AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene059697


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059697.t1 MTR_8g091390 98.614 577 7 1 1 576 1 577 0.0 1181
MS.gene059697.t1 MTR_3g078740 48.342 573 262 9 31 573 23 591 0.0 556
MS.gene059697.t1 MTR_3g078730 49.206 567 253 8 13 573 5 542 0.0 555
MS.gene059697.t1 MTR_3g078700 47.887 568 262 6 6 569 1 538 0.0 547
MS.gene059697.t1 MTR_5g020600 34.542 579 322 20 1 552 1 549 2.73e-87 281
MS.gene059697.t1 MTR_5g020620 33.451 565 326 14 7 549 3 539 1.40e-84 274
MS.gene059697.t1 MTR_5g069680 33.333 564 315 18 13 549 7 536 3.09e-78 257
MS.gene059697.t1 MTR_7g458880 31.641 591 329 21 14 561 9 567 4.36e-78 258
MS.gene059697.t1 MTR_5g081810 33.973 521 297 15 49 549 14 507 9.45e-78 255
MS.gene059697.t1 MTR_5g083360 31.980 591 333 20 15 566 7 567 6.32e-77 254
MS.gene059697.t1 MTR_7g058690 32.143 588 330 22 14 561 9 567 7.63e-77 254
MS.gene059697.t1 MTR_3g462760 32.965 543 311 16 30 549 22 534 1.35e-76 253
MS.gene059697.t1 MTR_7g060460 31.940 598 339 21 4 562 1 569 5.60e-76 252
MS.gene059697.t1 MTR_7g062250 32.810 573 317 21 34 566 34 578 1.27e-74 248
MS.gene059697.t1 MTR_2g008330 32.069 580 332 17 3 549 7 557 8.18e-74 246
MS.gene059697.t1 MTR_8g027375 31.760 551 329 15 22 549 23 549 1.01e-71 240
MS.gene059697.t1 MTR_7g062310 30.995 613 335 23 2 560 6 584 2.83e-71 240
MS.gene059697.t1 MTR_5g073210 31.624 585 324 20 17 563 5 551 9.48e-71 238
MS.gene059697.t1 MTR_3g101640 32.049 571 320 22 15 549 11 549 6.59e-69 233
MS.gene059697.t1 MTR_4g064530 31.000 600 340 23 1 560 6 571 5.14e-68 231
MS.gene059697.t1 MTR_7g065980 29.592 588 339 18 18 565 10 562 4.05e-66 226
MS.gene059697.t1 MTR_3g101635 32.035 565 315 21 21 549 13 544 8.88e-66 224
MS.gene059697.t1 MTR_3g071890 32.083 533 292 20 49 546 48 545 1.76e-65 224
MS.gene059697.t1 MTR_7g065970 30.000 580 329 21 15 550 3 549 7.72e-65 222
MS.gene059697.t1 MTR_4g019225 31.308 543 300 20 49 550 41 551 3.17e-63 218
MS.gene059697.t1 MTR_4g064530 30.435 575 329 22 1 535 6 549 1.01e-60 211
MS.gene059697.t1 MTR_8g479390 28.998 569 324 20 28 571 25 538 6.89e-57 200
MS.gene059697.t1 MTR_5g018270 28.622 566 327 18 28 571 25 535 2.91e-53 190
MS.gene059697.t1 MTR_4g132320 27.844 589 334 19 14 571 11 539 2.70e-52 187
MS.gene059697.t1 MTR_4g049390 28.147 572 324 16 29 571 22 535 6.42e-52 186
MS.gene059697.t1 MTR_4g048350 27.915 566 332 15 29 571 22 534 7.05e-52 186
MS.gene059697.t1 MTR_4g101650 29.813 587 350 18 8 568 1 551 7.23e-52 187
MS.gene059697.t1 MTR_3g008580 27.444 583 359 17 17 570 8 555 2.97e-51 186
MS.gene059697.t1 MTR_3g083440 28.253 584 350 18 9 570 3 539 1.13e-50 183
MS.gene059697.t1 MTR_1g026410 27.136 597 338 19 11 571 2 537 1.35e-50 183
MS.gene059697.t1 MTR_3g083400 28.253 584 350 18 9 570 3 539 3.04e-50 182
MS.gene059697.t1 MTR_3g083390 28.253 584 350 18 9 570 3 539 4.55e-50 181
MS.gene059697.t1 MTR_3g115050 25.758 594 348 18 10 571 6 538 5.31e-50 181
MS.gene059697.t1 MTR_3g083450 28.495 558 333 17 35 570 27 540 2.31e-49 179
MS.gene059697.t1 MTR_3g083430 28.082 584 351 18 9 570 3 539 2.56e-49 179
MS.gene059697.t1 MTR_2g088080 26.678 596 347 15 8 571 1 538 3.80e-49 179
MS.gene059697.t1 MTR_4g075690 26.207 580 351 16 14 571 13 537 4.38e-48 176
MS.gene059697.t1 MTR_1g090707 28.015 539 324 19 52 568 42 538 5.95e-48 176
MS.gene059697.t1 MTR_4g083210 28.302 583 347 19 9 570 3 535 9.30e-48 175
MS.gene059697.t1 MTR_7g051440 29.264 557 333 18 35 567 30 549 1.57e-47 175
MS.gene059697.t1 MTR_8g479380 26.804 582 341 19 15 570 13 535 3.24e-47 173
MS.gene059697.t1 MTR_3g083410 28.067 538 321 17 55 570 10 503 2.14e-46 171
MS.gene059697.t1 MTR_4g083190 26.003 573 370 14 14 570 7 541 4.24e-45 168
MS.gene059697.t1 MTR_4g075690 25.971 489 291 13 14 485 13 447 1.36e-38 147
MS.gene059697.t1 MTR_2g088080 25.486 514 297 13 87 571 1 457 4.11e-37 144
MS.gene059697.t1 MTR_4g015120 41.615 161 90 2 389 549 379 535 3.53e-32 131
MS.gene059697.t1 MTR_3g079660 50.000 96 47 1 481 575 5 100 3.70e-30 114
MS.gene059697.t1 MTR_5g081790 40.385 156 84 3 389 541 283 432 3.95e-26 111
MS.gene059697.t1 MTR_5g081790 37.952 166 89 6 16 169 5 168 7.44e-22 99.0
MS.gene059697.t1 MTR_2g009230 44.262 61 32 1 139 197 1 61 5.07e-12 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059697.t1 AT4G39830 66.431 566 181 4 14 570 16 581 0.0 823
MS.gene059697.t1 AT4G39830 67.769 484 147 4 96 570 3 486 0.0 707
MS.gene059697.t1 AT4G39830 67.702 483 147 4 97 570 2 484 0.0 706
MS.gene059697.t1 AT4G39830 65.496 484 145 5 96 570 3 473 0.0 671
MS.gene059697.t1 AT5G21105 49.733 561 273 4 20 573 24 582 0.0 573
MS.gene059697.t1 AT5G21100 48.649 555 275 6 26 573 16 567 0.0 555
MS.gene059697.t1 AT5G21105 48.084 522 262 4 15 529 19 538 5.03e-175 506
MS.gene059697.t1 AT5G21105 48.429 382 190 3 197 573 12 391 1.02e-122 367
MS.gene059697.t1 AT5G03260 34.353 556 319 15 14 549 6 535 6.33e-87 280
