021.t1 | AT1G61290 | 57.854 | 261 | 102 | 1 | 1 | 261 | 1 | 253 | 3.57e-106 | 312 |
| MS.gene41021.t1 | AT1G61290 | 57.854 | 261 | 102 | 1 | 1 | 261 | 1 | 253 | 3.57e-106 | 312 |
| MS.gene41021.t1 | AT4G03330 | 55.344 | 262 | 110 | 2 | 1 | 261 | 1 | 256 | 3.20e-98 | 291 |
| MS.gene41021.t1 | AT3G03800 | 44.444 | 261 | 135 | 4 | 1 | 259 | 1 | 253 | 1.57e-69 | 218 |
| MS.gene41021.t1 | AT3G03800 | 44.444 | 261 | 135 | 4 | 1 | 259 | 1 | 253 | 1.57e-69 | 218 |
| MS.gene41021.t1 | AT1G08560 | 41.045 | 268 | 143 | 4 | 1 | 260 | 1 | 261 | 1.20e-64 | 206 |
| MS.gene41021.t1 | AT5G08080 | 46.332 | 259 | 132 | 2 | 1 | 259 | 1 | 252 | 3.36e-63 | 202 |
| MS.gene41021.t1 | AT5G08080 | 46.332 | 259 | 132 | 2 | 1 | 259 | 1 | 252 | 3.36e-63 | 202 |
| MS.gene41021.t1 | AT5G08080 | 44.444 | 270 | 132 | 4 | 1 | 259 | 1 | 263 | 3.11e-61 | 197 |
| MS.gene41021.t1 | AT2G18260 | 38.288 | 222 | 130 | 2 | 40 | 261 | 46 | 260 | 2.38e-47 | 161 |
| MS.gene41021.t1 | AT2G18260 | 38.288 | 222 | 130 | 2 | 40 | 261 | 46 | 260 | 2.38e-47 | 161 |
| MS.gene41021.t1 | AT5G08080 | 42.995 | 207 | 111 | 2 | 1 | 207 | 1 | 200 | 1.24e-37 | 134 |
| MS.gene41021.t1 | AT5G08080 | 42.995 | 207 | 111 | 2 | 1 | 207 | 1 | 200 | 1.24e-37 | 134 |
Find 94 sgRNAs with CRISPR-Local
Find 343 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGCCTCTCTTGAATTTCT+TGG | 0.088352 | 1.3:+41466183 | None:intergenic |
| GGAGCTTCACCAAGTGTTTA+TGG | 0.187321 | 1.3:-41466129 | MS.gene41021:CDS |
| AGCCACGTCAGCATCCATTT+TGG | 0.265957 | 1.3:+41467398 | None:intergenic |
| CAGAGGATATTTGTTGTCTA+AGG | 0.290767 | 1.3:+41467199 | None:intergenic |
| GTTTATGGACATGTCTGTTT+TGG | 0.324253 | 1.3:-41466114 | MS.gene41021:CDS |
| GTGCATGAAAACCACTTTCT+AGG | 0.327496 | 1.3:+41462846 | None:intergenic |
| CTCCTTTCTCCCACAACTCT+TGG | 0.336774 | 1.3:+41462932 | None:intergenic |
| TCCTCTCATGGGAGACTCTA+AGG | 0.337274 | 1.3:+41467463 | None:intergenic |
| CACAACTCTTGGTGGGCCTC+TGG | 0.340203 | 1.3:+41462943 | None:intergenic |
| GAAGGATATTCGCTCCAAAA+TGG | 0.357939 | 1.3:-41467412 | MS.gene41021:CDS |
| TGTTTGCTCTACCTTGTTGT+TGG | 0.360573 | 1.3:+41466219 | None:intergenic |
| CTTGATCCGAGTTGCGGAAC+CGG | 0.374505 | 1.3:+41467625 | None:intergenic |
| TGGTTTGAGGAAGAAGCTTA+AGG | 0.379675 | 1.3:-41467244 | MS.gene41021:CDS |
| TGGCCAAGAGACATAGCTTT+GGG | 0.383685 | 1.3:-41462884 | MS.gene41021:CDS |
| AGTAGGAGTTTGCCTGGTGC+TGG | 0.388193 | 1.3:-41467309 | MS.gene41021:CDS |
| GAGTTTGCCTGGTGCTGGAC+CGG | 0.392987 | 1.3:-41467304 | MS.gene41021:CDS |
| GAAGGGTCTTGCTCCTCTCA+TGG | 0.411456 | 1.3:+41467451 | None:intergenic |
| TCAATCACAAGGTGATCAAT+TGG | 0.422910 | 1.3:-41466090 | MS.gene41021:CDS |
| CAAACTCCTACTAGCCTCAT+TGG | 0.425618 | 1.3:+41467320 | None:intergenic |
| TGCTGGACCGGGTTCGTCCT+CGG | 0.427607 | 1.3:-41467292 | MS.gene41021:CDS |
| TCACAGCTTTCGCGCTGTGA+AGG | 0.430417 | 1.3:+41467433 | None:intergenic |
| ACACCGGTTTGTGCGGTGTT+CGG | 0.434011 | 1.3:+41467561 | None:intergenic |
| TATTCTCCGGCTCTTTCTCC+CGG | 0.436699 | 1.3:-41467644 | MS.gene41021:CDS |
| CTTTCTCCCACAACTCTTGG+TGG | 0.437971 | 1.3:+41462935 | None:intergenic |
| CTCTTGGCCATCCGCCATTA+CGG | 0.469138 | 1.3:+41462897 | None:intergenic |
| AAGATGAATGATTTATTCTC+CGG | 0.470296 | 1.3:-41467657 | MS.gene41021:CDS |
| GCCTCTGGAATGATCATTCT+CGG | 0.471247 | 1.3:+41462958 | None:intergenic |
| CACAGCTTTCGCGCTGTGAA+GGG | 0.471963 | 1.3:+41467434 | None:intergenic |
| CACCAAGAGTTGTGGGAGAA+AGG | 0.473902 | 1.3:-41462934 | MS.gene41021:CDS |
| ATCACATGGTGATGGTTGTC+CGG | 0.480288 | 1.3:+41467597 | None:intergenic |
| TTTCTCCCGGTTCCGCAACT+CGG | 0.484658 | 1.3:-41467631 | MS.gene41021:CDS |
| AGTTTGCCTGGTGCTGGACC+GGG | 0.485224 | 1.3:-41467303 | MS.gene41021:CDS |
| AGGTGTTAAAGAGGAGTTGA+AGG | 0.487492 | 1.3:-41467508 | MS.gene41021:CDS |
| TTTCTCCCACAACTCTTGGT+GGG | 0.488137 | 1.3:+41462936 | None:intergenic |
| ATGGCCAAGAGACATAGCTT+TGG | 0.488572 | 1.3:-41462885 | MS.gene41021:CDS |
| GACGAACCCGGTCCAGCACC+AGG | 0.494596 | 1.3:+41467297 | None:intergenic |
| GACCGGGTTCGTCCTCGGAC+CGG | 0.495705 | 1.3:-41467287 | MS.gene41021:CDS |
| AAGGGTCTTGCTCCTCTCAT+GGG | 0.499489 | 1.3:+41467452 | None:intergenic |
| AGAAGTCGAAGGTGTTAAAG+AGG | 0.506880 | 1.3:-41467517 | MS.gene41021:CDS |
| TCCTACTAGCCTCATTGGAC+CGG | 0.514248 | 1.3:+41467325 | None:intergenic |
| TCGCCGAACACCGCACAAAC+CGG | 0.514472 | 1.3:-41467564 | MS.gene41021:CDS |
| AGAGGCCCACCAAGAGTTGT+GGG | 0.518069 | 1.3:-41462941 | MS.gene41021:CDS |
| CTCCAAAATGGATGCTGACG+TGG | 0.519276 | 1.3:-41467400 | MS.gene41021:CDS |
| GTCCGGTCCGAGGACGAACC+CGG | 0.520586 | 1.3:+41467285 | None:intergenic |
| GAGGCTAGTAGGAGTTTGCC+TGG | 0.520730 | 1.3:-41467315 | MS.gene41021:CDS |
| ACCGGTCCAATGAGGCTAGT+AGG | 0.527254 | 1.3:-41467326 | MS.gene41021:CDS |
| TACAGTTTCTCTATATTCAG+AGG | 0.527444 | 1.3:+41467182 | None:intergenic |
| TTGATCCGAGTTGCGGAACC+GGG | 0.529003 | 1.3:+41467626 | None:intergenic |
| GAAGAAGCTTAAGGATTCCA+TGG | 0.529595 | 1.3:-41467235 | MS.gene41021:CDS |
| CAGAGGCCCACCAAGAGTTG+TGG | 0.535134 | 1.3:-41462942 | MS.gene41021:CDS |
