AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene42167

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene42167.t1 MTR_7g075453 96.429 420 12 2 1 419 1 418 0.0 785
MS.gene42167.t1 MTR_3g460780 45.307 309 166 3 20 326 29 336 2.05e-81 256
MS.gene42167.t1 MTR_5g098420 43.202 331 174 5 5 326 13 338 2.59e-81 256
MS.gene42167.t1 MTR_1g009950 42.857 175 96 2 1 172 1 174 2.01e-40 145
MS.gene42167.t1 MTR_2g437700 32.353 340 212 11 6 330 12 348 6.74e-37 139
MS.gene42167.t1 MTR_1g009940 37.288 177 107 2 1 174 1 176 1.85e-33 127
MS.gene42167.t1 MTR_1g009910 37.288 177 107 2 1 174 1 176 1.34e-32 124
MS.gene42167.t1 MTR_1g009920 36.250 160 96 3 1 155 1 159 7.49e-25 102
MS.gene42167.t1 MTR_2g090765 30.918 207 133 3 160 356 12 218 1.16e-20 90.9
MS.gene42167.t1 MTR_3g108760 30.723 166 110 2 6 171 9 169 3.17e-20 90.1
MS.gene42167.t1 MTR_4g059840 31.667 180 118 2 176 350 66 245 2.45e-19 88.2
MS.gene42167.t1 MTR_5g098060 33.889 180 105 6 182 355 47 218 3.26e-19 87.0
MS.gene42167.t1 MTR_7g101080 33.544 158 100 3 175 327 32 189 1.02e-18 85.5
MS.gene42167.t1 MTR_4g059790 30.556 180 120 2 176 350 66 245 1.08e-18 86.3
MS.gene42167.t1 MTR_4g053380 31.461 178 107 3 176 343 70 242 9.66e-16 77.8
MS.gene42167.t1 MTR_2g017950 32.948 173 92 5 170 326 61 225 2.64e-14 73.6
MS.gene42167.t1 MTR_8g087470 32.386 176 100 5 164 326 74 243 3.96e-14 73.2
MS.gene42167.t1 MTR_8g087460 32.386 176 100 5 164 326 74 243 4.51e-14 73.2
MS.gene42167.t1 MTR_4g059720 28.485 165 101 4 175 327 31 190 5.30e-13 68.9
MS.gene42167.t1 MTR_8g087450 31.447 159 94 3 174 322 68 221 2.75e-12 67.4
MS.gene42167.t1 MTR_2g093990 28.105 153 96 3 183 326 41 188 1.31e-11 64.7
MS.gene42167.t1 MTR_4g059780 29.480 173 105 4 168 328 73 240 2.10e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene42167.t1 AT3G60900 67.910 402 124 3 9 406 14 414 1.71e-176 499
MS.gene42167.t1 AT2G45470 63.415 410 144 5 11 419 16 420 5.71e-167 475
MS.gene42167.t1 AT4G12730 44.413 358 190 7 5 355 10 365 3.11e-88 273
MS.gene42167.t1 AT5G55730 43.354 316 174 4 16 329 20 332 2.43e-81 256
MS.gene42167.t1 AT5G55730 43.354 316 174 4 16 329 20 332 2.43e-81 256
MS.gene42167.t1 AT3G12660 50.323 155 76 1 14 168 17 170 2.07e-41 147
MS.gene42167.t1 AT2G24450 44.311 167 91 2 6 172 10 174 7.41e-35 130
MS.gene42167.t1 AT3G46550 30.678 339 202 12 22 332 30 363 1.51e-30 122
MS.gene42167.t1 AT4G31370 38.462 169 100 3 18 184 22 188 6.32e-27 109
MS.gene42167.t1 AT5G03170 36.571 175 103 4 175 341 28 202 2.30e-25 103
MS.gene42167.t1 AT2G20520 34.783 184 96 7 174 342 26 200 3.65e-19 86.7
MS.gene42167.t1 AT2G04780 32.468 154 95 4 181 328 44 194 4.98e-18 83.6
MS.gene42167.t1 AT2G04780 32.468 154 95 4 181 328 44 194 4.98e-18 83.6
MS.gene42167.t1 AT5G60490 32.886 149 95 3 183 326 39 187 5.44e-18 83.6
MS.gene42167.t1 AT1G03870 32.338 201 120 8 182 373 38 231 1.13e-16 79.7
MS.gene42167.t1 AT5G44130 31.214 173 102 5 182 342 35 202 2.54e-16 78.6

Find 141 sgRNAs with CRISPR-Local

Find 155 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGGATTTGTTTAACGGATT+TGG 0.248067 7.3:-30283298 None:intergenic
GTTGATTTCGTCGGCGAGTT+TGG 0.289968 7.3:-30282983 None:intergenic
GAGAATTGCTGATACGGTTT+TGG 0.305104 7.3:+30283752 MS.gene42167:CDS
TTTCAATCAACCGCTGATAA+AGG 0.322266 7.3:+30283480 MS.gene42167:CDS
