AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene42362

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene42362.t1 MTR_3g111600 98.932 281 3 0 64 344 1 281 0.0 576
MS.gene42362.t1 MTR_1g021855 80.183 328 53 2 29 344 40 367 0.0 546
MS.gene42362.t1 MTR_8g078240 71.827 323 84 2 28 343 22 344 3.84e-174 487
MS.gene42362.t1 MTR_5g019220 69.617 339 82 3 27 344 29 367 4.50e-173 485
MS.gene42362.t1 MTR_3g092310 63.607 305 104 3 35 337 34 333 1.13e-149 425
MS.gene42362.t1 MTR_5g036580 59.295 312 118 2 35 337 49 360 5.73e-139 400
MS.gene42362.t1 MTR_7g094230 60.396 303 111 2 35 337 51 344 9.23e-139 398
MS.gene42362.t1 MTR_4g118030 58.900 309 120 3 35 342 42 344 4.28e-137 393
MS.gene42362.t1 MTR_7g109210 59.295 312 122 3 35 344 51 359 1.58e-136 392
MS.gene42362.t1 MTR_6g008900 57.778 315 119 4 34 335 46 359 4.64e-134 387
MS.gene42362.t1 MTR_4g071620 57.778 315 119 4 34 335 46 359 4.64e-134 387
MS.gene42362.t1 MTR_1g089820 61.462 301 107 2 35 335 54 345 6.03e-134 385
MS.gene42362.t1 MTR_2g461670 34.375 192 115 6 143 333 395 576 2.88e-24 103
MS.gene42362.t1 MTR_4g109890 34.031 191 117 5 143 333 340 521 1.58e-22 98.6
MS.gene42362.t1 MTR_2g082650 30.303 198 122 8 143 333 209 397 3.31e-20 91.3
MS.gene42362.t1 MTR_2g082650 30.303 198 122 8 143 333 338 526 7.27e-20 90.9
MS.gene42362.t1 MTR_3g107930 28.283 198 133 5 143 340 469 657 1.23e-19 90.5
MS.gene42362.t1 MTR_3g107930 28.283 198 133 5 143 340 392 580 1.29e-19 90.1
MS.gene42362.t1 MTR_2g015550 31.522 184 119 5 143 326 339 515 1.95e-19 89.7
MS.gene42362.t1 MTR_4g133570 30.303 198 122 8 143 333 261 449 2.44e-19 89.0
MS.gene42362.t1 MTR_7g012370 30.387 181 113 7 143 316 334 508 2.51e-19 89.4
MS.gene42362.t1 MTR_7g055600 27.778 198 134 5 143 340 238 426 2.09e-18 86.3
MS.gene42362.t1 MTR_7g057530 27.778 198 134 5 143 340 238 426 2.09e-18 86.3
MS.gene42362.t1 MTR_8g092000 27.835 194 125 6 143 333 384 565 2.26e-18 86.7
MS.gene42362.t1 MTR_7g075840 26.768 198 136 5 143 340 468 656 8.61e-18 84.7
MS.gene42362.t1 MTR_2g027740 29.609 179 114 5 143 318 471 640 8.69e-18 84.7
MS.gene42362.t1 MTR_8g033360 30.345 145 98 3 143 287 437 578 5.34e-17 82.4
MS.gene42362.t1 MTR_6g016380 27.225 191 130 5 143 333 359 540 2.92e-15 77.0
MS.gene42362.t1 MTR_3g452360 26.699 206 122 8 143 333 175 366 3.86e-15 76.3
MS.gene42362.t1 MTR_7g096160 27.568 185 125 6 141 322 453 631 4.37e-15 76.6
MS.gene42362.t1 MTR_3g452360 26.699 206 122 8 143 333 324 515 4.45e-15 76.6
