Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05011.t1 | XP_003600668.2 | 98.2 | 511 | 8 | 1 | 7 | 516 | 1 | 511 | 2.10E-287 | 997.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05011.t1 | Q6P2Z6 | 46.3 | 497 | 246 | 10 | 21 | 507 | 13 | 498 | 3.7e-120 | 433.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05011.t1 | G7J8P2 | 98.2 | 511 | 8 | 1 | 7 | 516 | 1 | 511 | 1.5e-287 | 997.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049715 | MS.gene05011 | 0.987006 | 9.98E-169 | -1.69E-46 |
| MS.gene05011 | MS.gene059901 | -0.808544 | 2.94E-50 | -1.69E-46 |
| MS.gene05011 | MS.gene42441 | 0.80059 | 1.34E-48 | -1.69E-46 |
| MS.gene05011 | MS.gene62926 | 0.800943 | 1.14E-48 | -1.69E-46 |
| MS.gene05011 | MS.gene82421 | 0.801783 | 7.65E-49 | -1.69E-46 |
| MS.gene05011 | MS.gene84677 | 0.812964 | 3.25E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene021568 | MS.gene05011 | PPI |
| MS.gene54064 | MS.gene05011 | PPI |
| MS.gene86289 | MS.gene05011 | PPI |
| MS.gene015887 | MS.gene05011 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05011.t1 | MTR_3g064880 | 98.239 | 511 | 8 | 1 | 7 | 516 | 1 | 511 | 0.0 | 1044 |
| MS.gene05011.t1 | MTR_4g107030 | 71.183 | 465 | 73 | 7 | 1 | 455 | 1 | 414 | 0.0 | 652 |
| MS.gene05011.t1 | MTR_5g091890 | 59.901 | 404 | 157 | 3 | 19 | 420 | 14 | 414 | 3.48e-171 | 492 |
| MS.gene05011.t1 | MTR_5g089690 | 37.158 | 366 | 169 | 11 | 164 | 496 | 5 | 342 | 8.35e-59 | 198 |
| MS.gene05011.t1 | MTR_5g090460 | 38.053 | 339 | 165 | 11 | 171 | 493 | 23 | 332 | 3.90e-58 | 196 |
| MS.gene05011.t1 | MTR_5g091160 | 36.565 | 361 | 177 | 9 | 164 | 496 | 5 | 341 | 3.65e-57 | 194 |
| MS.gene05011.t1 | MTR_5g090030 | 40.647 | 278 | 139 | 5 | 219 | 493 | 23 | 277 | 5.39e-54 | 183 |
| MS.gene05011.t1 | MTR_5g011640 | 33.067 | 375 | 181 | 11 | 164 | 496 | 5 | 351 | 5.00e-50 | 175 |
| MS.gene05011.t1 | MTR_5g011470 | 33.067 | 375 | 181 | 11 | 164 | 496 | 5 | 351 | 5.38e-50 | 175 |
| MS.gene05011.t1 | MTR_5g006990 | 34.239 | 368 | 168 | 10 | 164 | 496 | 5 | 333 | 1.04e-49 | 174 |
| MS.gene05011.t1 | MTR_5g008620 | 36.111 | 324 | 143 | 9 | 164 | 462 | 5 | 289 | 3.10e-48 | 169 |
| MS.gene05011.t1 | MTR_5g092540 | 39.777 | 269 | 123 | 7 | 250 | 496 | 8 | 259 | 3.50e-48 | 167 |
| MS.gene05011.t1 | MTR_5g091490 | 34.000 | 350 | 165 | 10 | 171 | 496 | 15 | 322 | 2.09e-46 | 165 |
| MS.gene05011.t1 | MTR_8g442440 | 65.079 | 63 | 22 | 0 | 244 | 306 | 7 | 69 | 2.21e-21 | 89.0 |
| MS.gene05011.t1 | MTR_4g069000 | 32.778 | 180 | 79 | 4 | 312 | 463 | 31 | 196 | 1.15e-19 | 87.8 |
| MS.gene05011.t1 | MTR_0001s0160 | 73.684 | 38 | 10 | 0 | 257 | 294 | 40 | 77 | 1.37e-13 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05011.t1 | AT2G03820 | 64.752 | 505 | 158 | 6 | 10 | 503 | 6 | 501 | 0.0 | 689 |