TTTCGTCGGCGAGTTTGGTT+TGG 0.325132 7.3:-30282978 None:intergenic
GGAGAGGAAGGTGTTGTATT+GGG 0.325835 7.3:-30282956 None:intergenic
CAAGCTTTCGAATGCTGAAT+TGG 0.334644 7.3:+30283563 MS.gene42167:CDS
TTCGAAAGCTTGGTTAAATC+AGG 0.346934 7.3:-30283552 None:intergenic
GGTGTGAACGTGAAAGCTTC+TGG 0.365284 7.3:+30284029 MS.gene42167:CDS
GATGTTGTTGACGGCGTTGC+CGG 0.368716 7.3:-30283190 None:intergenic
GTGTTGTATTGGGAGTAGTC+GGG 0.377757 7.3:-30282946 None:intergenic
GGGAGAGGAAGGTGTTGTAT+TGG 0.383505 7.3:-30282957 None:intergenic
ATTGTAAGGGATTTGTTTAA+CGG 0.389662 7.3:-30283304 None:intergenic
TATTAAAGCGGTTAGGTTAA+CGG 0.391887 7.3:-30283397 None:intergenic
GCCGGAGCCGGAGGCGAAGC+TGG 0.399756 7.3:-30283927 None:intergenic
TGGTGGAGCGGTGAGGATAC+CGG 0.401642 7.3:-30283364 None:intergenic
GGTGTTGTATTGGGAGTAGT+CGG 0.404765 7.3:-30282947 None:intergenic
GATAGGGTGGGAGGAGGTGA+TGG 0.411423 7.3:-30283055 None:intergenic
TTCGTCGGCGAGTTTGGTTT+GGG 0.412252 7.3:-30282977 None:intergenic
CGCATCAGCCGGAGCACCAT+CGG 0.416372 7.3:-30283967 None:intergenic
GCCAGCTTCGCCTCCGGCTC+CGG 0.418334 7.3:+30283926 MS.gene42167:CDS
TTCGCCTCCGGCTCCGGCTC+CGG 0.418334 7.3:+30283932 MS.gene42167:CDS
TCGAGGACGGAGATATTGTA+AGG 0.421192 7.3:-30283318 None:intergenic
AGCCGACTTTACCGCCTTTG+AGG 0.424664 7.3:-30283233 None:intergenic
CGTTGCCGGTGGTTTGGAAG+AGG 0.425548 7.3:-30283176 None:intergenic
GGACTAAGACGGTGATGGTT+TGG 0.426408 7.3:-30283011 None:intergenic
GGGGTTGGAGGAGAGGATTT+CGG 0.428919 7.3:-30282926 None:intergenic
ACTGCGGCGGAGAAGAGTTC+TGG 0.441570 7.3:+30283996 MS.gene42167:CDS
GCTTTAAAAGCTTCATCGTT+CGG 0.445602 7.3:-30283519 None:intergenic
CAATTCAGCATTCGAAAGCT+TGG 0.446367 7.3:-30283562 None:intergenic
TGACGGCGTTGCCGGTGGTT+TGG 0.446971 7.3:-30283182 None:intergenic
GCAGTCGACGGCGCATCAGC+CGG 0.450836 7.3:-30283978 None:intergenic
GCACCAGCAGGCTCCGGTGC+CGG 0.453273 7.3:-30283849 None:intergenic
GGTGGTTTGGAAGAGGGTGG+TGG 0.455188 7.3:-30283169 None:intergenic
GGTGGAGCGGTGAGGATACC+GGG 0.459279 7.3:-30283363 None:intergenic
TTGGGAGTAGTCGGGGTTGG+AGG 0.460136 7.3:-30282938 None:intergenic
GTTGCCGGTGGTTTGGAAGA+GGG 0.460606 7.3:-30283175 None:intergenic
TACTTCACCTTCTCCGGCAC+CGG 0.462547 7.3:+30283836 MS.gene42167:CDS
CCTCCGGCTCCGGCTCCGGC+TGG 0.463306 7.3:+30283936 MS.gene42167:CDS
AGAGGATTTCGGTGATGTTG+TGG 0.464601 7.3:-30282915 None:intergenic
AGTAGTCGAGGAGGACTAAG+AGG 0.470428 7.3:-30283101 None:intergenic
TCTCCGGCACCGGAGCCTGC+TGG 0.471174 7.3:+30283846 MS.gene42167:CDS
AGTAGTCGGGGTTGGAGGAG+AGG 0.477034 7.3:-30282933 None:intergenic
GGCGGAGATTGTGGTGGCGA+TGG 0.477900 7.3:-30282893 None:intergenic
GAGGATTTCGGTGATGTTGT+GGG 0.478105 7.3:-30282914 None:intergenic
GTATTGGGAGTAGTCGGGGT+TGG 0.479082 7.3:-30282941 None:intergenic
AGCGGTTAGGTTAACGGAGG+AGG 0.480500 7.3:-30283391 None:intergenic
GGTGGAGAGAGTGGTGCCAT+TGG 0.480599 7.3:-30283151 None:intergenic
GAAGAGGGTGGTGGAGAGAG+TGG 0.485135 7.3:-30283160 None:intergenic
ACCTGCTTCTGCTCCTTCAC+CGG 0.486509 7.3:+30283884 MS.gene42167:CDS
TTTGAGGTCCGTGATGTTGA+CGG 0.488260 7.3:-30283217 None:intergenic
AGTTTAGCTGCAAACGGTGC+CGG 0.490029 7.3:+30283663 MS.gene42167:CDS
TGAGAAGGAGGATGAGAGAG+TGG 0.492390 7.3:-30282864 None:intergenic
ATTTCTAGTTTAGCTGCAAA+CGG 0.494895 7.3:+30283657 MS.gene42167:CDS