MS.gene42362.t1 MTR_6g013840 28.934 197 126 6 143 333 329 517 1.64e-13 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene42362.t1 AT1G19300 73.574 333 75 2 25 344 19 351 4.32e-171 479
MS.gene42362.t1 AT3G50760 71.656 314 83 3 33 340 23 336 5.74e-170 476
MS.gene42362.t1 AT4G02130 59.467 338 124 5 11 337 8 343 1.44e-144 412
MS.gene42362.t1 AT4G02130 59.467 338 124 5 11 337 8 343 1.44e-144 412
MS.gene42362.t1 AT4G02130 59.467 338 124 5 11 337 8 343 1.44e-144 412
MS.gene42362.t1 AT1G24170 59.621 317 114 2 35 337 50 366 6.83e-141 405
MS.gene42362.t1 AT3G06260 59.016 305 118 3 35 338 46 344 9.95e-140 400
MS.gene42362.t1 AT1G70090 56.305 341 133 4 13 337 23 363 6.38e-139 400
MS.gene42362.t1 AT1G70090 56.305 341 133 4 13 337 23 363 6.38e-139 400
MS.gene42362.t1 AT3G28340 60.390 308 116 3 37 338 44 351 1.30e-138 398
MS.gene42362.t1 AT1G02720 60.784 306 116 3 35 337 54 358 1.24e-136 393
MS.gene42362.t1 AT1G02720 60.784 306 116 3 35 337 54 358 1.24e-136 393
MS.gene42362.t1 AT1G13250 59.271 329 125 5 24 344 18 345 4.62e-136 390
MS.gene42362.t1 AT3G62660 63.036 303 107 3 35 335 56 355 4.79e-136 391
MS.gene42362.t1 AT1G18580 33.152 184 117 4 143 326 342 519 8.30e-23 99.8
MS.gene42362.t1 AT5G54690 30.303 198 122 8 143 333 331 519 5.56e-21 94.4
MS.gene42362.t1 AT3G61130 29.293 198 131 5 143 340 477 665 1.28e-20 93.6
MS.gene42362.t1 AT5G47780 31.148 183 114 5 143 322 420 593 1.32e-20 93.2
MS.gene42362.t1 AT3G58790 32.000 200 117 9 143 333 204 393 8.76e-20 90.1
MS.gene42362.t1 AT3G58790 32.000 200 117 9 143 333 336 525 9.95e-20 90.5
MS.gene42362.t1 AT3G25140 30.256 195 126 5 143 335 363 549 1.50e-19 90.1
MS.gene42362.t1 AT4G38270 29.167 192 130 4 143 334 480 665 5.46e-19 88.6
MS.gene42362.t1 AT4G38270 29.167 192 130 4 143 334 484 669 6.07e-19 88.6
MS.gene42362.t1 AT3G01040 27.411 197 129 6 143 333 296 484 9.15e-19 87.4
MS.gene42362.t1 AT3G01040 27.411 197 129 6 143 333 329 517 9.53e-19 87.4
MS.gene42362.t1 AT3G01040 27.411 197 129 6 143 333 329 517 9.53e-19 87.4
MS.gene42362.t1 AT5G15470 26.396 197 131 6 143 333 329 517 8.95e-18 84.7
MS.gene42362.t1 AT2G30575 30.726 179 115 6 143 318 411 583 1.19e-15 78.6
MS.gene42362.t1 AT1G06780 29.545 176 117 4 143 316 403 573 1.76e-15 77.8
MS.gene42362.t1 AT1G06780 29.545 176 117 4 143 316 390 560 2.63e-15 77.4
MS.gene42362.t1 AT2G46480 27.363 201 135 7 143 342 344 534 6.81e-15 75.9
MS.gene42362.t1 AT2G46480 27.363 201 135 7 143 342 357 547 7.46e-15 75.9
MS.gene42362.t1 AT2G20810 31.818 198 125 6 143 340 342 529 1.10e-14 75.5
MS.gene42362.t1 AT3G02350 28.272 191 128 5 143 333 365 546 2.98e-13 71.2

Find 88 sgRNAs with CRISPR-Local