MS.gene059697.t1 AT5G58910 33.157 567 325 17 12 549 4 545 7.62e-84 272
MS.gene059697.t1 AT5G58910 33.157 567 324 18 12 549 4 544 1.38e-82 269
MS.gene059697.t1 AT2G38080 33.635 553 326 15 17 549 5 536 9.94e-80 261
MS.gene059697.t1 AT1G18140 31.966 585 316 20 27 564 22 571 7.04e-78 257
MS.gene059697.t1 AT5G05390 31.858 565 324 19 16 549 9 543 1.10e-77 256
MS.gene059697.t1 AT5G01050 30.862 580 331 21 20 561 13 560 2.32e-74 248
MS.gene059697.t1 AT5G60020 31.834 578 323 20 11 545 2 551 5.99e-74 246
MS.gene059697.t1 AT5G09360 33.507 576 316 23 19 564 21 559 6.83e-74 246
MS.gene059697.t1 AT2G29130 31.570 567 325 19 14 545 9 547 2.22e-73 245
MS.gene059697.t1 AT5G58910 33.080 526 295 17 49 549 8 501 7.39e-73 242
MS.gene059697.t1 AT2G46570 30.756 569 330 17 13 549 11 547 1.52e-72 243
MS.gene059697.t1 AT5G48100 32.646 582 320 26 16 561 5 550 8.56e-71 238
MS.gene059697.t1 AT5G01190 32.264 561 326 15 14 549 5 536 1.01e-69 235
MS.gene059697.t1 AT5G60020 32.037 540 296 20 49 545 8 519 9.20e-69 232
MS.gene059697.t1 AT5G01040 30.756 582 327 24 20 561 13 558 6.42e-68 231
MS.gene059697.t1 AT3G09220 30.373 563 334 19 18 549 10 545 5.97e-67 228
MS.gene059697.t1 AT5G60020 31.317 562 315 20 11 529 2 535 1.32e-66 226
MS.gene059697.t1 AT5G07130 29.730 592 343 20 19 566 7 569 4.46e-66 225
MS.gene059697.t1 AT5G01190 33.205 521 294 15 54 549 31 522 5.50e-66 224
MS.gene059697.t1 AT2G30210 31.716 536 301 19 49 549 43 548 4.63e-65 223
MS.gene059697.t1 AT2G40370 30.000 580 333 20 14 549 8 558 9.22e-64 219
MS.gene059697.t1 AT1G75790 29.302 587 335 21 15 570 8 545 3.07e-58 204
MS.gene059697.t1 AT4G12420 31.159 552 324 19 13 544 5 520 9.07e-58 203
MS.gene059697.t1 AT4G12420 31.159 552 324 19 13 544 5 520 9.07e-58 203
MS.gene059697.t1 AT5G66920 27.482 564 338 15 28 571 31 543 4.07e-56 198
MS.gene059697.t1 AT2G23630 29.110 584 320 21 18 570 21 541 4.21e-55 195
MS.gene059697.t1 AT2G23630 29.110 584 320 21 18 570 16 536 6.05e-55 195
MS.gene059697.t1 AT4G22010 27.979 579 341 17 17 571 9 535 7.73e-55 194
MS.gene059697.t1 AT2G46570 29.796 490 281 16 92 549 4 462 9.32e-54 190
MS.gene059697.t1 AT1G21850 28.007 582 338 20 14 571 11 535 4.42e-53 190
MS.gene059697.t1 AT1G55570 27.863 585 361 15 8 571 1 545 3.02e-52 187
MS.gene059697.t1 AT4G37160 27.692 585 340 19 13 570 10 538 6.23e-51 184
MS.gene059697.t1 AT1G76160 26.884 584 341 19 15 571 11 535 1.38e-50 183
MS.gene059697.t1 AT1G21860 27.190 548 325 16 16 544 11 503 2.20e-49 179
MS.gene059697.t1 AT5G07130 28.880 509 292 18 100 566 4 484 6.64e-49 177
MS.gene059697.t1 AT5G07130 28.880 509 292 18 100 566 4 484 6.64e-49 177
MS.gene059697.t1 AT3G09220 29.810 473 275 18 108 549 2 448 1.06e-47 173
MS.gene059697.t1 AT4G28090 27.469 557 302 20 23 544 18 507 3.14e-47 174
MS.gene059697.t1 AT3G13390 27.046 562 339 16 35 571 29 544 6.17e-46 170
MS.gene059697.t1 AT1G41830 25.000 584 353 17 14 571 12 536 8.52e-46 169
MS.gene059697.t1 AT5G48450 27.076 554 347 14 8 544 1 514 1.37e-45 170
MS.gene059697.t1 AT5G48450 27.076 554 347 14 8 544 1 514 3.16e-45 169
MS.gene059697.t1 AT4G25240 28.376 585 349 20 15 570 11 554 6.09e-45 168
MS.gene059697.t1 AT4G25240 28.376 585 349 20 15 570 11 554 6.09e-45 168
MS.gene059697.t1 AT5G51480 27.321 560 341 17 36 567 30 551 1.56e-44 167
MS.gene059697.t1 AT3G13400 26.306 555 353 14 35 572 28 543 6.65e-44 164
MS.gene059697.t1 AT3G13400 26.306 555 353 14 35 572 28 543 6.65e-44 164
MS.gene059697.t1 AT4G38420 24.957 581 359 18 16 569 12 542 7.46e-39 150
MS.gene059697.t1 AT1G55560 26.834 559 343 17 36 572 28 542 2.46e-37 146
MS.gene059697.t1 AT4G37160 27.273 495 283 17 13 485 10 449 1.65e-35 139
MS.gene059697.t1 AT4G38420 25.336 521 317 17 16 514 12 482 4.73e-33 133
MS.gene059697.t1 AT4G38420 25.407 492 296 16 16 485 12 454 1.52e-30 125

Find 135 sgRNAs with CRISPR-Local

Find 225 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTATGTTTCTTTCTAATTC+TGG 0.152360 4.3:-9791293 MS.gene059697:CDS
AAACTTGTTATAACCATTAA+TGG 0.170163 4.3:-9791187 MS.gene059697:CDS
TCCTGGAGTCTTTCCATTAA+TGG 0.173819 4.3:+9791174 None:intergenic
TGAAATTGCTTGTTTAATTA+TGG 0.174792 4.3:+9788471 None:intergenic
AATGAATGATTACCTCTATT+TGG 0.179597 4.3:+9790068 None:intergenic
AAACATAGAAACAATAATTT+TGG 0.223988 4.3:+9791307 None:intergenic
GATCGGATAATCCTGGTGTT+TGG 0.257745 4.3:-9788622 MS.gene059697:CDS
CCTCAGTCACTTCTGATTCA+TGG 0.264081 4.3:-9790247 MS.gene059697:intron
CTTCTAGCAATGGAATTTAT+AGG 0.273291 4.3:-9788874 MS.gene059697:CDS
GGCACAGTATTCTTCATAAT+GGG 0.282501 4.3:+9788680 None:intergenic
GGCGACCTCATTGGATGGTT+TGG 0.294439 4.3:+9789220 None:intergenic
CAAAGGGAAGCAGGAGTATA+TGG 0.305522 4.3:-9790535 MS.gene059697:CDS
GAGGTTTGATTGTGTAATTT+TGG 0.312038 4.3:+9789119 None:intergenic
ACAAGTTTCTTATAACAATC+AGG 0.314861 4.3:+9791202 None:intergenic
CTGGTGTTAGACATTATAAA+TGG 0.319055 4.3:-9791249 MS.gene059697:CDS
TATAGAGTCTCATTTCTATA+TGG 0.319868 4.3:-9788585 MS.gene059697:CDS