TCCATTGCCAGCTTCGCCTC+CGG 0.495146 7.3:+30283920 MS.gene42167:CDS
CGGCGAGTTTGGTTTGGGAG+AGG 0.496272 7.3:-30282972 None:intergenic
GGCTTCGGCTCCGCTGCTCC+CGG 0.499991 7.3:+30283252 MS.gene42167:CDS
GGACTCTCACCAGCCGGAGC+CGG 0.501636 7.3:-30283945 None:intergenic
TCACCAGCCGGAGCCGGAGC+CGG 0.504721 7.3:-30283939 None:intergenic
TGATAGTGTGCTTCTTCCAT+CGG 0.504863 7.3:+30283803 MS.gene42167:CDS
TTCTTCGAGAATTGCTGATA+CGG 0.508193 7.3:+30283746 MS.gene42167:CDS
GAAGTAGCAAGCAGCTCCGA+TGG 0.508350 7.3:-30283819 None:intergenic
GCCGGTGAAGGAGCAGAAGC+AGG 0.510054 7.3:-30283885 None:intergenic
GCATCAGCCGGAGCACCATC+GGG 0.511306 7.3:-30283966 None:intergenic
GCTTGCTACTTCACCTTCTC+CGG 0.511476 7.3:+30283830 MS.gene42167:CDS
GTCGGTGAAGGAGCACCAGC+AGG 0.511641 7.3:-30283861 None:intergenic
GCAGGCTCCGGTGCCGGAGA+AGG 0.514781 7.3:-30283843 None:intergenic
GAAGGAGCACCAGCAGGCTC+CGG 0.515834 7.3:-30283855 None:intergenic
CTCTTCTCCGCCGCAGTCGA+CGG 0.518732 7.3:-30283990 None:intergenic
AGATGAGTCGAGTTTAGAGC+CGG 0.520592 7.3:-30283271 None:intergenic
CGATGGAGAGGATGAGAAGG+AGG 0.524116 7.3:-30282876 None:intergenic
TTGGCGGGAGTTGATTTCGT+CGG 0.524457 7.3:-30282992 None:intergenic
TTAACGGAGGAGGAAGGTGG+TGG 0.527264 7.3:-30283381 None:intergenic
CGAGGAGGACTAAGAGGGAG+AGG 0.527333 7.3:-30283095 None:intergenic
AAGAGTTCTGGTAAATCTGC+TGG 0.530173 7.3:+30284008 MS.gene42167:CDS
TGGTGCCATTGGTGAGTTGG+TGG 0.531046 7.3:-30283140 None:intergenic
GCCGGAGGCGAAGCTGGCAA+TGG 0.534845 7.3:-30283921 None:intergenic
GAGTTTGGTTTGGGAGAGGA+AGG 0.536198 7.3:-30282968 None:intergenic
AGGAAGGTGGTGGAGCGGTG+AGG 0.538848 7.3:-30283371 None:intergenic
TGTAACAGAATCACCGGCAG+TGG 0.540100 7.3:-30283706 None:intergenic
GACGGAGATAGGGTGGGAGG+AGG 0.541655 7.3:-30283061 None:intergenic
CCAGCCGGAGCCGGAGCCGG+AGG 0.542388 7.3:-30283936 None:intergenic
TGAGAGTCCCGATGGTGCTC+CGG 0.544734 7.3:+30283959 MS.gene42167:CDS
GAGTGGTGCCATTGGTGAGT+TGG 0.544988 7.3:-30283143 None:intergenic
TGATCGGAGCTGTGATTTCG+AGG 0.545737 7.3:-30283335 None:intergenic
GCAGAAGCAGGTGTCGGTGA+AGG 0.547162 7.3:-30283873 None:intergenic
CTAAGACGGTGATGGTTTGG+CGG 0.548620 7.3:-30283008 None:intergenic
GCTGCTAAATATCTTCCCAT+TGG 0.550430 7.3:+30283609 MS.gene42167:CDS
TGGCGATGGAGAGGATGAGA+AGG 0.551333 7.3:-30282879 None:intergenic
TGCTTCTGCTCCTTCACCGG+CGG 0.552323 7.3:+30283887 MS.gene42167:CDS
TAAGACGGTGATGGTTTGGC+GGG 0.555575 7.3:-30283007 None:intergenic
GACGGATCCGATGTTGTTGA+CGG 0.556586 7.3:-30283199 None:intergenic
GATTACACTGTTACCACTGC+CGG 0.557909 7.3:+30283693 MS.gene42167:CDS
GAGTTTAGAGCCGGGAGCAG+CGG 0.559118 7.3:-30283262 None:intergenic
AGGATACCGGGAGCGATGAT+CGG 0.559985 7.3:-30283351 None:intergenic
GATGTTGTGGGCGGAGATTG+TGG 0.561060 7.3:-30282902 None:intergenic
GCATCGCTTATCTCATCCAA+CGG 0.561376 7.3:+30283444 MS.gene42167:CDS
AAGAGAATGCGGCGTTGTTG+AGG 0.561650 7.3:-30283032 None:intergenic
CCATCGGGACTCTCACCAGC+CGG 0.564675 7.3:-30283951 None:intergenic
CCGGCTGGTGAGAGTCCCGA+TGG 0.565181 7.3:+30283951 MS.gene42167:CDS
TGATGCGCCGTCGACTGCGG+CGG 0.568393 7.3:+30283983 MS.gene42167:CDS
AGGTTAACGGAGGAGGAAGG+TGG 0.569691 7.3:-30283384 None:intergenic
GTAGGCGCATCCGCCGGTGA+AGG 0.570599 7.3:-30283897 None:intergenic
AAAGGCGGTAAAGTCGGCTT+CGG 0.570935 7.3:+30283237 MS.gene42167:CDS