Find 111 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTAAAGCTGCTGCAATTT+TGG | 0.076449 | 3.4:+66494854 | MS.gene05011:CDS |
| TACCTTGAAGTTTGGTTTCT+TGG | 0.178636 | 3.4:+66494941 | MS.gene05011:CDS |
| TAGTAAATGCTGAGTTTATT+TGG | 0.211516 | 3.4:+66494361 | MS.gene05011:CDS |
| GTGGCCCGTGTGTCTGATTT+TGG | 0.235353 | 3.4:+66495104 | MS.gene05011:CDS |
| CCATGGGATGAGCTGCTAAC+TGG | 0.251884 | 3.4:+66495512 | MS.gene05011:CDS |
| CCCAAAATTGCAGCAGCTTT+AGG | 0.260285 | 3.4:-66494855 | None:intergenic |
| TTATCACTGCGGCTCTTAAC+AGG | 0.266910 | 3.4:-66494729 | None:intergenic |
| GATATGTTGAACCGCAATTC+AGG | 0.276469 | 3.4:-66495416 | None:intergenic |
| TTCTTTATCAAAACCACTTC+AGG | 0.282795 | 3.4:-66495260 | None:intergenic |
| ATGGTTTATAGTCTTTATTT+TGG | 0.301402 | 3.4:-66495445 | None:intergenic |
| AACCTTGACTTTAACCCTCT+TGG | 0.339925 | 3.4:-66494397 | None:intergenic |
| AATTAAATCCTCACGACAAA+TGG | 0.343202 | 3.4:-66494823 | None:intergenic |
| CACCGTGATAAACTTCCTTC+TGG | 0.344477 | 3.4:-66494425 | None:intergenic |
| CCCTGTTGAGTATGTTCAAC+AGG | 0.344627 | 3.4:+66494467 | MS.gene05011:CDS |
| ACAAAACACTGCCAATTGTT+TGG | 0.344709 | 3.4:-66494098 | None:intergenic |
| GCAGCTCCTTTGATTCTAAC+TGG | 0.347422 | 3.4:-66494284 | None:intergenic |
| ATTTGGAGCAGCTAATTCTA+AGG | 0.357779 | 3.4:+66494592 | MS.gene05011:CDS |
| GATCCACTTACCTTGAAGTT+TGG | 0.358412 | 3.4:+66494933 | MS.gene05011:CDS |
| ACACACATATTGGCTGCATT+TGG | 0.372787 | 3.4:-66494147 | None:intergenic |
| CAAACACTTCACACACATAT+TGG | 0.375834 | 3.4:-66494157 | None:intergenic |
| ATCAAGTTTGTTGAATTTGT+AGG | 0.382573 | 3.4:+66494696 | MS.gene05011:CDS |
| TCCTGTTGAACATACTCAAC+AGG | 0.387045 | 3.4:-66494468 | None:intergenic |
| GCTAGTAAGTAAAGACTTGA+AGG | 0.390432 | 3.4:-66494988 | None:intergenic |
| ATTAAATCCTCACGACAAAT+GGG | 0.404273 | 3.4:-66494822 | None:intergenic |
| GAAGAATATGAATATCAATA+AGG | 0.410544 | 3.4:+66494332 | MS.gene05011:CDS |
| ACTTGCAGCCACCGAGAACT+TGG | 0.411072 | 3.4:+66494253 | MS.gene05011:CDS |
| TCTTGGATGCTGAGCAGTAT+TGG | 0.423394 | 3.4:+66494958 | MS.gene05011:CDS |
| ACAGCAGCAATCCACTGATC+AGG | 0.432686 | 3.4:-66494528 | None:intergenic |
| CAACAGTAATGACATGGAAT+TGG | 0.439795 | 3.4:+66495217 | MS.gene05011:CDS |
| TCAAGTTTGTTGAATTTGTA+GGG | 0.441152 | 3.4:+66494697 | MS.gene05011:CDS |
| TTCATGGTTCACCAAACAAT+TGG | 0.446829 | 3.4:+66494087 | MS.gene05011:CDS |
| ATCCAAGAAACCAAACTTCA+AGG | 0.453254 | 3.4:-66494943 | None:intergenic |
| AAGCCTGGTGACAATGCTCT+TGG | 0.459127 | 3.4:+66495176 | MS.gene05011:CDS |
| TGTCACCAGGCTTTAAAAGA+TGG | 0.462708 | 3.4:-66495166 | None:intergenic |
| AGAAGGTTTACTTAAGCGTC+TGG | 0.462821 | 3.4:+66494200 | MS.gene05011:CDS |
| CATGGGATGAGCTGCTAACT+GGG | 0.463049 | 3.4:+66495513 | MS.gene05011:CDS |
| TGGAGTTTGACCCAAGTTCT+CGG | 0.467638 | 3.4:-66494264 | None:intergenic |
