AlfalfaGEDB | MS.gene41144

M. sativa cultivar XinJiangDaYe / MS.gene41144

KEGG: K08956
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005488 GO:0005524 GO:0005575 GO:0006508 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0008270 GO:0016020 GO:0016021 GO:0016787 GO:0017076 GO:0019538 GO:0030554 GO:0031224 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0044238 GO:0046872 GO:0046914 GO:0070011 GO:0071704 GO:0097159 GO:0097367 GO:0110165 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00004.32 PF01434.21 PF06480.18 PF17862.4

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41144.t1	XP_003606687.1	96.8	808	25	1	1	808	1	807	0.00E+00	1471.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41144.t1	Q8VZI8	73.9	820	195	7	1	808	1	813	0.0e+00	1119.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41144.t1	G7JUV4	96.8	808	25	1	1	808	1	807	0.0e+00	1471.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene012809	MS.gene41144	PPI
MS.gene046318	MS.gene41144	PPI
MS.gene064475	MS.gene41144	PPI
MS.gene064818	MS.gene41144	PPI
MS.gene071196	MS.gene41144	PPI
MS.gene32815	MS.gene41144	PPI
MS.gene37421	MS.gene41144	PPI
MS.gene41144	MS.gene32811	PPI
MS.gene41144	MS.gene012811	PPI
MS.gene41144	MS.gene023188	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41144.t1	MTR_4g064350	97.277	808	21	1	1	808	1	807	0.0	1610
MS.gene41144.t1	MTR_7g096060	73.362	687	135	7	117	767	14	688	0.0	990
MS.gene41144.t1	MTR_6g059690	69.186	688	155	8	126	796	28	675	0.0	917
MS.gene41144.t1	MTR_7g078570	72.222	648	146	9	126	767	23	642	0.0	916
MS.gene41144.t1	MTR_1g044600	64.161	572	114	7	126	696	23	504	0.0	695
MS.gene41144.t1	MTR_0376s0020	76.404	445	87	4	320	762	1	429	0.0	686
MS.gene41144.t1	MTR_3g115110	49.115	452	213	6	320	758	249	696	1.06e-143	440
MS.gene41144.t1	MTR_2g438140	47.403	462	225	10	320	771	226	679	4.69e-132	409
MS.gene41144.t1	MTR_7g010800	46.383	470	234	10	302	760	189	651	7.09e-131	405
MS.gene41144.t1	MTR_4g094662	48.009	452	218	8	320	760	229	674	7.78e-131	406

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41144.t1	AT1G07510	74.056	821	192	9	1	808	1	813	0.0	1187
MS.gene41144.t1	AT2G29080	72.805	820	197	13	1	808	4	809	0.0	1134
MS.gene41144.t1	AT1G50250	48.894	452	214	7	320	758	259	706	2.75e-142	437
MS.gene41144.t1	AT5G42270	48.451	452	216	7	320	758	247	694	2.32e-138	426
MS.gene41144.t1	AT5G15250	47.095	482	234	12	302	772	204	675	6.27e-133	411
MS.gene41144.t1	AT2G30950	48.156	461	221	10	320	770	224	676	1.67e-132	410
MS.gene41144.t1	AT2G30950	48.156	461	221	10	320	770	224	676	1.67e-132	410
MS.gene41144.t1	AT2G30950	48.156	461	221	10	320	770	224	676	1.67e-132	410
MS.gene41144.t1	AT2G30950	48.156	461	221	10	320	770	228	680	2.41e-132	410
MS.gene41144.t1	AT1G06430	47.939	461	222	9	320	770	217	669	1.26e-131	408

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Find 212 sgRNAs with CRISPR-Local