Find 100 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATTTGCGTTACAATATTC+AGG 0.247981 3.1:+89178353 None:intergenic
TTTGGGGAATTGTAGAATTC+AGG 0.255717 3.1:+89178809 None:intergenic
TGCTAGTAGGCCTTGTCCTT+TGG 0.308844 3.1:-89177967 MS.gene42362:CDS
GGTCAAGAATCAAAAGAAAA+TGG 0.326719 3.1:+89177909 None:intergenic
GAGGATGAGAATCTATGAAT+TGG 0.329118 3.1:-89178165 MS.gene42362:CDS
TCGGTAATGGAAGGGCATTT+TGG 0.345746 3.1:+89178791 None:intergenic
TTGTCCTTTGGATGCACTCT+GGG 0.351159 3.1:-89177955 MS.gene42362:CDS
CTTGTCCTTTGGATGCACTC+TGG 0.356944 3.1:-89177956 MS.gene42362:CDS
ACGGAAAGTGGTAAGAGATT+TGG 0.363144 3.1:+89178473 None:intergenic
TGGAGTTTGCAATAGATCAT+AGG 0.375413 3.1:+89177929 None:intergenic
GTGAATAGAAATGCTGGTTT+TGG 0.387812 3.1:+89178902 None:intergenic
AGGTAAACCTTGGGTTAGAT+TGG 0.391202 3.1:-89177991 MS.gene42362:CDS
ACGGTAACAAGAAGAATAAT+AGG 0.398687 3.1:+89178870 None:intergenic
AAGATAAACAACACGGTTAA+CGG 0.410562 3.1:+89178454 None:intergenic
TGTCGAGTGTCATTGCTACT+TGG 0.413805 3.1:+89178744 None:intergenic
TGGTGTGATGGTGATTGATT+TGG 0.415675 3.1:-89178246 MS.gene42362:CDS
ATATTGCTCCGGTGGATCAT+AGG 0.416962 3.1:-89178106 MS.gene42362:CDS
GGGTTAGATTGGATGCTAGT+AGG 0.429415 3.1:-89177980 MS.gene42362:CDS
TATGATTGCGGCGCGTAGAT+TGG 0.429472 3.1:+89178619 None:intergenic
ATTTGGAACGATGGAGAGAA+GGG 0.431109 3.1:-89178229 MS.gene42362:CDS
GTCCTGTGAGTTTATTGCAT+TGG 0.436349 3.1:-89178022 MS.gene42362:CDS
AGGTGTAGAGATGGAATTTG+AGG 0.450425 3.1:+89178582 None:intergenic
ATCCACCGGAGCAATATTCC+CGG 0.454348 3.1:+89178112 None:intergenic
AGAGATGGAATTTGAGGTAG+GGG 0.460127 3.1:+89178588 None:intergenic
TTGGGGAATTGTAGAATTCA+GGG 0.471079 3.1:+89178810 None:intergenic
TGCAATAAACTCACAGGACC+GGG 0.478583 3.1:+89178026 None:intergenic
ACAATCGAGAGCGGAACGAA+TGG 0.481470 3.1:+89178523 None:intergenic
GAATTTGAGGTAGGGGAAGG+AGG 0.485363 3.1:+89178595 None:intergenic
AGGATGAGAATCTATGAATT+GGG 0.485666 3.1:-89178164 MS.gene42362:CDS
ATGGAATTTGAGGTAGGGGA+AGG 0.490148 3.1:+89178592 None:intergenic
ATTGGATGGAGTTGCAGAAG+AGG 0.491391 3.1:-89178184 MS.gene42362:CDS
TTCTTTGAATTGATGTGTGA+TGG 0.492513 3.1:+89178835 None:intergenic
GATTTGGAACGATGGAGAGA+AGG 0.499211 3.1:-89178230 MS.gene42362:CDS
TTTGTGGACATGATGAATGT+TGG 0.500526 3.1:+89178678 None:intergenic
GGATTATACTGCAAAGATTG+AGG 0.501023 3.1:-89178207 MS.gene42362:CDS
GTAGAGATGGAATTTGAGGT+AGG 0.502782 3.1:+89178586 None:intergenic
GTGTCATTGCTACTTGGACT+TGG 0.513792 3.1:+89178750 None:intergenic
AGAACTGTGAATAGAAATGC+TGG 0.520009 3.1:+89178896 None:intergenic