GGCGAAGCTGGCAATGGAGT+AGG 0.573463 7.3:-30283915 None:intergenic
GGCTGATGCGCCGTCGACTG+CGG 0.575330 7.3:+30283980 MS.gene42167:CDS
ATGAAGTGTAACAGAATCAC+CGG 0.576578 7.3:-30283712 None:intergenic
TGTTGTATTGGGAGTAGTCG+GGG 0.579767 7.3:-30282945 None:intergenic
GACCTCAAAGGCGGTAAAGT+CGG 0.581910 7.3:+30283231 MS.gene42167:CDS
CGGAGCTGTGATTTCGAGGA+CGG 0.584105 7.3:-30283331 None:intergenic
GTTGAGGACTAAGACGGTGA+TGG 0.588296 7.3:-30283016 None:intergenic
CGAGGACGGAGATATTGTAA+GGG 0.592002 7.3:-30283317 None:intergenic
AATGGAGTAGGCGCATCCGC+CGG 0.593139 7.3:-30283903 None:intergenic
GATGAGTCGAGTTTAGAGCC+GGG 0.594374 7.3:-30283270 None:intergenic
TCAACAGAGTAAATAGCAAG+AGG 0.595143 7.3:-30283783 None:intergenic
GATTCTGTTACACTTCATAC+CGG 0.596215 7.3:+30283717 MS.gene42167:CDS
TAGTGTTGTCGAAGTAGTCG+AGG 0.598199 7.3:-30283113 None:intergenic
CATCGGATCCGTCAACATCA+CGG 0.602282 7.3:+30283209 MS.gene42167:CDS
ACCACCCTCTTCCAAACCAC+CGG 0.602359 7.3:+30283171 MS.gene42167:CDS
ACAGCTCCGATCATCGCTCC+CGG 0.603436 7.3:+30283345 MS.gene42167:CDS
GTTGTTGACGGCGTTGCCGG+TGG 0.605559 7.3:-30283187 None:intergenic
GGAGGAGGAAGGTGGTGGAG+CGG 0.606651 7.3:-30283376 None:intergenic
AATCGTTAAACCTTTATCAG+CGG 0.607866 7.3:-30283490 None:intergenic
GTTAGGTTAACGGAGGAGGA+AGG 0.609497 7.3:-30283387 None:intergenic
AAACTCCACCAACTCACCAA+TGG 0.611545 7.3:+30283135 MS.gene42167:CDS
TTTGACGACGGAGATAGGGT+GGG 0.613696 7.3:-30283067 None:intergenic
GGCAACGCCGTCAACAACAT+CGG 0.622693 7.3:+30283192 MS.gene42167:CDS
GTAGTCGAGGAGGACTAAGA+GGG 0.625311 7.3:-30283100 None:intergenic
GTCAACATCACGGACCTCAA+AGG 0.629471 7.3:+30283219 MS.gene42167:CDS
GAAGGAGCAGAAGCAGGTGT+CGG 0.631537 7.3:-30283879 None:intergenic
GCCGGTGGTTTGGAAGAGGG+TGG 0.634462 7.3:-30283172 None:intergenic
GACGACGGAGATAGGGTGGG+AGG 0.635668 7.3:-30283064 None:intergenic
AGATTGTGGTGGCGATGGAG+AGG 0.636808 7.3:-30282888 None:intergenic
AACATCACGGACCTCAAAGG+CGG 0.638577 7.3:+30283222 MS.gene42167:CDS
GGAGGTGATGGAAGAGAATG+CGG 0.642997 7.3:-30283043 None:intergenic
GATTTCGGTGATGTTGTGGG+CGG 0.675153 7.3:-30282911 None:intergenic
AATTCTCGAAGAATCAACTC+CGG 0.685415 7.3:-30283736 None:intergenic
TGTTGTCGAAGTAGTCGAGG+AGG 0.701272 7.3:-30283110 None:intergenic
GTTGTGGGCGGAGATTGTGG+TGG 0.702975 7.3:-30282899 None:intergenic
GGCGTTGTTGAGGACTAAGA+CGG 0.713613 7.3:-30283022 None:intergenic
TAAAGCGGTTAGGTTAACGG+AGG 0.718371 7.3:-30283394 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAGTGTAATCAAATTTTC+CGG - chr7.3:30283685-30283704 None:intergenic 25.0%
!! ATTGTAAGGGATTTGTTTAA+CGG - chr7.3:30283307-30283326 None:intergenic 25.0%
AATCGTTAAACCTTTATCAG+CGG - chr7.3:30283493-30283512 None:intergenic 30.0%
TATTAAAGCGGTTAGGTTAA+CGG - chr7.3:30283400-30283419 None:intergenic 30.0%
! CTTTTTCTATTAAAGCGGTT+AGG - chr7.3:30283407-30283426 None:intergenic 30.0%
! GTAGTTTTCAAAGATCCAAT+GGG - chr7.3:30283627-30283646 None:intergenic 30.0%
!! ATTTCTAGTTTAGCTGCAAA+CGG + chr7.3:30283657-30283676 MS.gene42167:CDS 30.0%
!!! AAACGTTTTGATTAAACCGT+TGG - chr7.3:30283463-30283482 None:intergenic 30.0%
AATTCTCGAAGAATCAACTC+CGG - chr7.3:30283739-30283758 None:intergenic 35.0%
ACCGCTTTAATAGAAAAAGC+CGG + chr7.3:30283408-30283427 MS.gene42167:CDS 35.0%
ATGAAGTGTAACAGAATCAC+CGG - chr7.3:30283715-30283734 None:intergenic 35.0%
