AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene052434


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052434.t1 MTR_6g486270 97.600 375 4 3 1 375 1 370 0.0 729
MS.gene052434.t1 MTR_2g102227 51.754 228 98 5 132 354 273 493 8.34e-58 196
MS.gene052434.t1 MTR_8g022290 28.358 268 144 6 133 353 68 334 4.54e-21 94.0
MS.gene052434.t1 MTR_4g079960 37.190 121 58 4 119 222 5 124 8.48e-17 80.5
MS.gene052434.t1 MTR_4g079960 37.190 121 58 4 119 222 5 124 1.18e-16 80.1
MS.gene052434.t1 MTR_4g079960 37.190 121 58 4 119 222 5 124 1.53e-16 80.1
MS.gene052434.t1 MTR_1g061600 38.235 102 60 2 131 231 131 230 6.32e-16 79.3
MS.gene052434.t1 MTR_2g016140 35.106 94 56 2 133 222 23 115 3.42e-15 75.9
MS.gene052434.t1 MTR_2g016140 35.106 94 56 2 133 222 23 115 5.74e-15 75.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052434.t1 AT3G24490 56.957 230 91 2 132 361 89 310 8.67e-83 256
MS.gene052434.t1 AT3G58630 27.055 292 156 7 115 353 7 294 4.18e-27 109
MS.gene052434.t1 AT3G58630 27.055 292 156 7 115 353 7 294 4.99e-27 109
MS.gene052434.t1 AT3G10030 33.149 181 109 4 47 225 82 252 1.65e-18 87.4
MS.gene052434.t1 AT3G10030 33.149 181 109 4 47 225 82 252 3.24e-18 86.7
MS.gene052434.t1 AT5G05550 32.468 231 122 7 133 351 24 232 9.12e-18 82.4
MS.gene052434.t1 AT5G05550 32.468 231 122 7 133 351 24 232 1.27e-17 82.0
MS.gene052434.t1 AT3G14180 37.405 131 65 4 104 227 58 178 1.65e-17 84.0
MS.gene052434.t1 AT5G05550 32.468 231 122 7 133 351 24 232 1.75e-17 81.6
MS.gene052434.t1 AT1G54060 28.846 260 140 8 133 351 94 349 1.10e-16 81.3
MS.gene052434.t1 AT3G11100 33.333 231 125 7 133 351 22 235 1.46e-16 79.0
MS.gene052434.t1 AT3G24860 35.870 92 53 1 133 224 65 150 6.45e-13 69.3

Find 85 sgRNAs with CRISPR-Local

Find 111 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGCTTGTGGTGTTGATTC+AGG 0.155144 6.1:+75071931 MS.gene052434:CDS
GTTGCAGAAGAAGCAGATTT+TGG 0.210644 6.1:+75072242 MS.gene052434:CDS
GGAGGCTTCGTATAGGATTT+TGG 0.224205 6.1:+75072110 MS.gene052434:CDS
GGTGAGAAGTTTCTTCAAAT+TGG 0.239028 6.1:+75071673 MS.gene052434:CDS
CGTTTGTGTTGTTAGAGATA+TGG 0.280545 6.1:+75071650 MS.gene052434:CDS
TGGGTTTAAGTTCTTGTAAA+TGG 0.286067 6.1:+75071851 MS.gene052434:CDS
AGTGGCCCTAGTGGCGGTTT+TGG 0.306452 6.1:+75071493 MS.gene052434:CDS
TCGAGTTCTGTCCATTCCTC+TGG 0.317779 6.1:+75071601 MS.gene052434:CDS