TTATTGCATTGGAGTGGGAA+AGG 0.522940 3.1:-89178011 MS.gene42362:CDS
TGCAAAGATTGAGGATTGGA+TGG 0.525594 3.1:-89178198 MS.gene42362:CDS
GGAGTTTGCAATAGATCATA+GGG 0.525702 3.1:+89177930 None:intergenic
GAGTGGGAAAGGTAAACCTT+GGG 0.526873 3.1:-89178000 MS.gene42362:CDS
ACAACACGGTTAACGGAAAG+TGG 0.532001 3.1:+89178461 None:intergenic
TTTGAAGTGTCGGTAATGGA+AGG 0.535342 3.1:+89178782 None:intergenic
GATTGATAAGATTGCTGCCA+TGG 0.540752 3.1:+89178703 None:intergenic
ATGCAATAAACTCACAGGAC+CGG 0.546673 3.1:+89178025 None:intergenic
GGAGTGGGAAAGGTAAACCT+TGG 0.549229 3.1:-89178001 MS.gene42362:CDS
ATCGAGAGCGGAACGAATGG+AGG 0.549641 3.1:+89178526 None:intergenic
AACATACATCCGAGGATCCA+TGG 0.555402 3.1:-89178720 MS.gene42362:CDS
GTGGACATGATGAATGTTGG+AGG 0.556533 3.1:+89178681 None:intergenic
TAGAGATGGAATTTGAGGTA+GGG 0.559827 3.1:+89178587 None:intergenic
TGCCGGGAATATTGCTCCGG+TGG 0.560558 3.1:-89178114 MS.gene42362:CDS
AGATTGCTGCCATGGATCCT+CGG 0.563959 3.1:+89178711 None:intergenic
TGTCATCAAAGGTGTAGAGA+TGG 0.565154 3.1:+89178573 None:intergenic
AAATTAGCAGAAACACCGTT+AGG 0.570033 3.1:-89178398 MS.gene42362:CDS
TTTGATGACACAACAGTCAC+CGG 0.571428 3.1:-89178560 MS.gene42362:CDS
GCGAAAGTAAGAGACAAAGA+AGG 0.574335 3.1:+89178296 None:intergenic
AGGTGGAATCAACATGGACT+TGG 0.575288 3.1:-89178086 MS.gene42362:CDS
ATACTGCAAAGATTGAGGAT+TGG 0.577186 3.1:-89178202 MS.gene42362:CDS
AATGGAGGTTGAGATGAGTC+CGG 0.579533 3.1:+89178541 None:intergenic
CTCCAATGCAATAAACTCAC+AGG 0.589994 3.1:+89178020 None:intergenic
AAGCCATGTTATTTCAACAC+TGG 0.592304 3.1:-89178266 MS.gene42362:CDS
CTTTGTAGAAATCTTCATCC+CGG 0.594004 3.1:-89178044 MS.gene42362:CDS
TGGAATCAACATGGACTTGG+TGG 0.600755 3.1:-89178083 MS.gene42362:CDS
CAGAGTGCATCCAAAGGACA+AGG 0.602258 3.1:+89177957 None:intergenic
TGAGTTTATTGCATTGGAGT+GGG 0.602915 3.1:-89178016 MS.gene42362:CDS
GTGAGTTTATTGCATTGGAG+TGG 0.603412 3.1:-89178017 MS.gene42362:CDS
TGATTCCACCTATGATCCAC+CGG 0.603497 3.1:+89178098 None:intergenic
TTGAAGTGTCGGTAATGGAA+GGG 0.609241 3.1:+89178783 None:intergenic
TTTGGAACGATGGAGAGAAG+GGG 0.611636 3.1:-89178228 MS.gene42362:CDS
TAGCTACGAGCGTAGTTGAG+AGG 0.614608 3.1:+89178500 None:intergenic
TTGCTCCGGTGGATCATAGG+TGG 0.620003 3.1:-89178103 MS.gene42362:CDS
TGGGGAATTGTAGAATTCAG+GGG 0.620014 3.1:+89178811 None:intergenic
GGTGACTGTTGTGTCATCAA+AGG 0.626334 3.1:+89178562 None:intergenic
TTATTTCAACACTGGTGTGA+TGG 0.626622 3.1:-89178258 MS.gene42362:CDS
CGTTTGATGAACAAACGAAG+TGG 0.629276 3.1:+89178645 None:intergenic
TGGTGATTGATTTGGAACGA+TGG 0.637244 3.1:-89178238 MS.gene42362:CDS
