Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42441.t1 | XP_024633118.1 | 89.7 | 595 | 47 | 4 | 1 | 595 | 1 | 581 | 2.70E-291 | 1011.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42441.t1 | Q8L7K4 | 62.8 | 180 | 67 | 0 | 595 | 774 | 73 | 252 | 1.4e-59 | 232.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42441.t1 | A0A072VIP0 | 89.4 | 595 | 47 | 5 | 1 | 595 | 1 | 579 | 2.0e-288 | 1001.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049861 | MS.gene42441 | 0.808174 | 3.53E-50 | -1.69E-46 |
| MS.gene05011 | MS.gene42441 | 0.80059 | 1.34E-48 | -1.69E-46 |
| MS.gene052434 | MS.gene42441 | 0.831001 | 2.14E-55 | -1.69E-46 |
| MS.gene056403 | MS.gene42441 | 0.806001 | 1.02E-49 | -1.69E-46 |
| MS.gene056605 | MS.gene42441 | 0.819693 | 1.02E-52 | -1.69E-46 |
| MS.gene057999 | MS.gene42441 | 0.805222 | 1.48E-49 | -1.69E-46 |
| MS.gene060937 | MS.gene42441 | 0.807054 | 6.10E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42441.t1 | MTR_1g055315 | 89.262 | 596 | 48 | 5 | 1 | 596 | 1 | 580 | 0.0 | 1058 |
| MS.gene42441.t1 | MTR_1g055315 | 88.280 | 529 | 48 | 4 | 68 | 596 | 1 | 515 | 0.0 | 934 |
| MS.gene42441.t1 | MTR_7g106640 | 58.629 | 423 | 154 | 6 | 1 | 422 | 1 | 403 | 1.93e-158 | 474 |
| MS.gene42441.t1 | MTR_7g106640 | 58.629 | 423 | 154 | 6 | 1 | 422 | 1 | 403 | 1.78e-157 | 474 |
| MS.gene42441.t1 | MTR_7g106640 | 38.191 | 199 | 115 | 3 | 380 | 578 | 506 | 696 | 6.50e-26 | 114 |
| MS.gene42441.t1 | MTR_7g106640 | 57.231 | 325 | 120 | 4 | 98 | 422 | 1 | 306 | 3.85e-117 | 367 |
| MS.gene42441.t1 | MTR_7g106640 | 38.191 | 199 | 115 | 3 | 380 | 578 | 409 | 599 | 8.38e-26 | 113 |
| MS.gene42441.t1 | MTR_1g055300 | 91.758 | 182 | 15 | 0 | 590 | 771 | 85 | 266 | 1.87e-114 | 349 |
| MS.gene42441.t1 | MTR_1g055300 | 91.034 | 145 | 13 | 0 | 590 | 734 | 85 | 229 | 1.40e-87 | 276 |
| MS.gene42441.t1 | MTR_7g106640 | 53.725 | 255 | 99 | 4 | 168 | 422 | 1 | 236 | 1.83e-72 | 246 |
| MS.gene42441.t1 | MTR_7g106640 | 38.191 | 199 | 115 | 3 | 380 | 578 | 339 | 529 | 7.98e-26 | 113 |
| MS.gene42441.t1 | MTR_2g066850 | 46.383 | 235 | 100 | 5 | 123 | 356 | 732 | 941 | 3.72e-45 | 175 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42441.t1 | AT5G06440 | 57.632 | 321 | 120 | 6 | 1 | 319 | 1 | 307 | 6.37e-123 | 377 |
| MS.gene42441.t1 | AT5G06440 | 57.632 | 321 | 120 | 6 | 1 | 319 | 1 | 307 | 6.37e-123 | 377 |
