AlfalfaGEDB | MS.gene064818

M. sativa cultivar XinJiangDaYe / MS.gene064818

KEGG: K03798
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005488 GO:0005524 GO:0005575 GO:0006508 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0016020 GO:0016787 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043170 GO:0044238 GO:0070011 GO:0071704 GO:0097159 GO:0097367 GO:0110165 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00004.32 PF01434.21 PF17862.4

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene064818.t1	XP_013462252.1	99.2	707	5	1	1	707	1	706	0.00E+00	1216.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene064818.t1	Q9BAE0	99.7	707	1	1	1	707	1	706	0.0e+00	1215.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene064818.t1	A0A072V376	99.2	707	5	1	1	707	1	706	0.0e+00	1216.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene064818	0.872153	3.96E-67	-1.69E-46
MS.gene049173	MS.gene064818	0.818809	1.61E-52	-1.69E-46
MS.gene049217	MS.gene064818	0.827623	1.41E-54	-1.69E-46
MS.gene049222	MS.gene064818	0.861063	1.33E-63	-1.69E-46
MS.gene049232	MS.gene064818	0.816579	5.14E-52	-1.69E-46
MS.gene049285	MS.gene064818	0.851928	6.44E-61	-1.69E-46
MS.gene049320	MS.gene064818	0.843625	1.25E-58	-1.69E-46
MS.gene049369	MS.gene064818	0.814505	1.49E-51	-1.69E-46
MS.gene04939	MS.gene064818	0.80272	4.91E-49	-1.69E-46
MS.gene049396	MS.gene064818	0.803503	3.38E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene036929	MS.gene064818	PPI
MS.gene064818	MS.gene46376	PPI
MS.gene064818	MS.gene78458	PPI
MS.gene064818	MS.gene004015	PPI
MS.gene064818	MS.gene45242	PPI
MS.gene064818	MS.gene021716	PPI
MS.gene064818	MS.gene69343	PPI
MS.gene064818	MS.gene41649	PPI
MS.gene064818	MS.gene015346	PPI
MS.gene064818	MS.gene023188	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene064818.t1	MTR_3g115110	99.434	707	3	1	1	707	1	706	0.0	1416
MS.gene064818.t1	MTR_3g115110	95.652	322	13	1	1	322	1	321	0.0	556
MS.gene064818.t1	MTR_3g115110	100.000	192	0	0	516	707	308	499	4.25e-124	379
MS.gene064818.t1	MTR_2g438140	51.801	583	264	9	125	697	93	668	0.0	551
MS.gene064818.t1	MTR_4g094662	51.453	585	264	9	125	697	96	672	0.0	547
MS.gene064818.t1	MTR_7g010800	50.685	584	265	9	129	699	81	654	0.0	547
MS.gene064818.t1	MTR_2g438140	55.375	493	204	8	125	607	153	639	2.86e-171	506
MS.gene064818.t1	MTR_7g096060	48.163	490	232	8	213	697	207	679	5.57e-148	447
MS.gene064818.t1	MTR_6g059690	44.788	518	253	9	184	697	148	636	1.90e-145	440
MS.gene064818.t1	MTR_4g064350	49.115	452	212	6	250	697	320	757	2.80e-143	439

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene064818.t1	AT5G42270	83.708	712	103	7	1	707	1	704	1125
MS.gene064818.t1	AT1G50250	83.051	708	102	8	13	707	14	716	1093
MS.gene064818.t1	AT2G30950	53.688	583	254	7	125	697	94	670	573
MS.gene064818.t1	AT2G30950	53.688	583	254	7	125	697	90	666	573
MS.gene064818.t1	AT2G30950	53.688	583	254	7	125	697	90	666	573
MS.gene064818.t1	AT2G30950	53.688	583	254	7	125	697	90	666	573
MS.gene064818.t1	AT1G06430	53.345	583	256	7	125	697	83	659	566
MS.gene064818.t1	AT1G06430	53.345	583	256	7	125	697	83	659	566
MS.gene064818.t1	AT1G06430	53.345	583	256	7	125	697	83	659	566
MS.gene064818.t1	AT5G15250	50.850	588	259	11	125	697	92	664	542

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Find 195 sgRNAs with CRISPR-Local