| ACAAGAAGCCGGTATGTTCA+TGG | 0.472887 | 3.4:+66494071 | MS.gene05011:CDS |
| TCAGGCAACATGTCTCTCAT+AGG | 0.480355 | 3.4:+66494556 | MS.gene05011:CDS |
| ACCTTTGTGCAAATCACAAT+AGG | 0.483547 | 3.4:-66494888 | None:intergenic |
| AAGAGGCACCTTCTGTTCCA+TGG | 0.487115 | 3.4:+66495495 | MS.gene05011:CDS |
| AAACCAAACTTCAAGGTAAG+TGG | 0.487609 | 3.4:-66494936 | None:intergenic |
| AATCTTATCATCAGCCTCCA+TGG | 0.489948 | 3.4:-66495330 | None:intergenic |
| ACATGTGTGAATCTTGCTCT+AGG | 0.495050 | 3.4:+66494493 | MS.gene05011:CDS |
| ATATGTTGAACCGCAATTCA+GGG | 0.495410 | 3.4:-66495415 | None:intergenic |
| GGATTGCTGCTGTGCAACTC+AGG | 0.500369 | 3.4:+66494538 | MS.gene05011:CDS |
| CAATTCCATGTCATTACTGT+TGG | 0.507714 | 3.4:-66495216 | None:intergenic |
| ACTTTAACCCTCTTGGAATG+TGG | 0.508963 | 3.4:-66494390 | None:intergenic |
| TTCCAAGAGGGTTAAAGTCA+AGG | 0.516159 | 3.4:+66494395 | MS.gene05011:CDS |
| CAAAGGAAATATTCCTGAAG+TGG | 0.521150 | 3.4:+66495247 | MS.gene05011:CDS |
| CAAACTCCAGTTAGAATCAA+AGG | 0.528303 | 3.4:+66494278 | MS.gene05011:CDS |
| ATCTTATCATCAGCCTCCAT+GGG | 0.529967 | 3.4:-66495329 | None:intergenic |
| ACTTACTAGCAGACAGTTGG+TGG | 0.535891 | 3.4:+66495001 | MS.gene05011:CDS |
| TTCGAGATGGCACAAGAAGC+CGG | 0.536000 | 3.4:+66494060 | MS.gene05011:CDS |
| TATCACTGCGGCTCTTAACA+GGG | 0.537830 | 3.4:-66494728 | None:intergenic |
| GTTTCATCTGAGGTTAATGT+CGG | 0.547286 | 3.4:+66495050 | MS.gene05011:CDS |
| TCCTATTGTGATTTGCACAA+AGG | 0.549668 | 3.4:+66494887 | MS.gene05011:CDS |
| TGCTATCAGAATCAAACAGA+TGG | 0.550633 | 3.4:+66494632 | MS.gene05011:CDS |
| GTCACAGATGCCACCTCTGA+TGG | 0.553868 | 3.4:-66495464 | None:intergenic |
| TTTACTTACTAGCAGACAGT+TGG | 0.553886 | 3.4:+66494998 | MS.gene05011:CDS |
| GGAGTATATAGTGTTGGATG+TGG | 0.554292 | 3.4:+66495022 | MS.gene05011:CDS |
| AGCTCATCCCATGGAACAGA+AGG | 0.555245 | 3.4:-66495503 | None:intergenic |
| GTTGGTGGAGTATATAGTGT+TGG | 0.555889 | 3.4:+66495016 | MS.gene05011:CDS |
| AGTCAAGGTTAGTGTCCAGA+AGG | 0.557071 | 3.4:+66494410 | MS.gene05011:CDS |
| TGGATGCTGAGCAGTATTGG+AGG | 0.562084 | 3.4:+66494961 | MS.gene05011:CDS |
| TATTTCTCTAATCGAAGTCA+TGG | 0.564179 | 3.4:+66494672 | MS.gene05011:CDS |
| AAAATTGCAGCAGCTTTAGG+AGG | 0.569697 | 3.4:-66494852 | None:intergenic |
| TCATCTGAGGTTAATGTCGG+TGG | 0.574369 | 3.4:+66495053 | MS.gene05011:CDS |
| CTTGCAGCCACCGAGAACTT+GGG | 0.577871 | 3.4:+66494254 | MS.gene05011:CDS |
| TCTTGACCTGAGTGAGGGTG+AGG | 0.578174 | 3.4:+66495544 | MS.gene05011:CDS |
| TGAAGATCTTGACCTGAGTG+AGG | 0.582777 | 3.4:+66495538 | MS.gene05011:CDS |
| GTAATGACATGGAATTGGAC+AGG | 0.584948 | 3.4:+66495222 | MS.gene05011:CDS |
| AGAGGCACCTTCTGTTCCAT+GGG | 0.589082 | 3.4:+66495496 | MS.gene05011:CDS |
| TAACCAAGAGCATTGTCACC+AGG | 0.592121 | 3.4:-66495179 | None:intergenic |