Find 408 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATGCGATGAAGCCTA+GGG	0.607666	4.1:-36219210	None:intergenic
AAAACGCCCAGGCCTAAGTA+AGG	0.525242	4.1:-36222398	None:intergenic
AAAAGAAGTACTTCACCAAG+AGG	0.634314	4.1:+36223942	MS.gene41144:CDS
AAACATAAACTTAACTATGT+GGG	0.552385	4.1:-36224126	None:intergenic
AAACCATACAGCCAAGATAC+TGG	0.468991	4.1:+36223805	MS.gene41144:CDS
AAACCCATTATTACGAGCTA+TGG	0.521150	4.1:-36219149	None:intergenic
AAACTATCTCACCCCATTGT+TGG	0.420910	4.1:+36219864	MS.gene41144:CDS
AAACTTGTTTCAGGAAGCAA+GGG	0.582841	4.1:+36222180	MS.gene41144:CDS
AAAGCAACTGCAGGGGAGTC+TGG	0.399715	4.1:+36222085	MS.gene41144:CDS
AAAGTAACTATTGTTCCTCG+CGG	0.694758	4.1:+36223251	MS.gene41144:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACTTCATCTCATTCAATG+TGG	-	chr4.1:36220291-36220310	None:intergenic	30.0%
AAAGCTCGAATATGTAATAC+GGG	+	chr4.1:36220575-36220594	MS.gene41144:intron	30.0%
AACTTCATCTCATTCAATGT+GGG	-	chr4.1:36220290-36220309	None:intergenic	30.0%
AAGAGGTGAGTAAACAAAAT+TGG	-	chr4.1:36223404-36223423	None:intergenic	30.0%
AATACTCATGTTTCTTGTCT+AGG	+	chr4.1:36223136-36223155	MS.gene41144:intron	30.0%
ACATATCTTAGGAAAGATGA+AGG	-	chr4.1:36221024-36221043	None:intergenic	30.0%
AGCAACGAATAAAAGAAAAG+AGG	-	chr4.1:36223421-36223440	None:intergenic	30.0%
AGCCTTCATATTATTCTCAA+AGG	+	chr4.1:36222509-36222528	MS.gene41144:CDS	30.0%
AGTCGTGGAATATTTAACAT+TGG	+	chr4.1:36221674-36221693	MS.gene41144:CDS	30.0%
ATTGAGAGAAAACATGTTGT+TGG	-	chr4.1:36219640-36219659	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	36218900	36224134	36218900	ID=MS.gene41144
chr4.1	mRNA	36218900	36224134	36218900	ID=MS.gene41144.t1;Parent=MS.gene41144
chr4.1	exon	36218900	36218950	36218900	ID=MS.gene41144.t1.exon1;Parent=MS.gene41144.t1
chr4.1	CDS	36218900	36218950	36218900	ID=cds.MS.gene41144.t1;Parent=MS.gene41144.t1
chr4.1	exon	36219034	36219256	36219034	ID=MS.gene41144.t1.exon2;Parent=MS.gene41144.t1
chr4.1	CDS	36219034	36219256	36219034	ID=cds.MS.gene41144.t1;Parent=MS.gene41144.t1
chr4.1	exon	36219363	36219434	36219363	ID=MS.gene41144.t1.exon3;Parent=MS.gene41144.t1
chr4.1	CDS	36219363	36219434	36219363	ID=cds.MS.gene41144.t1;Parent=MS.gene41144.t1
chr4.1	exon	36219800	36219939	36219800	ID=MS.gene41144.t1.exon4;Parent=MS.gene41144.t1
chr4.1	CDS	36219800	36219939	36219800	ID=cds.MS.gene41144.t1;Parent=MS.gene41144.t1
chr4.1	exon	36221269	36221739	36221269	ID=MS.gene41144.t1.exon5;Parent=MS.gene41144.t1
chr4.1	CDS	36221269	36221739	36221269	ID=cds.MS.gene41144.t1;Parent=MS.gene41144.t1
chr4.1	exon	36221923	36222690	36221923	ID=MS.gene41144.t1.exon6;Parent=MS.gene41144.t1
chr4.1	CDS	36221923	36222690	36221923	ID=cds.MS.gene41144.t1;Parent=MS.gene41144.t1
chr4.1	exon	36223158	36223385	36223158	ID=MS.gene41144.t1.exon7;Parent=MS.gene41144.t1
chr4.1	CDS	36223158	36223385	36223158	ID=cds.MS.gene41144.t1;Parent=MS.gene41144.t1
chr4.1	exon	36223661	36224134	36223661	ID=MS.gene41144.t1.exon8;Parent=MS.gene41144.t1
chr4.1	CDS	36223661	36224134	36223661	ID=cds.MS.gene41144.t1;Parent=MS.gene41144.t1