| ACCGGTCAAGTGCCTCGAGC+CGG | 0.535814 | 1.3:+41467343 | None:intergenic |
| AGAGATAGAGAGAAATCTCA+TGG | 0.536636 | 1.3:-41466150 | MS.gene41021:CDS |
| TCCGGCTCGAGGCACTTGAC+CGG | 0.547953 | 1.3:-41467344 | MS.gene41021:CDS |
| TTTGTCATCAGGATTCTCTC+CGG | 0.554404 | 1.3:+41467137 | None:intergenic |
| TATACATACCAGTGGAAATG+AGG | 0.558156 | 1.3:+41467103 | None:intergenic |
| AAGGTTGTTAAAGCTATCCA+TGG | 0.560718 | 1.3:+41467218 | None:intergenic |
| AGGTTCAGTGGTGACCGTAA+TGG | 0.568448 | 1.3:-41462911 | MS.gene41021:CDS |
| CGTAGATACTATACTGTCAC+CGG | 0.569775 | 1.3:-41467156 | MS.gene41021:CDS |
| CAGACATGTCCATAAACACT+TGG | 0.571715 | 1.3:+41466120 | None:intergenic |
| GTGGGAGAAAGGAGGTTCAG+TGG | 0.572566 | 1.3:-41462923 | MS.gene41021:CDS |
| GTTGACCTCCTCATTTCCAC+TGG | 0.573133 | 1.3:-41467111 | MS.gene41021:intron |
| GCGGAACCGGGAGAAAGAGC+CGG | 0.578923 | 1.3:+41467638 | None:intergenic |
| ACAAGGTAGAGCAAACATCA+TGG | 0.584967 | 1.3:-41466213 | MS.gene41021:CDS |
| CATCTGTGGTGAGTGGTTTG+AGG | 0.587043 | 1.3:-41467257 | MS.gene41021:CDS |
| TCACAGCGCGAAAGCTGTGA+AGG | 0.594302 | 1.3:-41467430 | MS.gene41021:CDS |
| TCACCACAGATGTTCTAGTC+CGG | 0.594304 | 1.3:+41467268 | None:intergenic |
| AAGCTAAACTTGTTAAACTC+CGG | 0.596720 | 1.3:-41467362 | MS.gene41021:CDS |
| GCCTTAGAGTCTCCCATGAG+AGG | 0.597298 | 1.3:-41467464 | MS.gene41021:CDS |
| GTGGTGACCGTAATGGCGGA+TGG | 0.609291 | 1.3:-41462904 | MS.gene41021:CDS |
| GAATTTGTCAAGATGAACAC+CGG | 0.611672 | 1.3:+41467545 | None:intergenic |
| TTCAGTGGTGACCGTAATGG+CGG | 0.615023 | 1.3:-41462908 | MS.gene41021:CDS |
| ACATTTCGATCACATGGTGA+TGG | 0.618806 | 1.3:+41467589 | None:intergenic |
| GCGAAACTTGATCCGAGTTG+CGG | 0.621819 | 1.3:+41467619 | None:intergenic |
| AAATTCTTTGAAGAAGTCGA+AGG | 0.621972 | 1.3:-41467528 | MS.gene41021:CDS |
| GCGATGACATTTCGATCACA+TGG | 0.626915 | 1.3:+41467583 | None:intergenic |
| CAACTCGGATCAAGTTTCGC+CGG | 0.628630 | 1.3:-41467616 | MS.gene41021:CDS |
| CACTTTCTAGGTCTACCACC+AGG | 0.629958 | 1.3:+41462858 | None:intergenic |
| AGTGGAAATGAGGAGGTCAA+CGG | 0.635845 | 1.3:+41467113 | None:intergenic |
| CTGGTGGTAGACCTAGAAAG+TGG | 0.639368 | 1.3:-41462857 | MS.gene41021:CDS |
| GGCCAAGAGACATAGCTTTG+GGG | 0.642392 | 1.3:-41462883 | MS.gene41021:CDS |
| GCCAAGAGACATAGCTTTGG+GGG | 0.644875 | 1.3:-41462882 | MS.gene41021:CDS |
| ACGAATTAGCACGTGCCACG+TGG | 0.646541 | 1.3:+41466054 | None:intergenic |
| GGCACTTGACCGGTCCAATG+AGG | 0.650152 | 1.3:-41467334 | MS.gene41021:CDS |
| CAAGAGTTGTGGGAGAAAGG+AGG | 0.650803 | 1.3:-41462931 | MS.gene41021:CDS |
| CAATCCAAGAAATTCAAGAG+AGG | 0.658855 | 1.3:-41466187 | MS.gene41021:CDS |
| ACTTGTTAAACTCCGGCTCG+AGG | 0.660615 | 1.3:-41467355 | MS.gene41021:CDS |
| ACTAGAACATCTGTGGTGAG+TGG | 0.667098 | 1.3:-41467264 | MS.gene41021:CDS |
| ACATACCAGTGGAAATGAGG+AGG | 0.671780 | 1.3:+41467106 | None:intergenic |
| GCCGAGAATGATCATTCCAG+AGG | 0.673193 | 1.3:-41462959 | MS.gene41021:CDS |
| AAGATGAACACCGGTTTGTG+CGG | 0.675270 | 1.3:+41467554 | None:intergenic |
| GGACCGGACTAGAACATCTG+TGG | 0.682428 | 1.3:-41467271 | MS.gene41021:CDS |
| AGATGTTCTAGTCCGGTCCG+AGG | 0.692794 | 1.3:+41467275 | None:intergenic |
| TCTGGAATGATCATTCTCGG+CGG | 0.721299 | 1.3:+41462961 | None:intergenic |
| GGATAATATTGAAAGCCACG+TGG | 0.768363 | 1.3:-41466069 | MS.gene41021:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATGAAATTTATTGT+TGG | - | chr1.3:41467145-41467164 | MS.gene41021:CDS | 10.0% |
| !! | ATGTAAAATTAATAAATATC+AGG | - | chr1.3:41467060-41467079 | MS.gene41021:intron | 10.0% |
| !! | CTGAATAAAAAAAATATATA+AGG | + | chr1.3:41465004-41465023 | None:intergenic | 10.0% |
| !! | TAAAATAACTAAAAAACTAA+CGG | - | chr1.3:41466070-41466089 | MS.gene41021:CDS | 10.0% |
| !! | TATAACTTATATAAGTATAT+TGG | + | chr1.3:41464057-41464076 | None:intergenic | 10.0% |
| !! | TGTAAAATTAATAAATATCA+GGG | - | chr1.3:41467061-41467080 | MS.gene41021:intron | 10.0% |
| !! | TTAAATTTCATAAAGATTTA+TGG | + | chr1.3:41463607-41463626 | None:intergenic | 10.0% |
| !!! | AATTTTTAACAAAATATTGA+CGG | + | chr1.3:41467016-41467035 | None:intergenic | 10.0% |
| !! | AATAAAAAGAAACTTAAGTA+TGG | + | chr1.3:41464025-41464044 | None:intergenic | 15.0% |
| !! | GTTTATTAAATTTATATGTG+TGG | - | chr1.3:41464928-41464947 | MS.gene41021:intron | 15.0% |
| !! | TAAGTTATATGTATAAAATC+CGG | - | chr1.3:41464068-41464087 | MS.gene41021:intron | 15.0% |
| !! | TGATAACAAAAAACAAAAAA+TGG | - | chr1.3:41465257-41465276 | MS.gene41021:intron | 15.0% |
| !! | TTATAATATTATAATCTTGG+TGG | - | chr1.3:41464625-41464644 | MS.gene41021:intron | 15.0% |
| !!! | ACCTTATTTTAAATTTGTTT+TGG | - | chr1.3:41466498-41466517 | MS.gene41021:intron | 15.0% |
| !!! | ATACATTTTAATAATTCATG+TGG | - | chr1.3:41463485-41463504 | MS.gene41021:intron | 15.0% |
| !!! | ATATTTTTTCATATATTGGT+TGG | - | chr1.3:41464729-41464748 | MS.gene41021:intron | 15.0% |
| !!! | ATTTTTAACAAAATATTGAC+GGG | + | chr1.3:41467015-41467034 | None:intergenic | 15.0% |
| !!! | GTTGATAATTTTTTCTAAAA+TGG | + | chr1.3:41465512-41465531 | None:intergenic | 15.0% |
| !!! | TACTTGATTCATTTATTTTT+AGG | + | chr1.3:41463983-41464002 | None:intergenic | 15.0% |
