AlfalfaGEDB | MS.gene42285

M. sativa cultivar XinJiangDaYe / MS.gene42285

KEGG: -
GO: GO:0003674 GO:0003824
PFAM: PF00561.23

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene42285.t1	XP_003603733.1	97.4	387	9	1	1	387	1	386	1.90E-224	788.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene42285.t1	Q0J0A4	82.8	366	62	1	23	387	49	414	1.4e-188	660.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene42285.t1	G7J4P3	97.4	387	9	1	1	387	1	386	1.3e-224	788.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene009458	MS.gene42285	PPI
MS.gene42285	MS.gene56256	PPI
MS.gene42285	MS.gene63514	PPI
MS.gene51627	MS.gene42285	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene42285.t1	MTR_3g113160	97.416	387	9	1	1	387	1	386	783
MS.gene42285.t1	MTR_1g023340	80.263	380	70	2	9	387	4	379	648
MS.gene42285.t1	MTR_1g023340	79.130	345	67	2	9	352	17	357	578

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene42285.t1	AT4G24160	81.522	368	66	2	19	384	48	415	0.0	640
MS.gene42285.t1	AT4G24160	83.624	287	46	1	19	304	48	334	0.0	511

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Find 99 sgRNAs with CRISPR-Local

Find 302 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGAATCTCTTCCCGAA+GGG	0.646555	3.2:-89929539	MS.gene42285:CDS
AAATATACAAGCGCTAGGTT+TGG	0.481313	3.2:-89931063	MS.gene42285:CDS
AACCATCTAACTTTAGAGCC+AGG	0.557305	3.2:+89933068	None:intergenic
AAGCATAAAACACAGCTGAA+TGG	0.533305	3.2:+89929589	None:intergenic
AAGGTTTCTTACCCCAAATT+CGG	0.374235	3.2:-89929562	MS.gene42285:CDS
AAGTTTCGAGCAACATGGAA+GGG	0.587783	3.2:-89932348	MS.gene42285:CDS
AATATAGGTTCTGGTCCTCC+TGG	0.478496	3.2:-89933086	MS.gene42285:CDS
ACACAGCTCCCCACTAGCTT+TGG	0.405889	3.2:+89930878	None:intergenic
ACAGCTGAATGGAAGCCACT+TGG	0.534128	3.2:+89929600	None:intergenic
ACATTGGCGGCCAAAGCTAG+TGG	0.568091	3.2:-89930888	MS.gene42285:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAATTAAGTCAATAGGAG+TGG	+	chr3.2:89932310-89932329	None:intergenic	30.0%
AACAGTTATCTTGATTGTGT+TGG	+	chr3.2:89932613-89932632	None:intergenic	30.0%
AATCAAATATGGGATTAGAG+GGG	-	chr3.2:89931390-89931409	MS.gene42285:intron	30.0%
AATGTGTGCTAACTTATCAT+AGG	+	chr3.2:89930622-89930641	None:intergenic	30.0%