ACACCAGTGTTGAAATAACA+TGG 0.638418 3.1:+89178263 None:intergenic
GGGGAAGGAGGTTATGATTG+CGG 0.641133 3.1:+89178607 None:intergenic
CTAGCATCCAATCTAACCCA+AGG 0.642431 3.1:+89177984 None:intergenic
GATCATAGGTGGAATCAACA+TGG 0.645694 3.1:-89178092 MS.gene42362:CDS
CTTGGTGGTGATAATTTCCG+TGG 0.663363 3.1:-89178068 MS.gene42362:CDS
GGTGCCCAGAGTGCATCCAA+AGG 0.675740 3.1:+89177951 None:intergenic
GAAGATTTCTACAAAGACCA+CGG 0.676591 3.1:+89178051 None:intergenic
CTCGACACAACATACATCCG+AGG 0.680109 3.1:-89178728 MS.gene42362:CDS
GTTGAGAGGACAATCGAGAG+CGG 0.698957 3.1:+89178514 None:intergenic
CTGAATCAAGATAAACAACA+CGG 0.700753 3.1:+89178447 None:intergenic
GTGATGGTAGATGATAGACA+CGG 0.852270 3.1:+89178851 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AAATTTGCGTTACAATATTC+AGG + chr3.1:89178484-89178503 None:intergenic 25.0%
!!! CTTATTTTACTCAATCGTTT+TGG - chr3.1:89178509-89178528 MS.gene42362:CDS 25.0%
AAGATAAACAACACGGTTAA+CGG + chr3.1:89178383-89178402 None:intergenic 30.0%
ACGGTAACAAGAAGAATAAT+AGG + chr3.1:89177967-89177986 None:intergenic 30.0%
AGGATGAGAATCTATGAATT+GGG - chr3.1:89178670-89178689 MS.gene42362:CDS 30.0%
CTGAATCAAGATAAACAACA+CGG + chr3.1:89178390-89178409 None:intergenic 30.0%
TTCTTTGAATTGATGTGTGA+TGG + chr3.1:89178002-89178021 None:intergenic 30.0%
! AAAACAGAGTTTTCTCCTAA+CGG + chr3.1:89178454-89178473 None:intergenic 30.0%
! AAGTGGAAGAATATGTTTTG+TGG + chr3.1:89178175-89178194 None:intergenic 30.0%
AAATTAGCAGAAACACCGTT+AGG - chr3.1:89178436-89178455 MS.gene42362:CDS 35.0%
AGAACTGTGAATAGAAATGC+TGG + chr3.1:89177941-89177960 None:intergenic 35.0%
ATACTGCAAAGATTGAGGAT+TGG - chr3.1:89178632-89178651 MS.gene42362:CDS 35.0%
CTTTGTAGAAATCTTCATCC+CGG - chr3.1:89178790-89178809 MS.gene42362:CDS 35.0%
GAAGATTTCTACAAAGACCA+CGG + chr3.1:89178786-89178805 None:intergenic 35.0%
GAGGATGAGAATCTATGAAT+TGG - chr3.1:89178669-89178688 MS.gene42362:CDS 35.0%
GGAGTTTGCAATAGATCATA+GGG + chr3.1:89178907-89178926 None:intergenic 35.0%
GGATTATACTGCAAAGATTG+AGG - chr3.1:89178627-89178646 MS.gene42362:CDS 35.0%
TGAGTTTATTGCATTGGAGT+GGG - chr3.1:89178818-89178837 MS.gene42362:CDS 35.0%
TGGAGTTTGCAATAGATCAT+AGG + chr3.1:89178908-89178927 None:intergenic 35.0%
TTATTTCAACACTGGTGTGA+TGG - chr3.1:89178576-89178595 MS.gene42362:CDS 35.0%
TTGGGGAATTGTAGAATTCA+GGG + chr3.1:89178027-89178046 None:intergenic 35.0%
TTTGGGGAATTGTAGAATTC+AGG + chr3.1:89178028-89178047 None:intergenic 35.0%
TTTGTGGACATGATGAATGT+TGG + chr3.1:89178159-89178178 None:intergenic 35.0%
! ACACCAGTGTTGAAATAACA+TGG + chr3.1:89178574-89178593 None:intergenic 35.0%