| !!! | TCCAAAACAAATTTAAAATA+AGG | + | chr1.3:41466502-41466521 | None:intergenic | 15.0% |
| !!! | TGTAGATTAATCTATTTTTA+AGG | - | chr1.3:41463568-41463587 | MS.gene41021:intron | 15.0% |
| !!! | TTTTTTTTAACAAATCAAGA+TGG | - | chr1.3:41465063-41465082 | MS.gene41021:intron | 15.0% |
| !! | AGTTTCTATGTAATTGTTTA+TGG | + | chr1.3:41465204-41465223 | None:intergenic | 20.0% |
| !! | GATGAATTATTAGTTGAATT+AGG | - | chr1.3:41465431-41465450 | MS.gene41021:intron | 20.0% |
| !!! | AAAACAAACATTTGAAATAC+AGG | - | chr1.3:41466299-41466318 | MS.gene41021:intron | 20.0% |
| !!! | AACTATTTTTTAAGGACAAT+AGG | + | chr1.3:41464583-41464602 | None:intergenic | 20.0% |
| !!! | AATGGTTTTAGATTCAATTT+CGG | + | chr1.3:41463912-41463931 | None:intergenic | 20.0% |
| !!! | ACATCTTTTTAATGTAACAT+AGG | - | chr1.3:41464223-41464242 | MS.gene41021:intron | 20.0% |
| !!! | AGTCTCAAAACTATTTTTTA+AGG | + | chr1.3:41464591-41464610 | None:intergenic | 20.0% |
| !!! | ATCTTAGTTAATTTTCTTTC+CGG | - | chr1.3:41463764-41463783 | MS.gene41021:intron | 20.0% |
| !!! | ATTTTAATAATTCATGTGGA+AGG | - | chr1.3:41463489-41463508 | MS.gene41021:intron | 20.0% |
| !!! | ATTTTTATTTCAGAATCGAA+AGG | + | chr1.3:41463676-41463695 | None:intergenic | 20.0% |
| !!! | GTGATAATGTTGATATTATT+AGG | - | chr1.3:41463872-41463891 | MS.gene41021:intron | 20.0% |
| !!! | TTAAGAAAACTTTGAAATGA+TGG | - | chr1.3:41465589-41465608 | MS.gene41021:intron | 20.0% |
| !!! | TTGAAGTGAAAGTTTTTAAT+AGG | - | chr1.3:41464126-41464145 | MS.gene41021:intron | 20.0% |
| !!! | TTTTTATTTCAGAATCGAAA+GGG | + | chr1.3:41463675-41463694 | None:intergenic | 20.0% |
| ! | AAAAAACAAAAAATGGATGC+AGG | - | chr1.3:41465264-41465283 | MS.gene41021:intron | 25.0% |
| ! | AAAAAAGAAACCATATACTC+CGG | + | chr1.3:41464090-41464109 | None:intergenic | 25.0% |
| ! | AAAAACAAAAAATGGATGCA+GGG | - | chr1.3:41465265-41465284 | MS.gene41021:intron | 25.0% |
| ! | AAAATCACTGGTAAACAAAT+TGG | + | chr1.3:41465660-41465679 | None:intergenic | 25.0% |
| ! | AACTTACACATACAACTAAA+TGG | + | chr1.3:41463930-41463949 | None:intergenic | 25.0% |
| ! | AACTTGACATAAAAACGAAA+CGG | + | chr1.3:41466399-41466418 | None:intergenic | 25.0% |
| ! | AATAATGAGGAGAATTATGA+TGG | + | chr1.3:41464542-41464561 | None:intergenic | 25.0% |
| ! | AATGTACAACAATTCTATCA+AGG | + | chr1.3:41467217-41467236 | None:intergenic | 25.0% |
| ! | ATGAATGTTAGCATTTGATT+TGG | - | chr1.3:41465817-41465836 | MS.gene41021:intron | 25.0% |
| ! | ATTAAATTTATATGTGTGGC+AGG | - | chr1.3:41464932-41464951 | MS.gene41021:intron | 25.0% |
| ! | CAACATGTGTATTAAAAGAA+TGG | - | chr1.3:41467111-41467130 | MS.gene41021:intron | 25.0% |
| ! | CTATGATCAAGATAATAATG+AGG | + | chr1.3:41464555-41464574 | None:intergenic | 25.0% |
| ! | GAAATTTAAGAGTTAAGAAG+AGG | - | chr1.3:41466604-41466623 | MS.gene41021:intron | 25.0% |
| ! | GTATAAATAAGAGCAATCAT+AGG | + | chr1.3:41466045-41466064 | None:intergenic | 25.0% |
| ! | TAATGTTGATATTATTAGGC+TGG | - | chr1.3:41463876-41463895 | MS.gene41021:intron | 25.0% |
| ! | TATTGATCCTCATAATTCTA+AGG | - | chr1.3:41467504-41467523 | MS.gene41021:CDS | 25.0% |
| ! | TCTTAACTCTTAAATTTCTG+AGG | + | chr1.3:41466602-41466621 | None:intergenic | 25.0% |
| !! | AAGTGAAAGTTTTTAATAGG+AGG | - | chr1.3:41464129-41464148 | MS.gene41021:intron | 25.0% |
| !! | CATTCTTTTAATACACATGT+TGG | + | chr1.3:41467113-41467132 | None:intergenic | 25.0% |
| !! | TCAAGAATTTTATCCCATTT+TGG | - | chr1.3:41464840-41464859 | MS.gene41021:intron | 25.0% |
| !! | TCAAGTTGTGTTAACAAATT+TGG | - | chr1.3:41466444-41466463 | MS.gene41021:intron | 25.0% |
| !! | TTTTCTTCCTTAGAATTATG+AGG | + | chr1.3:41467514-41467533 | None:intergenic | 25.0% |
| !!! | AATTTGTTTACCAGTGATTT+TGG | - | chr1.3:41465659-41465678 | MS.gene41021:intron | 25.0% |
| !!! | AGCTTTGTTTTTTTCATCTA+CGG | + | chr1.3:41466575-41466594 | None:intergenic | 25.0% |
| !!! | AGTTTTGAGACTTTTCAAAT+GGG | - | chr1.3:41464599-41464618 | MS.gene41021:intron | 25.0% |
| !!! | CTTAAAGCTTTGAAGATAAA+AGG | - | chr1.3:41465876-41465895 | MS.gene41021:intron | 25.0% |
| !!! | TAGTTTTGAGACTTTTCAAA+TGG | - | chr1.3:41464598-41464617 | MS.gene41021:intron | 25.0% |
| !!! | TTTTCATATATTGGTTGGTT+TGG | - | chr1.3:41464734-41464753 | MS.gene41021:intron | 25.0% |
| AAAAACCCAAAGTTGTATGA+AGG | + | chr1.3:41463740-41463759 | None:intergenic | 30.0% | |
| AAAACAAAAAATGGATGCAG+GGG | - | chr1.3:41465266-41465285 | MS.gene41021:intron | 30.0% | |
| AAGAGCAATCATAGGAAATA+AGG | + | chr1.3:41466037-41466056 | None:intergenic | 30.0% | |
| ACAACTTGACAAAACATTGA+CGG | + | chr1.3:41466433-41466452 | None:intergenic | 30.0% | |
| ACTTGACATAAAAACGAAAC+GGG | + | chr1.3:41466398-41466417 | None:intergenic | 30.0% | |
| AGAGCAATCATAGGAAATAA+GGG | + | chr1.3:41466036-41466055 | None:intergenic | 30.0% | |
| AGGATATAGATGAATGTTCA+TGG | - | chr1.3:41464881-41464900 | MS.gene41021:intron | 30.0% | |
| ATATAGATGAATGTTCATGG+TGG | - | chr1.3:41464884-41464903 | MS.gene41021:intron | 30.0% | |
| ATGTACCTTCATACAACTTT+GGG | - | chr1.3:41463732-41463751 | MS.gene41021:intron | 30.0% | |