ATCGGATAATCCTGGTGTTT+GGG 0.329948 4.3:-9788621 MS.gene059697:CDS
CATTTGGTTGGACTGCTTTG+AGG 0.330733 4.3:-9788649 MS.gene059697:CDS
CTATCAAAGTCATAAGAAAA+AGG 0.331498 4.3:+9790481 None:intergenic
ATTGGAACTCCTTGGTTTGA+TGG 0.340104 4.3:-9790929 MS.gene059697:CDS
TGCGAAAAGGGAGAGCATTC+AGG 0.359438 4.3:+9790160 None:intergenic
GCGACCTCATTGGATGGTTT+GGG 0.364061 4.3:+9789221 None:intergenic
GGCAAAAGCAAAGGCTTCTT+AGG 0.366890 4.3:-9788494 MS.gene059697:CDS
TGGCACAGTATTCTTCATAA+TGG 0.366973 4.3:+9788679 None:intergenic
TTTATCGATTTGTTGTTGAT+AGG 0.375099 4.3:-9790859 MS.gene059697:CDS
AGCCATCAGGTGGAGGTGTT+TGG 0.375855 4.3:+9788948 None:intergenic
CTTTAAGTGCAACAAGATAA+GGG 0.376250 4.3:+9788993 None:intergenic
TACCTTTATCATGCTCACTA+TGG 0.386828 4.3:-9790562 MS.gene059697:CDS
GTGATCCAGTAGTTTCTTGA+TGG 0.389887 4.3:+9789304 None:intergenic
TTCCATAGTGAGCATGATAA+AGG 0.395211 4.3:+9790560 None:intergenic
TTAGCACCAAGCTTACTTGC+TGG 0.401503 4.3:-9790202 MS.gene059697:CDS
GGGAGGTGAAGTATGATTAT+AGG 0.405545 4.3:-9791228 MS.gene059697:CDS
TCTTTAAGTGCAACAAGATA+AGG 0.407309 4.3:+9788992 None:intergenic
GCACTTAAAGAGAATATAAC+TGG 0.408038 4.3:-9788980 MS.gene059697:CDS
ATTGTTCATAAGTACTCTTA+TGG 0.412906 4.3:+9790434 None:intergenic
AGCACTTAGTTTCCAAATAG+AGG 0.414638 4.3:-9790080 MS.gene059697:intron
AAGAAGGAATTGAAAGGGTT+GGG 0.416848 4.3:-9788544 MS.gene059697:CDS
GGTGGAGATGGTGGAGATGT+TGG 0.421057 4.3:+9789196 None:intergenic
GAGACGACTGTTTGCGAAAA+GGG 0.423092 4.3:+9790148 None:intergenic
GTTTCTGCTGACAACATTTG+AGG 0.423513 4.3:+9789282 None:intergenic
TAACACCAGCCTCAGCTTTG+TGG 0.425338 4.3:+9791263 None:intergenic
CTTCAACAACAGTCATGTTA+TGG 0.433837 4.3:+9789419 None:intergenic
ACACATCCATGGCATCTTCA+TGG 0.435000 4.3:-9788782 MS.gene059697:CDS
CAAATGTTGTCAGCAGAAAC+AGG 0.442581 4.3:-9789279 MS.gene059697:CDS
TCCACCATCTCCACCAGCTT+GGG 0.443905 4.3:-9789188 MS.gene059697:CDS
ATAGAGTCTCATTTCTATAT+GGG 0.445190 4.3:-9788584 MS.gene059697:CDS
TAGAGATTCTTAACCACAAA+AGG 0.447645 4.3:+9789376 None:intergenic
ACTCTATCTGAGGTTGTTGG+AGG 0.454902 4.3:+9789100 None:intergenic
ATCACCCTCTTGTGCTTGAA+TGG 0.456594 4.3:+9791147 None:intergenic
CCCTCTTGTGCTTGAATGGT+AGG 0.459507 4.3:+9791151 None:intergenic
CTATAGACGGTGTTCGTCAT+TGG 0.461142 4.3:-9789051 MS.gene059697:CDS
TTATCGATTTGTTGTTGATA+GGG 0.462550 4.3:-9790858 MS.gene059697:intron
CTCCACCATCTCCACCAGCT+TGG 0.463071 4.3:-9789189 MS.gene059697:CDS
AGGACAACCCCGCCTGGTTT+AGG 0.465849 4.3:-9789259 MS.gene059697:CDS
GAAGCTACCTTCATCCATCA+TGG 0.470885 4.3:-9788522 MS.gene059697:CDS
TTTCTATATGGGAATGGGAG+TGG 0.472301 4.3:-9788573 MS.gene059697:CDS
TGGGTACTTGGATATGGAAA+GGG 0.475912 4.3:-9788749 MS.gene059697:CDS
TCACTTCTGATTCATGGAAA+AGG 0.477199 4.3:-9790241 MS.gene059697:CDS
GAAGAAGGAATTGAAAGGGT+TGG 0.486528 4.3:-9788545 MS.gene059697:CDS
TCTCATTTCTATATGGGAAT+GGG 0.493176 4.3:-9788578 MS.gene059697:CDS
AGGTTTCGATCGGATAATCC+TGG 0.493226 4.3:-9788629 MS.gene059697:CDS
GTCTCATTTCTATATGGGAA+TGG 0.494997 4.3:-9788579 MS.gene059697:CDS
TGAGACGACTGTTTGCGAAA+AGG 0.496730 4.3:+9790147 None:intergenic
GACTGCTTTGAGGTTTCGAT+CGG 0.497349 4.3:-9788639 MS.gene059697:CDS
TATGGAATGCAAAGGGAAGC+AGG 0.500152 4.3:-9790544 MS.gene059697:CDS
ATGACTCTATCTGAGGTTGT+TGG 0.501248 4.3:+9789097 None:intergenic
TGCCAGTGCACTCATTTGGT+TGG 0.501895 4.3:-9788661 MS.gene059697:CDS
TTCAACTTCAACTAAGCCTA+AGG 0.502063 4.3:-9791336 MS.gene059697:CDS
AGTACTTATGAACAATCTGC+TGG 0.505703 4.3:-9790427 MS.gene059697:CDS
TTTGGTGAGCTTTGATTGCA+AGG 0.510484 4.3:+9789137 None:intergenic
TGTGCTTGAATGGTAGGTCC+TGG 0.510931 4.3:+9791157 None:intergenic
CCATTGGCATGGTATTAGAC+AGG 0.511230 4.3:-9791074 MS.gene059697:intron
TTGGGTACTTGGATATGGAA+AGG 0.514165 4.3:-9788750 MS.gene059697:CDS
CAAGTTTCTTATAACAATCA+GGG 0.515748 4.3:+9791203 None:intergenic
GACTCAACATTGTCCCAAGC+TGG 0.516390 4.3:+9789175 None:intergenic
TGATCCAGTAGTTTCTTGAT+GGG 0.518958 4.3:+9789305 None:intergenic
ACTGTGCCAGTGCACTCATT+TGG 0.524117 4.3:-9788665 MS.gene059697:CDS
GATGTTGGTGGCGACCTCAT+TGG 0.527521 4.3:+9789211 None:intergenic
CAAGATAAGGGGTGTGAGGT+AGG 0.528066 4.3:+9789005 None:intergenic
CGATAAACAAAGGTGTCTCC+AGG 0.528939 4.3:+9790875 None:intergenic
CCTTCATCCATCATGGGTTG+TGG 0.536511 4.3:-9788515 MS.gene059697:CDS
TGCTCACTATGGAATGCAAA+GGG 0.536716 4.3:-9790551 MS.gene059697:CDS
CCTTGGTTTGATGGAACAGA+AGG 0.537286 4.3:-9790920 MS.gene059697:CDS
AAGACCCATCAAGAAACTAC+TGG 0.542638 4.3:-9789309 MS.gene059697:CDS
CAGAAAACCTTGCTATCCAT+TGG 0.542644 4.3:-9791090 MS.gene059697:CDS
AATTTCCACAAAGCTGAGGC+TGG 0.543418 4.3:-9791268 MS.gene059697:CDS
TTATTAAAATCATAGCCATC+AGG 0.546504 4.3:+9788935 None:intergenic
TGGTGTTAGACATTATAAAT+GGG 0.546733 4.3:-9791248 MS.gene059697:CDS
ACCATTAATGGAAAGACTCC+AGG 0.548027 4.3:-9791175 MS.gene059697:CDS
TATGACAGATTGGAACTCCT+TGG 0.549024 4.3:-9790937 MS.gene059697:intron
GGAGATGGTGGAGATGTTGG+TGG 0.552505 4.3:+9789199 None:intergenic