! TAGAGATGGAATTTGAGGTA+GGG + chr3.1:89178250-89178269 None:intergenic 35.0%
!! AAGCCATGTTATTTCAACAC+TGG - chr3.1:89178568-89178587 MS.gene42362:CDS 35.0%
!!! AATAGAAATGCTGGTTTTGG+TGG + chr3.1:89177932-89177951 None:intergenic 35.0%
!!! GACTGTTGATTTTGAAGTGT+CGG + chr3.1:89178065-89178084 None:intergenic 35.0%
!!! GTGAATAGAAATGCTGGTTT+TGG + chr3.1:89177935-89177954 None:intergenic 35.0%
!!! TGATTTTGAAGTGTCGGTAA+TGG + chr3.1:89178059-89178078 None:intergenic 35.0%
ACGGAAAGTGGTAAGAGATT+TGG + chr3.1:89178364-89178383 None:intergenic 40.0%
AGGTGTAGAGATGGAATTTG+AGG + chr3.1:89178255-89178274 None:intergenic 40.0%
ATGCAATAAACTCACAGGAC+CGG + chr3.1:89178812-89178831 None:intergenic 40.0%
CCGGCAAAAACAAGCAAAAA+CGG + chr3.1:89178706-89178725 None:intergenic 40.0%
CGTTTGATGAACAAACGAAG+TGG + chr3.1:89178192-89178211 None:intergenic 40.0%
CTCCAATGCAATAAACTCAC+AGG + chr3.1:89178817-89178836 None:intergenic 40.0%
GATCATAGGTGGAATCAACA+TGG - chr3.1:89178742-89178761 MS.gene42362:CDS 40.0%
GATTGATAAGATTGCTGCCA+TGG + chr3.1:89178134-89178153 None:intergenic 40.0%
GCAAAAACAAGCAAAAACGG+TGG + chr3.1:89178703-89178722 None:intergenic 40.0%
GCGAAAGTAAGAGACAAAGA+AGG + chr3.1:89178541-89178560 None:intergenic 40.0%
GTCCTGTGAGTTTATTGCAT+TGG - chr3.1:89178812-89178831 MS.gene42362:CDS 40.0%
GTGAGTTTATTGCATTGGAG+TGG - chr3.1:89178817-89178836 MS.gene42362:CDS 40.0%
GTGATGGTAGATGATAGACA+CGG + chr3.1:89177986-89178005 None:intergenic 40.0%
TGCAAAGATTGAGGATTGGA+TGG - chr3.1:89178636-89178655 MS.gene42362:CDS 40.0%
TGGGGAATTGTAGAATTCAG+GGG + chr3.1:89178026-89178045 None:intergenic 40.0%
TTATTGCATTGGAGTGGGAA+AGG - chr3.1:89178823-89178842 MS.gene42362:CDS 40.0%
! AGAGATGGAATTTGAGGTAG+GGG + chr3.1:89178249-89178268 None:intergenic 40.0%
! AGGTAAACCTTGGGTTAGAT+TGG - chr3.1:89178843-89178862 MS.gene42362:CDS 40.0%
! ATTTGGAACGATGGAGAGAA+GGG - chr3.1:89178605-89178624 MS.gene42362:CDS 40.0%
! GTAGAGATGGAATTTGAGGT+AGG + chr3.1:89178251-89178270 None:intergenic 40.0%
! TGGTGTGATGGTGATTGATT+TGG - chr3.1:89178588-89178607 MS.gene42362:CDS 40.0%
! TGTCATCAAAGGTGTAGAGA+TGG + chr3.1:89178264-89178283 None:intergenic 40.0%
! TTTGATGACACAACAGTCAC+CGG - chr3.1:89178274-89178293 MS.gene42362:CDS 40.0%
!! TGGTGATTGATTTGGAACGA+TGG - chr3.1:89178596-89178615 MS.gene42362:CDS 40.0%
!! TTGAAGTGTCGGTAATGGAA+GGG + chr3.1:89178054-89178073 None:intergenic 40.0%
!! TTTGAAGTGTCGGTAATGGA+AGG + chr3.1:89178055-89178074 None:intergenic 40.0%
!!! CCGTTTTTGCTTGTTTTTGC+CGG - chr3.1:89178703-89178722 MS.gene42362:CDS 40.0%