| ATTATCAGAATTATCACGCT+CGG | + | chr1.3:41466004-41466023 | None:intergenic | 30.0% | |
| GAAAAAAACATTGCACAACA+TGG | + | chr1.3:41465740-41465759 | None:intergenic | 30.0% | |
| GCATATGCTAGATACAAAAA+AGG | + | chr1.3:41467313-41467332 | None:intergenic | 30.0% | |
| TACAGTTTCTCTATATTCAG+AGG | + | chr1.3:41463316-41463335 | None:intergenic | 30.0% | |
| TCAAACAGAGTAATTTGATC+CGG | + | chr1.3:41463786-41463805 | None:intergenic | 30.0% | |
| TCCAAAAAATTGCACAAACA+GGG | - | chr1.3:41465620-41465639 | MS.gene41021:intron | 30.0% | |
| TGATGATATATACATACCAG+TGG | + | chr1.3:41463403-41463422 | None:intergenic | 30.0% | |
| TGTATAAAATCCGGAGTATA+TGG | - | chr1.3:41464077-41464096 | MS.gene41021:intron | 30.0% | |
| TTAAACCCTACATCTTTAGT+TGG | + | chr1.3:41466368-41466387 | None:intergenic | 30.0% | |
| TTAGATTCAATTTCGGTTGA+AGG | + | chr1.3:41463905-41463924 | None:intergenic | 30.0% | |
| TTCACCATAATATCTGCATT+GGG | - | chr1.3:41467173-41467192 | MS.gene41021:CDS | 30.0% | |
| TTCCAAAAAATTGCACAAAC+AGG | - | chr1.3:41465619-41465638 | MS.gene41021:intron | 30.0% | |
| TTGTATGTGTAAGTTTCAGA+TGG | - | chr1.3:41463935-41463954 | MS.gene41021:intron | 30.0% | |
| TTGTGTATGTGTTTAAGAAG+TGG | + | chr1.3:41465482-41465501 | None:intergenic | 30.0% | |
| ! | AAATTCTTTGAAGAAGTCGA+AGG | - | chr1.3:41462967-41462986 | MS.gene41021:CDS | 30.0% |
| ! | AATTTCTTTCAAGTGTAGGT+TGG | + | chr1.3:41466251-41466270 | None:intergenic | 30.0% |
| ! | CTTGGATAAAACTTGTTTCT+GGG | + | chr1.3:41465552-41465571 | None:intergenic | 30.0% |
| ! | GGTGTAATTCTTTTGTACAA+TGG | + | chr1.3:41464983-41465002 | None:intergenic | 30.0% |
| ! | TCTTGGATAAAACTTGTTTC+TGG | + | chr1.3:41465553-41465572 | None:intergenic | 30.0% |
| ! | TGAAAGTTTTTAATAGGAGG+TGG | - | chr1.3:41464132-41464151 | MS.gene41021:intron | 30.0% |
| ! | TTTTGTATCTAGCATATGCT+AGG | - | chr1.3:41467314-41467333 | MS.gene41021:CDS | 30.0% |
| !! | AAGCTAAACTTGTTAAACTC+CGG | - | chr1.3:41463133-41463152 | MS.gene41021:intron | 30.0% |
| !! | ATGAAATGCATCGACTTAAA+GGG | + | chr1.3:41466720-41466739 | None:intergenic | 30.0% |
| !! | GTTTCGTTTTTATGTCAAGT+TGG | - | chr1.3:41466398-41466417 | MS.gene41021:intron | 30.0% |
| !! | TTTGATTTGGCAGAATCAAA+CGG | - | chr1.3:41465830-41465849 | MS.gene41021:intron | 30.0% |
| !!! | TCATTCCCACTTTTAACTTA+TGG | - | chr1.3:41466668-41466687 | MS.gene41021:intron | 30.0% |
| AAACTCCCATACAAAGAAGT+GGG | - | chr1.3:41465219-41465238 | MS.gene41021:intron | 35.0% | |
| AACCAAACCTCAACATGAAT+AGG | - | chr1.3:41466779-41466798 | MS.gene41021:intron | 35.0% | |
| AACTAGCCAACTAAAGATGT+AGG | - | chr1.3:41466359-41466378 | MS.gene41021:intron | 35.0% | |
| AAGGTTGTTAAAGCTATCCA+TGG | + | chr1.3:41463280-41463299 | None:intergenic | 35.0% | |
| ACCAAATGAATAGCAGAAAG+TGG | - | chr1.3:41464506-41464525 | MS.gene41021:intron | 35.0% | |
| ACTAGCCAACTAAAGATGTA+GGG | - | chr1.3:41466360-41466379 | MS.gene41021:intron | 35.0% | |
| AGAGATAGAGAGAAATCTCA+TGG | - | chr1.3:41464345-41464364 | MS.gene41021:intron | 35.0% | |
| AGTTAAGTCAAATGTGTCGA+AGG | + | chr1.3:41466110-41466129 | None:intergenic | 35.0% | |
| ATCACCCAATGCAGATATTA+TGG | + | chr1.3:41467180-41467199 | None:intergenic | 35.0% | |
| ATCACTTGAGCTGAATCTTA+TGG | + | chr1.3:41463857-41463876 | None:intergenic | 35.0% | |
| CAAAAAGCAATCCAACAACA+AGG | - | chr1.3:41464265-41464284 | MS.gene41021:intron | 35.0% | |
| CAAACATATAAACCAGAGGA+CGG | + | chr1.3:41467270-41467289 | None:intergenic | 35.0% | |
| CAACTTGACAAAACATTGAC+GGG | + | chr1.3:41466432-41466451 | None:intergenic | 35.0% | |
| CAATCCAAGAAATTCAAGAG+AGG | - | chr1.3:41464308-41464327 | MS.gene41021:intron | 35.0% | |
| CATGATCAAACTAGAATCCT+AGG | - | chr1.3:41465714-41465733 | MS.gene41021:intron | 35.0% | |
| CATGTACCTTCATACAACTT+TGG | - | chr1.3:41463731-41463750 | MS.gene41021:intron | 35.0% | |
| CGGATTATTCAAGTATAGAG+AGG | + | chr1.3:41465984-41466003 | None:intergenic | 35.0% | |
| CTAATTCGTATGTTAGAGGT+GGG | - | chr1.3:41464455-41464474 | MS.gene41021:intron | 35.0% | |
| CTAGATACAAAAAAGGCTTG+TGG | + | chr1.3:41467306-41467325 | None:intergenic | 35.0% | |
| CTTCACCATAATATCTGCAT+TGG | - | chr1.3:41467172-41467191 | MS.gene41021:CDS | 35.0% | |
| GAATTTGTCAAGATGAACAC+CGG | + | chr1.3:41462953-41462972 | None:intergenic | 35.0% | |
| GATCAATATACCAGCAACTA+TGG | + | chr1.3:41467492-41467511 | None:intergenic | 35.0% | |
| GGAGTCCATAAGTTAAAAGT+GGG | + | chr1.3:41466676-41466695 | None:intergenic | 35.0% | |
| GTCGATGCATTTCATGTATA+TGG | - | chr1.3:41466725-41466744 | MS.gene41021:intron | 35.0% | |
| TAAGATTGGGTATGTTGTTG+TGG | - | chr1.3:41467463-41467482 | MS.gene41021:CDS | 35.0% | |
| TAATTCGTATGTTAGAGGTG+GGG | - | chr1.3:41464456-41464475 | MS.gene41021:intron | 35.0% | |
| TATACATACCAGTGGAAATG+AGG | + | chr1.3:41463395-41463414 | None:intergenic | 35.0% | |
| TATTGCTACACTGTCAAGAT+AGG | - | chr1.3:41467410-41467429 | MS.gene41021:CDS | 35.0% | |
| TCAATCACAAGGTGATCAAT+TGG | - | chr1.3:41464405-41464424 | MS.gene41021:intron | 35.0% | |
| TCCAATTCACATGCCAAAAT+GGG | + | chr1.3:41464856-41464875 | None:intergenic | 35.0% | |