| MS.gene42441.t1 | AT5G06440 | 55.793 | 328 | 122 | 7 | 1 | 319 | 1 | 314 | 6.38e-119 | 367 |
| MS.gene42441.t1 | AT5G06440 | 58.099 | 284 | 104 | 5 | 1 | 282 | 1 | 271 | 1.96e-110 | 338 |
| MS.gene42441.t1 | AT3G11720 | 41.099 | 455 | 215 | 11 | 1 | 444 | 1 | 413 | 3.51e-109 | 343 |
| MS.gene42441.t1 | AT3G11720 | 41.099 | 455 | 215 | 11 | 1 | 444 | 1 | 413 | 3.51e-109 | 343 |
| MS.gene42441.t1 | AT3G11720 | 41.280 | 453 | 213 | 11 | 1 | 442 | 55 | 465 | 3.37e-108 | 343 |
| MS.gene42441.t1 | AT5G06440 | 62.661 | 233 | 83 | 3 | 87 | 319 | 5 | 233 | 2.43e-101 | 318 |
| MS.gene42441.t1 | AT5G06440 | 63.063 | 222 | 78 | 3 | 98 | 319 | 1 | 218 | 1.81e-97 | 308 |
| MS.gene42441.t1 | AT3G11720 | 41.643 | 353 | 167 | 8 | 98 | 444 | 1 | 320 | 1.32e-87 | 284 |
| MS.gene42441.t1 | AT5G06410 | 62.778 | 180 | 67 | 0 | 595 | 774 | 73 | 252 | 6.03e-77 | 249 |
Find 162 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTCCAATATATCTTTATT+TGG | 0.153676 | 1.4:+46785553 | None:intergenic |
| AGCATCATGGGAACCCTTTC+TGG | 0.171527 | 1.4:-46787995 | MS.gene42441:CDS |
| CCAGGTTGGTTCATATTCTT+TGG | 0.225748 | 1.4:-46785171 | MS.gene42441:CDS |
| GTTACCTCTGCTAATAATTC+TGG | 0.226330 | 1.4:+46780389 | None:intergenic |
| TATGGCTCCTTCAGGTATTC+AGG | 0.239648 | 1.4:-46785281 | MS.gene42441:intron |
| TTTGGACAGTGGCGCGATTA+TGG | 0.252117 | 1.4:-46785153 | MS.gene42441:CDS |
| TTGTAGGACAATAGCGAATA+TGG | 0.275278 | 1.4:-46787663 | MS.gene42441:intron |
| TTGAGTGAGATTGTAGAATT+AGG | 0.277561 | 1.4:-46785886 | MS.gene42441:CDS |
| AGCACAATCACCTTAAGTTT+TGG | 0.278051 | 1.4:+46785494 | None:intergenic |
| GGATTTATTTCCTTTAAGTT+TGG | 0.290070 | 1.4:+46785251 | None:intergenic |
| CAGTGTTCGGTTGCTTGTTT+CGG | 0.304274 | 1.4:+46785117 | None:intergenic |
| GTGATATTTGTTCCCCAATC+TGG | 0.308030 | 1.4:+46788337 | None:intergenic |
| TCCTGCAGATTATGGAAATC+AGG | 0.317640 | 1.4:-46779659 | MS.gene42441:intron |
| CATGCAAGGGGACCCATCTT+TGG | 0.320178 | 1.4:+46785654 | None:intergenic |
| CTTCTTCAAAGTCCCGCTTT+TGG | 0.322648 | 1.4:+46779404 | None:intergenic |
| ATTTGTTAGTTGAAGCTTGA+TGG | 0.324638 | 1.4:-46780446 | MS.gene42441:intron |
| CCAACTTTCTCATTTCGAAT+TGG | 0.326024 | 1.4:+46785811 | None:intergenic |
| AATTGTTGTTCTTACGAATT+CGG | 0.343897 | 1.4:-46788130 | MS.gene42441:intron |
| GTTGGTGCAATTGTACAAAA+AGG | 0.347121 | 1.4:-46785793 | MS.gene42441:CDS |