| TCAGAAGTTGATATCACAGA+AGG | 0.594668 | 3.4:+66494183 | MS.gene05011:CDS |
| CAGCAGCAATCCACTGATCA+GGG | 0.600518 | 3.4:-66494527 | None:intergenic |
| TGCAAGTAACTTTCACACTC+AGG | 0.606381 | 3.4:-66494237 | None:intergenic |
| TAAGCTTAGACGAATTCCCA+TGG | 0.606545 | 3.4:+66495313 | MS.gene05011:CDS |
| TTGGTGAACCATGAACATAC+CGG | 0.608208 | 3.4:-66494079 | None:intergenic |
| TGTGGAAGTTGTTTCATCTG+AGG | 0.609866 | 3.4:+66495040 | MS.gene05011:CDS |
| CGTCACCCTCACCCTCACTC+AGG | 0.610173 | 3.4:-66495550 | None:intergenic |
| CATGCCAGGTGTATTCGAGA+TGG | 0.613849 | 3.4:+66494047 | None:intergenic |
| GACAGAGCCACATTCCAAGA+GGG | 0.613937 | 3.4:+66494383 | MS.gene05011:CDS |
| CATGTGTGAATCTTGCTCTA+GGG | 0.616216 | 3.4:+66494494 | MS.gene05011:CDS |
| ATGGAATTGGACAGGTACAA+AGG | 0.618324 | 3.4:+66495230 | MS.gene05011:CDS |
| TAAAGACTATAAACCATCAG+AGG | 0.619453 | 3.4:+66495451 | MS.gene05011:CDS |
| ATCTGTGACTGATGGTGAAG+AGG | 0.622293 | 3.4:+66495478 | MS.gene05011:CDS |
| TGTGCCATCTCGAATACACC+TGG | 0.626683 | 3.4:-66494051 | None:intergenic |
| TTGCAGCTAACCCTGATCAG+TGG | 0.627759 | 3.4:+66494517 | MS.gene05011:CDS |
| AATCAGCCCCATTTGTCGTG+AGG | 0.628298 | 3.4:+66494815 | MS.gene05011:CDS |
| AGAATCAAACAGATGGATCA+CGG | 0.628536 | 3.4:+66494639 | MS.gene05011:CDS |
| TGACGATGGCGACAATAACA+TGG | 0.629002 | 3.4:+66495568 | MS.gene05011:CDS |
| GAGCAGCTAATTCTAAGGCA+TGG | 0.629905 | 3.4:+66494597 | MS.gene05011:CDS |
| TCTTTCCAAAATCAGACACA+CGG | 0.630186 | 3.4:-66495109 | None:intergenic |
| CCTGTTGAACATACTCAACA+GGG | 0.631414 | 3.4:-66494467 | None:intergenic |
| GTCCAGAAGGAAGTTTATCA+CGG | 0.638671 | 3.4:+66494423 | MS.gene05011:CDS |
| CCAGTTAGCAGCTCATCCCA+TGG | 0.638758 | 3.4:-66495512 | None:intergenic |
| AGACTATAAACCATCAGAGG+TGG | 0.640889 | 3.4:+66495454 | MS.gene05011:CDS |
| GAAGATCTTGACCTGAGTGA+GGG | 0.645915 | 3.4:+66495539 | MS.gene05011:CDS |
| CTTGACCTGAGTGAGGGTGA+GGG | 0.653187 | 3.4:+66495545 | MS.gene05011:CDS |
| TTAAATCCTCACGACAAATG+GGG | 0.655192 | 3.4:-66494821 | None:intergenic |
| GAGGTGGCATCTGTGACTGA+TGG | 0.659070 | 3.4:+66495470 | MS.gene05011:CDS |
| TGCTGCCAACAGTAATGACA+TGG | 0.662782 | 3.4:+66495211 | MS.gene05011:CDS |
| GGACAGAGCCACATTCCAAG+AGG | 0.662883 | 3.4:+66494382 | MS.gene05011:CDS |
| AGTGAGGGTGAGGGTGACGA+TGG | 0.666340 | 3.4:+66495554 | MS.gene05011:CDS |
| CTTTCCAAAATCAGACACAC+GGG | 0.666389 | 3.4:-66495108 | None:intergenic |
| TAGAAGAAAACCCTGAATTG+CGG | 0.680446 | 3.4:+66495405 | MS.gene05011:CDS |
| ATCACTGCGGCTCTTAACAG+GGG | 0.691399 | 3.4:-66494727 | None:intergenic |
| AGTTTGACCCAAGTTCTCGG+TGG | 0.706073 | 3.4:-66494261 | None:intergenic |
| GCTTAGACGAATTCCCATGG+AGG | 0.746816 | 3.4:+66495316 | MS.gene05011:CDS |
| AAACAAGTTGCTTATCACTG+CGG | 0.764201 | 3.4:-66494740 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAGAATATGAATATCAATA+AGG | + | chr3.4:66494332-66494351 | MS.gene05011:CDS | 20.0% |
| !!! | ATGGTTTATAGTCTTTATTT+TGG | - | chr3.4:66495448-66495467 | None:intergenic | 20.0% |
| ! | TAGTAAATGCTGAGTTTATT+TGG | + | chr3.4:66494361-66494380 | MS.gene05011:CDS | 25.0% |
| !! | TTATAAGTACACATTTTCTG+TGG | + | chr3.4:66494791-66494810 | MS.gene05011:CDS | 25.0% |
| !! | TTTTCTATCAGAACTCATTT+GGG | + | chr3.4:66495143-66495162 | MS.gene05011:CDS | 25.0% |
| !!! | ATCAAGTTTGTTGAATTTGT+AGG | + | chr3.4:66494696-66494715 | MS.gene05011:CDS | 25.0% |
| !!! | TCAAGTTTGTTGAATTTGTA+GGG | + | chr3.4:66494697-66494716 | MS.gene05011:CDS | 25.0% |
| AATTAAATCCTCACGACAAA+TGG | - | chr3.4:66494826-66494845 | None:intergenic | 30.0% | |
| ATTAAATCCTCACGACAAAT+GGG | - | chr3.4:66494825-66494844 | None:intergenic | 30.0% | |
| TAAAGACTATAAACCATCAG+AGG | + | chr3.4:66495451-66495470 | MS.gene05011:CDS | 30.0% | |
| TATTTCTCTAATCGAAGTCA+TGG | + | chr3.4:66494672-66494691 | MS.gene05011:CDS | 30.0% | |
| TTCTTTATCAAAACCACTTC+AGG | - | chr3.4:66495263-66495282 | None:intergenic | 30.0% | |
| ! | GTTTTCTATCAGAACTCATT+TGG | + | chr3.4:66495142-66495161 | MS.gene05011:CDS | 30.0% |
| !! | TAGGCGTACTTTTTACTATT+TGG | + | chr3.4:66494575-66494594 | MS.gene05011:CDS | 30.0% |
| AAACAAGTTGCTTATCACTG+CGG | - | chr3.4:66494743-66494762 | None:intergenic | 35.0% | |
| AAACCAAACTTCAAGGTAAG+TGG | - | chr3.4:66494939-66494958 | None:intergenic | 35.0% | |
| ACAAAACACTGCCAATTGTT+TGG | - | chr3.4:66494101-66494120 | None:intergenic | 35.0% | |
| ACCTTTGTGCAAATCACAAT+AGG | - | chr3.4:66494891-66494910 | None:intergenic | 35.0% | |
| AGAATCAAACAGATGGATCA+CGG | + | chr3.4:66494639-66494658 | MS.gene05011:CDS | 35.0% | |
| ATATGTTGAACCGCAATTCA+GGG | - | chr3.4:66495418-66495437 | None:intergenic | 35.0% | |
| ATCCAAGAAACCAAACTTCA+AGG | - | chr3.4:66494946-66494965 | None:intergenic | 35.0% | |
| CAAACACTTCACACACATAT+TGG | - | chr3.4:66494160-66494179 | None:intergenic | 35.0% | |
| CAAACTCCAGTTAGAATCAA+AGG | + | chr3.4:66494278-66494297 | MS.gene05011:CDS | 35.0% | |
| CAAAGGAAATATTCCTGAAG+TGG | + | chr3.4:66495247-66495266 | MS.gene05011:CDS | 35.0% | |
| CAACAGTAATGACATGGAAT+TGG | + | chr3.4:66495217-66495236 | MS.gene05011:CDS | 35.0% | |
| CAATTCCATGTCATTACTGT+TGG | - | chr3.4:66495219-66495238 | None:intergenic | 35.0% | |
| GCTAGTAAGTAAAGACTTGA+AGG | - | chr3.4:66494991-66495010 | None:intergenic | 35.0% | |
| TAGAAGAAAACCCTGAATTG+CGG | + | chr3.4:66495405-66495424 | MS.gene05011:CDS | 35.0% | |
| TCTTTCCAAAATCAGACACA+CGG | - | chr3.4:66495112-66495131 | None:intergenic | 35.0% | |
| TGCTATCAGAATCAAACAGA+TGG | + | chr3.4:66494632-66494651 | MS.gene05011:CDS | 35.0% | |
| TTAAATCCTCACGACAAATG+GGG | - | chr3.4:66494824-66494843 | None:intergenic | 35.0% | |