| TCCACTTTCTGCTATTCATT+TGG | + | chr1.3:41464510-41464529 | None:intergenic | 35.0% | |
| TCTTAACAACACTCTCATCT+GGG | - | chr1.3:41467351-41467370 | MS.gene41021:CDS | 35.0% | |
| TGAAAAGGAAAGAGAAGAGA+GGG | - | chr1.3:41463516-41463535 | MS.gene41021:intron | 35.0% | |
| TGGAGTCCATAAGTTAAAAG+TGG | + | chr1.3:41466677-41466696 | None:intergenic | 35.0% | |
| TGGCATGATTCATGCATATA+AGG | - | chr1.3:41466745-41466764 | MS.gene41021:intron | 35.0% | |
| TTGAAAAGGAAAGAGAAGAG+AGG | - | chr1.3:41463515-41463534 | MS.gene41021:intron | 35.0% | |
| ! | AGCGAATTTCTTTCAAGTGT+AGG | + | chr1.3:41466255-41466274 | None:intergenic | 35.0% |
| ! | CAAAGTTGTATGAAGGTACA+TGG | + | chr1.3:41463733-41463752 | None:intergenic | 35.0% |
| ! | GTTTATGGACATGTCTGTTT+TGG | - | chr1.3:41464381-41464400 | MS.gene41021:intron | 35.0% |
| ! | TAAGAGTTAAGAAGAGGCAT+TGG | - | chr1.3:41466610-41466629 | MS.gene41021:intron | 35.0% |
| ! | TAGTTCAGCTCCATTTTAGA+CGG | + | chr1.3:41466344-41466363 | None:intergenic | 35.0% |
| ! | TCCTTGTTTACCAAAATCAC+TGG | + | chr1.3:41465672-41465691 | None:intergenic | 35.0% |
| ! | TTAACCCGTCTAAAATGAAG+CGG | - | chr1.3:41466920-41466939 | MS.gene41021:intron | 35.0% |
| !! | ACCAGTGATTTTGGTAAACA+AGG | - | chr1.3:41465668-41465687 | MS.gene41021:intron | 35.0% |
| !! | CAGAGGATATTTGTTGTCTA+AGG | + | chr1.3:41463299-41463318 | None:intergenic | 35.0% |
| !! | CATGAAATGCATCGACTTAA+AGG | + | chr1.3:41466721-41466740 | None:intergenic | 35.0% |
| !! | CATGTGGAAGGATTTTGAAA+AGG | - | chr1.3:41463501-41463520 | MS.gene41021:intron | 35.0% |
| !! | TGAAGGTACATGGAGAATTT+TGG | + | chr1.3:41463723-41463742 | None:intergenic | 35.0% |
| !! | TTGATTTGGCAGAATCAAAC+GGG | - | chr1.3:41465831-41465850 | MS.gene41021:intron | 35.0% |
| !!! | ACCCTGTTTGTGCAATTTTT+TGG | + | chr1.3:41465624-41465643 | None:intergenic | 35.0% |
| !!! | ATTTTAGACGGGTTAATGAC+GGG | + | chr1.3:41466332-41466351 | None:intergenic | 35.0% |
| !!! | CATTTTAGACGGGTTAATGA+CGG | + | chr1.3:41466333-41466352 | None:intergenic | 35.0% |
| !!! | TCGTTTTTATGTCAAGTTGG+TGG | - | chr1.3:41466401-41466420 | MS.gene41021:intron | 35.0% |
| !!! | TCTGTTTTGGTTCAATCACA+AGG | - | chr1.3:41464394-41464413 | MS.gene41021:intron | 35.0% |
| !!! | TCTTGACTAGTTTTTCCTCA+AGG | + | chr1.3:41464826-41464845 | None:intergenic | 35.0% |
| AAACAAATTGGCACACCTAG+TGG | + | chr1.3:41465648-41465667 | None:intergenic | 40.0% | |
| AACAAATTGGCACACCTAGT+GGG | + | chr1.3:41465647-41465666 | None:intergenic | 40.0% | |
| ACAAGGTAGAGCAAACATCA+TGG | - | chr1.3:41464282-41464301 | MS.gene41021:intron | 40.0% | |
| ACATTTCGATCACATGGTGA+TGG | + | chr1.3:41462909-41462928 | None:intergenic | 40.0% | |
| ACCTCAACATGAATAGGCTA+AGG | - | chr1.3:41466785-41466804 | MS.gene41021:intron | 40.0% | |
| ACTTTCAGCACATCTTGTGT+GGG | + | chr1.3:41465117-41465136 | None:intergenic | 40.0% | |
| AGCCTATTCATGTTGAGGTT+TGG | + | chr1.3:41466784-41466803 | None:intergenic | 40.0% | |
| AGCGAGTCAACTAAAGATGT+AGG | - | chr1.3:41466943-41466962 | MS.gene41021:intron | 40.0% | |
| AGGTGTTAAAGAGGAGTTGA+AGG | - | chr1.3:41462987-41463006 | MS.gene41021:intron | 40.0% | |
| CACCTTGACATAAAACGAAG+CGG | + | chr1.3:41466983-41467002 | None:intergenic | 40.0% | |
| CAGACATGTCCATAAACACT+TGG | + | chr1.3:41464378-41464397 | None:intergenic | 40.0% | |
| CATGCCTCTCTTGAATTTCT+TGG | + | chr1.3:41464315-41464334 | None:intergenic | 40.0% | |
| CCTCAACATGAATAGGCTAA+GGG | - | chr1.3:41466786-41466805 | MS.gene41021:intron | 40.0% | |
| CGAGCAAACATATAAACCAG+AGG | + | chr1.3:41467274-41467293 | None:intergenic | 40.0% | |
| CGTAGATACTATACTGTCAC+CGG | - | chr1.3:41463339-41463358 | MS.gene41021:intron | 40.0% | |
| CGTCATTAACCCGTCTAAAA+TGG | - | chr1.3:41466331-41466350 | MS.gene41021:intron | 40.0% | |
| CGTGATTGTCACAACTTACA+AGG | - | chr1.3:41466861-41466880 | MS.gene41021:intron | 40.0% | |
| CGTGCTAATTCGTATGTTAG+AGG | - | chr1.3:41464451-41464470 | MS.gene41021:intron | 40.0% | |
| CTCCAATTCACATGCCAAAA+TGG | + | chr1.3:41464857-41464876 | None:intergenic | 40.0% | |
| CTCTCACATATTGCCTAGTA+GGG | + | chr1.3:41466551-41466570 | None:intergenic | 40.0% | |
| CTCTCATCTGGGTTACTATA+TGG | - | chr1.3:41467362-41467381 | MS.gene41021:CDS | 40.0% | |
| CTCTTAACAACACTCTCATC+TGG | - | chr1.3:41467350-41467369 | MS.gene41021:CDS | 40.0% | |
| GAAACTCCCATACAAAGAAG+TGG | - | chr1.3:41465218-41465237 | MS.gene41021:intron | 40.0% | |
| GAAGAAGCTTAAGGATTCCA+TGG | - | chr1.3:41463260-41463279 | MS.gene41021:intron | 40.0% | |
| GAAGGATATTCGCTCCAAAA+TGG | - | chr1.3:41463083-41463102 | MS.gene41021:intron | 40.0% | |
| GAATTAGGACAAGCCATTTC+TGG | - | chr1.3:41465446-41465465 | MS.gene41021:intron | 40.0% | |
| GACTTAACTTTCACGTGTCT+TGG | - | chr1.3:41466121-41466140 | MS.gene41021:CDS | 40.0% | |
| GCTAATTCGTATGTTAGAGG+TGG | - | chr1.3:41464454-41464473 | MS.gene41021:intron | 40.0% | |
| GGATAATATTGAAAGCCACG+TGG | - | chr1.3:41464426-41464445 | MS.gene41021:intron | 40.0% | |
| GGTGTTTACCACTTCGTTTA+CGG | - | chr1.3:41463956-41463975 | MS.gene41021:intron | 40.0% | |