!!! CGTTTTTGCTTGTTTTTGCC+GGG - chr3.1:89178704-89178723 MS.gene42362:CDS 40.0%
AACATACATCCGAGGATCCA+TGG - chr3.1:89178114-89178133 MS.gene42362:CDS 45.0%
AATGGAGGTTGAGATGAGTC+CGG + chr3.1:89178296-89178315 None:intergenic 45.0%
ACAACACGGTTAACGGAAAG+TGG + chr3.1:89178376-89178395 None:intergenic 45.0%
AGGTGGAATCAACATGGACT+TGG - chr3.1:89178748-89178767 MS.gene42362:CDS 45.0%
ATATTGCTCCGGTGGATCAT+AGG - chr3.1:89178728-89178747 MS.gene42362:CDS 45.0%
ATTGGATGGAGTTGCAGAAG+AGG - chr3.1:89178650-89178669 MS.gene42362:CDS 45.0%
CTAGCATCCAATCTAACCCA+AGG + chr3.1:89178853-89178872 None:intergenic 45.0%
GAGTGGGAAAGGTAAACCTT+GGG - chr3.1:89178834-89178853 MS.gene42362:CDS 45.0%
GGGTTAGATTGGATGCTAGT+AGG - chr3.1:89178854-89178873 MS.gene42362:CDS 45.0%
GGTGACTGTTGTGTCATCAA+AGG + chr3.1:89178275-89178294 None:intergenic 45.0%
GTGGACATGATGAATGTTGG+AGG + chr3.1:89178156-89178175 None:intergenic 45.0%
TGATTCCACCTATGATCCAC+CGG + chr3.1:89178739-89178758 None:intergenic 45.0%
TGCAATAAACTCACAGGACC+GGG + chr3.1:89178811-89178830 None:intergenic 45.0%
TGGAATCAACATGGACTTGG+TGG - chr3.1:89178751-89178770 MS.gene42362:CDS 45.0%
TTGTCCTTTGGATGCACTCT+GGG - chr3.1:89178879-89178898 MS.gene42362:CDS 45.0%
! ATGGAATTTGAGGTAGGGGA+AGG + chr3.1:89178245-89178264 None:intergenic 45.0%
! GATTTGGAACGATGGAGAGA+AGG - chr3.1:89178604-89178623 MS.gene42362:CDS 45.0%
! GTGTCATTGCTACTTGGACT+TGG + chr3.1:89178087-89178106 None:intergenic 45.0%
! TGTCGAGTGTCATTGCTACT+TGG + chr3.1:89178093-89178112 None:intergenic 45.0%
! TTTGGAACGATGGAGAGAAG+GGG - chr3.1:89178606-89178625 MS.gene42362:CDS 45.0%
! TTTTGCCGGGAATATTGCTC+CGG - chr3.1:89178717-89178736 MS.gene42362:CDS 45.0%
!! CTTGGTGGTGATAATTTCCG+TGG - chr3.1:89178766-89178785 MS.gene42362:CDS 45.0%
!!! CGGTAATGGAAGGGCATTTT+GGG + chr3.1:89178045-89178064 None:intergenic 45.0%
!!! GGTAATGGAAGGGCATTTTG+GGG + chr3.1:89178044-89178063 None:intergenic 45.0%
!!! TCGGTAATGGAAGGGCATTT+TGG + chr3.1:89178046-89178065 None:intergenic 45.0%
ACAATCGAGAGCGGAACGAA+TGG + chr3.1:89178314-89178333 None:intergenic 50.0%
AGATTGCTGCCATGGATCCT+CGG + chr3.1:89178126-89178145 None:intergenic 50.0%
ATCCACCGGAGCAATATTCC+CGG + chr3.1:89178725-89178744 None:intergenic 50.0%
CAGAGTGCATCCAAAGGACA+AGG + chr3.1:89178880-89178899 None:intergenic 50.0%
CTCGACACAACATACATCCG+AGG - chr3.1:89178106-89178125 MS.gene42362:CDS 50.0%
CTTGTCCTTTGGATGCACTC+TGG - chr3.1:89178878-89178897 MS.gene42362:CDS 50.0%
GGAGTGGGAAAGGTAAACCT+TGG - chr3.1:89178833-89178852 MS.gene42362:CDS 50.0%