GATTCTGTTACACTTCATAC+CGG + chr7.3:30283717-30283736 MS.gene42167:CDS 35.0%
TCAACAGAGTAAATAGCAAG+AGG - chr7.3:30283786-30283805 None:intergenic 35.0%
TTCGAAAGCTTGGTTAAATC+AGG - chr7.3:30283555-30283574 None:intergenic 35.0%
TTCTTCGAGAATTGCTGATA+CGG + chr7.3:30283746-30283765 MS.gene42167:CDS 35.0%
TTTCAATCAACCGCTGATAA+AGG + chr7.3:30283480-30283499 MS.gene42167:CDS 35.0%
! CGTAGTTTTCAAAGATCCAA+TGG - chr7.3:30283628-30283647 None:intergenic 35.0%
!! ACCGGCTTTTTCTATTAAAG+CGG - chr7.3:30283412-30283431 None:intergenic 35.0%
!! AGGGATTTGTTTAACGGATT+TGG - chr7.3:30283301-30283320 None:intergenic 35.0%
!! GCTTTAAAAGCTTCATCGTT+CGG - chr7.3:30283522-30283541 None:intergenic 35.0%
!!! ATTTTTTTGACGACGGAGAT+AGG - chr7.3:30283075-30283094 None:intergenic 35.0%
!!! GATGAAGCTTTTAAAGCGAA+AGG + chr7.3:30283525-30283544 MS.gene42167:CDS 35.0%
!!! TTTTTTTGACGACGGAGATA+GGG - chr7.3:30283074-30283093 None:intergenic 35.0%
CAAGCTTTCGAATGCTGAAT+TGG + chr7.3:30283563-30283582 MS.gene42167:CDS 40.0%
CAATTCAGCATTCGAAAGCT+TGG - chr7.3:30283565-30283584 None:intergenic 40.0%
GCTGCTAAATATCTTCCCAT+TGG + chr7.3:30283609-30283628 MS.gene42167:CDS 40.0%
! AAGAGTTCTGGTAAATCTGC+TGG + chr7.3:30284008-30284027 MS.gene42167:CDS 40.0%
! CGATGCAAATGTTTTGCAAC+CGG - chr7.3:30283430-30283449 None:intergenic 40.0%
! GAGAATTGCTGATACGGTTT+TGG + chr7.3:30283752-30283771 MS.gene42167:CDS 40.0%
! TGATAGTGTGCTTCTTCCAT+CGG + chr7.3:30283803-30283822 MS.gene42167:CDS 40.0%
!!! GGAGAGGATTTTTTTGACGA+CGG - chr7.3:30283082-30283101 None:intergenic 40.0%
AAACTCCACCAACTCACCAA+TGG + chr7.3:30283135-30283154 MS.gene42167:CDS 45.0%
AGAGGATTTCGGTGATGTTG+TGG - chr7.3:30282918-30282937 None:intergenic 45.0%
CGAGGACGGAGATATTGTAA+GGG - chr7.3:30283320-30283339 None:intergenic 45.0%
GAGGATTTCGGTGATGTTGT+GGG - chr7.3:30282917-30282936 None:intergenic 45.0%
GATTACACTGTTACCACTGC+CGG + chr7.3:30283693-30283712 MS.gene42167:CDS 45.0%
GCATCGCTTATCTCATCCAA+CGG + chr7.3:30283444-30283463 MS.gene42167:CDS 45.0%
GTGTTGTATTGGGAGTAGTC+GGG - chr7.3:30282949-30282968 None:intergenic 45.0%
TAAAGCGGTTAGGTTAACGG+AGG - chr7.3:30283397-30283416 None:intergenic 45.0%
TAGTGTTGTCGAAGTAGTCG+AGG - chr7.3:30283116-30283135 None:intergenic 45.0%
TCGAGGACGGAGATATTGTA+AGG - chr7.3:30283321-30283340 None:intergenic 45.0%
TGTTGTATTGGGAGTAGTCG+GGG - chr7.3:30282948-30282967 None:intergenic 45.0%
! AGATGAGTCGAGTTTAGAGC+CGG - chr7.3:30283274-30283293 None:intergenic 45.0%
! GGTGTTGTATTGGGAGTAGT+CGG - chr7.3:30282950-30282969 None:intergenic 45.0%
! TTTGAGGTCCGTGATGTTGA+CGG - chr7.3:30283220-30283239 None:intergenic 45.0%
!! GACTGCTTTGTCTGCTTTTG+TGG + chr7.3:30284070-30284089 MS.gene42167:CDS 45.0%
!! GGAGAGGAAGGTGTTGTATT+GGG - chr7.3:30282959-30282978 None:intergenic 45.0%
AACATCACGGACCTCAAAGG+CGG + chr7.3:30283222-30283241 MS.gene42167:CDS 50.0%
AAGAGAATGCGGCGTTGTTG+AGG - chr7.3:30283035-30283054 None:intergenic 50.0%
AGTAGTCGAGGAGGACTAAG+AGG - chr7.3:30283104-30283123 None:intergenic 50.0%
AGTTTAGCTGCAAACGGTGC+CGG + chr7.3:30283663-30283682 MS.gene42167:CDS 50.0%
CATCGGATCCGTCAACATCA+CGG + chr7.3:30283209-30283228 MS.gene42167:CDS 50.0%
GACCTCAAAGGCGGTAAAGT+CGG + chr7.3:30283231-30283250 MS.gene42167:CDS 50.0%
GACGGATCCGATGTTGTTGA+CGG - chr7.3:30283202-30283221 None:intergenic 50.0%