| GTGCATGAAAACCACTTTCT+AGG | + | chr1.3:41467652-41467671 | None:intergenic | 40.0% | |
| TAACCTTGAGAAACCCTACT+AGG | - | chr1.3:41466535-41466554 | MS.gene41021:intron | 40.0% | |
| TAGTTGACCATGACCATCAT+GGG | + | chr1.3:41464803-41464822 | None:intergenic | 40.0% | |
| TCTCTCACATATTGCCTAGT+AGG | + | chr1.3:41466552-41466571 | None:intergenic | 40.0% | |
| TGGTTTGAGGAAGAAGCTTA+AGG | - | chr1.3:41463251-41463270 | MS.gene41021:intron | 40.0% | |
| TGTCACCCACTTCTTTGTAT+GGG | + | chr1.3:41465227-41465246 | None:intergenic | 40.0% | |
| TGTCGTTCTTGAGCAAAAGA+TGG | + | chr1.3:41466697-41466716 | None:intergenic | 40.0% | |
| TTCTCATGTGCATCTTAGCT+AGG | + | chr1.3:41465175-41465194 | None:intergenic | 40.0% | |
| TTGATCTTGTCTCTTCAGAG+AGG | - | chr1.3:41466148-41466167 | MS.gene41021:CDS | 40.0% | |
| TTGTCACCCACTTCTTTGTA+TGG | + | chr1.3:41465228-41465247 | None:intergenic | 40.0% | |
| TTTGTCATCAGGATTCTCTC+CGG | + | chr1.3:41463361-41463380 | None:intergenic | 40.0% | |
| ! | AGGTACATGGAGAATTTTGG+AGG | + | chr1.3:41463720-41463739 | None:intergenic | 40.0% |
| ! | AGTTCAGCTCCATTTTAGAC+GGG | + | chr1.3:41466343-41466362 | None:intergenic | 40.0% |
| ! | ATCCGCTTCGTTTTATGTCA+AGG | - | chr1.3:41466978-41466997 | MS.gene41021:intron | 40.0% |
| ! | CTCTGAAGAGACAAGATCAA+GGG | + | chr1.3:41466148-41466167 | None:intergenic | 40.0% |
| ! | TCTCTGAAGAGACAAGATCA+AGG | + | chr1.3:41466149-41466168 | None:intergenic | 40.0% |
| ! | TGTTTGCTCTACCTTGTTGT+TGG | + | chr1.3:41464279-41464298 | None:intergenic | 40.0% |
| ! | TTCGTTTTATGTCAAGGTGG+TGG | - | chr1.3:41466984-41467003 | MS.gene41021:intron | 40.0% |
| !! | AGAAGTCGAAGGTGTTAAAG+AGG | - | chr1.3:41462978-41462997 | MS.gene41021:intron | 40.0% |
| !! | AGAGTGTCGATAACAGTTCT+TGG | + | chr1.3:41465570-41465589 | None:intergenic | 40.0% |
| !! | AGGCATTGGAGTGTAATTGT+TGG | - | chr1.3:41466624-41466643 | MS.gene41021:intron | 40.0% |
| !! | CAGATGAGAGTGTTGTTAAG+AGG | + | chr1.3:41467352-41467371 | None:intergenic | 40.0% |
| !! | CAGGAGTTCAATTGTTTTGC+GGG | - | chr1.3:41464951-41464970 | MS.gene41021:intron | 40.0% |
| !! | CATTTTGGCATGTGAATTGG+AGG | - | chr1.3:41464855-41464874 | MS.gene41021:intron | 40.0% |
| !! | GCAGGAGTTCAATTGTTTTG+CGG | - | chr1.3:41464950-41464969 | MS.gene41021:intron | 40.0% |
| !! | TCCCATTTTGGCATGTGAAT+TGG | - | chr1.3:41464852-41464871 | MS.gene41021:intron | 40.0% |
| !! | TGATTTCTAGAACCCCATGA+TGG | - | chr1.3:41464787-41464806 | MS.gene41021:intron | 40.0% |
| !! | TTTTAGGTCCGTAAACGAAG+TGG | + | chr1.3:41463967-41463986 | None:intergenic | 40.0% |
| !!! | AATGGGGCAGCTTTTAAGAT+TGG | - | chr1.3:41467449-41467468 | MS.gene41021:CDS | 40.0% |
| !!! | ATGGGGCAGCTTTTAAGATT+GGG | - | chr1.3:41467450-41467469 | MS.gene41021:CDS | 40.0% |
| !!! | GCAGGTTGGTCGATTTTTAT+TGG | + | chr1.3:41466893-41466912 | None:intergenic | 40.0% |
| !!! | TTTTAGACGGGTTAATGACG+GGG | + | chr1.3:41466331-41466350 | None:intergenic | 40.0% |
| AACATTGCACAACATGGCCT+AGG | + | chr1.3:41465734-41465753 | None:intergenic | 45.0% | |
| ACATACCAGTGGAAATGAGG+AGG | + | chr1.3:41463392-41463411 | None:intergenic | 45.0% | |
| ACTAGAACATCTGTGGTGAG+TGG | - | chr1.3:41463231-41463250 | MS.gene41021:intron | 45.0% | |
| AGTGGAAATGAGGAGGTCAA+CGG | + | chr1.3:41463385-41463404 | None:intergenic | 45.0% | |
| AGTTGACCATGACCATCATG+GGG | + | chr1.3:41464802-41464821 | None:intergenic | 45.0% | |
| ATACCATGCCAGAGTTGTCA+AGG | + | chr1.3:41464702-41464721 | None:intergenic | 45.0% | |
| ATCTGCATTGGGTGATCCAT+GGG | - | chr1.3:41467184-41467203 | MS.gene41021:CDS | 45.0% | |
| ATGCCAGTTTCGACGGTTAT+GGG | + | chr1.3:41465299-41465318 | None:intergenic | 45.0% | |
| ATGGCCAAGAGACATAGCTT+TGG | - | chr1.3:41467610-41467629 | MS.gene41021:CDS | 45.0% | |
| CACGCAAGAACATTCAACTC+AGG | + | chr1.3:41465381-41465400 | None:intergenic | 45.0% | |
| CACTTTCAGCACATCTTGTG+TGG | + | chr1.3:41465118-41465137 | None:intergenic | 45.0% | |
| CCCTTAGCCTATTCATGTTG+AGG | + | chr1.3:41466789-41466808 | None:intergenic | 45.0% | |
| CTATCAAGGTGATTTCCCCA+TGG | + | chr1.3:41467203-41467222 | None:intergenic | 45.0% | |
| CTTTCAGCACATCTTGTGTG+GGG | + | chr1.3:41465116-41465135 | None:intergenic | 45.0% | |
| GCCAATGTGTCAACTGCTAT+GGG | + | chr1.3:41465335-41465354 | None:intergenic | 45.0% | |
| GCGATGACATTTCGATCACA+TGG | + | chr1.3:41462915-41462934 | None:intergenic | 45.0% | |
| GGAGCTTCACCAAGTGTTTA+TGG | - | chr1.3:41464366-41464385 | MS.gene41021:intron | 45.0% | |
| GTAGTTGACCATGACCATCA+TGG | + | chr1.3:41464804-41464823 | None:intergenic | 45.0% | |
| TACTCTCATGCCAGTTTCGA+CGG | + | chr1.3:41465306-41465325 | None:intergenic | 45.0% | |
| TATCTGCATTGGGTGATCCA+TGG | - | chr1.3:41467183-41467202 | MS.gene41021:CDS | 45.0% | |
| TCACCACAGATGTTCTAGTC+CGG | + | chr1.3:41463230-41463249 | None:intergenic | 45.0% | |
| TCCAACAGTTGCATGTTGCT+AGG | - | chr1.3:41464479-41464498 | MS.gene41021:intron | 45.0% | |
| TCCCATAGCAGTTGACACAT+TGG | - | chr1.3:41465331-41465350 | MS.gene41021:intron | 45.0% | |
| TCCTAGCAACATGCAACTGT+TGG | + | chr1.3:41464483-41464502 | None:intergenic | 45.0% | |