| ATATCGATTACATTCTGATA+TGG | 0.368450 | 1.4:-46785692 | MS.gene42441:CDS |
| TCCCTTTCATACAATGTTAG+TGG | 0.371335 | 1.4:-46789236 | MS.gene42441:CDS |
| GGTACCAAATAAAGATATAT+TGG | 0.374923 | 1.4:-46785557 | MS.gene42441:CDS |
| CTATCAGAGCAGAGTCTTGC+CGG | 0.378135 | 1.4:-46785209 | MS.gene42441:CDS |
| AAAGAAACTACATCCTGATT+TGG | 0.379604 | 1.4:-46781003 | MS.gene42441:CDS |
| AGGAATAGATCCAAACTTAA+AGG | 0.382257 | 1.4:-46785261 | MS.gene42441:CDS |
| AGAAGAATTCAGCAAGGCCT+TGG | 0.384310 | 1.4:-46786145 | MS.gene42441:CDS |
| AGAGTTGGAATCACTTTGTT+GGG | 0.386815 | 1.4:+46785230 | None:intergenic |
| CTAACTTTCTAGATATGTTA+AGG | 0.386935 | 1.4:-46789703 | MS.gene42441:CDS |
| ACGAAAGATTGTGCAGTATA+GGG | 0.388133 | 1.4:-46790228 | MS.gene42441:CDS |
| GAGGATGATGAGAAAGTAAA+TGG | 0.388969 | 1.4:-46785838 | MS.gene42441:CDS |
| AATAGCGAATATGGATATAA+AGG | 0.391283 | 1.4:-46787654 | MS.gene42441:CDS |
| CCCATGATGCTCTTCGACTC+AGG | 0.391541 | 1.4:+46788007 | None:intergenic |
| CCTTGATAAACTTTATTTCA+AGG | 0.392531 | 1.4:-46787613 | MS.gene42441:CDS |
| CTTCTTCCAATAGTTAAAAC+AGG | 0.395022 | 1.4:-46789305 | MS.gene42441:intron |
| CAAGCAACCGAACACTGATT+TGG | 0.395540 | 1.4:-46785111 | MS.gene42441:CDS |
| CTCACGACATCCTTCACTTC+AGG | 0.396279 | 1.4:+46787953 | None:intergenic |
| TTGGTTCTGTGCAGAATATA+AGG | 0.396321 | 1.4:-46789759 | MS.gene42441:intron |
| GCTTGTTTCGGCATGTTGTT+TGG | 0.411877 | 1.4:+46785129 | None:intergenic |
| GTTTACAGAAGGTCCAGATT+GGG | 0.415039 | 1.4:-46788350 | MS.gene42441:CDS |
| CGCTGATGCTTTCCAAAAGC+GGG | 0.419435 | 1.4:-46779416 | MS.gene42441:CDS |
| CTAATACATCACAAAATGAT+TGG | 0.420944 | 1.4:-46789655 | MS.gene42441:CDS |
| AACGAAAGATTGTGCAGTAT+AGG | 0.423682 | 1.4:-46790229 | MS.gene42441:CDS |
| GAAGAATTCAGCAAGGCCTT+GGG | 0.429545 | 1.4:-46786144 | MS.gene42441:CDS |
| ATCTCAACATTTGTAAGATC+AGG | 0.432552 | 1.4:+46790179 | None:intergenic |
| CATCAGAAAGAAGTTACTTT+CGG | 0.436473 | 1.4:-46787892 | MS.gene42441:intron |
| TCGAGCAGCTTTGCCAAAGA+TGG | 0.436494 | 1.4:-46785667 | MS.gene42441:CDS |
| TAGAGTTGGAATCACTTTGT+TGG | 0.441452 | 1.4:+46785229 | None:intergenic |
| TTTGGTGCATTCAAAATCTC+AGG | 0.443830 | 1.4:-46780985 | MS.gene42441:intron |
| TGTTTACAGAAGGTCCAGAT+TGG | 0.445526 | 1.4:-46788351 | MS.gene42441:CDS |
| TGTAACTTACAAACATCAAC+AGG | 0.447445 | 1.4:+46789196 | None:intergenic |
| GGATGTCGTGAGAGTTGATT+TGG | 0.451455 | 1.4:-46787942 | MS.gene42441:CDS |