GATTTCGGTGATGTTGTGGG+CGG - chr7.3:30282914-30282933 None:intergenic 50.0%
GGCGTTGTTGAGGACTAAGA+CGG - chr7.3:30283025-30283044 None:intergenic 50.0%
GGTGTGAACGTGAAAGCTTC+TGG + chr7.3:30284029-30284048 MS.gene42167:CDS 50.0%
GTAGTCGAGGAGGACTAAGA+GGG - chr7.3:30283103-30283122 None:intergenic 50.0%
GTCAACATCACGGACCTCAA+AGG + chr7.3:30283219-30283238 MS.gene42167:CDS 50.0%
GTTAGGTTAACGGAGGAGGA+AGG - chr7.3:30283390-30283409 None:intergenic 50.0%
GTTGAGGACTAAGACGGTGA+TGG - chr7.3:30283019-30283038 None:intergenic 50.0%
TGAGAAGGAGGATGAGAGAG+TGG - chr7.3:30282867-30282886 None:intergenic 50.0%
TGATCGGAGCTGTGATTTCG+AGG - chr7.3:30283338-30283357 None:intergenic 50.0%
TGTAACAGAATCACCGGCAG+TGG - chr7.3:30283709-30283728 None:intergenic 50.0%
TGTTGTCGAAGTAGTCGAGG+AGG - chr7.3:30283113-30283132 None:intergenic 50.0%
TTTCGTCGGCGAGTTTGGTT+TGG - chr7.3:30282981-30283000 None:intergenic 50.0%
TTTGACGACGGAGATAGGGT+GGG - chr7.3:30283070-30283089 None:intergenic 50.0%
! AAAGGCGGTAAAGTCGGCTT+CGG + chr7.3:30283237-30283256 MS.gene42167:CDS 50.0%
! CTAAGACGGTGATGGTTTGG+CGG - chr7.3:30283011-30283030 None:intergenic 50.0%
! GATGAGTCGAGTTTAGAGCC+GGG - chr7.3:30283273-30283292 None:intergenic 50.0%
! GCTTGCTACTTCACCTTCTC+CGG + chr7.3:30283830-30283849 MS.gene42167:CDS 50.0%
! GGACTAAGACGGTGATGGTT+TGG - chr7.3:30283014-30283033 None:intergenic 50.0%
! GTTGATTTCGTCGGCGAGTT+TGG - chr7.3:30282986-30283005 None:intergenic 50.0%
! TAAGACGGTGATGGTTTGGC+GGG - chr7.3:30283010-30283029 None:intergenic 50.0%
! TTCGTCGGCGAGTTTGGTTT+GGG - chr7.3:30282980-30282999 None:intergenic 50.0%
! TTGGCGGGAGTTGATTTCGT+CGG - chr7.3:30282995-30283014 None:intergenic 50.0%
! TTTTGACGACGGAGATAGGG+TGG - chr7.3:30283071-30283090 None:intergenic 50.0%
!! GAGTTTGGTTTGGGAGAGGA+AGG - chr7.3:30282971-30282990 None:intergenic 50.0%
!! GGAGGTGATGGAAGAGAATG+CGG - chr7.3:30283046-30283065 None:intergenic 50.0%
!! GGGAGAGGAAGGTGTTGTAT+TGG - chr7.3:30282960-30282979 None:intergenic 50.0%
ACCACCCTCTTCCAAACCAC+CGG + chr7.3:30283171-30283190 MS.gene42167:CDS 55.0%
ACCTGCTTCTGCTCCTTCAC+CGG + chr7.3:30283884-30283903 MS.gene42167:CDS 55.0%
AGCGGTTAGGTTAACGGAGG+AGG - chr7.3:30283394-30283413 None:intergenic 55.0%
AGGATACCGGGAGCGATGAT+CGG - chr7.3:30283354-30283373 None:intergenic 55.0%
AGGTTAACGGAGGAGGAAGG+TGG - chr7.3:30283387-30283406 None:intergenic 55.0%
CGATGGAGAGGATGAGAAGG+AGG - chr7.3:30282879-30282898 None:intergenic 55.0%
CGGAGCTGTGATTTCGAGGA+CGG - chr7.3:30283334-30283353 None:intergenic 55.0%
GAAGGAGCAGAAGCAGGTGT+CGG - chr7.3:30283882-30283901 None:intergenic 55.0%
GAAGTAGCAAGCAGCTCCGA+TGG - chr7.3:30283822-30283841 None:intergenic 55.0%
GATGTTGTGGGCGGAGATTG+TGG - chr7.3:30282905-30282924 None:intergenic 55.0%
GATGTTGTTGACGGCGTTGC+CGG - chr7.3:30283193-30283212 None:intergenic 55.0%
GGCAACGCCGTCAACAACAT+CGG + chr7.3:30283192-30283211 MS.gene42167:CDS 55.0%
GGGGTTGGAGGAGAGGATTT+CGG - chr7.3:30282929-30282948 None:intergenic 55.0%
GTATTGGGAGTAGTCGGGGT+TGG - chr7.3:30282944-30282963 None:intergenic 55.0%
TACTTCACCTTCTCCGGCAC+CGG + chr7.3:30283836-30283855 MS.gene42167:CDS 55.0%
TGGCGATGGAGAGGATGAGA+AGG - chr7.3:30282882-30282901 None:intergenic 55.0%
TTAACGGAGGAGGAAGGTGG+TGG - chr7.3:30283384-30283403 None:intergenic 55.0%