Gene Sequence

>MS.gene41144

ATGATTTTTTCAAGAATTGGGCGTTCTCTATCGCGTTCTTCTCGCGTTAAAGTAAGCTTTTTTTCCCATCAATTTGATTCGTTAATTCACGAAAGATTATAACTTTATTAATGATTTTTAATTGGGTCATGTAGAATTTGTTGCACGGTGAAGCAAGATTGGGAACGCTTTATGGAGTTTCGAGAACGAATGTTTTTATCGATGATGTTGAAAATGGATTAGGGTTTTTAAGGGGTTATGTATCTTCTGCCATAGCTCGTAATAATGGGTTTGCTTCAAATTTGTATGATTTTAAATCAATTGCTGCAAACCCTAGGCTTCATCGCATGTTTTCGAGCGAATCCCCAAAGAAAAAGAGTAAGTTAGGGTTTCATTGTTGTTGTTATGTCTTAATTTTGATGAAATTGGGAAAATGGGTTTTTGTTATTTTAGCTATTAAGCTCGTATTTCTTGTTTTTGACAGATTATGAAAAGTTTTATCCCAAGGAAAAGAAGGAAGTGCCAAAGGGAGAGGAGAAAAAATCTGAGTCTAAAGGTAATGAAATGAAATGAAATGAAATGTGTCATTGTATCTTGTGTTATTGTTAGTTGTGGTCATAGCTGATGTGATGAGAAGTGTGTTACTCATGATGAAGATTTTCTATGATTTTATATGTGAATTACTCTCAATTAGTGTTGGGTTCACACTTAAATTACAACTTCACTGTAGACTAGATTCTGAAGAACATCTTAGAATCCCAACAACATGTTTTCTCTCAATCATATGATTTTGGTCTGTACTGGTTTAATTTTGAGGTATTTATATGTGTGGGGGAATTAATCATGCATCTGCATTCCAGTTTGTCTTGCGATAAATGGGGTACCAGCAGCAATTTTTAACACTTATTGCTTTGATTTCAGATGAGTCAAAGTCAAACACAGAGGATGGAGGAAGTTTTCACGAAGCTTTTATCAAACAGTTTCAAAACTATCTCACCCCATTGTTGGTGGTGGGACTATTTCTTTCATCCCTTTCTCTTGGTCCTCGTGATCAGCAGCAGGTAAGCATAACTTCAAATATATTGCAAGGTCCGGTTGTTATTTTAATTTTCTTATGTGGGGGGAGGGGAGTACGTTTGAGTTGAGGACATGAGATCTATAAATATCCGTGTTCGACATTGTTTGAGTTAAGAGTCCTACACTGGATTAGATAAGGCCTTAAACATAAGTTTACAAGTCAGGGCAATTTTCTAGACAGTTTTGTAAGGTTGATTTAAGCCCAACCCAAATTCTAAGATAGCATCAGAGTCTGTCCAAGATCCGCGGGCACCTGCACTCAGGTCACCGTTTTGGGCCACTCTGGTCACGCTAGTCGTAGGCGCCGTAAAGGTGTGAGTGTGTTAAGGGCCCCACATTGAATGAGATGAAGTTTGAACATAAGTTTATAAGTGAGGGAAGTTATCACCTTACTGACCAGTTTTGTAAGGATGAGTTAAACCCAACCCATATTCTAAGGCTAGATGTTACTGCTTGACTATAATTTTCCGATTGAAAATTGAATATCGATGAGATGAGCTTTATGCTTCTATTATTGACAGCTTTTATTGAAGATCCATTACACAAGAATACTATTAGAATATATTTGAGATTTTTATTTTCCATGTTTTTGCTTGCTTGGTATTGACATTTCACCTATAAAGCTCGAATATGTAATACGGGTGTGATACGGTCTAGATACAAACAAAATTGTTATAAAAAAAATTATTTACATGTAGAAATTAGAATACTATAATGATCAAAATTTACAATAAAAATTGTGATGTTAACAAATAGTGTAGAGTTTTTGTCTAAATCATGATATATTTTAATCCCTATGTTAAGATATCAACAAAAGCATCATTAAAAGAACTCAGAACAAGTCCCGTCTCTGCAATAGCCAGCCAACAATTCACAACCATTTTGAATAACTTAGCTTATTCATTCAGTCTATTCTCCTCACATTACCATCACCCATAAAAAAACATGATTTTCAAGTCTGGTTCATTAAGAGACAACTATACCAATTCAAGAAGTCCAACATTATCTTGAACTGTTTTATGTACTTCTCCACTGATGTCCTACAACTGTCTCACATTTTTATACCCTTCATCTTTCCTAAGATATGTATCTGCATATTTGGGATTTTTATTTTATTTTTTATAAAAAAAATATAACAATTTTGATACGTCTAGGTTACGTATCCATGTGAGTATTGGTATCCAATATGTGAGCCTTTGAATTGAACCACACGTCTCTTAGCAATGAGATGACTCTACATTTTGTCTGGCTTTTTATAGTTTATTTAACTATTATCATATTGCTAATGTGGATCATAATTTGATTCTCTGCAGATTAGTTTCCAGGAGTTTAAAAATAAGCTTTTGGAACCAGGATTAGTAGACCATATTGTTGTCTCCAACAAATCAGTTGCCAAAATATATGTGAGGAACTCTCCCCTTAATCAAGCAGACAGCGAAGTCCAAGGAACCCTTCCTGCAAAGGGATCTGGTGGCCAATTTAAATATATAATCAATATTGGAAGTGTTGAGTCTTTTGAGGAGAAGTTAGAGGAAGCGCAAGAAGCACTAGGCGTTGACTCTCACAATTTTGTACCTGTTACATATTCTTCTGAAATGGTTTGGTACCAGGAGTTAATGAGATTTGCGCCAACCCTGTTGCTTTTGGGAACTCTCTGGTTTATGGGAAGGAAAATGCAAGGTGGATTTGGTGTTGGTGGTGGCTCCACTGGTAAGGGTAGTCGTGGAATATTTAACATTGGAAAAGCACATGTTACTAAAGTAGACAAAAATACCAAAAACAAGGTTGGTGATTTATTCTTCATGAATTGGCTAATATTTTTTTATTTGTTTTTTTATCAACATTTCCCCTAGTTGATCATTGCCTTTCCCATGTCCACTTTTTCTTTAGGGAGTTGTGGTGCTGAATAGATTCAGTGTTAAGTTCATTTAAGAGAATATGTTTCTTATTTGAATTCATTTGTTCAGGTTTATTTTAAAGATGTTGCTGGCTGTGAGGAGGCAAAGCAAGAAATTATGGAGTTTGTGCACTTCCTCAAGAATCCTAAGAAATACGAAGAGCTTGGTGCCAAAATTCCAAAAGGTGCTCTTCTGGTGGGACCCCCAGGCACAGGAAAAACCCTTTTAGCAAAAGCAACTGCAGGGGAGTCTGGTGTGCCATTTCTTTCCATATCTGGTTCTGATTTCATGGAAATGTTTGTCGGTGTTGGACCATCCAGGGTGAGAAACTTGTTTCAGGAAGCAAGGGCGTGTGCTCCCAGTATAGTATTTATTGATGAGATTGATGCAATTGGTCGGAAAAGGGGTCGTGGAGGTTTCTCTGGTTCAAATGATGAGCGTGAAAGTACTTTAAATCAATTGTTGGTGGAAATGGATGGTTTTGGAACCACTGCTGGAGTTGTTGTGCTAGCAGGTACAAATAGAGCTGATATATTAGACAACGCCTTACTTAGGCCTGGGCGTTTTGACCGCACGATATCAATTGATGTACCTGACATTAAAGGTCGTGACCAGATATTTCAGATTTATTTGAAAAAAATCAAACTTGACCACGAGCCTTCATATTATTCTCAAAGGCTTGCAGCCCTTACTCCAGGATTTGCTGGAGCAGACATTGCTAATGTTTGCAATGAAGCTGCTCTGATTGCTGCAAGGACTGATGAATCACAAGTCACAATGGATCATTTCGAGGCAGCTATCGATAGGATCATTGGTGGTTTGGAGAAGAAGAACAGGGTAGGCCTTTAAAAGCCTGTTTGTTTTTTATTTTTAAAAAAATACCTTTTTAAAATATAAAATGTTTTCTGGGTTTGGCTTGTTAAGCTGTTTAAAACAGTCGGATATTGAAAAATATAAACAAATTACTTATTCTTTGATAAGCTATTTTGACTGAAAAATATAGTGATATTATCAACTTTTTAATAAAAAAGTGCTCTTTATATTTGTTATTTAAAGAAATATTGCTTCTGTTTCACGTAAAATCTCCATAGAATTATTTTTTTGTAATTTACACATTCTAATAATCTTTTCAAAATTTTCTGTATCCCAATGCAGAAATAGTTTATCTTATGTTTTTTGTAATTTAAGACATCATGATGAGGAAAATTATATGCTACAATTATCTGAAGATTATTTGGATTGGTCACATTCCTTTTTTCAACTATTGATGATAGTCTCTAAAAATACTCATGTTTCTTGTCTAGGTAATAAGTAAGCTGGAAAGGCGTACTGTAGCTTACCATGAAGCAGGCCATGCTGTTGCAGGTTGGTTCTTGGAACATTGTGAGCCATTGTTGAAAGTAACTATTGTTCCTCGCGGCACAGCAGCTCTTGGGTTTGCCCAATATGTTCCAAGTGAGAACCTTCTCAGGACAAAGGAGCAGCTTTTGGATATGACTTGTATGACCCTTGGTGGTCGGGCTGCCGAGCAGGTTGTTTCATCATTTCCAATTTTGTTTACTCACCTCTTTTCTTTTATTCGTTGCTTTATACGATCTTTCTATTGAAATAATTCATTATATCTTGGTCGATTACTTATTTTGTTTCTCATTTGCAAATCTCATTATTTGCATAGTGTTAAATCTTTGATATACAGTTCCACAAAAAAAAAAAAAACACTGATATACACTCATACCTGCTCCTTGATGCTTCTCAATATTGTAAGTCATGAGATGAGAATGATGGTTTCTGTCCCTTTTTACGGCAGGTTCTCATTGGAGCAATCTCCACTGGAGCACAAAATGACTTGGAGAAAGTAACCAAGATGACATATGCCCAAGTAGCCATCTATGGTTTCAGTGAAAAAGTGGGCCTCCTCTCTTTCCCTCAAAATGACGAAGCGTTTGGGACCAAACCATACAGCCAAGATACTGGTGACATCATTGATAAGGAAGTGCGAGATTGGGTGAAAAGTGCATATGAACGTACCGTACAGCTTATAGAAGAACACAAGGAGAAAATAGCTCAAATTGCAGAGTTACTTCTCGAAAAAGAAGTACTTCACCAAGAGGACTTGGTTCGAATCTTGGGTGAGCGACCCTTCAAGAGTGCAGAACCCACAAATTACGATAGATTTAAGCTAGGGTTTCAAGATGAGGAGAAAGCTGCAGAAACCATTGTCGATGAAGCCGAAGAGGGTGATGGGTCTTCACCTCTAGAACCTGAGGTTGTTCCCACATAG