| ATATTCTCTAATCATTGAAA+TGG | 0.454965 | 1.4:+46785711 | None:intergenic |
| TGATTTGGAGGGGAAGTACA+AGG | 0.458896 | 1.4:-46781033 | MS.gene42441:CDS |
| CTTTCAACAAGGTATTCAGC+AGG | 0.462678 | 1.4:+46786018 | None:intergenic |
| TTTCGTGGCCTCTGTCTTCG+AGG | 0.463033 | 1.4:-46788200 | MS.gene42441:CDS |
| TATCAGCTCAGATGTCAAAC+AGG | 0.464812 | 1.4:-46785755 | MS.gene42441:CDS |
| TCATCTTCTAATTCTGATGA+TGG | 0.467744 | 1.4:+46790125 | None:intergenic |
| TTTATTTCAAGGCAGCTCAT+TGG | 0.469289 | 1.4:-46787602 | MS.gene42441:CDS |
| CCTTGAAATAAAGTTTATCA+AGG | 0.469741 | 1.4:+46787613 | None:intergenic |
| CCAATTCGAAATGAGAAAGT+TGG | 0.474583 | 1.4:-46785811 | MS.gene42441:CDS |
| TACCTTGTTGAAAGTAAGCC+AGG | 0.477288 | 1.4:-46786009 | MS.gene42441:CDS |
| GGAAGAGATTATACAAAGTG+TGG | 0.479943 | 1.4:-46785860 | MS.gene42441:CDS |
| TGAAGGAGAAAATGCATAGT+TGG | 0.480321 | 1.4:-46779450 | MS.gene42441:CDS |
| ACTCTGGCATCCAAAACTTA+AGG | 0.483606 | 1.4:-46785504 | MS.gene42441:intron |
| TAGTCATTAGAACGATCAAC+AGG | 0.483922 | 1.4:+46781924 | None:intergenic |
| AATGTTAGTGGAAGGCTTTG+TGG | 0.487941 | 1.4:-46789224 | MS.gene42441:CDS |
| CGGACCTACTGAGGCAAGCC+AGG | 0.494719 | 1.4:-46785189 | MS.gene42441:CDS |
| TGTCATCTGAAGACATGTCT+TGG | 0.497622 | 1.4:+46785087 | None:intergenic |
| TTCCACTAACATTGTATGAA+AGG | 0.498448 | 1.4:+46789234 | None:intergenic |
| TTATTATACTCGTGTAATTG+AGG | 0.500529 | 1.4:-46779356 | MS.gene42441:CDS |
| CAAAGATGGGTCCCCTTGCA+TGG | 0.502640 | 1.4:-46785653 | MS.gene42441:CDS |
| GAAATAAAGTTTATCAAGGA+TGG | 0.510256 | 1.4:+46787617 | None:intergenic |
| TCTTGGACCAAATCAGTGTT+CGG | 0.511411 | 1.4:+46785104 | None:intergenic |
| CTGGCTTGCCTCAGTAGGTC+CGG | 0.514534 | 1.4:+46785190 | None:intergenic |
| GTTGAATGCAGCGACACGAC+TGG | 0.516957 | 1.4:+46781946 | None:intergenic |
| TTTCAGGTTTATGTATCTCA+TGG | 0.519297 | 1.4:-46789074 | MS.gene42441:intron |
| CTTCTAATTCTGATGATGGT+AGG | 0.520149 | 1.4:+46790129 | None:intergenic |
| TCCACTAACATTGTATGAAA+GGG | 0.522752 | 1.4:+46789235 | None:intergenic |
| CCTGAGTCGAAGAGCATCAT+GGG | 0.525362 | 1.4:-46788007 | MS.gene42441:CDS |
| CCTGCAGATTATGGAAATCA+GGG | 0.533197 | 1.4:-46779658 | MS.gene42441:intron |
| TTTCATACAATGTTAGTGGA+AGG | 0.533564 | 1.4:-46789232 | MS.gene42441:CDS |
| TGAGATTGTAGAATTAGGTG+AGG | 0.535511 | 1.4:-46785881 | MS.gene42441:CDS |