| TTCATGGTTCACCAAACAAT+TGG | + | chr3.4:66494087-66494106 | MS.gene05011:CDS | 35.0% | |
| TTTACTTACTAGCAGACAGT+TGG | + | chr3.4:66494998-66495017 | MS.gene05011:CDS | 35.0% | |
| ! | AGTGTTTTGTGTTGCAAATG+TGG | + | chr3.4:66494111-66494130 | MS.gene05011:CDS | 35.0% |
| ! | ATTTGGAGCAGCTAATTCTA+AGG | + | chr3.4:66494592-66494611 | MS.gene05011:CDS | 35.0% |
| ! | GTGTTTTGTGTTGCAAATGT+GGG | + | chr3.4:66494112-66494131 | MS.gene05011:CDS | 35.0% |
| ! | GTTTCATCTGAGGTTAATGT+CGG | + | chr3.4:66495050-66495069 | MS.gene05011:CDS | 35.0% |
| ! | TACCTTGAAGTTTGGTTTCT+TGG | + | chr3.4:66494941-66494960 | MS.gene05011:CDS | 35.0% |
| ! | TCCTATTGTGATTTGCACAA+AGG | + | chr3.4:66494887-66494906 | MS.gene05011:CDS | 35.0% |
| !! | GCTGCAATTTTGGGAAATAT+CGG | + | chr3.4:66494864-66494883 | MS.gene05011:CDS | 35.0% |
| !! | TCAGAAGTTGATATCACAGA+AGG | + | chr3.4:66494183-66494202 | MS.gene05011:CDS | 35.0% |
| AACCTTGACTTTAACCCTCT+TGG | - | chr3.4:66494400-66494419 | None:intergenic | 40.0% | |
| AATCTTATCATCAGCCTCCA+TGG | - | chr3.4:66495333-66495352 | None:intergenic | 40.0% | |
| ACATGTGTGAATCTTGCTCT+AGG | + | chr3.4:66494493-66494512 | MS.gene05011:CDS | 40.0% | |
| ACTTTAACCCTCTTGGAATG+TGG | - | chr3.4:66494393-66494412 | None:intergenic | 40.0% | |
| AGAAGGTTTACTTAAGCGTC+TGG | + | chr3.4:66494200-66494219 | MS.gene05011:CDS | 40.0% | |
| AGACTATAAACCATCAGAGG+TGG | + | chr3.4:66495454-66495473 | MS.gene05011:CDS | 40.0% | |
| ATCTTATCATCAGCCTCCAT+GGG | - | chr3.4:66495332-66495351 | None:intergenic | 40.0% | |
| ATGGAATTGGACAGGTACAA+AGG | + | chr3.4:66495230-66495249 | MS.gene05011:CDS | 40.0% | |
| CATGTGTGAATCTTGCTCTA+GGG | + | chr3.4:66494494-66494513 | MS.gene05011:CDS | 40.0% | |
| CCTGTTGAACATACTCAACA+GGG | - | chr3.4:66494470-66494489 | None:intergenic | 40.0% | |
| CTTTCCAAAATCAGACACAC+GGG | - | chr3.4:66495111-66495130 | None:intergenic | 40.0% | |
| GATATGTTGAACCGCAATTC+AGG | - | chr3.4:66495419-66495438 | None:intergenic | 40.0% | |
| GATCCACTTACCTTGAAGTT+TGG | + | chr3.4:66494933-66494952 | MS.gene05011:CDS | 40.0% | |
| GTAATGACATGGAATTGGAC+AGG | + | chr3.4:66495222-66495241 | MS.gene05011:CDS | 40.0% | |
| GTCCAGAAGGAAGTTTATCA+CGG | + | chr3.4:66494423-66494442 | MS.gene05011:CDS | 40.0% | |
| TAAGCTTAGACGAATTCCCA+TGG | + | chr3.4:66495313-66495332 | MS.gene05011:CDS | 40.0% | |
| TCCTGTTGAACATACTCAAC+AGG | - | chr3.4:66494471-66494490 | None:intergenic | 40.0% | |
| TGCAAGTAACTTTCACACTC+AGG | - | chr3.4:66494240-66494259 | None:intergenic | 40.0% | |
| TTCCAAGAGGGTTAAAGTCA+AGG | + | chr3.4:66494395-66494414 | MS.gene05011:CDS | 40.0% | |
| TTGGTGAACCATGAACATAC+CGG | - | chr3.4:66494082-66494101 | None:intergenic | 40.0% | |
| ! | ACACACATATTGGCTGCATT+TGG | - | chr3.4:66494150-66494169 | None:intergenic | 40.0% |