Protein sequence

>MS.gene41144.t1

MIFSRIGRSLSRSSRVKNLLHGEARLGTLYGVSRTNVFIDDVENGLGFLRGYVSSAIARNNGFASNLYDFKSIAANPRLHRMFSSESPKKKNYEKFYPKEKKEVPKGEEKKSESKDESKSNTEDGGSFHEAFIKQFQNYLTPLLVVGLFLSSLSLGPRDQQQISFQEFKNKLLEPGLVDHIVVSNKSVAKIYVRNSPLNQADSEVQGTLPAKGSGGQFKYIINIGSVESFEEKLEEAQEALGVDSHNFVPVTYSSEMVWYQELMRFAPTLLLLGTLWFMGRKMQGGFGVGGGSTGKGSRGIFNIGKAHVTKVDKNTKNKVYFKDVAGCEEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARACAPSIVFIDEIDAIGRKRGRGGFSGSNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRADILDNALLRPGRFDRTISIDVPDIKGRDQIFQIYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARTDESQVTMDHFEAAIDRIIGGLEKKNRVISKLERRTVAYHEAGHAVAGWFLEHCEPLLKVTIVPRGTAALGFAQYVPSENLLRTKEQLLDMTCMTLGGRAAEQVLIGAISTGAQNDLEKVTKMTYAQVAIYGFSEKVGLLSFPQNDEAFGTKPYSQDTGDIIDKEVRDWVKSAYERTVQLIEEHKEKIAQIAELLLEKEVLHQEDLVRILGERPFKSAEPTNYDRFKLGFQDEEKAAETIVDEAEEGDGSSPLEPEVVPT