GGGGAAGGAGGTTATGATTG+CGG + chr3.1:89178230-89178249 None:intergenic 50.0%
GTTGAGAGGACAATCGAGAG+CGG + chr3.1:89178323-89178342 None:intergenic 50.0%
TAGCTACGAGCGTAGTTGAG+AGG + chr3.1:89178337-89178356 None:intergenic 50.0%
TATGATTGCGGCGCGTAGAT+TGG + chr3.1:89178218-89178237 None:intergenic 50.0%
! GAATTTGAGGTAGGGGAAGG+AGG + chr3.1:89178242-89178261 None:intergenic 50.0%
! TGCTAGTAGGCCTTGTCCTT+TGG - chr3.1:89178867-89178886 MS.gene42362:CDS 50.0%
ATCGAGAGCGGAACGAATGG+AGG + chr3.1:89178311-89178330 None:intergenic 55.0%
TTGCTCCGGTGGATCATAGG+TGG - chr3.1:89178731-89178750 MS.gene42362:CDS 55.0%
GGTGCCCAGAGTGCATCCAA+AGG + chr3.1:89178886-89178905 None:intergenic 60.0%
TGCCGGGAATATTGCTCCGG+TGG - chr3.1:89178720-89178739 MS.gene42362:CDS 60.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 89177911 89178945 89177911 ID=MS.gene42362
chr3.1 mRNA 89177911 89178945 89177911 ID=MS.gene42362.t1;Parent=MS.gene42362
chr3.1 exon 89177911 89178945 89177911 ID=MS.gene42362.t1.exon1;Parent=MS.gene42362.t1
chr3.1 CDS 89177911 89178945 89177911 ID=cds.MS.gene42362.t1;Parent=MS.gene42362.t1
Gene Sequence

>MS.gene42362

ATGCAATCTAAATCAAAACCACCAAAACCAGCATTTCTATTCACAGTTCTAATCCTATTATTCTTCTTGTTACCGTGTCTATCATCTACCATCACACATCAATTCAAAGAAGCCCCTGAATTCTACAATTCCCCAAAATGCCCTTCCATTACCGACACTTCAAAATCAACAGTCCAAGTCCAAGTAGCAATGACACTCGACACAACATACATCCGAGGATCCATGGCAGCAATCTTATCAATCCTCCAACATTCATCATGTCCACAAAACATATTCTTCCACTTCGTTTGTTCATCAAACGCGTCCAATCTACGCGCCGCAATCATAACCTCCTTCCCCTACCTCAAATTCCATCTCTACACCTTTGATGACACAACAGTCACCGGACTCATCTCAACCTCCATTCGTTCCGCTCTCGATTGTCCTCTCAACTACGCTCGTAGCTACTTACCAAATCTCTTACCACTTTCCGTTAACCGTGTTGTTTATCTTGATTCAGATCTTATTCTTGTTGATGACATTGCAAAATTAGCAGAAACACCGTTAGGAGAAAACTCTGTTTTAGCAGCACCTGAATATTGTAACGCAAATTTCAGTTCTTATTTTACTCAATCGTTTTGGTCTAATCCTTCTTTGTCTCTTACTTTCGCAAATCGAAAGCCATGTTATTTCAACACTGGTGTGATGGTGATTGATTTGGAACGATGGAGAGAAGGGGATTATACTGCAAAGATTGAGGATTGGATGGAGTTGCAGAAGAGGATGAGAATCTATGAATTGGGTTCGTTGCCACCGTTTTTGCTTGTTTTTGCCGGGAATATTGCTCCGGTGGATCATAGGTGGAATCAACATGGACTTGGTGGTGATAATTTCCGTGGTCTTTGTAGAAATCTTCATCCCGGTCCTGTGAGTTTATTGCATTGGAGTGGGAAAGGTAAACCTTGGGTTAGATTGGATGCTAGTAGGCCTTGTCCTTTGGATGCACTCTGGGCACCCTATGATCTATTGCAAACTCCATTTTCTTTTGATTCTTGA
Protein sequence

>MS.gene42362.t1

MQSKSKPPKPAFLFTVLILLFFLLPCLSSTITHQFKEAPEFYNSPKCPSITDTSKSTVQVQVAMTLDTTYIRGSMAAILSILQHSSCPQNIFFHFVCSSNASNLRAAIITSFPYLKFHLYTFDDTTVTGLISTSIRSALDCPLNYARSYLPNLLPLSVNRVVYLDSDLILVDDIAKLAETPLGENSVLAAPEYCNANFSSYFTQSFWSNPSLSLTFANRKPCYFNTGVMVIDLERWREGDYTAKIEDWMELQKRMRIYELGSLPPFLLVFAGNIAPVDHRWNQHGLGGDNFRGLCRNLHPGPVSLLHWSGKGKPWVRLDASRPCPLDALWAPYDLLQTPFSFDS