| TCTTAAAAGCTGCCCCATTC+AGG | + | chr1.3:41467448-41467467 | None:intergenic | 45.0% | |
| TGGCCAAGAGACATAGCTTT+GGG | - | chr1.3:41467611-41467630 | MS.gene41021:CDS | 45.0% | |
| TTGCCTAGTAGGGTTTCTCA+AGG | + | chr1.3:41466541-41466560 | None:intergenic | 45.0% | |
| TTTCTCCCACAACTCTTGGT+GGG | + | chr1.3:41467562-41467581 | None:intergenic | 45.0% | |
| ! | AGGACAAGCCATTTCTGGAA+GGG | - | chr1.3:41465451-41465470 | MS.gene41021:intron | 45.0% |
| ! | CAAACTCCTACTAGCCTCAT+TGG | + | chr1.3:41463178-41463197 | None:intergenic | 45.0% |
| ! | CGCTTCGTTTTATGTCAAGG+TGG | - | chr1.3:41466981-41467000 | MS.gene41021:intron | 45.0% |
| ! | CTGAGTTGAATGTTCTTGCG+TGG | - | chr1.3:41465379-41465398 | MS.gene41021:intron | 45.0% |
| ! | GGTGGCTATGACTAGTTCAA+AGG | - | chr1.3:41464643-41464662 | MS.gene41021:intron | 45.0% |
| ! | TAGGACAAGCCATTTCTGGA+AGG | - | chr1.3:41465450-41465469 | MS.gene41021:intron | 45.0% |
| ! | TCGCTCCGCTTCATTTTAGA+CGG | + | chr1.3:41466928-41466947 | None:intergenic | 45.0% |
| ! | TCTGGAATGATCATTCTCGG+CGG | + | chr1.3:41467537-41467556 | None:intergenic | 45.0% |
| ! | TGGTAATGCCCTTCCAGAAA+TGG | + | chr1.3:41465462-41465481 | None:intergenic | 45.0% |
| !! | AAGATGAACACCGGTTTGTG+CGG | + | chr1.3:41462944-41462963 | None:intergenic | 45.0% |
| !! | AGGTCAACGGTTTTGTCATC+AGG | + | chr1.3:41463372-41463391 | None:intergenic | 45.0% |
| !! | ATCACATGGTGATGGTTGTC+CGG | + | chr1.3:41462901-41462920 | None:intergenic | 45.0% |
| !! | GCCTCTGGAATGATCATTCT+CGG | + | chr1.3:41467540-41467559 | None:intergenic | 45.0% |
| !! | ATATTATAATATTATAATCT+TGG | - | chr1.3:41464622-41464641 | MS.gene41021:intron | 5.0% |
| !!! | ATAAATATTTTTTCATATAT+TGG | - | chr1.3:41464725-41464744 | MS.gene41021:intron | 5.0% |
| AACTCAGGCGCCAATTTCGA+CGG | + | chr1.3:41465366-41465385 | None:intergenic | 50.0% | |
| AAGGGTCTTGCTCCTCTCAT+GGG | + | chr1.3:41463046-41463065 | None:intergenic | 50.0% | |
| AGGTTCAGTGGTGACCGTAA+TGG | - | chr1.3:41467584-41467603 | MS.gene41021:CDS | 50.0% | |
| CAACTCGGATCAAGTTTCGC+CGG | - | chr1.3:41462879-41462898 | MS.gene41021:CDS | 50.0% | |
| CAAGAGTTGTGGGAGAAAGG+AGG | - | chr1.3:41467564-41467583 | MS.gene41021:CDS | 50.0% | |
| CACCAAGAGTTGTGGGAGAA+AGG | - | chr1.3:41467561-41467580 | MS.gene41021:CDS | 50.0% | |
| CACTTTCTAGGTCTACCACC+AGG | + | chr1.3:41467640-41467659 | None:intergenic | 50.0% | |
| CATCTGTGGTGAGTGGTTTG+AGG | - | chr1.3:41463238-41463257 | MS.gene41021:intron | 50.0% | |
| CATGCCAGTTTCGACGGTTA+TGG | + | chr1.3:41465300-41465319 | None:intergenic | 50.0% | |
| CGCCAATGTGTCAACTGCTA+TGG | + | chr1.3:41465336-41465355 | None:intergenic | 50.0% | |
| CTAGAACCCCATGATGGTCA+TGG | - | chr1.3:41464793-41464812 | MS.gene41021:intron | 50.0% | |
| CTCCAAAATGGATGCTGACG+TGG | - | chr1.3:41463095-41463114 | MS.gene41021:intron | 50.0% | |
| CTCCTTTCTCCCACAACTCT+TGG | + | chr1.3:41467566-41467585 | None:intergenic | 50.0% | |
| CTGGTGGTAGACCTAGAAAG+TGG | - | chr1.3:41467638-41467657 | MS.gene41021:CDS | 50.0% | |
| CTTTCTCCCACAACTCTTGG+TGG | + | chr1.3:41467563-41467582 | None:intergenic | 50.0% | |
| GCCGAGAATGATCATTCCAG+AGG | - | chr1.3:41467536-41467555 | MS.gene41021:CDS | 50.0% | |
| GCGAAACTTGATCCGAGTTG+CGG | + | chr1.3:41462879-41462898 | None:intergenic | 50.0% | |
| GGCATGTGAATTGGAGGAGA+AGG | - | chr1.3:41464861-41464880 | MS.gene41021:intron | 50.0% | |
| GGTCATGGTCAACTACCTTG+AGG | - | chr1.3:41464808-41464827 | MS.gene41021:intron | 50.0% | |
| GTTGACCTCCTCATTTCCAC+TGG | - | chr1.3:41463384-41463403 | MS.gene41021:intron | 50.0% | |
| GTTGTGGCTTCCATAGTTGC+TGG | - | chr1.3:41467479-41467498 | MS.gene41021:CDS | 50.0% | |
| TACCCCATAACCGTCGAAAC+TGG | - | chr1.3:41465293-41465312 | MS.gene41021:intron | 50.0% | |
| TATTCTCCGGCTCTTTCTCC+CGG | - | chr1.3:41462851-41462870 | MS.gene41021:CDS | 50.0% | |
| TCATGCTGCCTTGACAACTC+TGG | - | chr1.3:41464691-41464710 | MS.gene41021:intron | 50.0% | |
| TCCCCCAAAGCTATGTCTCT+TGG | + | chr1.3:41467617-41467636 | None:intergenic | 50.0% | |
| TCCTCTCATGGGAGACTCTA+AGG | + | chr1.3:41463035-41463054 | None:intergenic | 50.0% | |
| TCTGCATTGGGTGATCCATG+GGG | - | chr1.3:41467185-41467204 | MS.gene41021:CDS | 50.0% | |
| TGCCAGTTTCGACGGTTATG+GGG | + | chr1.3:41465298-41465317 | None:intergenic | 50.0% | |
| TGTGTGGGGTGAATCACTCT+TGG | + | chr1.3:41465102-41465121 | None:intergenic | 50.0% | |
| TTCAGTGGTGACCGTAATGG+CGG | - | chr1.3:41467587-41467606 | MS.gene41021:CDS | 50.0% | |
| ! | ACTTGTTAAACTCCGGCTCG+AGG | - | chr1.3:41463140-41463159 | MS.gene41021:intron | 50.0% |
| ! | AGCCACGTCAGCATCCATTT+TGG | + | chr1.3:41463100-41463119 | None:intergenic | 50.0% |
| ! | CGCTCCGCTTCATTTTAGAC+GGG | + | chr1.3:41466927-41466946 | None:intergenic | 50.0% |
| ! | GGCCAAGAGACATAGCTTTG+GGG | - | chr1.3:41467612-41467631 | MS.gene41021:CDS | 50.0% |
| ! | TCCTACTAGCCTCATTGGAC+CGG | + | chr1.3:41463173-41463192 | None:intergenic | 50.0% |
| ! | TGTTTCTACTTGCCGTCCTC+TGG | - | chr1.3:41467255-41467274 | MS.gene41021:CDS | 50.0% |
| !! | GCCAAGAGACATAGCTTTGG+GGG | - | chr1.3:41467613-41467632 | MS.gene41021:CDS | 50.0% |