TACCATGCCAATGGATAGCA+AGG 0.555804 4.3:+9791083 None:intergenic
ACAAATGCTACTTCTAGCAA+TGG 0.556255 4.3:-9788884 MS.gene059697:CDS
AGAAACAGGACAACCCCGCC+TGG 0.556484 4.3:-9789265 MS.gene059697:CDS
CCACAACCCATGATGGATGA+AGG 0.564653 4.3:+9788515 None:intergenic
TTGGTGGCGACCTCATTGGA+TGG 0.568529 4.3:+9789215 None:intergenic
CAAACACCAGCAAGTAAGCT+TGG 0.572447 4.3:+9790196 None:intergenic
ATGGGTTGTGGCAAAAGCAA+AGG 0.574548 4.3:-9788503 MS.gene059697:CDS
ATGCTCACTATGGAATGCAA+AGG 0.577390 4.3:-9790552 MS.gene059697:CDS
TTGTCCCAAGCTGGTGGAGA+TGG 0.577934 4.3:+9789184 None:intergenic
TCATGTCCATGAAGATGCCA+TGG 0.579018 4.3:+9788776 None:intergenic
ACCTACCATTCAAGCACAAG+AGG 0.579718 4.3:-9791152 MS.gene059697:CDS
CAATGAAAAGCCCAAACACC+AGG 0.582233 4.3:+9788611 None:intergenic
AAATCATAGCCATCAGGTGG+AGG 0.584412 4.3:+9788941 None:intergenic
TCTCAATGTCCTATACTACC+TGG 0.584728 4.3:-9790893 MS.gene059697:CDS
CCTGTCTAATACCATGCCAA+TGG 0.585753 4.3:+9791074 None:intergenic
AAGGTGTCTCCAGGTAGTAT+AGG 0.588687 4.3:+9790884 None:intergenic
ATGACTGTTGTTGAAGCAGA+TGG 0.592854 4.3:-9789412 MS.gene059697:CDS
AACCTTGCTATCCATTGGCA+TGG 0.593705 4.3:-9791085 MS.gene059697:CDS
AAGCTACCTTCATCCATCAT+GGG 0.594823 4.3:-9788521 MS.gene059697:CDS
GTCCAACCAAATGAGTGCAC+TGG 0.595748 4.3:+9788659 None:intergenic
AAGAATCTCTACATATACTC+AGG 0.600439 4.3:-9789364 MS.gene059697:CDS
TCAACATTGTCCCAAGCTGG+TGG 0.600784 4.3:+9789178 None:intergenic
AACCAAACACCTCCACCTGA+TGG 0.600941 4.3:-9788950 MS.gene059697:CDS
AACACACAAAACACTATAGA+CGG 0.600946 4.3:-9789064 MS.gene059697:CDS
CTTGGTTTGATGGAACAGAA+GGG 0.602438 4.3:-9790919 MS.gene059697:CDS
CAAAACTATGACTCTATCTG+AGG 0.612834 4.3:+9789090 None:intergenic
TTGGTTTGATGGAACAGAAG+GGG 0.617644 4.3:-9790918 MS.gene059697:CDS
GGTGAATTTCCACAAAGCTG+AGG 0.618690 4.3:-9791272 MS.gene059697:CDS
TCCCAAGCTGGTGGAGATGG+TGG 0.622614 4.3:+9789187 None:intergenic
GCATGATAAAGGTATGTACC+AGG 0.623377 4.3:+9790571 None:intergenic
TTTAAGTGCAACAAGATAAG+GGG 0.625406 4.3:+9788994 None:intergenic
AACAACAAATCGATAAACAA+AGG 0.630677 4.3:+9790865 None:intergenic
ATAATAGTGAGACACATCCA+TGG 0.633125 4.3:-9788793 MS.gene059697:CDS
TCAACTTCAACTAAGCCTAA+GGG 0.636069 4.3:-9791335 MS.gene059697:CDS
GCACAGTATTCTTCATAATG+GGG 0.640153 4.3:+9788681 None:intergenic
TTAAAATCATAGCCATCAGG+TGG 0.640896 4.3:+9788938 None:intergenic
GCAACAAGATAAGGGGTGTG+AGG 0.654315 4.3:+9789001 None:intergenic
AAGTTTCTTATAACAATCAG+GGG 0.660671 4.3:+9791204 None:intergenic
CCTACCATTCAAGCACAAGA+GGG 0.666183 4.3:-9791151 MS.gene059697:CDS
TGTTAGACATTATAAATGGG+AGG 0.685230 4.3:-9791245 MS.gene059697:CDS
CCTTCTGTTCCATCAAACCA+AGG 0.691723 4.3:+9790920 None:intergenic
ACTACCCAAACCATCCAATG+AGG 0.700116 4.3:-9789225 MS.gene059697:CDS
GCTGAAGTTCAATACAACTG+TGG 0.701274 4.3:-9788852 MS.gene059697:CDS
AGTATATGGAATGATTCGTG+TGG 0.709085 4.3:-9790521 MS.gene059697:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTATAATTTAAAATATTT+TGG + chr4.3:9788791-9788810 None:intergenic 0.0%
!! ATTAGATAAAAAAAACTATT+TGG - chr4.3:9788825-9788844 MS.gene059697:CDS 10.0%
!! CATAAAAATTATATCTAATT+TGG - chr4.3:9789210-9789229 MS.gene059697:CDS 10.0%
!!! AAACATAGAAACAATAATTT+TGG + chr4.3:9788520-9788539 None:intergenic 15.0%
!!! TATTGTTTCTTTGTATATTT+GGG - chr4.3:9789551-9789570 MS.gene059697:intron 15.0%
!!! TCACCAAATTATAATTTTTT+GGG + chr4.3:9791122-9791141 None:intergenic 15.0%
!!! TTATTGTTTCTTTGTATATT+TGG - chr4.3:9789550-9789569 MS.gene059697:intron 15.0%
!!! TTCACCAAATTATAATTTTT+TGG + chr4.3:9791123-9791142 None:intergenic 15.0%
!! AGACCCAAAAAATTATAATT+TGG - chr4.3:9791116-9791135 MS.gene059697:CDS 20.0%
!! ATATTATTGAACCACAATTT+AGG - chr4.3:9790114-9790133 MS.gene059697:CDS 20.0%
!! TATTATTGAACCACAATTTA+GGG - chr4.3:9790115-9790134 MS.gene059697:CDS 20.0%
!! TTAAAGCTTCAATAAAATCA+TGG + chr4.3:9789055-9789074 None:intergenic 20.0%
!! TTAATATATAATGACTGATG+TGG - chr4.3:9788858-9788877 MS.gene059697:CDS 20.0%
!! TTGTAAATTGTAATAATGCA+GGG - chr4.3:9790382-9790401 MS.gene059697:intron 20.0%
!! TTTGTAAATTGTAATAATGC+AGG - chr4.3:9790381-9790400 MS.gene059697:intron 20.0%
!!! AAAATATTTTGGACTAGTAA+AGG + chr4.3:9788780-9788799 None:intergenic 20.0%
!!! AAACTTGTTATAACCATTAA+TGG - chr4.3:9788637-9788656 MS.gene059697:CDS 20.0%
!!! AATTAAACGAGGTTAAATTT+TGG + chr4.3:9790324-9790343 None:intergenic 20.0%
!!! ATCATTCAAGTTTTTAAACA+AGG - chr4.3:9789797-9789816 MS.gene059697:intron 20.0%
! AACAACAAATCGATAAACAA+AGG + chr4.3:9788962-9788981 None:intergenic 25.0%
! AAGTTTCTTATAACAATCAG+GGG + chr4.3:9788623-9788642 None:intergenic 25.0%
! AATGAATGATTACCTCTATT+TGG + chr4.3:9789759-9789778 None:intergenic 25.0%
! ACAAGTTTCTTATAACAATC+AGG + chr4.3:9788625-9788644 None:intergenic 25.0%
! ATAGAGTCTCATTTCTATAT+GGG - chr4.3:9791240-9791259 MS.gene059697:CDS 25.0%
! ATTGTTCATAAGTACTCTTA+TGG + chr4.3:9789393-9789412 None:intergenic 25.0%
! CAAGTTTCTTATAACAATCA+GGG + chr4.3:9788624-9788643 None:intergenic 25.0%
