AlfalfaGEDB | MS.gene35176

M. sativa cultivar XinJiangDaYe / MS.gene35176

KEGG: K03798
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005488 GO:0005524 GO:0005575 GO:0006508 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0016020 GO:0016787 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043170 GO:0044238 GO:0070011 GO:0071704 GO:0097159 GO:0097367 GO:0110165 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00004.32 PF01434.21 PF06480.18 PF17862.4

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35176.t1	XP_013457362.1	99.4	694	4	0	1	694	1	694	0.00E+00	1291.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35176.t1	Q655S1	87.1	651	83	1	44	693	25	675	0.0e+00	1098.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35176.t1	A0A072UQU8	99.4	694	4	0	1	694	1	694	0.0e+00	1291.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049217	MS.gene35176	0.800512	1.39E-48	-1.69E-46
MS.gene04938	MS.gene35176	0.833972	3.92E-56	-1.69E-46
MS.gene04939	MS.gene35176	0.84531	4.40E-59	-1.69E-46
MS.gene050675	MS.gene35176	0.827851	1.24E-54	-1.69E-46
MS.gene050699	MS.gene35176	0.819836	9.42E-53	-1.69E-46
MS.gene051336	MS.gene35176	0.848189	7.18E-60	-1.69E-46
MS.gene052615	MS.gene35176	0.801137	1.04E-48	-1.69E-46
MS.gene053480	MS.gene35176	0.833193	6.14E-56	-1.69E-46
MS.gene053632	MS.gene35176	0.830704	2.53E-55	-1.69E-46
MS.gene053824	MS.gene35176	0.804729	1.88E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene017626	MS.gene35176	PPI
MS.gene021142	MS.gene35176	PPI
MS.gene023188	MS.gene35176	PPI
MS.gene028717	MS.gene35176	PPI
MS.gene052921	MS.gene35176	PPI
MS.gene058940	MS.gene35176	PPI
MS.gene064818	MS.gene35176	PPI
MS.gene071196	MS.gene35176	PPI
MS.gene074343	MS.gene35176	PPI
MS.gene35176	MS.gene31288	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35176.t1	MTR_4g094662	99.424	694	4	0	1	694	1	694	0.0	1395
MS.gene35176.t1	MTR_2g438140	85.899	695	92	5	1	694	1	690	0.0	1150
MS.gene35176.t1	MTR_2g438140	86.278	583	75	4	1	582	61	639	0.0	965
MS.gene35176.t1	MTR_7g010800	72.313	614	164	4	67	678	46	655	0.0	902
MS.gene35176.t1	MTR_3g115110	51.031	582	271	6	96	672	124	696	0.0	550
MS.gene35176.t1	MTR_1g028390	50.000	450	203	4	230	677	330	759	2.39e-135	417
MS.gene35176.t1	MTR_7g096060	44.275	524	257	12	182	688	196	701	1.09e-134	412
MS.gene35176.t1	MTR_4g064350	47.788	452	218	8	229	674	320	759	6.19e-132	409
MS.gene35176.t1	MTR_6g059690	46.352	466	228	8	216	672	184	636	3.53e-131	403
MS.gene35176.t1	MTR_7g078570	44.556	496	241	11	188	672	159	631	4.21e-127	391

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene35176.t1	AT2G30950	85.652	690	81	9	1	684	1	678	1152
MS.gene35176.t1	AT2G30950	85.652	690	81	9	1	684	1	678	1152
MS.gene35176.t1	AT2G30950	85.652	690	81	9	1	684	1	678	1152
MS.gene35176.t1	AT2G30950	85.652	690	81	9	1	684	5	682	1151
MS.gene35176.t1	AT1G06430	84.180	689	86	7	1	684	1	671	1125
MS.gene35176.t1	AT1G06430	84.180	689	86	7	1	684	1	671	1125
MS.gene35176.t1	AT1G06430	84.180	689	86	7	1	684	1	671	1125
MS.gene35176.t1	AT5G15250	67.781	658	192	6	34	680	24	672	896
MS.gene35176.t1	AT5G15250	62.000	500	142	6	42	499	21	514	593
MS.gene35176.t1	AT5G42270	52.048	586	259	9	96	672	122	694	555