ACAATTAAGTCAATAGGAGT+GGG	+	chr3.2:89932309-89932328	None:intergenic	30.0%
ACTTAAAACAGCTAATCAGA+TGG	+	chr3.2:89932078-89932097	None:intergenic	30.0%
ACTTAAGGGGAAAAAAATTC+AGG	-	chr3.2:89932863-89932882	MS.gene42285:intron	30.0%
AGAGTCTTCTACTATATATC+AGG	-	chr3.2:89930778-89930797	MS.gene42285:intron	30.0%
ATCTCTATGTATGACATGAT+TGG	+	chr3.2:89932150-89932169	None:intergenic	30.0%
CAAATCAAATATGGGATTAG+AGG	-	chr3.2:89931388-89931407	MS.gene42285:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.2	gene	89929524	89933355	89929524	ID=MS.gene42285
chr3.2	mRNA	89929524	89933355	89929524	ID=MS.gene42285.t1;Parent=MS.gene42285
chr3.2	exon	89933216	89933355	89933216	ID=MS.gene42285.t1.exon1;Parent=MS.gene42285.t1
chr3.2	CDS	89933216	89933355	89933216	ID=cds.MS.gene42285.t1;Parent=MS.gene42285.t1
chr3.2	exon	89932897	89933133	89932897	ID=MS.gene42285.t1.exon2;Parent=MS.gene42285.t1
chr3.2	CDS	89932897	89933133	89932897	ID=cds.MS.gene42285.t1;Parent=MS.gene42285.t1
chr3.2	exon	89932763	89932809	89932763	ID=MS.gene42285.t1.exon3;Parent=MS.gene42285.t1
chr3.2	CDS	89932763	89932809	89932763	ID=cds.MS.gene42285.t1;Parent=MS.gene42285.t1
chr3.2	exon	89932559	89932677	89932559	ID=MS.gene42285.t1.exon4;Parent=MS.gene42285.t1
chr3.2	CDS	89932559	89932677	89932559	ID=cds.MS.gene42285.t1;Parent=MS.gene42285.t1
chr3.2	exon	89932294	89932454	89932294	ID=MS.gene42285.t1.exon5;Parent=MS.gene42285.t1
chr3.2	CDS	89932294	89932454	89932294	ID=cds.MS.gene42285.t1;Parent=MS.gene42285.t1
chr3.2	exon	89931010	89931119	89931010	ID=MS.gene42285.t1.exon6;Parent=MS.gene42285.t1
chr3.2	CDS	89931010	89931119	89931010	ID=cds.MS.gene42285.t1;Parent=MS.gene42285.t1
chr3.2	exon	89930825	89930924	89930825	ID=MS.gene42285.t1.exon7;Parent=MS.gene42285.t1
chr3.2	CDS	89930825	89930924	89930825	ID=cds.MS.gene42285.t1;Parent=MS.gene42285.t1
chr3.2	exon	89929733	89929856	89929733	ID=MS.gene42285.t1.exon8;Parent=MS.gene42285.t1
chr3.2	CDS	89929733	89929856	89929733	ID=cds.MS.gene42285.t1;Parent=MS.gene42285.t1
chr3.2	exon	89929524	89929649	89929524	ID=MS.gene42285.t1.exon9;Parent=MS.gene42285.t1
chr3.2	CDS	89929524	89929649	89929524	ID=cds.MS.gene42285.t1;Parent=MS.gene42285.t1