! CACAACAATGTTGTAAAAAT+CGG - chr4.3:9789866-9789885 MS.gene059697:intron 25.0%
! CTATCAAAGTCATAAGAAAA+AGG + chr4.3:9789346-9789365 None:intergenic 25.0%
! TATAGAGTCTCATTTCTATA+TGG - chr4.3:9791239-9791258 MS.gene059697:CDS 25.0%
! TCTATGTTTCTTTCTAATTC+TGG - chr4.3:9788531-9788550 MS.gene059697:CDS 25.0%
! TTATTAAAATCATAGCCATC+AGG + chr4.3:9790892-9790911 None:intergenic 25.0%
!! TAATTATGATATTTTCAGCG+TGG - chr4.3:9790909-9790928 MS.gene059697:CDS 25.0%
!! TGGTGTTAGACATTATAAAT+GGG - chr4.3:9788576-9788595 MS.gene059697:CDS 25.0%
!!! GAAGCATTATTTTGAATGAT+TGG - chr4.3:9789365-9789384 MS.gene059697:CDS 25.0%
!!! GGTTAAATTTTGGTAATAGT+CGG + chr4.3:9790314-9790333 None:intergenic 25.0%
!!! GTTAAATTTTGGTAATAGTC+GGG + chr4.3:9790313-9790332 None:intergenic 25.0%
!!! TTATCGATTTGTTGTTGATA+GGG - chr4.3:9788966-9788985 MS.gene059697:CDS 25.0%
!!! TTTATCGATTTGTTGTTGAT+AGG - chr4.3:9788965-9788984 MS.gene059697:CDS 25.0%
!!! TTTTGAAGAAGGAATTGAAA+GGG - chr4.3:9791275-9791294 MS.gene059697:CDS 25.0%
!!! TTTTTGAAGAAGGAATTGAA+AGG - chr4.3:9791274-9791293 MS.gene059697:CDS 25.0%
AAACATGTCAAAACTAGTTC+TGG + chr4.3:9790364-9790383 None:intergenic 30.0%
AACACACAAAACACTATAGA+CGG - chr4.3:9790760-9790779 MS.gene059697:intron 30.0%
AACCAGATGTAAGAATTAGA+TGG - chr4.3:9789452-9789471 MS.gene059697:intron 30.0%
AAGAATCTCTACATATACTC+AGG - chr4.3:9790460-9790479 MS.gene059697:CDS 30.0%
AAGTCATAAGAAAAAGGTTC+AGG + chr4.3:9789340-9789359 None:intergenic 30.0%
ACATATTTAATGTTACAGCC+TGG - chr4.3:9789235-9789254 MS.gene059697:CDS 30.0%
AGAGTGAGAAAAATTAAACG+AGG + chr4.3:9790335-9790354 None:intergenic 30.0%
AGTCATAAGAAAAAGGTTCA+GGG + chr4.3:9789339-9789358 None:intergenic 30.0%
ATCCATCTAATTCTTACATC+TGG + chr4.3:9789457-9789476 None:intergenic 30.0%
CTTCTAGCAATGGAATTTAT+AGG - chr4.3:9790950-9790969 MS.gene059697:intron 30.0%
CTTTAAGTGCAACAAGATAA+GGG + chr4.3:9790834-9790853 None:intergenic 30.0%
GCACTTAAAGAGAATATAAC+TGG - chr4.3:9790844-9790863 MS.gene059697:intron 30.0%
GTGTTGAAATTGAAAAGCAA+TGG + chr4.3:9789159-9789178 None:intergenic 30.0%
TAGAGATTCTTAACCACAAA+AGG + chr4.3:9790451-9790470 None:intergenic 30.0%
TAGTTAAAAATGCCTAAACC+AGG + chr4.3:9790580-9790599 None:intergenic 30.0%
TCTCATTTCTATATGGGAAT+GGG - chr4.3:9791246-9791265 MS.gene059697:CDS 30.0%
TCTTTAAGTGCAACAAGATA+AGG + chr4.3:9790835-9790854 None:intergenic 30.0%
TGTTAGACATTATAAATGGG+AGG - chr4.3:9788579-9788598 MS.gene059697:CDS 30.0%
TGTTTGATCAACAGTGAATT+TGG + chr4.3:9789120-9789139 None:intergenic 30.0%
TTCTTCAATTGTCTAATTGC+TGG - chr4.3:9789525-9789544 MS.gene059697:intron 30.0%
TTTAAGTGCAACAAGATAAG+GGG + chr4.3:9790833-9790852 None:intergenic 30.0%
! ATCTTCATGGACATGATTTT+TGG - chr4.3:9791055-9791074 MS.gene059697:intron 30.0%
! CATGGTTCAATTGGTTTAAT+CGG + chr4.3:9790159-9790178 None:intergenic 30.0%
! CTGGTGTTAGACATTATAAA+TGG - chr4.3:9788575-9788594 MS.gene059697:CDS 30.0%
! GAGGTTTGATTGTGTAATTT+TGG + chr4.3:9790708-9790727 None:intergenic 30.0%
! TCTTCATGGACATGATTTTT+GGG - chr4.3:9791056-9791075 MS.gene059697:intron 30.0%
! TTTTTATAAAGAAGCCAGAC+TGG + chr4.3:9790016-9790035 None:intergenic 30.0%
AAGAAGGAATTGAAAGGGTT+GGG - chr4.3:9791280-9791299 MS.gene059697:CDS 35.0%
AATGACTACGACTACCATTA+AGG - chr4.3:9790242-9790261 MS.gene059697:CDS 35.0%
AGCACTTAGTTTCCAAATAG+AGG - chr4.3:9789744-9789763 MS.gene059697:intron 35.0%
AGTACTTATGAACAATCTGC+TGG - chr4.3:9789397-9789416 MS.gene059697:CDS 35.0%
AGTATATGGAATGATTCGTG+TGG - chr4.3:9789303-9789322 MS.gene059697:CDS 35.0%
ATAATAGTGAGACACATCCA+TGG - chr4.3:9791031-9791050 MS.gene059697:intron 35.0%
CAAAACTATGACTCTATCTG+AGG + chr4.3:9790737-9790756 None:intergenic 35.0%
CAATGTGATCAAAACTAGAC+CGG + chr4.3:9790208-9790227 None:intergenic 35.0%
CAGTGAATTTGGCAAAATCA+TGG + chr4.3:9789109-9789128 None:intergenic 35.0%
CTTCAACAACAGTCATGTTA+TGG + chr4.3:9790408-9790427 None:intergenic 35.0%
GCACAGTATTCTTCATAATG+GGG + chr4.3:9791146-9791165 None:intergenic 35.0%
GGCACAGTATTCTTCATAAT+GGG + chr4.3:9791147-9791166 None:intergenic 35.0%
GTCTCATTTCTATATGGGAA+TGG - chr4.3:9791245-9791264 MS.gene059697:CDS 35.0%
TACCTTTATCATGCTCACTA+TGG - chr4.3:9789262-9789281 MS.gene059697:CDS 35.0%
TCAACTTCAACTAAGCCTAA+GGG - chr4.3:9788489-9788508 MS.gene059697:CDS 35.0%
TCACTTCTGATTCATGGAAA+AGG - chr4.3:9789583-9789602 MS.gene059697:intron 35.0%
TGATCCAGTAGTTTCTTGAT+GGG + chr4.3:9790522-9790541 None:intergenic 35.0%
TGGCACAGTATTCTTCATAA+TGG + chr4.3:9791148-9791167 None:intergenic 35.0%
TGTGCATACATCAAAAACCA+TGG + chr4.3:9789850-9789869 None:intergenic 35.0%
TTAAAAATGCCTAAACCAGG+CGG + chr4.3:9790577-9790596 None:intergenic 35.0%
TTAAAATCATAGCCATCAGG+TGG + chr4.3:9790889-9790908 None:intergenic 35.0%
TTCAACTTCAACTAAGCCTA+AGG - chr4.3:9788488-9788507 MS.gene059697:CDS 35.0%
TTCCATAGTGAGCATGATAA+AGG + chr4.3:9789267-9789286 None:intergenic 35.0%
! ACAAATGCTACTTCTAGCAA+TGG - chr4.3:9790940-9790959 MS.gene059697:intron 35.0%