! AGATTGTGGTGGCGATGGAG+AGG - chr7.3:30282891-30282910 None:intergenic 55.0%
! AGCCGACTTTACCGCCTTTG+AGG - chr7.3:30283236-30283255 None:intergenic 55.0%
! GTTGCCGGTGGTTTGGAAGA+GGG - chr7.3:30283178-30283197 None:intergenic 55.0%
!! GAGTGGTGCCATTGGTGAGT+TGG - chr7.3:30283146-30283165 None:intergenic 55.0%
!! TGGTGCCATTGGTGAGTTGG+TGG - chr7.3:30283143-30283162 None:intergenic 55.0%
AATGGAGTAGGCGCATCCGC+CGG - chr7.3:30283906-30283925 None:intergenic 60.0%
ACAGCTCCGATCATCGCTCC+CGG + chr7.3:30283345-30283364 MS.gene42167:CDS 60.0%
ACTGCGGCGGAGAAGAGTTC+TGG + chr7.3:30283996-30284015 MS.gene42167:CDS 60.0%
AGTAGTCGGGGTTGGAGGAG+AGG - chr7.3:30282936-30282955 None:intergenic 60.0%
CGAGGAGGACTAAGAGGGAG+AGG - chr7.3:30283098-30283117 None:intergenic 60.0%
GATAGGGTGGGAGGAGGTGA+TGG - chr7.3:30283058-30283077 None:intergenic 60.0%
GGCGAAGCTGGCAATGGAGT+AGG - chr7.3:30283918-30283937 None:intergenic 60.0%
GTTGTGGGCGGAGATTGTGG+TGG - chr7.3:30282902-30282921 None:intergenic 60.0%
TCCATTGCCAGCTTCGCCTC+CGG + chr7.3:30283920-30283939 MS.gene42167:CDS 60.0%
TGAGAGTCCCGATGGTGCTC+CGG + chr7.3:30283959-30283978 MS.gene42167:CDS 60.0%
TGCTTCTGCTCCTTCACCGG+CGG + chr7.3:30283887-30283906 MS.gene42167:CDS 60.0%
TGGTGGAGCGGTGAGGATAC+CGG - chr7.3:30283367-30283386 None:intergenic 60.0%
TTGGGAGTAGTCGGGGTTGG+AGG - chr7.3:30282941-30282960 None:intergenic 60.0%
! CGTTGCCGGTGGTTTGGAAG+AGG - chr7.3:30283179-30283198 None:intergenic 60.0%
! GAGTTTAGAGCCGGGAGCAG+CGG - chr7.3:30283265-30283284 None:intergenic 60.0%
! GGTGGTTTGGAAGAGGGTGG+TGG - chr7.3:30283172-30283191 None:intergenic 60.0%
!! CGGCGAGTTTGGTTTGGGAG+AGG - chr7.3:30282975-30282994 None:intergenic 60.0%
!! GAAGAGGGTGGTGGAGAGAG+TGG - chr7.3:30283163-30283182 None:intergenic 60.0%
!! GCAGAAGCAGGTGTCGGTGA+AGG - chr7.3:30283876-30283895 None:intergenic 60.0%
!! GGTGGAGAGAGTGGTGCCAT+TGG - chr7.3:30283154-30283173 None:intergenic 60.0%
CCATCGGGACTCTCACCAGC+CGG - chr7.3:30283954-30283973 None:intergenic 65.0%
CTCTTCTCCGCCGCAGTCGA+CGG - chr7.3:30283993-30284012 None:intergenic 65.0%
GACGACGGAGATAGGGTGGG+AGG - chr7.3:30283067-30283086 None:intergenic 65.0%
GACGGAGATAGGGTGGGAGG+AGG - chr7.3:30283064-30283083 None:intergenic 65.0%
GCCGGTGAAGGAGCAGAAGC+AGG - chr7.3:30283888-30283907 None:intergenic 65.0%
GGTGGAGCGGTGAGGATACC+GGG - chr7.3:30283366-30283385 None:intergenic 65.0%
GTTGTTGACGGCGTTGCCGG+TGG - chr7.3:30283190-30283209 None:intergenic 65.0%
TGACGGCGTTGCCGGTGGTT+TGG - chr7.3:30283185-30283204 None:intergenic 65.0%
! CGCATCAGCCGGAGCACCAT+CGG - chr7.3:30283970-30283989 None:intergenic 65.0%
! GCATCAGCCGGAGCACCATC+GGG - chr7.3:30283969-30283988 None:intergenic 65.0%
! GCCGGTGGTTTGGAAGAGGG+TGG - chr7.3:30283175-30283194 None:intergenic 65.0%
! GGCGGAGATTGTGGTGGCGA+TGG - chr7.3:30282896-30282915 None:intergenic 65.0%
!! AGGAAGGTGGTGGAGCGGTG+AGG - chr7.3:30283374-30283393 None:intergenic 65.0%
!! GAAGGAGCACCAGCAGGCTC+CGG - chr7.3:30283858-30283877 None:intergenic 65.0%
!! GGAGGAGGAAGGTGGTGGAG+CGG - chr7.3:30283379-30283398 None:intergenic 65.0%
!! GTCGGTGAAGGAGCACCAGC+AGG - chr7.3:30283864-30283883 None:intergenic 65.0%
CCGGCTGGTGAGAGTCCCGA+TGG + chr7.3:30283951-30283970 MS.gene42167:CDS 70.0%
GCAGTCGACGGCGCATCAGC+CGG - chr7.3:30283981-30284000 None:intergenic 70.0%