TGATATTGTAAGTTACGAAT+TGG 0.332259 6.1:-75071322 None:intergenic
TAGAATGGATGAAATGGGTT+TGG 0.334179 6.1:+75071831 MS.gene052434:CDS
GAAGAGTAGAATGGATGAAA+TGG 0.336184 6.1:+75071825 MS.gene052434:CDS
GTTATAATCATCGAATTCTT+CGG 0.353879 6.1:-75071386 None:intergenic
AGAATGGATGAAATGGGTTT+GGG 0.358595 6.1:+75071832 MS.gene052434:CDS
TTATAATCATCGAATTCTTC+GGG 0.363359 6.1:-75071385 None:intergenic
GTGAGAAGTTTCTTCAAATT+GGG 0.369920 6.1:+75071674 MS.gene052434:CDS
AACGTAGATGAAGACGGAAT+TGG 0.404212 6.1:+75071406 MS.gene052434:CDS
GATGAAGACGGAATTGGAAA+TGG 0.406005 6.1:+75071412 MS.gene052434:CDS
GTTTGTGTTGTTAGAGATAT+GGG 0.412812 6.1:+75071651 MS.gene052434:CDS
GATATTGTAAGTTACGAATT+GGG 0.429997 6.1:-75071321 None:intergenic
ATACCAGGGTTTATTTGAAT+AGG 0.432946 6.1:+75071971 MS.gene052434:CDS
TTGCTTGTGGTGTTGATTCA+GGG 0.434188 6.1:+75071932 MS.gene052434:CDS
AAGAGTAGAATGGATGAAAT+GGG 0.435287 6.1:+75071826 MS.gene052434:CDS
CCACCACCAAAACCGCCACT+AGG 0.438484 6.1:-75071499 None:intergenic
TAAGAAAGAGAAGAGTAGAA+TGG 0.459638 6.1:+75071816 MS.gene052434:CDS
TTATGAATTGTTGCCGCCAT+GGG 0.464247 6.1:+75071540 MS.gene052434:CDS
CTGAGGAGTTGAAAGTTGAA+AGG 0.467561 6.1:+75071746 MS.gene052434:CDS
GATTCAAGATACCCATCAAA+AGG 0.470251 6.1:+75071256 MS.gene052434:CDS
GGAGTTGGAGAAGGTGAGGT+TGG 0.470646 6.1:+75072200 MS.gene052434:CDS
GGCTGAAATATCGAAAATAC+AGG 0.472979 6.1:+75072275 MS.gene052434:CDS
GGAATTGGAAATGGGTATGT+TGG 0.473631 6.1:+75071421 MS.gene052434:CDS
CGAGTTCTGTCCATTCCTCT+GGG 0.474330 6.1:+75071602 MS.gene052434:CDS
TACTAAGAGGCAACAGATGA+TGG 0.477066 6.1:+75072179 MS.gene052434:CDS
ATGAAGACGGAATTGGAAAT+GGG 0.477798 6.1:+75071413 MS.gene052434:CDS
TCGAGTGCGAGACAAGAGTA+TGG 0.478047 6.1:+75071907 MS.gene052434:CDS
ATTCCTCTGGGTCGGAGGAA+TGG 0.482329 6.1:+75071614 MS.gene052434:CDS
TTCTGTCCATTCCTCTGGGT+CGG 0.485623 6.1:+75071606 MS.gene052434:CDS
GTGTAGGAGTGTATTGGATA+AGG 0.493185 6.1:+75071780 MS.gene052434:CDS
AAGAGGAGGAGGCTTCGTAT+AGG 0.493270 6.1:+75072103 MS.gene052434:CDS
GTGTATTGGATAAGGTGAAG+AGG 0.499755 6.1:+75071788 MS.gene052434:CDS
ATTATGAATTGTTGCCGCCA+TGG 0.507987 6.1:+75071539 MS.gene052434:CDS
GGATGATGTCGATAGGGAAG+AGG 0.514505 6.1:+75072086 MS.gene052434:CDS
GAATGGATTTGATGAGATGA+GGG 0.516784 6.1:+75071996 MS.gene052434:CDS
GAGGCAACAGATGATGGAGT+TGG 0.516973 6.1:+75072185 MS.gene052434:CDS