Gene Sequence

>MS.gene42285

ATGGCGGAAGAAATTAGACAAAACGACGACGTCGGTTCATCATCATCGAAATCTAAAAGCTTCTGGTCTTCACTCCGTTGGATTCCCACTTCAACCGATCATATCATCGCCGCTGAGAAACGCCTTCTTTCCATTATCAAGTAAGTAGTACTAATTTCGTTTCAATTCTTTCTTTTACGTTTATTTACGCTTTTAATAAATAAACTTCAATTTGTTTGGTAGGACTGGGTATGTTCAAGAGCGTGTTAATATAGGTTCTGGTCCTCCTGGCTCTAAAGTTAGATGGTTCCGTTCAACCAGTAATGAACCACGTTTTCTCAACACTGTTACATTTGACAGTAAACCTGATTCTCCTACGCTTGTTATGGTTCATGGATACGCTGCTTCTCAGGGTTTCTTCTTTCGCAATTTTGATGCTCTTGCCTCTCGTTTCAGAATCATTGCTGTTGATCAACTTGGGTGAGTTACTGAGTTATAATATAATATATGCTGCTAATATCATCTGCTTTAACTGCTCTTATCTTTCATTTCTATATATTTTCACAGTTGGGGCGGATCAAGCAGACCTGATTTCACATGTAAAAGTACTGAAGGTTAGTTCAAAATTAAGAGATATACTTTGTTGCTCGACTTTAAGGTCACCGTTTACCTATTTAAATTTCGTTGTTGATCTTGCAGAAACTGAGGCATGGTTCATTGATTCTTTTGAGGAATGGAGAAAAGCCAAAAATCTGACCAATTTCATACTGCTTGGACATTCTTTTGGTGGTTATGTTGCTTCCAAATACGCGCTCAAGGTCAGTATTCCATTGCTGCATTGCATTAAAATGATAAATAATACCGACTTCTTAACTTTCTTTTACCAAACGGCCTGATGCATATTTTATTCATTTTCATATAGCACCCTGAGCATGTACAACACTTAATTTTGGTGGGACCTGCCGGGTTTACAGAAGAAACAGATCCAAAGACTGAGTTTGTTACTAAGTTTCGAGCAACATGGAAGGGAGCCGTTCTGAACCATCTATGGGAATCTAATTTTACACCTCAAAAAATTGTCAGGTAAAAAGGACTATTGTGTCCCATTTTTATCATCCTATGATAAGTTAGCACACATTTTTTAATCAATTGACAGTTTAAGATGATTTGTGATGCCTGTGTATACTTTTATTTATGAAGAGGCTTGTGTATACAATTTTCTGTTATTATATTGGTTCTGGTACGTTGCGCCTCACCTCAGTTTGTTGATACTGTAGAGTCTTCTACTATATATCAGGGTTCTAAAAGAATGTTTGATTATTTCATCTGAAAGATTGTTGATACTGTGTAGATGCTCATTCTCACCTAATCTTAAAATTTAAAATAAGTTGTCTTTGAAATGAAGTGTTGGTTTTCATGATATTGTAATGCATTTCGCACGAGTTCAGGTCAATAATGCTGGACTCCCTTCCTTTAATATGTATTTGTAATTTTGTTATAACTGAAGTTGACCGGCATATTGACTTAAGATTACTAATGAGTTCTACTTAATAACTATCTGGTAATTTCGTTATCACTGAAGTAGACCGACATATTGACTTAGGTTCTCTTTGTCACTGTTGGGTTATTATTACTAACTCTTAAGTCATGGATGTAATCATTTTGGATGAATTTTTATGACCCTTGGCTTAATTAATGGTTGAGGACTTGGAGTTGCCTTCATGTGACTAAGAGGTCACAAGTGGTAAGACTGCCTGGGAAAGGATTCTTCCGTGGCAAGAGCTTTATTGTATATGAGCACGGTGTTTTTTTTTTTTCTCTTATTATGGTTACAAGCAGAAGGAGCTTGTTCCTGGGTTGCCAATCACTTTTTATTGTTATTACTCAAATCAAATATGGGATTAGAGGGGACAGAGTCATTCTTCTACTTGTAGGAACAAGTTTGCATTCTCTTTATGTTTATGCTACTTCTAAGTATCAGGTTTCAATAAATGAGGGAAAGCTAGAAAAAATGGAATTAAATATCATTCCACGAAGCATGGAATCACCAATCCCTGGTATCGGGAAGGAATTTTCATTTCTGTTTCTGTGGAATTAGCCATGGAAAGGAATCACCCTTACATGTTTTTTGGCCAACAAACATGAGAATAGTCACTCCATAGAATAAAGTATAAAATGGAATCACTATTCTGCATACCAACATTGTTATATTATTTTGTTGATTTTATTAACAGTTTTTCTGATGCATTTGTGGCAGAGGTTTAGGTCCTTGGGGTCCTAACATGGTCCGCAAATATACAAGCGCTAGGTTTGGTACACATTCAACCGGGCAAAAACTGATTGAAGAGGAATCAAGTCTGCTAACTGGTATGGCAAGATATTAAATTGATATATGGTTTGAAATTTAAATGTAACATATTCTAATTCTAATTTGTTTTTCTACCTATTGAAGATTATGTTTATCATACATTGGCGGCCAAAGCTAGTGGGGAGCTGTGTTTAAAATATATTTTTGCATTTGGAGCATTTGCTAGGATGCCCCTTCTTCAAAGGTTTGGCAATCATTCTCTTCCCATCTGATTAGCTGTTTTAAGTAAATGTATTCTGATTTCTGATGAATGAATAATATTGTCTTGAAGACTTTCCAATCATGTCATACATAGAGATATTATATACTATTATTGATCCGAAGTCAATCGAGCCTGCTTTTTTGAGATGCGATTCTTTTTTGTTTTCATTTTTGGGATGAACAATCGTTTAGAGATTTAACTCTATAACCTTATAAAAATTGTAGCACCACTTGCCCACTCCTATTGACTTAATTGTTCTTGTTTTGGTGTAGTAACATACTAATCTATTGACATAGTTTAAAACTTTTAGATAAGAACAACATATACCGACTAGGCAACTACATGTTTGGGAAAAATAGAATAGGTTAGTAGCTGCTGATGGTGATTCAAAACTCAGCATCTGATGATTTGCACATATCTATCCTGTATCACCAGGAGCACATGTGCATCCTGATTTCTGAGGGGAATGGTGGGGACTGTGGGGAGGGGGAGTAAAGGGAGCAGTAAATAGGAAGCAAATAAATATCCAATTTTTTACCAACACAATCAAGATAACTGTTGCGCCTTGTATCATTTGTAAGGGCTCTTTTAAGCCCTAAGGTCTTCCCTACATTGCAGTGGAGCATTATCCTTTCACCCTATATTTTTATCATCAAAAAAGAAAAAAGCTTGGCCAGGGAGTTGACCTTGAATTTGTGGTGTGGCATATTACTGACTGATGAATATCTGTGCCTCTTGGGTAAGAATGGAAATGTCTAACCAAGCATTCAGGAAGAAAATTAAAACATGAACTTAAGGGGAAAAAAATTCAGGAATCATGAGAAAAGCTGAATCAATCATTTTTTTGTTTGCAAATTTTAGATAAATATCTTGATTATTAGGATTAATATCCCATGGTTTTTAGCCAATGTCTTGTTAAGGCCTCACCTCTCTACATCACTTTCTTGCAGTGCTCCAGAGTGGAAAGTGCCCACCACATTCATATATGGTTACGAAGATTGGATGAATTACGAAGGTGCCCAAGAAGCTCGCAAGCATATGAAGGTTCCATGTGAAATTATCAGGGTCCCTCAGGTATAATTTTTTAATCAGTACCTAAAACAATGAAACATTTTTTGCAATATTAGAACTAATAAAATTAATTACTTCTATCGCAGGCCGGACATTTTGTGTTCATTGACAACCCAAGTGGCTTCCATTCAGCTGTGTTTTATGCTTGTCGAAGGTTTCTTACCCCAAATTCGGAAAATGAATCTCTTCCCGAAGGGCTATCGTCTGCTTAG

Protein sequence

>MS.gene42285.t1

MAEEIRQNDDVGSSSSKSKSFWSSLRWIPTSTDHIIAAEKRLLSIIKTGYVQERVNIGSGPPGSKVRWFRSTSNEPRFLNTVTFDSKPDSPTLVMVHGYAASQGFFFRNFDALASRFRIIAVDQLGWGGSSRPDFTCKSTEETEAWFIDSFEEWRKAKNLTNFILLGHSFGGYVASKYALKHPEHVQHLILVGPAGFTEETDPKTEFVTKFRATWKGAVLNHLWESNFTPQKIVRGLGPWGPNMVRKYTSARFGTHSTGQKLIEEESSLLTDYVYHTLAAKASGELCLKYIFAFGAFARMPLLQSAPEWKVPTTFIYGYEDWMNYEGAQEARKHMKVPCEIIRVPQAGHFVFIDNPSGFHSAVFYACRRFLTPNSENESLPEGLSSA