GCCGGAGGCGAAGCTGGCAA+TGG - chr7.3:30283924-30283943 None:intergenic 70.0%
GGACTCTCACCAGCCGGAGC+CGG - chr7.3:30283948-30283967 None:intergenic 70.0%
GTAGGCGCATCCGCCGGTGA+AGG - chr7.3:30283900-30283919 None:intergenic 70.0%
! GGCTGATGCGCCGTCGACTG+CGG + chr7.3:30283980-30283999 MS.gene42167:CDS 70.0%
! TGATGCGCCGTCGACTGCGG+CGG + chr7.3:30283983-30284002 MS.gene42167:CDS 70.0%
GCACCAGCAGGCTCCGGTGC+CGG - chr7.3:30283852-30283871 None:intergenic 75.0%
GCCAGCTTCGCCTCCGGCTC+CGG + chr7.3:30283926-30283945 MS.gene42167:CDS 75.0%
GGCTTCGGCTCCGCTGCTCC+CGG + chr7.3:30283252-30283271 MS.gene42167:CDS 75.0%
TCACCAGCCGGAGCCGGAGC+CGG - chr7.3:30283942-30283961 None:intergenic 75.0%
TTCGCCTCCGGCTCCGGCTC+CGG + chr7.3:30283932-30283951 MS.gene42167:CDS 75.0%
! GCAGGCTCCGGTGCCGGAGA+AGG - chr7.3:30283846-30283865 None:intergenic 75.0%
! TCTCCGGCACCGGAGCCTGC+TGG + chr7.3:30283846-30283865 MS.gene42167:CDS 75.0%
! GCCGGAGCCGGAGGCGAAGC+TGG - chr7.3:30283930-30283949 None:intergenic 80.0%
! CCAGCCGGAGCCGGAGCCGG+AGG - chr7.3:30283939-30283958 None:intergenic 85.0%
! CCTCCGGCTCCGGCTCCGGC+TGG + chr7.3:30283936-30283955 MS.gene42167:CDS 85.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 30282856 30284115 30282856 ID=MS.gene42167
chr7.3 mRNA 30282856 30284115 30282856 ID=MS.gene42167.t1;Parent=MS.gene42167
chr7.3 exon 30282856 30284115 30282856 ID=MS.gene42167.t1.exon1;Parent=MS.gene42167.t1
chr7.3 CDS 30282856 30284115 30282856 ID=cds.MS.gene42167.t1;Parent=MS.gene42167.t1
Gene Sequence

>MS.gene42167

ATGGGTCACCACTCTCTCATCCTCCTTCTCATCCTCTCCATCGCCACCACAATCTCCGCCCACAACATCACCGAAATCCTCTCCTCCAACCCCGACTACTCCCAATACAACACCTTCCTCTCCCAAACCAAACTCGCCGACGAAATCAACTCCCGCCAAACCATCACCGTCTTAGTCCTCAACAACGCCGCATTCTCTTCCATCACCTCCTCCCACCCTATCTCCGTCGTCAAAAAAATCCTCTCCCTCTTAGTCCTCCTCGACTACTTCGACAACACTAAACTCCACCAACTCACCAATGGCACCACTCTCTCCACCACCCTCTTCCAAACCACCGGCAACGCCGTCAACAACATCGGATCCGTCAACATCACGGACCTCAAAGGCGGTAAAGTCGGCTTCGGCTCCGCTGCTCCCGGCTCTAAACTCGACTCATCTTACTCCAAATCCGTTAAACAAATCCCTTACAATATCTCCGTCCTCGAAATCACAGCTCCGATCATCGCTCCCGGTATCCTCACCGCTCCACCACCTTCCTCCTCCGTTAACCTAACCGCTTTAATAGAAAAAGCCGGTTGCAAAACATTTGCATCGCTTATCTCATCCAACGGTTTAATCAAAACGTTTCAATCAACCGCTGATAAAGGTTTAACGATTTTTGCTCCGAACGATGAAGCTTTTAAAGCGAAAGGTGTTCCTGATTTAACCAAGCTTTCGAATGCTGAATTGGTTTCACTTTTACAGTATCATGCTGCTGCTAAATATCTTCCCATTGGATCTTTGAAAACTACGAAAGACGCTATTTCTAGTTTAGCTGCAAACGGTGCCGGAAAATTTGATTACACTGTTACCACTGCCGGTGATTCTGTTACACTTCATACCGGAGTTGATTCTTCGAGAATTGCTGATACGGTTTTGGATTCTACTCCTCTTGCTATTTACTCTGTTGATAGTGTGCTTCTTCCATCGGAGCTGCTTGCTACTTCACCTTCTCCGGCACCGGAGCCTGCTGGTGCTCCTTCACCGACACCTGCTTCTGCTCCTTCACCGGCGGATGCGCCTACTCCATTGCCAGCTTCGCCTCCGGCTCCGGCTCCGGCTGGTGAGAGTCCCGATGGTGCTCCGGCTGATGCGCCGTCGACTGCGGCGGAGAAGAGTTCTGGTAAATCTGCTGGTGTGAACGTGAAAGCTTCTGGTGTTTTTACTGTTGCAGTGACTGCTTTGTCTGCTTTTGTGGTTTCCTTTGTTTTTATGTCTTGA
Protein sequence

>MS.gene42167.t1

MGHHSLILLLILSIATTISAHNITEILSSNPDYSQYNTFLSQTKLADEINSRQTITVLVLNNAAFSSITSSHPISVVKKILSLLVLLDYFDNTKLHQLTNGTTLSTTLFQTTGNAVNNIGSVNITDLKGGKVGFGSAAPGSKLDSSYSKSVKQIPYNISVLEITAPIIAPGILTAPPPSSSVNLTALIEKAGCKTFASLISSNGLIKTFQSTADKGLTIFAPNDEAFKAKGVPDLTKLSNAELVSLLQYHAAAKYLPIGSLKTTKDAISSLAANGAGKFDYTVTTAGDSVTLHTGVDSSRIADTVLDSTPLAIYSVDSVLLPSELLATSPSPAPEPAGAPSPTPASAPSPADAPTPLPASPPAPAPAGESPDGAPADAPSTAAEKSSGKSAGVNVKASGVFTVAVTALSAFVVSFVFMS