TGATGTCGATAGGGAAGAGG+AGG 0.521958 6.1:+75072089 MS.gene052434:CDS
TGTCGATAGGGAAGAGGAGG+AGG 0.528458 6.1:+75072092 MS.gene052434:CDS
CTTCAATTCAATGGACGACA+TGG 0.528859 6.1:+75071228 None:intergenic
AGAAGATTGAGAATACTAAG+AGG 0.534145 6.1:+75072166 MS.gene052434:CDS
CGAATGGATTTGATGAGATG+AGG 0.535045 6.1:+75071995 MS.gene052434:CDS
CACCACCAAAACCGCCACTA+GGG 0.545654 6.1:-75071498 None:intergenic
CGATGAGGATGATGTCGATA+GGG 0.548936 6.1:+75072080 MS.gene052434:CDS
GGATGATGATGATGAGGATG+AGG 0.549901 6.1:+75072047 MS.gene052434:CDS
AGTATGTGTTTATGAATACC+AGG 0.551827 6.1:+75071956 MS.gene052434:CDS
TGCTTGTGGTGTTGATTCAG+GGG 0.553404 6.1:+75071933 MS.gene052434:CDS
ATTCCTCCGACCCAGAGGAA+TGG 0.555282 6.1:-75071612 None:intergenic
TTGTTGCCGCCATGGGGCAG+TGG 0.558563 6.1:+75071547 MS.gene052434:CDS
AGAAGTTTCTTCAAATTGGG+AGG 0.559816 6.1:+75071677 MS.gene052434:CDS
GTTTATTTGAATAGGTCGAA+TGG 0.561187 6.1:+75071979 MS.gene052434:CDS
GGCACAGTGTAGGAGTGTAT+TGG 0.561474 6.1:+75071774 MS.gene052434:CDS
ACAGATGATGGAGTTGGAGA+AGG 0.562220 6.1:+75072191 MS.gene052434:CDS
AAAGGAATGTGGCACAGTGT+AGG 0.572005 6.1:+75071764 MS.gene052434:CDS
ATTCAAGATACCCATCAAAA+GGG 0.572324 6.1:+75071257 MS.gene052434:CDS
GCGATGAGGATGATGTCGAT+AGG 0.584075 6.1:+75072079 MS.gene052434:CDS
TGTCCATTCCTCTGGGTCGG+AGG 0.586004 6.1:+75071609 MS.gene052434:CDS
GAGGAATAGTTTGAGATCAG+AGG 0.586253 6.1:+75071696 MS.gene052434:CDS
TTCTGAGGATGATGATGATG+AGG 0.586254 6.1:+75072041 MS.gene052434:CDS
TCAGAACTCTCAGACTCACC+AGG 0.597701 6.1:-75072024 None:intergenic
TGGTGAGTCTGAGAGTTCTG+AGG 0.600777 6.1:+75072026 MS.gene052434:CDS
TGATGGAGTTGGAGAAGGTG+AGG 0.617953 6.1:+75072196 MS.gene052434:CDS
ATAGTTTGAGATCAGAGGAA+TGG 0.618950 6.1:+75071701 MS.gene052434:CDS
ATGCGAAGTGGCCCTAGTGG+CGG 0.619751 6.1:+75071487 MS.gene052434:CDS
GAAAATTTACCACTGCCCCA+TGG 0.622030 6.1:-75071556 None:intergenic
AGTTGCTGAGAAAGTTTCTG+AGG 0.628405 6.1:+75071729 MS.gene052434:CDS
CGACCTATTCAAATAAACCC+TGG 0.636066 6.1:-75071974 None:intergenic
GATTATAACGTAGATGAAGA+CGG 0.641525 6.1:+75071400 MS.gene052434:CDS
TATGAATTGTTGCCGCCATG+GGG 0.651070 6.1:+75071541 MS.gene052434:CDS
GATGAGATGAGGGATAGTCC+TGG 0.652387 6.1:+75072006 MS.gene052434:CDS
CAAGAGTATGGACTTGCTTG+TGG 0.652939 6.1:+75071919 MS.gene052434:CDS
GTTGAAAGTTGAAAGGAATG+TGG 0.654797 6.1:+75071753 MS.gene052434:CDS