| AGAGTTAGTTGCTTCTTCAA+CGG | 0.538397 | 1.4:+46779632 | None:intergenic |
| CACGACTGGCAGAACAAGAA+AGG | 0.538953 | 1.4:+46781960 | None:intergenic |
| AGGAGTACTTCAGATGATCA+TGG | 0.539089 | 1.4:-46789683 | MS.gene42441:CDS |
| CCATGATGCTCTTCGACTCA+GGG | 0.540019 | 1.4:+46788008 | None:intergenic |
| TCAAGGCAGCTCATTGGCAA+TGG | 0.540578 | 1.4:-46787596 | MS.gene42441:CDS |
| CGAGCAGCTTTGCCAAAGAT+GGG | 0.543231 | 1.4:-46785666 | MS.gene42441:CDS |
| ACCAAATAAAGATATATTGG+AGG | 0.544818 | 1.4:-46785554 | MS.gene42441:CDS |
| TTCGTGGCCTCTGTCTTCGA+GGG | 0.545193 | 1.4:-46788199 | MS.gene42441:CDS |
| AGACTCTGCTCTGATAGAGT+TGG | 0.545963 | 1.4:+46785215 | None:intergenic |
| AAGAAAGGATGAAGGTTTCG+TGG | 0.545994 | 1.4:-46788215 | MS.gene42441:intron |
| TACATCACAAAATGATTGGA+AGG | 0.546178 | 1.4:-46789651 | MS.gene42441:intron |
| ATGTAAATTGCTCTTGACAA+AGG | 0.547068 | 1.4:+46780722 | None:intergenic |
| CCCTGAGTCGAAGAGCATCA+TGG | 0.547608 | 1.4:-46788008 | MS.gene42441:CDS |
| GGGAGGCTTTGCTTTGCAGA+AGG | 0.548882 | 1.4:-46787918 | MS.gene42441:CDS |
| TGTCGTCGTTGAAACCAGAA+AGG | 0.553125 | 1.4:+46787981 | None:intergenic |
| TTGTAAGATCAGGTGAGGCA+AGG | 0.553784 | 1.4:+46790189 | None:intergenic |
| GGGAGAGGAAGTATGACGTA+GGG | 0.556684 | 1.4:-46781061 | MS.gene42441:CDS |
| TAATGTCATGCCACTGACAA+TGG | 0.561994 | 1.4:-46785938 | MS.gene42441:CDS |
| ATGACAAAGTCAAGTCAAGA+AGG | 0.562383 | 1.4:-46785070 | MS.gene42441:CDS |
| TTCCAATAGTTAAAACAGGA+TGG | 0.564355 | 1.4:-46789301 | MS.gene42441:intron |
| CCAACCTGGCTTGCCTCAGT+AGG | 0.565505 | 1.4:+46785185 | None:intergenic |
| TGTTATGTATCGTGAAGGAC+TGG | 0.566818 | 1.4:-46789266 | MS.gene42441:CDS |
| ATCTTTGGCAAAGCTGCTCG+AGG | 0.567403 | 1.4:+46785669 | None:intergenic |
| ATCATGTGAATGTTTACAGA+AGG | 0.570979 | 1.4:-46788361 | MS.gene42441:CDS |
| GAAGCACGTTCGACACACTC+TGG | 0.571822 | 1.4:-46785520 | MS.gene42441:CDS |
| TGTAAGATCAGGTGAGGCAA+GGG | 0.572242 | 1.4:+46790190 | None:intergenic |
| AAAGATGGGTCCCCTTGCAT+GGG | 0.574113 | 1.4:-46785652 | MS.gene42441:CDS |
| CACGACTACTAGTGCATCAG+AGG | 0.576208 | 1.4:-46786082 | MS.gene42441:CDS |
| CCTACTGAGGCAAGCCAGGT+TGG | 0.578292 | 1.4:-46785185 | MS.gene42441:CDS |
| TCATCAGAATTAGAAGATGA+AGG | 0.578946 | 1.4:-46790122 | MS.gene42441:CDS |
| GTCGTGAGAGTTGATTTGGT+GGG | 0.584180 | 1.4:-46787938 | MS.gene42441:CDS |