| ! | CCTAAAGCTGCTGCAATTTT+GGG | + | chr3.4:66494855-66494874 | MS.gene05011:CDS | 40.0% |
| ! | GGAGTATATAGTGTTGGATG+TGG | + | chr3.4:66495022-66495041 | MS.gene05011:CDS | 40.0% |
| ! | GTTGGTGGAGTATATAGTGT+TGG | + | chr3.4:66495016-66495035 | MS.gene05011:CDS | 40.0% |
| ! | TCCTAAAGCTGCTGCAATTT+TGG | + | chr3.4:66494854-66494873 | MS.gene05011:CDS | 40.0% |
| ! | TGTGGAAGTTGTTTCATCTG+AGG | + | chr3.4:66495040-66495059 | MS.gene05011:CDS | 40.0% |
| !! | AAAATTGCAGCAGCTTTAGG+AGG | - | chr3.4:66494855-66494874 | None:intergenic | 40.0% |
| !! | TGTCACCAGGCTTTAAAAGA+TGG | - | chr3.4:66495169-66495188 | None:intergenic | 40.0% |
| !!! | TGTTTTAGCTGATGCTCAAG+TGG | + | chr3.4:66495085-66495104 | MS.gene05011:CDS | 40.0% |
| ACAAGAAGCCGGTATGTTCA+TGG | + | chr3.4:66494071-66494090 | MS.gene05011:CDS | 45.0% | |
| ACTTACTAGCAGACAGTTGG+TGG | + | chr3.4:66495001-66495020 | MS.gene05011:CDS | 45.0% | |
| AGTCAAGGTTAGTGTCCAGA+AGG | + | chr3.4:66494410-66494429 | MS.gene05011:CDS | 45.0% | |
| CACCGTGATAAACTTCCTTC+TGG | - | chr3.4:66494428-66494447 | None:intergenic | 45.0% | |
| CCCAAAATTGCAGCAGCTTT+AGG | - | chr3.4:66494858-66494877 | None:intergenic | 45.0% | |
| CCCTGTTGAGTATGTTCAAC+AGG | + | chr3.4:66494467-66494486 | MS.gene05011:CDS | 45.0% | |
| GAAGATCTTGACCTGAGTGA+GGG | + | chr3.4:66495539-66495558 | MS.gene05011:CDS | 45.0% | |
| GCAGCTCCTTTGATTCTAAC+TGG | - | chr3.4:66494287-66494306 | None:intergenic | 45.0% | |
| TATCACTGCGGCTCTTAACA+GGG | - | chr3.4:66494731-66494750 | None:intergenic | 45.0% | |
| TCAGGCAACATGTCTCTCAT+AGG | + | chr3.4:66494556-66494575 | MS.gene05011:CDS | 45.0% | |
| TCTTGGATGCTGAGCAGTAT+TGG | + | chr3.4:66494958-66494977 | MS.gene05011:CDS | 45.0% | |
| TGAAGATCTTGACCTGAGTG+AGG | + | chr3.4:66495538-66495557 | MS.gene05011:CDS | 45.0% | |
| TGACGATGGCGACAATAACA+TGG | + | chr3.4:66495568-66495587 | MS.gene05011:CDS | 45.0% | |
| TGCTGCCAACAGTAATGACA+TGG | + | chr3.4:66495211-66495230 | MS.gene05011:CDS | 45.0% | |
| TGGAGTTTGACCCAAGTTCT+CGG | - | chr3.4:66494267-66494286 | None:intergenic | 45.0% | |
| TTATCACTGCGGCTCTTAAC+AGG | - | chr3.4:66494732-66494751 | None:intergenic | 45.0% | |
| ! | ATCTGTGACTGATGGTGAAG+AGG | + | chr3.4:66495478-66495497 | MS.gene05011:CDS | 45.0% |
| ! | TCATCTGAGGTTAATGTCGG+TGG | + | chr3.4:66495053-66495072 | MS.gene05011:CDS | 45.0% |
| !! | GAGCAGCTAATTCTAAGGCA+TGG | + | chr3.4:66494597-66494616 | MS.gene05011:CDS | 45.0% |
| !! | TAACCAAGAGCATTGTCACC+AGG | - | chr3.4:66495182-66495201 | None:intergenic | 45.0% |
| !!! | TTGGGCCATCTTTTAAAGCC+TGG | + | chr3.4:66495161-66495180 | MS.gene05011:CDS | 45.0% |
| AAGCCTGGTGACAATGCTCT+TGG | + | chr3.4:66495176-66495195 | MS.gene05011:CDS | 50.0% | |
| AATCAGCCCCATTTGTCGTG+AGG | + | chr3.4:66494815-66494834 | MS.gene05011:CDS | 50.0% | |