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Find 187 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTCGAATACGACATTC+TGG	0.396169	4.4:-19101316	None:intergenic
AAAGTTGATCTATATGAGAA+TGG	0.514012	4.4:+19101369	MS.gene35176:CDS
AAATGTCGGTGTTGGCTTGC+CGG	0.371592	4.4:+19101242	MS.gene35176:CDS
AAATTGCATTGACACAGATA+AGG	0.602585	4.4:+19103529	MS.gene35176:CDS
AAATTGTTGCTTGGAAATGT+CGG	0.619146	4.4:+19101228	MS.gene35176:CDS
AACAAGGTCTTTCCAGTTCC+TGG	0.294212	4.4:-19101849	None:intergenic
AAGAGCTTCTTCAGAAATTC+AGG	0.309999	4.4:+19101475	MS.gene35176:CDS
AAGCTGCTATATTAGCTGGT+CGG	0.645613	4.4:+19102445	MS.gene35176:CDS
AAGGAACATTAATGACCGAT+GGG	0.627659	4.4:+19102535	MS.gene35176:CDS
AAGGCTATTGCTGGTGAAGC+TGG	0.478309	4.4:+19101876	MS.gene35176:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACATCAGAAGAAGATAAGAA+AGG	-	chr4.4:19103314-19103333	None:intergenic	30.0%
CATTGAAGAAACCATATGAT+TGG	-	chr4.4:19103200-19103219	None:intergenic	30.0%
CTGAAATTCCAGTTGAAAAT+CGG	+	chr4.4:19103646-19103665	MS.gene35176:CDS	30.0%
GAACCTGATATAGAGAAAAA+CGG	-	chr4.4:19101906-19101925	None:intergenic	30.0%
GTTTCTTGAGTATTTGGATA+AGG	+	chr4.4:19101335-19101354	MS.gene35176:CDS	30.0%
TAATAGAACTACTCTTGGTA+AGG	+	chr4.4:19101080-19101099	MS.gene35176:CDS	30.0%
TATTGTTAGCATGAACCTTT+AGG	-	chr4.4:19102338-19102357	None:intergenic	30.0%
TCATAATGCTCAAGAAGATT+CGG	+	chr4.4:19101521-19101540	MS.gene35176:CDS	30.0%
TGAAATTCCAGTTGAAAATC+GGG	+	chr4.4:19103647-19103666	MS.gene35176:CDS	30.0%
TGCAATAAGATCCAATCATA+TGG	+	chr4.4:19103186-19103205	MS.gene35176:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	19101030	19103704	19101030	ID=MS.gene35176
chr4.4	mRNA	19101030	19103704	19101030	ID=MS.gene35176.t1;Parent=MS.gene35176
chr4.4	exon	19101030	19102217	19101030	ID=MS.gene35176.t1.exon1;Parent=MS.gene35176.t1
chr4.4	CDS	19101030	19102217	19101030	ID=cds.MS.gene35176.t1;Parent=MS.gene35176.t1
chr4.4	exon	19102294	19102607	19102294	ID=MS.gene35176.t1.exon2;Parent=MS.gene35176.t1
chr4.4	CDS	19102294	19102607	19102294	ID=cds.MS.gene35176.t1;Parent=MS.gene35176.t1
chr4.4	exon	19102776	19103016	19102776	ID=MS.gene35176.t1.exon3;Parent=MS.gene35176.t1
chr4.4	CDS	19102776	19103016	19102776	ID=cds.MS.gene35176.t1;Parent=MS.gene35176.t1
chr4.4	exon	19103363	19103704	19103363	ID=MS.gene35176.t1.exon4;Parent=MS.gene35176.t1
chr4.4	CDS	19103363	19103704	19103363	ID=cds.MS.gene35176.t1;Parent=MS.gene35176.t1