TTTGTGTTGTTAGAGATATG+GGG 0.660660 6.1:+75071652 MS.gene052434:CDS
GTATGTGTTTATGAATACCA+GGG 0.664776 6.1:+75071957 MS.gene052434:CDS
AAAATGCGAAGTGGCCCTAG+TGG 0.671315 6.1:+75071484 MS.gene052434:CDS
TGTCCATTCCTCCGACCCAG+AGG 0.680725 6.1:-75071617 None:intergenic
TGATGCTGATGGTGACGATG+AGG 0.699210 6.1:+75072308 MS.gene052434:CDS
GAAGCAGTAGATGATGCTGA+TGG 0.735151 6.1:+75072297 MS.gene052434:CDS
AATTTACCACTGCCCCATGG+CGG 0.737952 6.1:-75071553 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GAAATTTTGAAGAAAATGTT+GGG + chr6.1:75071443-75071462 MS.gene052434:CDS 20.0%
! ATATCCATCTTCTTGAAAAA+TGG - chr6.1:75071877-75071896 None:intergenic 25.0%
! GATATTGTAAGTTACGAATT+GGG - chr6.1:75071324-75071343 None:intergenic 25.0%
! GTTATAATCATCGAATTCTT+CGG - chr6.1:75071389-75071408 None:intergenic 25.0%
! TGATATTGTAAGTTACGAAT+TGG - chr6.1:75071325-75071344 None:intergenic 25.0%
! TTATAATCATCGAATTCTTC+GGG - chr6.1:75071388-75071407 None:intergenic 25.0%
!! AAATTTTCGAACTTTAATCG+TGG + chr6.1:75071571-75071590 MS.gene052434:CDS 25.0%
!! CTGATTCGATTCAAAAATTT+GGG + chr6.1:75072133-75072152 MS.gene052434:CDS 25.0%
!!! GGAAATTTTGAAGAAAATGT+TGG + chr6.1:75071442-75071461 MS.gene052434:CDS 25.0%
AAAAAGAGAAAAATGCGAAG+TGG + chr6.1:75071475-75071494 MS.gene052434:CDS 30.0%
AAGAGTAGAATGGATGAAAT+GGG + chr6.1:75071826-75071845 MS.gene052434:CDS 30.0%
AGAAGATTGAGAATACTAAG+AGG + chr6.1:75072166-75072185 MS.gene052434:CDS 30.0%
AGTATGTGTTTATGAATACC+AGG + chr6.1:75071956-75071975 MS.gene052434:CDS 30.0%
ATACCAGGGTTTATTTGAAT+AGG + chr6.1:75071971-75071990 MS.gene052434:CDS 30.0%
ATTCAAGATACCCATCAAAA+GGG + chr6.1:75071257-75071276 MS.gene052434:CDS 30.0%
GATTATAACGTAGATGAAGA+CGG + chr6.1:75071400-75071419 MS.gene052434:CDS 30.0%
GTATGTGTTTATGAATACCA+GGG + chr6.1:75071957-75071976 MS.gene052434:CDS 30.0%
GTGAGAAGTTTCTTCAAATT+GGG + chr6.1:75071674-75071693 MS.gene052434:CDS 30.0%
GTTTATTTGAATAGGTCGAA+TGG + chr6.1:75071979-75071998 MS.gene052434:CDS 30.0%
TAAGAAAGAGAAGAGTAGAA+TGG + chr6.1:75071816-75071835 MS.gene052434:CDS 30.0%
! GTTTGTGTTGTTAGAGATAT+GGG + chr6.1:75071651-75071670 MS.gene052434:CDS 30.0%
! TGGGTTTAAGTTCTTGTAAA+TGG + chr6.1:75071851-75071870 MS.gene052434:CDS 30.0%
! TTTGTGTTGTTAGAGATATG+GGG + chr6.1:75071652-75071671 MS.gene052434:CDS 30.0%