! ACACTATGTTGATCCTTTTG+TGG - chr4.3:9790435-9790454 MS.gene059697:CDS 35.0%
! CTTTTGGATCATGGTTCAAT+TGG + chr4.3:9790168-9790187 None:intergenic 35.0%
! GAACCACAATTTAGGGTTAA+GGG - chr4.3:9790122-9790141 MS.gene059697:CDS 35.0%
! GTCTGCAATTCCTTTTCAAT+GGG - chr4.3:9789423-9789442 MS.gene059697:CDS 35.0%
! TGAACCACAATTTAGGGTTA+AGG - chr4.3:9790121-9790140 MS.gene059697:CDS 35.0%
! TGTCTGCAATTCCTTTTCAA+TGG - chr4.3:9789422-9789441 MS.gene059697:CDS 35.0%
!!! GATTTTTGGGTACTTGGATA+TGG - chr4.3:9791069-9791088 MS.gene059697:intron 35.0%
AACTGCGTTTCAACCACAAT+TGG - chr4.3:9789985-9790004 MS.gene059697:intron 40.0%
AAGACCCATCAAGAAACTAC+TGG - chr4.3:9790515-9790534 MS.gene059697:CDS 40.0%
AAGCTACCTTCATCCATCAT+GGG - chr4.3:9791303-9791322 MS.gene059697:CDS 40.0%
ACCATTAATGGAAAGACTCC+AGG - chr4.3:9788649-9788668 MS.gene059697:CDS 40.0%
AGAATCGTATGTGACTGATG+TGG + chr4.3:9790268-9790287 None:intergenic 40.0%
ATCGGATAATCCTGGTGTTT+GGG - chr4.3:9791203-9791222 MS.gene059697:CDS 40.0%
ATGACTGTTGTTGAAGCAGA+TGG - chr4.3:9790412-9790431 MS.gene059697:CDS 40.0%
ATGCTCACTATGGAATGCAA+AGG - chr4.3:9789272-9789291 MS.gene059697:CDS 40.0%
CAAATGTTGTCAGCAGAAAC+AGG - chr4.3:9790545-9790564 MS.gene059697:CDS 40.0%
CATGAATCAGAAGTGACTGA+GGG + chr4.3:9789579-9789598 None:intergenic 40.0%
GAAAAAGGTTCAGGGTCATT+AGG + chr4.3:9789331-9789350 None:intergenic 40.0%
GAAGAAGGAATTGAAAGGGT+TGG - chr4.3:9791279-9791298 MS.gene059697:CDS 40.0%
GCTGAAGTTCAATACAACTG+TGG - chr4.3:9790972-9790991 MS.gene059697:intron 40.0%
GGGAGGTGAAGTATGATTAT+AGG - chr4.3:9788596-9788615 MS.gene059697:CDS 40.0%
GTGATCCAGTAGTTTCTTGA+TGG + chr4.3:9790523-9790542 None:intergenic 40.0%
GTTTCTGCTGACAACATTTG+AGG + chr4.3:9790545-9790564 None:intergenic 40.0%
TAAAAATGCCTAAACCAGGC+GGG + chr4.3:9790576-9790595 None:intergenic 40.0%
TAATCTCAGTTGAGACACCA+TGG - chr4.3:9789830-9789849 MS.gene059697:intron 40.0%
TATGACAGATTGGAACTCCT+TGG - chr4.3:9788887-9788906 MS.gene059697:CDS 40.0%
TCCTGGAGTCTTTCCATTAA+TGG + chr4.3:9788653-9788672 None:intergenic 40.0%
TCTCAATGTCCTATACTACC+TGG - chr4.3:9788931-9788950 MS.gene059697:CDS 40.0%
TGACCCTTAACCCTAAATTG+TGG + chr4.3:9790128-9790147 None:intergenic 40.0%
TGCTCACTATGGAATGCAAA+GGG - chr4.3:9789273-9789292 MS.gene059697:CDS 40.0%
TGGGTACTTGGATATGGAAA+GGG - chr4.3:9791075-9791094 MS.gene059697:CDS 40.0%
TTGGGTACTTGGATATGGAA+AGG - chr4.3:9791074-9791093 MS.gene059697:intron 40.0%
TTTCTATATGGGAATGGGAG+TGG - chr4.3:9791251-9791270 MS.gene059697:CDS 40.0%
! AATTCCTTTTCAATGGGTGG+GGG - chr4.3:9789429-9789448 MS.gene059697:intron 40.0%
! ATGACTCTATCTGAGGTTGT+TGG + chr4.3:9790730-9790749 None:intergenic 40.0%
! ATTGGAACTCCTTGGTTTGA+TGG - chr4.3:9788895-9788914 MS.gene059697:CDS 40.0%
! CAATTCCTTTTCAATGGGTG+GGG - chr4.3:9789428-9789447 MS.gene059697:intron 40.0%
! CAATTTAGGGTTAAGGGTCA+AGG - chr4.3:9790128-9790147 MS.gene059697:CDS 40.0%
! CAGAAAACCTTGCTATCCAT+TGG - chr4.3:9788734-9788753 MS.gene059697:CDS 40.0%
! CTTGGTTTGATGGAACAGAA+GGG - chr4.3:9788905-9788924 MS.gene059697:CDS 40.0%
! GATCAAACGAGTGAGACTTT+TGG + chr4.3:9790184-9790203 None:intergenic 40.0%
! GCAATTCCTTTTCAATGGGT+GGG - chr4.3:9789427-9789446 MS.gene059697:intron 40.0%
! GCATGATAAAGGTATGTACC+AGG + chr4.3:9789256-9789275 None:intergenic 40.0%
! GTGGTTTGTGTATGACAGAT+TGG - chr4.3:9788877-9788896 MS.gene059697:CDS 40.0%
! TGCAATTCCTTTTCAATGGG+TGG - chr4.3:9789426-9789445 MS.gene059697:intron 40.0%
! TTGGTTTGATGGAACAGAAG+GGG - chr4.3:9788906-9788925 MS.gene059697:CDS 40.0%
! TTTGGTGAGCTTTGATTGCA+AGG + chr4.3:9790690-9790709 None:intergenic 40.0%
!! ATGGGAGTGGTTTTTGAAGA+AGG - chr4.3:9791264-9791283 MS.gene059697:CDS 40.0%
!! CTGGTTCTATCGGTTCTATA+GGG + chr4.3:9789961-9789980 None:intergenic 40.0%
!!! ATAATTTTGGTGCTGCCCTT+AGG + chr4.3:9788507-9788526 None:intergenic 40.0%
!!! GGACATGATTTTTGGGTACT+TGG - chr4.3:9791063-9791082 MS.gene059697:intron 40.0%
AAAAATGCCTAAACCAGGCG+GGG + chr4.3:9790575-9790594 None:intergenic 45.0%
AAATCATAGCCATCAGGTGG+AGG + chr4.3:9790886-9790905 None:intergenic 45.0%
AATTTCCACAAAGCTGAGGC+TGG - chr4.3:9788556-9788575 MS.gene059697:CDS 45.0%
ACACATCCATGGCATCTTCA+TGG - chr4.3:9791042-9791061 MS.gene059697:intron 45.0%
ACCTACCATTCAAGCACAAG+AGG - chr4.3:9788672-9788691 MS.gene059697:CDS 45.0%
ACTACCCAAACCATCCAATG+AGG - chr4.3:9790599-9790618 MS.gene059697:intron 45.0%
AGGTTTCGATCGGATAATCC+TGG - chr4.3:9791195-9791214 MS.gene059697:CDS 45.0%
AGTCTCACTCGTTTGATCAC+CGG - chr4.3:9790186-9790205 MS.gene059697:CDS 45.0%
ATCACCCTCTTGTGCTTGAA+TGG + chr4.3:9788680-9788699 None:intergenic 45.0%
CAAACACCAGCAAGTAAGCT+TGG + chr4.3:9789631-9789650 None:intergenic 45.0%
CAATGAAAAGCCCAAACACC+AGG + chr4.3:9791216-9791235 None:intergenic 45.0%
CATTTGGTTGGACTGCTTTG+AGG - chr4.3:9791175-9791194 MS.gene059697:CDS 45.0%
CCATGAATCAGAAGTGACTG+AGG + chr4.3:9789580-9789599 None:intergenic 45.0%
CCATTGGCATGGTATTAGAC+AGG - chr4.3:9788750-9788769 MS.gene059697:CDS 45.0%