| ACAGCAGCAATCCACTGATC+AGG | - | chr3.4:66494531-66494550 | None:intergenic | 50.0% | |
| AGCTCATCCCATGGAACAGA+AGG | - | chr3.4:66495506-66495525 | None:intergenic | 50.0% | |
| AGTTTGACCCAAGTTCTCGG+TGG | - | chr3.4:66494264-66494283 | None:intergenic | 50.0% | |
| ATCACTGCGGCTCTTAACAG+GGG | - | chr3.4:66494730-66494749 | None:intergenic | 50.0% | |
| CAGCAGCAATCCACTGATCA+GGG | - | chr3.4:66494530-66494549 | None:intergenic | 50.0% | |
| CATGGGATGAGCTGCTAACT+GGG | + | chr3.4:66495513-66495532 | MS.gene05011:CDS | 50.0% | |
| GACAGAGCCACATTCCAAGA+GGG | + | chr3.4:66494383-66494402 | MS.gene05011:CDS | 50.0% | |
| GCTTAGACGAATTCCCATGG+AGG | + | chr3.4:66495316-66495335 | MS.gene05011:CDS | 50.0% | |
| TGTGCCATCTCGAATACACC+TGG | - | chr3.4:66494054-66494073 | None:intergenic | 50.0% | |
| TTCGAGATGGCACAAGAAGC+CGG | + | chr3.4:66494060-66494079 | MS.gene05011:CDS | 50.0% | |
| TTGCAGCTAACCCTGATCAG+TGG | + | chr3.4:66494517-66494536 | MS.gene05011:CDS | 50.0% | |
| ! | TGGATGCTGAGCAGTATTGG+AGG | + | chr3.4:66494961-66494980 | MS.gene05011:CDS | 50.0% |
| !! | AAGAGGCACCTTCTGTTCCA+TGG | + | chr3.4:66495495-66495514 | MS.gene05011:CDS | 50.0% |
| !! | AGAGGCACCTTCTGTTCCAT+GGG | + | chr3.4:66495496-66495515 | MS.gene05011:CDS | 50.0% |
| ACTTGCAGCCACCGAGAACT+TGG | + | chr3.4:66494253-66494272 | MS.gene05011:CDS | 55.0% | |
| CCAGTTAGCAGCTCATCCCA+TGG | - | chr3.4:66495515-66495534 | None:intergenic | 55.0% | |
| CCATGGGATGAGCTGCTAAC+TGG | + | chr3.4:66495512-66495531 | MS.gene05011:CDS | 55.0% | |
| CTTGACCTGAGTGAGGGTGA+GGG | + | chr3.4:66495545-66495564 | MS.gene05011:CDS | 55.0% | |
| CTTGCAGCCACCGAGAACTT+GGG | + | chr3.4:66494254-66494273 | MS.gene05011:CDS | 55.0% | |
| GAGGTGGCATCTGTGACTGA+TGG | + | chr3.4:66495470-66495489 | MS.gene05011:CDS | 55.0% | |
| GGACAGAGCCACATTCCAAG+AGG | + | chr3.4:66494382-66494401 | MS.gene05011:CDS | 55.0% | |
| GGATTGCTGCTGTGCAACTC+AGG | + | chr3.4:66494538-66494557 | MS.gene05011:CDS | 55.0% | |
| GTCACAGATGCCACCTCTGA+TGG | - | chr3.4:66495467-66495486 | None:intergenic | 55.0% | |
| TCTTGACCTGAGTGAGGGTG+AGG | + | chr3.4:66495544-66495563 | MS.gene05011:CDS | 55.0% | |
| ! | GTGGCCCGTGTGTCTGATTT+TGG | + | chr3.4:66495104-66495123 | MS.gene05011:CDS | 55.0% |
| AGTGAGGGTGAGGGTGACGA+TGG | + | chr3.4:66495554-66495573 | MS.gene05011:CDS | 60.0% | |
| CGTCACCCTCACCCTCACTC+AGG | - | chr3.4:66495553-66495572 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 66494048 | 66495598 | 66494048 | ID=MS.gene05011 |
| chr3.4 | mRNA | 66494048 | 66495598 | 66494048 | ID=MS.gene05011.t1;Parent=MS.gene05011 |
| chr3.4 | exon | 66494048 | 66495598 | 66494048 | ID=MS.gene05011.t1.exon1;Parent=MS.gene05011.t1 |
| chr3.4 | CDS | 66494048 | 66495598 | 66494048 | ID=cds.MS.gene05011.t1;Parent=MS.gene05011.t1 |
| Gene Sequence |
| Protein sequence |