| AAGCTGCCCCATTCAGGAGT+AGG | + | chr1.3:41467442-41467461 | None:intergenic | 55.0% | |
| ACCCCACCTACTCCTGAATG+GGG | - | chr1.3:41467433-41467452 | MS.gene41021:CDS | 55.0% | |
| ACCGGTCCAATGAGGCTAGT+AGG | - | chr1.3:41463169-41463188 | MS.gene41021:intron | 55.0% | |
| ACGAATTAGCACGTGCCACG+TGG | + | chr1.3:41464444-41464463 | None:intergenic | 55.0% | |
| AGAGGCCCACCAAGAGTTGT+GGG | - | chr1.3:41467554-41467573 | MS.gene41021:CDS | 55.0% | |
| AGATGTTCTAGTCCGGTCCG+AGG | + | chr1.3:41463223-41463242 | None:intergenic | 55.0% | |
| AGTAGGAGTTTGCCTGGTGC+TGG | - | chr1.3:41463186-41463205 | MS.gene41021:intron | 55.0% | |
| CACAGCTTTCGCGCTGTGAA+GGG | + | chr1.3:41463064-41463083 | None:intergenic | 55.0% | |
| CTCTTGGCCATCCGCCATTA+CGG | + | chr1.3:41467601-41467620 | None:intergenic | 55.0% | |
| CTGCCTTGACAACTCTGGCA+TGG | - | chr1.3:41464696-41464715 | MS.gene41021:intron | 55.0% | |
| CTTGATCCGAGTTGCGGAAC+CGG | + | chr1.3:41462873-41462892 | None:intergenic | 55.0% | |
| GAAGGGTCTTGCTCCTCTCA+TGG | + | chr1.3:41463047-41463066 | None:intergenic | 55.0% | |
| GACCCCACCTACTCCTGAAT+GGG | - | chr1.3:41467432-41467451 | MS.gene41021:CDS | 55.0% | |
| GAGGCTAGTAGGAGTTTGCC+TGG | - | chr1.3:41463180-41463199 | MS.gene41021:intron | 55.0% | |
| GCCTTAGAGTCTCCCATGAG+AGG | - | chr1.3:41463031-41463050 | MS.gene41021:intron | 55.0% | |
| GCGCCAATTTCGACGGTTAG+TGG | + | chr1.3:41465359-41465378 | None:intergenic | 55.0% | |
| GCGCCACTAACCGTCGAAAT+TGG | - | chr1.3:41465353-41465372 | MS.gene41021:intron | 55.0% | |
| GTGGGAGAAAGGAGGTTCAG+TGG | - | chr1.3:41467572-41467591 | MS.gene41021:CDS | 55.0% | |
| TCACAGCGCGAAAGCTGTGA+AGG | - | chr1.3:41463065-41463084 | MS.gene41021:intron | 55.0% | |
| TCACAGCTTTCGCGCTGTGA+AGG | + | chr1.3:41463065-41463084 | None:intergenic | 55.0% | |
| TGCACAAACAGGGTCCCACT+AGG | - | chr1.3:41465630-41465649 | MS.gene41021:intron | 55.0% | |
| TGCCCCATTCAGGAGTAGGT+GGG | + | chr1.3:41467438-41467457 | None:intergenic | 55.0% | |
| TTGATCCGAGTTGCGGAACC+GGG | + | chr1.3:41462872-41462891 | None:intergenic | 55.0% | |
| TTTCTCCCGGTTCCGCAACT+CGG | - | chr1.3:41462864-41462883 | MS.gene41021:CDS | 55.0% | |
| ! | GGACCGGACTAGAACATCTG+TGG | - | chr1.3:41463224-41463243 | MS.gene41021:intron | 55.0% |
| !! | ACACCGGTTTGTGCGGTGTT+CGG | + | chr1.3:41462937-41462956 | None:intergenic | 55.0% |
| !! | AGACATAGCTTTGGGGGACC+TGG | - | chr1.3:41467619-41467638 | MS.gene41021:CDS | 55.0% |
| CAGAGGCCCACCAAGAGTTG+TGG | - | chr1.3:41467553-41467572 | MS.gene41021:CDS | 60.0% | |
| CTGCCCCATTCAGGAGTAGG+TGG | + | chr1.3:41467439-41467458 | None:intergenic | 60.0% | |
| GCCCCATTCAGGAGTAGGTG+GGG | + | chr1.3:41467437-41467456 | None:intergenic | 60.0% | |
| GGACCCCACCTACTCCTGAA+TGG | - | chr1.3:41467431-41467450 | MS.gene41021:CDS | 60.0% | |
| GGCACTTGACCGGTCCAATG+AGG | - | chr1.3:41463161-41463180 | MS.gene41021:intron | 60.0% | |
| TCGCCGAACACCGCACAAAC+CGG | - | chr1.3:41462931-41462950 | MS.gene41021:CDS | 60.0% | |
| ! | AGTTTGCCTGGTGCTGGACC+GGG | - | chr1.3:41463192-41463211 | MS.gene41021:intron | 60.0% |
| ! | CACAACTCTTGGTGGGCCTC+TGG | + | chr1.3:41467555-41467574 | None:intergenic | 60.0% |
| ! | GAGTTTGCCTGGTGCTGGAC+CGG | - | chr1.3:41463191-41463210 | MS.gene41021:intron | 60.0% |
| ! | GGGTTAATGACGGGGCAGGT+TGG | + | chr1.3:41466907-41466926 | None:intergenic | 60.0% |
| ! | GTGGTGACCGTAATGGCGGA+TGG | - | chr1.3:41467591-41467610 | MS.gene41021:CDS | 60.0% |
| !! | AGACGGGTTAATGACGGGGC+AGG | + | chr1.3:41466911-41466930 | None:intergenic | 60.0% |
| !! | CATAGCTTTGGGGGACCTGG+TGG | - | chr1.3:41467622-41467641 | MS.gene41021:CDS | 60.0% |
| ACCGGTCAAGTGCCTCGAGC+CGG | + | chr1.3:41463155-41463174 | None:intergenic | 65.0% | |
| GCGGAACCGGGAGAAAGAGC+CGG | + | chr1.3:41462860-41462879 | None:intergenic | 65.0% | |
| TGCTGGACCGGGTTCGTCCT+CGG | - | chr1.3:41463203-41463222 | MS.gene41021:intron | 65.0% | |
| ! | TCCGGCTCGAGGCACTTGAC+CGG | - | chr1.3:41463151-41463170 | MS.gene41021:intron | 65.0% |
| GACCGGGTTCGTCCTCGGAC+CGG | - | chr1.3:41463208-41463227 | MS.gene41021:intron | 70.0% | |
| GACGAACCCGGTCCAGCACC+AGG | + | chr1.3:41463201-41463220 | None:intergenic | 70.0% | |
| GTCCGGTCCGAGGACGAACC+CGG | + | chr1.3:41463213-41463232 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 41462841 | 41467676 | 41462841 | ID=MS.gene41021 |
| chr1.3 | mRNA | 41462841 | 41467676 | 41462841 | ID=MS.gene41021.t1;Parent=MS.gene41021 |
| chr1.3 | exon | 41467112 | 41467676 | 41467112 | ID=MS.gene41021.t1.exon1;Parent=MS.gene41021.t1 |
| chr1.3 | CDS | 41467112 | 41467676 | 41467112 | ID=cds.MS.gene41021.t1;Parent=MS.gene41021.t1 |
| chr1.3 | exon | 41466056 | 41466272 | 41466056 | ID=MS.gene41021.t1.exon2;Parent=MS.gene41021.t1 |
| chr1.3 | CDS | 41466056 | 41466272 | 41466056 | ID=cds.MS.gene41021.t1;Parent=MS.gene41021.t1 |
| chr1.3 | exon | 41462841 | 41462991 | 41462841 | ID=MS.gene41021.t1.exon3;Parent=MS.gene41021.t1 |
| chr1.3 | CDS | 41462841 | 41462991 | 41462841 | ID=cds.MS.gene41021.t1;Parent=MS.gene41021.t1 |
| Gene Sequence |
| Protein sequence |