CCTACCATTCAAGCACAAGA+GGG - chr4.3:9788673-9788692 MS.gene059697:CDS 45.0%
CCTATAGAACCGATAGAACC+AGG - chr4.3:9789959-9789978 MS.gene059697:intron 45.0%
CCTCAGTCACTTCTGATTCA+TGG - chr4.3:9789577-9789596 MS.gene059697:intron 45.0%
CCTGTCTAATACCATGCCAA+TGG + chr4.3:9788753-9788772 None:intergenic 45.0%
CCTTCTGTTCCATCAAACCA+AGG + chr4.3:9788907-9788926 None:intergenic 45.0%
CTATAGACGGTGTTCGTCAT+TGG - chr4.3:9790773-9790792 MS.gene059697:intron 45.0%
CTGCAAGTGTGAATTGTCTG+CGG + chr4.3:9789938-9789957 None:intergenic 45.0%
GAAGCTACCTTCATCCATCA+TGG - chr4.3:9791302-9791321 MS.gene059697:CDS 45.0%
GAGACGACTGTTTGCGAAAA+GGG + chr4.3:9789679-9789698 None:intergenic 45.0%
GATCGGATAATCCTGGTGTT+TGG - chr4.3:9791202-9791221 MS.gene059697:CDS 45.0%
GGCAAAAGCAAAGGCTTCTT+AGG - chr4.3:9791330-9791349 MS.gene059697:CDS 45.0%
GGTGAATTTCCACAAAGCTG+AGG - chr4.3:9788552-9788571 MS.gene059697:CDS 45.0%
GTTGTAAAAATCGGACCGAC+TGG - chr4.3:9789875-9789894 MS.gene059697:intron 45.0%
TACCATGCCAATGGATAGCA+AGG + chr4.3:9788744-9788763 None:intergenic 45.0%
TATGGAATGCAAAGGGAAGC+AGG - chr4.3:9789280-9789299 MS.gene059697:CDS 45.0%
TCATGTCCATGAAGATGCCA+TGG + chr4.3:9791051-9791070 None:intergenic 45.0%
TGAGACGACTGTTTGCGAAA+AGG + chr4.3:9789680-9789699 None:intergenic 45.0%
TGGCATGGTATTAGACAGGT+TGG - chr4.3:9788754-9788773 MS.gene059697:CDS 45.0%
TGGTTTCCAGTGAAACCAGT+CGG + chr4.3:9789893-9789912 None:intergenic 45.0%
TTAGCACCAAGCTTACTTGC+TGG - chr4.3:9789622-9789641 MS.gene059697:intron 45.0%
! AACCTTGCTATCCATTGGCA+TGG - chr4.3:9788739-9788758 MS.gene059697:CDS 45.0%
! AAGGTGTCTCCAGGTAGTAT+AGG + chr4.3:9788943-9788962 None:intergenic 45.0%
! ACTCTATCTGAGGTTGTTGG+AGG + chr4.3:9790727-9790746 None:intergenic 45.0%
! ATGGGTTGTGGCAAAAGCAA+AGG - chr4.3:9791321-9791340 MS.gene059697:CDS 45.0%
! CAAAGGGAAGCAGGAGTATA+TGG - chr4.3:9789289-9789308 MS.gene059697:CDS 45.0%
! CACAATTGGTTCAACCAGTC+TGG - chr4.3:9789999-9790018 MS.gene059697:intron 45.0%
! CAGACTGGTTGAACCAATTG+TGG + chr4.3:9790001-9790020 None:intergenic 45.0%
! CCTTGGTTTGATGGAACAGA+AGG - chr4.3:9788904-9788923 MS.gene059697:CDS 45.0%
! CGAGTGAGACTTTTGGATCA+TGG + chr4.3:9790177-9790196 None:intergenic 45.0%
! TGTGACTGATGTGGCCTTAA+TGG + chr4.3:9790259-9790278 None:intergenic 45.0%
! TTTTCGCAAACAGTCGTCTC+AGG - chr4.3:9789679-9789698 MS.gene059697:intron 45.0%
!! CCTGGTTCTATCGGTTCTAT+AGG + chr4.3:9789962-9789981 None:intergenic 45.0%
!! CGATAAACAAAGGTGTCTCC+AGG + chr4.3:9788952-9788971 None:intergenic 45.0%
!! GACTGCTTTGAGGTTTCGAT+CGG - chr4.3:9791185-9791204 MS.gene059697:CDS 45.0%
!! GCAGTTCAACCTGGTTCTAT+CGG + chr4.3:9789971-9789990 None:intergenic 45.0%
AAACCAGCTGGTGCAACACA+TGG - chr4.3:9789907-9789926 MS.gene059697:intron 50.0%
AACCAAACACCTCCACCTGA+TGG - chr4.3:9790874-9790893 MS.gene059697:CDS 50.0%
ACTGTGCCAGTGCACTCATT+TGG - chr4.3:9791159-9791178 MS.gene059697:CDS 50.0%
CCCTCTTGTGCTTGAATGGT+AGG + chr4.3:9788676-9788695 None:intergenic 50.0%
GACTCAACATTGTCCCAAGC+TGG + chr4.3:9790652-9790671 None:intergenic 50.0%
GCGACCTCATTGGATGGTTT+GGG + chr4.3:9790606-9790625 None:intergenic 50.0%
GGTTGAAACGCAGTTCAACC+TGG + chr4.3:9789980-9789999 None:intergenic 50.0%
GTCCAACCAAATGAGTGCAC+TGG + chr4.3:9791168-9791187 None:intergenic 50.0%
TAACACCAGCCTCAGCTTTG+TGG + chr4.3:9788564-9788583 None:intergenic 50.0%
TCAACATTGTCCCAAGCTGG+TGG + chr4.3:9790649-9790668 None:intergenic 50.0%
TGCCAGTGCACTCATTTGGT+TGG - chr4.3:9791163-9791182 MS.gene059697:CDS 50.0%
TGGTTTCACTGGAAACCAGC+TGG - chr4.3:9789895-9789914 MS.gene059697:intron 50.0%
TGTGCTTGAATGGTAGGTCC+TGG + chr4.3:9788670-9788689 None:intergenic 50.0%
! CAAGATAAGGGGTGTGAGGT+AGG + chr4.3:9790822-9790841 None:intergenic 50.0%
! CCTTCATCCATCATGGGTTG+TGG - chr4.3:9791309-9791328 MS.gene059697:CDS 50.0%
! GCAACAAGATAAGGGGTGTG+AGG + chr4.3:9790826-9790845 None:intergenic 50.0%
! GCTTTTGCCACAACCCATGA+TGG + chr4.3:9791319-9791338 None:intergenic 50.0%
!! CCACAACCCATGATGGATGA+AGG + chr4.3:9791312-9791331 None:intergenic 50.0%
!! TGCGAAAAGGGAGAGCATTC+AGG + chr4.3:9789667-9789686 None:intergenic 50.0%
GAACCATGTGTTGCACCAGC+TGG + chr4.3:9789913-9789932 None:intergenic 55.0%
GGCGACCTCATTGGATGGTT+TGG + chr4.3:9790607-9790626 None:intergenic 55.0%
GGTTCCCCCACCCATTGAAA+AGG + chr4.3:9789436-9789455 None:intergenic 55.0%
TCCACCATCTCCACCAGCTT+GGG - chr4.3:9790636-9790655 MS.gene059697:intron 55.0%
TTGTCCCAAGCTGGTGGAGA+TGG + chr4.3:9790643-9790662 None:intergenic 55.0%
!! AGCCATCAGGTGGAGGTGTT+TGG + chr4.3:9790879-9790898 None:intergenic 55.0%
!! ATCGGACCGACTGGTTTCAC+TGG - chr4.3:9789884-9789903 MS.gene059697:intron 55.0%
!! GATGTTGGTGGCGACCTCAT+TGG + chr4.3:9790616-9790635 None:intergenic 55.0%
!! GGAGATGGTGGAGATGTTGG+TGG + chr4.3:9790628-9790647 None:intergenic 55.0%
!! GGTGGAGATGGTGGAGATGT+TGG + chr4.3:9790631-9790650 None:intergenic 55.0%
!! TTGGTGGCGACCTCATTGGA+TGG + chr4.3:9790612-9790631 None:intergenic 55.0%