!! GCTGATTCGATTCAAAAATT+TGG + chr6.1:75072132-75072151 MS.gene052434:CDS 30.0%
!! GTTGGATTTTAATAGGGAAT+TGG + chr6.1:75072218-75072237 MS.gene052434:CDS 30.0%
AGAAGTTTCTTCAAATTGGG+AGG + chr6.1:75071677-75071696 MS.gene052434:CDS 35.0%
ATGAAGACGGAATTGGAAAT+GGG + chr6.1:75071413-75071432 MS.gene052434:CDS 35.0%
GAAGAGTAGAATGGATGAAA+TGG + chr6.1:75071825-75071844 MS.gene052434:CDS 35.0%
GATTCAAGATACCCATCAAA+AGG + chr6.1:75071256-75071275 MS.gene052434:CDS 35.0%
GGCTGAAATATCGAAAATAC+AGG + chr6.1:75072275-75072294 MS.gene052434:CDS 35.0%
GGTGAGAAGTTTCTTCAAAT+TGG + chr6.1:75071673-75071692 MS.gene052434:CDS 35.0%
GTTGAAAGTTGAAAGGAATG+TGG + chr6.1:75071753-75071772 MS.gene052434:CDS 35.0%
! AGAAGAAGCAGATTTTGGAT+AGG + chr6.1:75072247-75072266 MS.gene052434:CDS 35.0%
! AGAATGGATGAAATGGGTTT+GGG + chr6.1:75071832-75071851 MS.gene052434:CDS 35.0%
! ATAGTTTGAGATCAGAGGAA+TGG + chr6.1:75071701-75071720 MS.gene052434:CDS 35.0%
! CGTTTGTGTTGTTAGAGATA+TGG + chr6.1:75071650-75071669 MS.gene052434:CDS 35.0%
! GAAGAAGCAGATTTTGGATA+GGG + chr6.1:75072248-75072267 MS.gene052434:CDS 35.0%
! GAATGGATTTGATGAGATGA+GGG + chr6.1:75071996-75072015 MS.gene052434:CDS 35.0%
! TAGAATGGATGAAATGGGTT+TGG + chr6.1:75071831-75071850 MS.gene052434:CDS 35.0%
! TTTTCGAACTTTAATCGTGG+TGG + chr6.1:75071574-75071593 MS.gene052434:CDS 35.0%
!! AGGTGAGGTTGGATTTTAAT+AGG + chr6.1:75072211-75072230 MS.gene052434:CDS 35.0%
!! GGTGAGGTTGGATTTTAATA+GGG + chr6.1:75072212-75072231 MS.gene052434:CDS 35.0%
!! GGTGTTTTTGACGAAGATTA+GGG - chr6.1:75071303-75071322 None:intergenic 35.0%
!!! ATGGCCATTTTTCAAGAAGA+TGG + chr6.1:75071870-75071889 MS.gene052434:CDS 35.0%
AACGTAGATGAAGACGGAAT+TGG + chr6.1:75071406-75071425 MS.gene052434:CDS 40.0%
AGTTGCTGAGAAAGTTTCTG+AGG + chr6.1:75071729-75071748 MS.gene052434:CDS 40.0%
ATTATGAATTGTTGCCGCCA+TGG + chr6.1:75071539-75071558 MS.gene052434:CDS 40.0%
CGACCTATTCAAATAAACCC+TGG - chr6.1:75071977-75071996 None:intergenic 40.0%
CTGAGGAGTTGAAAGTTGAA+AGG + chr6.1:75071746-75071765 MS.gene052434:CDS 40.0%
GATGAAGACGGAATTGGAAA+TGG + chr6.1:75071412-75071431 MS.gene052434:CDS 40.0%
GGAATTGGAAATGGGTATGT+TGG + chr6.1:75071421-75071440 MS.gene052434:CDS 40.0%
GTGTATTGGATAAGGTGAAG+AGG + chr6.1:75071788-75071807 MS.gene052434:CDS 40.0%
TACTAAGAGGCAACAGATGA+TGG + chr6.1:75072179-75072198 MS.gene052434:CDS 40.0%