Find 344 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCACTGTAACGCCAC+TGG	0.556644	3.4:-98504658	None:intergenic
AAAAGGTGAGACCACCAGCT+TGG	0.566732	3.4:-98506830	None:intergenic
AAAATTGCCAGGAGAACCCC+AGG	0.546251	3.4:+98506438	MS.gene064818:CDS
AAAATTGGACAGGTTGCCAT+CGG	0.590434	3.4:+98507735	MS.gene064818:CDS
AAACCCGCAAATGCAAGGAA+CGG	0.672336	3.4:-98504896	None:intergenic
AAAGACATTGTTGGCAAGGG+CGG	0.615035	3.4:+98505177	MS.gene064818:CDS
AAAGCAGAATCAAGAACATC+AGG	0.467318	3.4:-98505484	None:intergenic
AAAGGTGAAGTTGAATTTGC+GGG	0.411411	3.4:-98504566	None:intergenic
AAATCCATTCTTGGGACAAC+AGG	0.462302	3.4:+98507770	MS.gene064818:CDS
AAATTGCCAGGAGAACCCCA+GGG	0.788705	3.4:+98506439	MS.gene064818:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATCAACAAGGAATACACA+TGG	-	chr3.4:98506730-98506749	None:intergenic	30.0%
AAGAAATTAGTAGCCTATCA+TGG	+	chr3.4:98506618-98506637	MS.gene064818:CDS	30.0%
AAGATATCTATTATACCTCG+TGG	+	chr3.4:98506807-98506826	MS.gene064818:CDS	30.0%
ACCTGATTACTAAAACTATG+AGG	-	chr3.4:98507916-98507935	None:intergenic	30.0%
ACGAGGTATAATAGATATCT+TGG	-	chr3.4:98506808-98506827	None:intergenic	30.0%
AGTCTCCAAATTTACGAAAT+AGG	+	chr3.4:98507155-98507174	MS.gene064818:intron	30.0%
ATAATAGATATCTTGGCTAC+AGG	-	chr3.4:98506801-98506820	None:intergenic	30.0%
ATAGAGAAAGAAACAGTTGA+TGG	+	chr3.4:98508324-98508343	MS.gene064818:CDS	30.0%
ATCGATATTCTAGCAATGAA+CGG	+	chr3.4:98504803-98504822	MS.gene064818:CDS	30.0%
CTTATCATCTATGTTTACTC+CGG	+	chr3.4:98504472-98504491	MS.gene064818:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	98504284	98508401	98504284	ID=MS.gene064818
chr3.4	mRNA	98504284	98508401	98504284	ID=MS.gene064818.t1;Parent=MS.gene064818
chr3.4	exon	98504284	98505582	98504284	ID=MS.gene064818.t1.exon1;Parent=MS.gene064818.t1
chr3.4	CDS	98504284	98505582	98504284	ID=cds.MS.gene064818.t1;Parent=MS.gene064818.t1
chr3.4	exon	98506393	98506639	98506393	ID=MS.gene064818.t1.exon2;Parent=MS.gene064818.t1
chr3.4	CDS	98506393	98506639	98506393	ID=cds.MS.gene064818.t1;Parent=MS.gene064818.t1
chr3.4	exon	98506754	98506937	98506754	ID=MS.gene064818.t1.exon3;Parent=MS.gene064818.t1
chr3.4	CDS	98506754	98506937	98506754	ID=cds.MS.gene064818.t1;Parent=MS.gene064818.t1
chr3.4	exon	98507620	98507791	98507620	ID=MS.gene064818.t1.exon4;Parent=MS.gene064818.t1
chr3.4	CDS	98507620	98507791	98507620	ID=cds.MS.gene064818.t1;Parent=MS.gene064818.t1
chr3.4	exon	98508180	98508401	98508180	ID=MS.gene064818.t1.exon5;Parent=MS.gene064818.t1
chr3.4	CDS	98508180	98508401	98508180	ID=cds.MS.gene064818.t1;Parent=MS.gene064818.t1