Gene Sequence

>MS.gene35176

ATGGCAGCATCATCAGCATGTCTTGTTGGTAATGCTTTATCCACACACAGTAATAGAACTACTCTTGGTAAGGATTTGAATGGAAGATATCTCTTTTCATCATGGAGATTTTCATCATTCAATAATAAGGCATCAAAATCATTTTCCATAAAAGCATCCTTAGACCAAAATCAACAGGAAGGAAGAAGAGGGATTCTGAAATTGTTGCTTGGAAATGTCGGTGTTGGCTTGCCGGCATTATTGGGAAATGGAAAAGCTTATGCTGCTGATGAACAAGGTTCATCCTCCAGAATGTCGTATTCGAGGTTTCTTGAGTATTTGGATAAGGATAGAGTTACCAAAGTTGATCTATATGAGAATGGAACCATAGCTATTGTTGAGGCTGTGTCTCCTGAATTGGGAAATAGGTTGCAGCGTGTTCGAGTTCAACTTCCTGGACTTAGCCAAGAGCTTCTTCAGAAATTCAGGGAAAAGAACATTGACTTTGCAGCTCATAATGCTCAAGAAGATTCGGGTTCTCTTTTGTTTAATCTTATTGGGAATCTTGCTTTCCCTGCTGCTGTCATTGGTGTATTGTTCCTTCTCTCGAGGCGGTCCGGTGGAATGGGAGGTCCCGGTGGACCTGGATTTCCTATGCAATTCGGCCAATCTAAAGCCAAGTTTCAAATGGAACCAAACACTGGAGTGACTTTTGATGATGTTGCTGGGGTGGATGAAGCCAAGCAGGATTTTATGGAGGTGGTTGAATTTCTCAAGAAGCCCGAGAGGTTCACTTCTGTTGGTGCTCGCATTCCAAAAGGAGTTCTTCTTGTTGGTCCTCCAGGAACTGGAAAGACCTTGTTAGCCAAGGCTATTGCTGGTGAAGCTGGTGTTCCGTTTTTCTCTATATCAGGTTCTGAGTTTGTCGAGATGTTTGTTGGTATTGGTGCTTCTCGTGTCCGTGACTTGTTCAAGAAGGCTAAAGAGAATGCTCCTTGCATTGTCTTTGTTGATGAAATTGATGCTGTGGGAAGACAAAGAGGGACTGGAATTGGTGGAGGGAATGACGAAAGAGAACAGACCCTCAACCAACTTTTGACAGAAATGGATGGATTCGAGGGAAATACCGGTGTCATTGTTGTTGCTGCAACTAACAGGGCCGACATTCTTGACTCTGCGTTATTGAGACCAGGCCGATTTGATAGACAGGTATGAATATGATTATATTACGGAATGCCTTATATGCTTATGAATGATTAAATTATTGATCGGAATGCTTTTGCAGGTATCGGTTGATGTTCCAGATGTAAGGGGAAGGACCGAAATCCTAAAGGTTCATGCTAACAATAAAAAATTTGATAATGATGTTTCTCTTGAAGTGATTGCAATGAGAACACCTGGTTTTAGCGGAGCTGATCTTGCAAATCTCTTGAATGAAGCTGCTATATTAGCTGGTCGGCGAGGAAGGACAGGGATTTCACCTAAAGAGATTGATGATTCTATTGATAGAATTGTCGCTGGAATGGAAGGAACATTAATGACCGATGGGAAGAGCAAAAGTTTAGTGGCGTATCATGAAGTTGGGCATGCCATTTGTGGGTAAGAAACTAGCTATCACTTCGTCTTTCACAAGTAGATATTGCGTAACATTGCAATGAAAGCAAGGTTTTGTGGTCTAAATGATATTGTGTTACTTAACATTAGAAGCTATTCCACTCTAAAAATTCCCACAGTTGTTTTGTAACATTTATTTGTACTTGGTTGCAGAACTTTGACTCCTGGTCATGATGCTGTACAAAAGGTGACATTAGTTCCTCGAGGTCAAGCTCGGGGTCTTACATGGTTCATTCCTTCCGATGACCCGACTCTGATCTCAAAACAACAACTCTTTGCAAGAATTGTTGGAGGATTAGGTGGTAGGGCTGCAGAAGAAATTATTTTTGGTGAGCCTGAGGTTACAACTGGTGCAGGTGGTGATTTGCAGCAAATCACCGGTATAGCAAGACAGGTAATTGTTCATTAGAATTCTGTGCCGCATCATATCTCCTATTTTTTCTTCCTTTTATTTTGTAGCATGAATAATTCTAACATATTTATAATCTGATTTCATTTTAGTAACATTTTATCTTTAGTCTAAGTTGTGTTGTTAGATACAACTACAATTAATTGGTGAGACTTGCAATAAGATCCAATCATATGGTTTCTTCAATGCCTTTAACTATTTTTTTTATTATTCTAATAGAAACAACGATGATGCAGATTTAGAAGGATCCTATTCCTTACGATAATATCTTTTGATTTTCCTTTCTTATCTTCTTCTGATGTCTATATAAATTTTAATGATACTCTTGCAGATGGTAGTCACATTTGGAATGTCTGATATTGGTCCTTGGTCACTTATGGACTCGTCAGCTCAAAGTGGCGATGTTATCATGAGAATGATGGCAAGGAACTCAATGTCAGAAAAGCTTGCGGAAGACATTGATACCGCTGTCAAGAGATTGTCAGATGAAGCATATGAAATTGCATTGACACAGATAAGGAACAACCGTGAGGCAATTGATAAGATTGTGGAAGTCCTTCTGGAGAAGGAGACGTTGAGTGGAGATGAATTCCGCGCTCTACTGTCAGAGTTTACTGAAATTCCAGTTGAAAATCGGGTTCCTCCTTCAACTCCAGTAGCAGTCCCTGTTTGA

Protein sequence

>MS.gene35176.t1

MAASSACLVGNALSTHSNRTTLGKDLNGRYLFSSWRFSSFNNKASKSFSIKASLDQNQQEGRRGILKLLLGNVGVGLPALLGNGKAYAADEQGSSSRMSYSRFLEYLDKDRVTKVDLYENGTIAIVEAVSPELGNRLQRVRVQLPGLSQELLQKFREKNIDFAAHNAQEDSGSLLFNLIGNLAFPAAVIGVLFLLSRRSGGMGGPGGPGFPMQFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTSVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGIGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGVIVVAATNRADILDSALLRPGRFDRQVSVDVPDVRGRTEILKVHANNKKFDNDVSLEVIAMRTPGFSGADLANLLNEAAILAGRRGRTGISPKEIDDSIDRIVAGMEGTLMTDGKSKSLVAYHEVGHAICGTLTPGHDAVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEIIFGEPEVTTGAGGDLQQITGIARQMVVTFGMSDIGPWSLMDSSAQSGDVIMRMMARNSMSEKLAEDIDTAVKRLSDEAYEIALTQIRNNREAIDKIVEVLLEKETLSGDEFRALLSEFTEIPVENRVPPSTPVAVPV