| TTTACAGAAGGTCCAGATTG+GGG | 0.585785 | 1.4:-46788349 | MS.gene42441:CDS |
| TCGCTGATGCTTTCCAAAAG+CGG | 0.587877 | 1.4:-46779417 | MS.gene42441:CDS |
| CCAAAGAATATGAACCAACC+TGG | 0.590279 | 1.4:+46785171 | None:intergenic |
| AGATCCAGAATTATTAGCAG+AGG | 0.590429 | 1.4:-46780393 | MS.gene42441:intron |
| TTTGTCAAGAGCAATTTACA+TGG | 0.593720 | 1.4:-46780720 | MS.gene42441:intron |
| CGACACAATTCCTGAAGTGA+AGG | 0.593796 | 1.4:-46787963 | MS.gene42441:CDS |
| TGGTTTCAGACTTTATCAGA+AGG | 0.594007 | 1.4:-46787576 | MS.gene42441:intron |
| GAATTAGAAGATGAAGGTGG+TGG | 0.595677 | 1.4:-46790116 | MS.gene42441:intron |
| CCAAATAAAGATATATTGGA+GGG | 0.596929 | 1.4:-46785553 | MS.gene42441:CDS |
| GGTTCATATTCTTTGGACAG+TGG | 0.601042 | 1.4:-46785164 | MS.gene42441:CDS |
| TTTCAACAAGGTATTCAGCA+GGG | 0.601536 | 1.4:+46786019 | None:intergenic |
| AAGAATTCAGCAAGGCCTTG+GGG | 0.602284 | 1.4:-46786143 | MS.gene42441:CDS |
| GTCGTCGTTGAAACCAGAAA+GGG | 0.604576 | 1.4:+46787982 | None:intergenic |
| GTGAGAGTTGATTTGGTGGG+AGG | 0.607591 | 1.4:-46787935 | MS.gene42441:CDS |
| TTAGTTGAAGCTTGATGGAG+TGG | 0.608425 | 1.4:-46780441 | MS.gene42441:intron |
| CACCTGGCTTACTTTCAACA+AGG | 0.612895 | 1.4:+46786007 | None:intergenic |
| TTTCGTGTTATGTATCGTGA+AGG | 0.614952 | 1.4:-46789271 | MS.gene42441:CDS |
| AGATTGTGCAGTATAGGGAG+AGG | 0.617001 | 1.4:-46790223 | MS.gene42441:CDS |
| AGAGATTATACAAAGTGTGG+AGG | 0.618599 | 1.4:-46785857 | MS.gene42441:CDS |
| GAGTCTTGCCGGACCTACTG+AGG | 0.619392 | 1.4:-46785198 | MS.gene42441:CDS |
| TTAGTGGAAGGCTTTGTGGA+CGG | 0.620121 | 1.4:-46789220 | MS.gene42441:CDS |
| AACATTTGTAAGATCAGGTG+AGG | 0.620685 | 1.4:+46790184 | None:intergenic |
| TGTCGTGAGAGTTGATTTGG+TGG | 0.621107 | 1.4:-46787939 | MS.gene42441:CDS |
| AGCGAATATGGATATAAAGG+TGG | 0.622613 | 1.4:-46787651 | MS.gene42441:CDS |
| TTTGAATCAGATTCGCTCTG+AGG | 0.623474 | 1.4:-46779604 | MS.gene42441:intron |
| ATAAAGTTTATCAAGGATGG+AGG | 0.627020 | 1.4:+46787620 | None:intergenic |
| GGGAACAAATATCACTAGTG+AGG | 0.629788 | 1.4:-46788329 | MS.gene42441:intron |
| GCATCAGAGGTTGCAAATAG+CGG | 0.632157 | 1.4:-46786069 | MS.gene42441:CDS |
| TTGCGAATTCTAGCATACAA+TGG | 0.633231 | 1.4:+46786117 | None:intergenic |
| ATTGTATGCTAGAATTCGCA+AGG | 0.634051 | 1.4:-46786115 | MS.gene42441:CDS |
| ACGGTTGCATCCATTGTCAG+TGG | 0.634936 | 1.4:+46785928 | None:intergenic |
| GTACTTCAGATGATCATGGA+AGG | 0.636905 | 1.4:-46789679 | MS.gene42441:CDS |