Gene Sequence

>MS.gene064818

ATGGCCTTCTCCACCTCTTCTTTACTTTCTACAAACTTCTTAGGAGCAAGAAACATTCCAACCCCCAAAACAACCAAACCTTCTATTTCACTACCATTATTCTTCAAAACTAAATTCTTCAACTCTCAAAATGACAACAACAACAATAATTCAGAACCTATTAAATCAGCTGCTGTATCAGCTCTTATCTTATCATCTATGTTTACTCCGGCGGCACTCGCCGCCGACAACCTCCCACCACCACCACCACCTGTACTCGAAGCTCAACCAAACCAACTAAACCCCGCAAATTCAACTTCACCTTTCTCTCAAAACATTTCACTCACAGCACCAAAACCACAAGCACAATCCTCCACTGATCTTCCCGATGGTAGCCAGTGGCGTTACAGTGAGTTTTTAAACGCAGTAAAAAAGGGTAAAGTTGAACGAGTTAGGTTCAGTAAAGACGGTTCTGTCCTTCAACTAACCGCCGTTGATGGCCGGAGAGCCAACGTTATCGTTCCCAACGACCCTGACCTTATCGATATTCTAGCAATGAACGGCGTTGATATTTCCGTTTCCGAAGGTGAACAAGGTAACGGTTTGTTCAGTTTCGTTGGTAGTTTATTGTTACCGTTCCTTGCATTTGCGGGTTTGTTCTTGATTTTCCGTAGAGGTCAAGGAGGACCTGGTGGGCCTGGTGGGCTTGGCGGGCCTATGGATTTCGGTAGATCGAAATCGAAATTCCAGGAAGTACCGGAGACTGGAGTAACTTTTGCAGATGTGGCCGGTGCTGATCAAGCGAAATTGGAGCTACAAGAAGTTGTTGATTTCTTGAAGAATCCTGATAAGTACACTGCTTTAGGTGCTAAGATTCCTAAAGGATGTCTTTTAGTGGGGCCACCTGGAACTGGAAAGACATTGTTGGCAAGGGCGGTGGCCGGTGAAGCCGGTACACCGTTCTTTTCGTGTGCAGCTTCGGAGTTTGTGGAACTGTTTGTGGGAGTTGGTGCTTCTAGGGTTAGGGATTTGTTTGAGAAGGCGAAGTCAAAGGCGCCTTGCATTGTGTTTATTGATGAGATTGATGCTGTTGGGAGACAGAGAGGAGCTGGTCTTGGTGGTGGGAATGATGAGAGGGAACAGACTATTAATCAGCTTTTGACTGAGATGGATGGATTTTCGGGTAATTCTGGTGTTATTGTTTTGGCTGCTACTAATAGACCTGATGTTCTTGATTCTGCTTTGCTTAGACCTGGAAGGTTTGATAGACAAGTTACTGTTGATAGACCTGATGTTGCCGGTAGAGTTAAAATCCTTCAGGTGAATGAGTCCGAAACTTTTAACTATCTCACAGTCAGTTTATTTTATGAGGAATTTTTTTGAAATAAATAAAGATCCTAGTGTGTGTCTTGTTTTGTTGTCAGCAACAAGGTTTTAAATTGCATTTGTGCCACAATTCTTAAAATTGCATAGAATCTAAAATGCAGCTGATGCAATCTCAAATGTGGTTGCGGATATATCAAAAATAATGATGTTCAACCCAAATTACATTTGCAAACCTTTTTTTAGAACCCCTATTGACACGCCTCAATGATTGTTTCATCGGTGGTGGCTAGTAGTTTAGGTTTTTAGAGGTTAAAGTTGAGGAACACATGCATGTGTGCATTAGTACTTAGTACTCATGTAGACTACAAGGTTTTAAATTGCACTAGCATTGCATGAAATCGTAGTTAAATGCAGCTGGTGCAACCTCAAATGTGTTTGCAACTTTGCATATATATATATAACCACAAAGTCACAGTCCATATTGACACACCTCAACGCTTGTTTCATTGGGGGTTAGTAGTTTTAGTTTTCCCGGTTTAAGGTCGACGAATGTGTGCACACTGCATACAGTTAGTACTCCTGTAGATTTGAGTCTCACATTACTCAATGCTCTTTTTGCAATAGTGTATGTTTAATTGAGTAGGTGGAATTGAAAATTTCTGAATGTTCTTTTTGTCTAATTTTTGAAATATTATGGTAATGATAACCTTGATTGCATACAGGTTTGTTTGGAGGTGTTTGAATTAGTTATGCTGTGTGCCACTCTGTTTCTAAATTATTCTGATTCTTCTTCTTCTCTATCAGGTGCATTCTAGAGGAAAAGCACTTGCAAAGGATGTTGACTTTGACAAAATTGCCAGGAGAACCCCAGGGTTCACAGGAGCTGATCTGCAGAATCTGATGAACGAAGCAGCTATTCTTGCTGCCAGGCGTGACCTCAAAGAAATAAGTAAAGATGAGATAGCTGATGCGCTTGAAAGGATCATTGCTGGACCAGAAAAGAAAAATGCCGTTGTCTCAGAAGAGAAGAAGAAATTAGTAGCCTATCATGGTATTTATTATTATTATTATTATTATTGTTTTTTATGTCTAGTATCCAAGCTTGGCATTTGTTTGTTCATTTTTGGATTCCTAATCACCATGTGTATTCCTTGTTGATTTTCAGAGGCTGGCCATGCTTTAGTGGGTGCTTTGATGCCTGAATATGACCCTGTAGCCAAGATATCTATTATACCTCGTGGCCAAGCTGGTGGTCTCACCTTTTTTGCTCCTAGCGAAGAGAGGCTTGAGTCTGGATTGTACAGTAGAAGCTACTTGGAGAATCAGATGGCGGTTGCACTTGGAGGAAGGTCAGTGTACCATGCATTACACAGAAATTTGCACACTGTATTACCTTATTGAATTTAGATCTCAACTTTTGCAACTTGCAAGTTACTCTTGCATCACAATTACATACCACCTGTCAGTTGGCTGCTTGGCTTATAGCCTAGGGGATACATAAGGACAGTTTTTTTTTACTAGCAAATCAACATTCCGGTCCTCGAAAGTGTAATGGTCGGTCAATTTAGTCTCCAAATTTACGAAATAGGAAATTAGTCCTTTAAATTAAAGAGCATCAAAATCAATTCGGCCCCTCGATTAAAATATCTCTTTAGTTAACATCCATCAAAATCAATGAAAGATCTTCAAATTGATCTGACTTGAATAGTCTCTTGTTGCATCAAGAGATAAACATAAAACCTCTAAAATTGTAGTGTTAGATTTAGAAAAAAAAGGACTAAGCTGACTGATATTATTCAATTTAAGGGACTACATTACTTTTTTTTCGTTAATTTGAACTGACCGACCTTACAATATCAAGGACGAAAATACTGATCTACTTGTTTTACGACTGGCTATTTTGTTGTTGTATACTTTTAATGGGAATAGTGATAGTCATATTATGGAAGTGAGATGCAGGATCTTATCTTTTAGCTTTGAGCCTGTATATATTATGTCATAAATTCCTTATCTTTGTATATGTCAAAACAGGGTTGCCGAAGAGGTTATTTTTGGCCAGGATAATGTCACCACTGGGGCGTCAAATGACTTCATGCAAGTTTCACGAGTGGCGAGACAGATGGTTGAGAGATTTGGGTTCAGCAAAAAAATTGGACAGGTTGCCATCGGCGGGGGTGGTGGAAATCCATTCTTGGGACAACAGGTAGGCCCTAACCTAACATAGGTTGATGAGGAATTGTTCCTCATTTTTTTAATTTCCTTTTACTATAGTTTTGAGAATATTAGTATATTCTCTATATTAGTATATGATATTTACTAAAACACCTCATAGTTTTAGTAATCAGGTAACATGTGCAACATTGCACATGTTAAAACAACTAATAATAGTAACTTTTTTTTGGAAAACAATAATAATTTATTCAATAGTTTTATATTTTATATAAATGTACAAGTTCCAATACAAAATTTTTATTTTGAACTTCTTAACATGTGCAAATTTGCACATGATAGAAAAACCCTTGTTTTATTTTACTTGGTAAATTGAACCTCCCAAAATAAATTCCTCACCATTCTCAAAATTGTGATTGCAGATGTCTTCACAAAAGGATTATTCCATGGCAACTGCTGATATAGTGGATAAGGAAGTTAGAGAACTGGTAGACAAAGCATATGAGAGGGCAACACAAATTATCAACACTCACATTGACATCCTTCACAAGCTTGCTCAACTTCTCATAGAGAAAGAAACAGTTGATGGTGAAGAGTTCATGAGTCTATTCATTGATGGAAAAGCTGAATTGTATGTTTCATAA

Protein sequence

>MS.gene064818.t1

MAFSTSSLLSTNFLGARNIPTPKTTKPSISLPLFFKTKFFNSQNDNNNNNSEPIKSAAVSALILSSMFTPAALAADNLPPPPPPVLEAQPNQLNPANSTSPFSQNISLTAPKPQAQSSTDLPDGSQWRYSEFLNAVKKGKVERVRFSKDGSVLQLTAVDGRRANVIVPNDPDLIDILAMNGVDISVSEGEQGNGLFSFVGSLLLPFLAFAGLFLIFRRGQGGPGGPGGLGGPMDFGRSKSKFQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGTPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFDKIARRTPGFTGADLQNLMNEAAILAARRDLKEISKDEIADALERIIAGPEKKNAVVSEEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGQDNVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGGGGNPFLGQQMSSQKDYSMATADIVDKEVRELVDKAYERATQIINTHIDILHKLAQLLIEKETVDGEEFMSLFIDGKAELYVS