AGAAACAGGACAACCCCGCC+TGG - chr4.3:9790559-9790578 MS.gene059697:CDS 60.0%
AGGACAACCCCGCCTGGTTT+AGG - chr4.3:9790565-9790584 MS.gene059697:CDS 60.0%
CTCCACCATCTCCACCAGCT+TGG - chr4.3:9790635-9790654 MS.gene059697:intron 60.0%
TCCCAAGCTGGTGGAGATGG+TGG + chr4.3:9790640-9790659 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 9788484 9791362 9788484 ID=MS.gene059697
chr4.3 mRNA 9788484 9791362 9788484 ID=MS.gene059697.t1;Parent=MS.gene059697
chr4.3 exon 9791075 9791362 9791075 ID=MS.gene059697.t1.exon1;Parent=MS.gene059697.t1
chr4.3 CDS 9791075 9791362 9791075 ID=cds.MS.gene059697.t1;Parent=MS.gene059697.t1
chr4.3 exon 9790859 9790951 9790859 ID=MS.gene059697.t1.exon2;Parent=MS.gene059697.t1
chr4.3 CDS 9790859 9790951 9790859 ID=cds.MS.gene059697.t1;Parent=MS.gene059697.t1
chr4.3 exon 9790387 9790593 9790387 ID=MS.gene059697.t1.exon3;Parent=MS.gene059697.t1
chr4.3 CDS 9790387 9790593 9790387 ID=cds.MS.gene059697.t1;Parent=MS.gene059697.t1
chr4.3 exon 9790081 9790263 9790081 ID=MS.gene059697.t1.exon4;Parent=MS.gene059697.t1
chr4.3 CDS 9790081 9790263 9790081 ID=cds.MS.gene059697.t1;Parent=MS.gene059697.t1
chr4.3 exon 9788484 9789443 9788484 ID=MS.gene059697.t1.exon5;Parent=MS.gene059697.t1
chr4.3 CDS 9788484 9789443 9788484 ID=cds.MS.gene059697.t1;Parent=MS.gene059697.t1
Gene Sequence

>MS.gene059697

ATGGTTCAACTTCAACTAAGCCTAAGGGCAGCACCAAAATTATTGTTTCTATGTTTCTTTCTAATTCTGGTGAATTTCCACAAAGCTGAGGCTGGTGTTAGACATTATAAATGGGAGGTGAAGTATGATTATAGGTCCCCTGATTGTTATAAGAAACTTGTTATAACCATTAATGGAAAGACTCCAGGACCTACCATTCAAGCACAAGAGGGTGATACTGTTGTAGTTGAAGTTAACAACAAATTGCTCACAGAAAACCTTGCTATCCATTGGCATGGTATTAGACAGGTTGGCCTTTACTAGTCCAAAATATTTTAAATTATAATATGAATAAATATAAAATTAGATAAAAAAAACTATTTGGTGCTTAATGATTAATATATAATGACTGATGTGGTTTGTGTATGACAGATTGGAACTCCTTGGTTTGATGGAACAGAAGGGGTGTCTCAATGTCCTATACTACCTGGAGACACCTTTGTTTATCGATTTGTTGTTGATAGGGTAAGTTGTCAAAATGAAAAGATGAATGAATTCGTGCATGTTTAGAATCAATATGAGTTTGAGACCATGATTTTATTGAAGCTTTAAAGTGTAGTTTTCGTCAAATCTTAGTGACACACCATGATTTTGCCAAATTCACTGTTGATCAAACATGATCTATTCATTGATCCATTGCTTTTCAATTTCAACACTAACAAACAATATTTATATAATCAATCATAGCATAAAAATTATATCTAATTTGGTTACATATTTAATGTTACAGCCTGGTACATACCTTTATCATGCTCACTATGGAATGCAAAGGGAAGCAGGAGTATATGGAATGATTCGTGTGGCACCTAATGACCCTGAACCTTTTTCTTATGACTTTGATAGAAGCATTATTTTGAATGATTGGTACCATAAGAGTACTTATGAACAATCTGCTGGATTGTCTGCAATTCCTTTTCAATGGGTGGGGGAACCAGATGTAAGAATTAGATGGATATACTAATCAGAAAAATACAAATTCAAAATCTTATATCTTAATTATCTTTCTTCAATTGTCTAATTGCTGGTTTTATTGTTTCTTTGTATATTTGGGTTCCCTCAGTCACTTCTGATTCATGGAAAAGGAAGATACAACTGTTCGTTAGCACCAAGCTTACTTGCTGGTGTTTGTAACTCATCAAATCCTGAATGCTCTCCCTTTTCGCAAACAGTCGTCTCAGGAAAAACATACAGAATTAGAGTTGCTAGCTTGACTGCTTTATCAGCACTTAGTTTCCAAATAGAGGTAATCATTCATTCACTCAATTATTCTAAGTATCATTCAAGTTTTTAAACAAGGTCTGCGACAATAATCTCAGTTGAGACACCATGGTTTTTGATGTATGCACAACAATGTTGTAAAAATCGGACCGACTGGTTTCACTGGAAACCAGCTGGTGCAACACATGGTTCAGCCGCAGACAATTCACACTTGCAGCCCTATAGAACCGATAGAACCAGGTTGAACTGCGTTTCAACCACAATTGGTTCAACCAGTCTGGCTTCTTTATAAAAAATATACATTTTTAATGTCTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTCTTAGTCATATTATTGAACCACAATTTAGGGTTAAGGGTCAAGGCTAAACCGATTAAACCAATTGAACCATGATCCAAAAGTCTCACTCGTTTGATCACCGGTCTAGTTTTGATCACATTGATCTACTATCACAGAATGACTACGACTACCATTAAGGCCACATCAGTCACATACGATTCTTTGCAATATCAAAAGATTGTGACCCGACTATTACCAAAATTTAACCTCGTTTAATTTTTCTCACTCTTTACATCCAGAACTAGTTTTGACATGTTTGTAAATTGTAATAATGCAGGGCCATAACATGACTGTTGTTGAAGCAGATGGACACTATGTTGATCCTTTTGTGGTTAAGAATCTCTACATATACTCAGGTGAAACATACTCAGTTCTAGTCAAAACTGATCAAGACCCATCAAGAAACTACTGGATCACCTCAAATGTTGTCAGCAGAAACAGGACAACCCCGCCTGGTTTAGGCATTTTTAACTACTACCCAAACCATCCAATGAGGTCGCCACCAACATCTCCACCATCTCCACCAGCTTGGGACAATGTTGAGTCAAGACATACTCAAAGCCTTGCAATCAAAGCTCACCAAAATTACACAATCAAACCTCCAACAACCTCAGATAGAGTCATAGTTTTGCTCAACACACAAAACACTATAGACGGTGTTCGTCATTGGTCTGTTAACAACGTATCATTTTTCCTACCTCACACCCCTTATCTTGTTGCACTTAAAGAGAATATAACTGGTGAATTCAACCAAACACCTCCACCTGATGGCTATGATTTTAATAATTATGATATTTTCAGCGTGGCTAACAACACAAATGCTACTTCTAGCAATGGAATTTATAGGCTGAAGTTCAATACAACTGTGGATATTATACTACAAAATGCAAACACTATGAATAAAAATAATAGTGAGACACATCCATGGCATCTTCATGGACATGATTTTTGGGTACTTGGATATGGAAAGGGTAAGTTTGATGTGAACAAAGACCCAAAAAATTATAATTTGGTGAACCCCATTATGAAGAATACTGTGCCAGTGCACTCATTTGGTTGGACTGCTTTGAGGTTTCGATCGGATAATCCTGGTGTTTGGGCTTTTCATTGTCATATAGAGTCTCATTTCTATATGGGAATGGGAGTGGTTTTTGAAGAAGGAATTGAAAGGGTTGGGAAGCTACCTTCATCCATCATGGGTTGTGGCAAAAGCAAAGGCTTCTTAGGCCATAATTAA

Protein sequence

>MS.gene059697.t1

MVQLQLSLRAAPKLLFLCFFLILVNFHKAEAGVRHYKWEVKYDYRSPDCYKKLVITINGKTPGPTIQAQEGDTVVVEVNNKLLTENLAIHWHGIRQIGTPWFDGTEGVSQCPILPGDTFVYRFVVDRPGTYLYHAHYGMQREAGVYGMIRVAPNDPEPFSYDFDRSIILNDWYHKSTYEQSAGLSAIPFQWVGEPDSLLIHGKGRYNCSLAPSLLAGVCNSSNPECSPFSQTVVSGKTYRIRVASLTALSALSFQIEGHNMTVVEADGHYVDPFVVKNLYIYSGETYSVLVKTDQDPSRNYWITSNVVSRNRTTPPGLGIFNYYPNHPMRSPPTSPPSPPAWDNVESRHTQSLAIKAHQNYTIKPPTTSDRVIVLLNTQNTIDGVRHWSVNNVSFFLPHTPYLVALKENITGEFNQTPPPDGYDFNNYDIFSVANNTNATSSNGIYRLKFNTTVDIILQNANTMNKNNSETHPWHLHGHDFWVLGYGKGKFDVNKDPKNYNLVNPIMKNTVPVHSFGWTALRFRSDNPGVWAFHCHIESHFYMGMGVVFEEGIERVGKLPSSIMGCGKSKGFLGHN