| TATGTATCGTGAAGGACTGG+AGG | 0.640574 | 1.4:-46789263 | MS.gene42441:CDS |
| GGCTATAGAAACATTAGACA+AGG | 0.647239 | 1.4:-46785734 | MS.gene42441:CDS |
| TGGAGGGGAAGTACAAGGAG+TGG | 0.648704 | 1.4:-46781028 | MS.gene42441:CDS |
| GAGAGGAAGTATGACGTAGG+GGG | 0.650683 | 1.4:-46781059 | MS.gene42441:CDS |
| TGATGGAGTGGAAGTTGATG+AGG | 0.658748 | 1.4:-46780429 | MS.gene42441:CDS |
| ACTAACACCATTGTGACTCG+AGG | 0.660623 | 1.4:-46785038 | MS.gene42441:intron |
| AAAGTAGGAATTGTAGACTG+AGG | 0.661096 | 1.4:+46788393 | None:intergenic |
| ATGTATCGTGAAGGACTGGA+GGG | 0.666806 | 1.4:-46789262 | MS.gene42441:CDS |
| AGACATACCTCGAGTCACAA+TGG | 0.669331 | 1.4:+46785031 | None:intergenic |
| AGAATTCAGCAAGGCCTTGG+GGG | 0.674619 | 1.4:-46786142 | MS.gene42441:CDS |
| AGGGAGAGGAAGTATGACGT+AGG | 0.675106 | 1.4:-46781062 | MS.gene42441:CDS |
| GGAGAGGAAGTATGACGTAG+GGG | 0.690725 | 1.4:-46781060 | MS.gene42441:CDS |
| ACAGCTTCCCTCGAAGACAG+AGG | 0.692663 | 1.4:+46788192 | None:intergenic |
| TGAAGAAGCAACTAACTCTG+AGG | 0.709047 | 1.4:-46779628 | MS.gene42441:CDS |
| TCAGAATTAGAAGATGAAGG+TGG | 0.714216 | 1.4:-46790119 | MS.gene42441:CDS |
| TGATAAAGAAGAATTCAGCA+AGG | 0.714264 | 1.4:-46786151 | MS.gene42441:CDS |
| CTTGTTGAAAGTAAGCCAGG+TGG | 0.717879 | 1.4:-46786006 | MS.gene42441:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 46779336 | 46790261 | 46779336 | ID=MS.gene42441 |
| chr1.4 | mRNA | 46779336 | 46790261 | 46779336 | ID=MS.gene42441.t1;Parent=MS.gene42441 |
| chr1.4 | exon | 46790117 | 46790261 | 46790117 | ID=MS.gene42441.t1.exon1;Parent=MS.gene42441.t1 |
| chr1.4 | CDS | 46790117 | 46790261 | 46790117 | ID=cds.MS.gene42441.t1;Parent=MS.gene42441.t1 |
| chr1.4 | exon | 46789652 | 46789767 | 46789652 | ID=MS.gene42441.t1.exon2;Parent=MS.gene42441.t1 |
| chr1.4 | CDS | 46789652 | 46789767 | 46789652 | ID=cds.MS.gene42441.t1;Parent=MS.gene42441.t1 |
| chr1.4 | exon | 46789206 | 46789314 | 46789206 | ID=MS.gene42441.t1.exon3;Parent=MS.gene42441.t1 |
| chr1.4 | CDS | 46789206 | 46789314 | 46789206 | ID=cds.MS.gene42441.t1;Parent=MS.gene42441.t1 |
| chr1.4 | exon | 46789051 | 46789090 | 46789051 | ID=MS.gene42441.t1.exon4;Parent=MS.gene42441.t1 |
| chr1.4 | CDS | 46789051 | 46789090 | 46789051 | ID=cds.MS.gene42441.t1;Parent=MS.gene42441.t1 |
| chr1.4 | exon | 46788330 | 46788419 | 46788330 | ID=MS.gene42441.t1.exon5;Parent=MS.gene42441.t1 |
| chr1.4 | CDS | 46788330 | 46788419 | 46788330 | ID=cds.MS.gene42441.t1;Parent=MS.gene42441.t1 |
| chr1.4 | exon | 46788131 | 46788230 | 46788131 | ID=MS.gene42441.t1.exon6;Parent=MS.gene42441.t1 |
| chr1.4 | CDS | 46788131 | 46788230 | 46788131 | ID=cds.MS.gene42441.t1;Parent=MS.gene42441.t1 |
| chr1.4 | exon | 46787893 | 46788032 | 46787893 | ID=MS.gene42441.t1.exon7;Parent=MS.gene42441.t1 |
| chr1.4 | CDS | 46787893 | 46788032 | 46787893 | ID=cds.MS.gene42441.t1;Parent=MS.gene42441.t1 |
| chr1.4 | exon | 46787577 | 46787679 | 46787577 | ID=MS.gene42441.t1.exon8;Parent=MS.gene42441.t1 |
| chr1.4 | CDS | 46787577 | 46787679 | 46787577 | ID=cds.MS.gene42441.t1;Parent=MS.gene42441.t1 |
| chr1.4 | exon | 46785505 | 46786196 | 46785505 | ID=MS.gene42441.t1.exon9;Parent=MS.gene42441.t1 |
| chr1.4 | CDS | 46785505 | 46786196 | 46785505 | ID=cds.MS.gene42441.t1;Parent=MS.gene42441.t1 |
| chr1.4 | exon | 46785039 | 46785289 | 46785039 | ID=MS.gene42441.t1.exon10;Parent=MS.gene42441.t1 |
| chr1.4 | CDS | 46785039 | 46785289 | 46785039 | ID=cds.MS.gene42441.t1;Parent=MS.gene42441.t1 |
| chr1.4 | exon | 46781906 | 46781984 | 46781906 | ID=MS.gene42441.t1.exon11;Parent=MS.gene42441.t1 |
| chr1.4 | CDS | 46781906 | 46781984 | 46781906 | ID=cds.MS.gene42441.t1;Parent=MS.gene42441.t1 |
| chr1.4 | exon | 46780986 | 46781082 | 46780986 | ID=MS.gene42441.t1.exon12;Parent=MS.gene42441.t1 |
| chr1.4 | CDS | 46780986 | 46781082 | 46780986 | ID=cds.MS.gene42441.t1;Parent=MS.gene42441.t1 |
| chr1.4 | exon | 46780721 | 46780810 | 46780721 | ID=MS.gene42441.t1.exon13;Parent=MS.gene42441.t1 |
| chr1.4 | CDS | 46780721 | 46780810 | 46780721 | ID=cds.MS.gene42441.t1;Parent=MS.gene42441.t1 |
| chr1.4 | exon | 46780394 | 46780459 | 46780394 | ID=MS.gene42441.t1.exon14;Parent=MS.gene42441.t1 |
| chr1.4 | CDS | 46780394 | 46780459 | 46780394 | ID=cds.MS.gene42441.t1;Parent=MS.gene42441.t1 |
| chr1.4 | exon | 46779605 | 46779673 | 46779605 | ID=MS.gene42441.t1.exon15;Parent=MS.gene42441.t1 |
| chr1.4 | CDS | 46779605 | 46779673 | 46779605 | ID=cds.MS.gene42441.t1;Parent=MS.gene42441.t1 |
| chr1.4 | exon | 46779336 | 46779473 | 46779336 | ID=MS.gene42441.t1.exon16;Parent=MS.gene42441.t1 |
| chr1.4 | CDS | 46779336 | 46779473 | 46779336 | ID=cds.MS.gene42441.t1;Parent=MS.gene42441.t1 |
| Gene Sequence |
| Protein sequence |