TTATGAATTGTTGCCGCCAT+GGG + chr6.1:75071540-75071559 MS.gene052434:CDS 40.0%
! CGAATGGATTTGATGAGATG+AGG + chr6.1:75071995-75072014 MS.gene052434:CDS 40.0%
! GAGGAATAGTTTGAGATCAG+AGG + chr6.1:75071696-75071715 MS.gene052434:CDS 40.0%
! GATGAGGATGAGGATTTTGA+TGG + chr6.1:75072057-75072076 MS.gene052434:CDS 40.0%
! GTGTAGGAGTGTATTGGATA+AGG + chr6.1:75071780-75071799 MS.gene052434:CDS 40.0%
! GTTGCAGAAGAAGCAGATTT+TGG + chr6.1:75072242-75072261 MS.gene052434:CDS 40.0%
! TAGGGTTTTTGCGTCGTAAA+GGG - chr6.1:75071285-75071304 None:intergenic 40.0%
! TTAGGGTTTTTGCGTCGTAA+AGG - chr6.1:75071286-75071305 None:intergenic 40.0%
! TTCTGAGGATGATGATGATG+AGG + chr6.1:75072041-75072060 MS.gene052434:CDS 40.0%
!! GGGTGTTTTTGACGAAGATT+AGG - chr6.1:75071304-75071323 None:intergenic 40.0%
!! TTGCTTGTGGTGTTGATTCA+GGG + chr6.1:75071932-75071951 MS.gene052434:CDS 40.0%
!!! GTAAAGGGTACCCTTTTGAT+GGG - chr6.1:75071270-75071289 None:intergenic 40.0%
AAAGGAATGTGGCACAGTGT+AGG + chr6.1:75071764-75071783 MS.gene052434:CDS 45.0%
CGATGAGGATGATGTCGATA+GGG + chr6.1:75072080-75072099 MS.gene052434:CDS 45.0%
GAAAATTTACCACTGCCCCA+TGG - chr6.1:75071559-75071578 None:intergenic 45.0%
GAAGCAGTAGATGATGCTGA+TGG + chr6.1:75072297-75072316 MS.gene052434:CDS 45.0%
TATGAATTGTTGCCGCCATG+GGG + chr6.1:75071541-75071560 MS.gene052434:CDS 45.0%
! CAAGAGTATGGACTTGCTTG+TGG + chr6.1:75071919-75071938 MS.gene052434:CDS 45.0%
! GGAGGCTTCGTATAGGATTT+TGG + chr6.1:75072110-75072129 MS.gene052434:CDS 45.0%
! GGATGATGATGATGAGGATG+AGG + chr6.1:75072047-75072066 MS.gene052434:CDS 45.0%
!! ACAGATGATGGAGTTGGAGA+AGG + chr6.1:75072191-75072210 MS.gene052434:CDS 45.0%
!! CTTGCTTGTGGTGTTGATTC+AGG + chr6.1:75071931-75071950 MS.gene052434:CDS 45.0%
!! TGCTTGTGGTGTTGATTCAG+GGG + chr6.1:75071933-75071952 MS.gene052434:CDS 45.0%
!!! CGTAAAGGGTACCCTTTTGA+TGG - chr6.1:75071271-75071290 None:intergenic 45.0%
!!! TGAGGATTTTGATGGCGATG+AGG + chr6.1:75072065-75072084 MS.gene052434:CDS 45.0%
AAAATGCGAAGTGGCCCTAG+TGG + chr6.1:75071484-75071503 MS.gene052434:CDS 50.0%
AAGAGGAGGAGGCTTCGTAT+AGG + chr6.1:75072103-75072122 MS.gene052434:CDS 50.0%
AATTTACCACTGCCCCATGG+CGG - chr6.1:75071556-75071575 None:intergenic 50.0%
CGAGTTCTGTCCATTCCTCT+GGG + chr6.1:75071602-75071621 MS.gene052434:CDS 50.0%
GATGAGATGAGGGATAGTCC+TGG + chr6.1:75072006-75072025 MS.gene052434:CDS 50.0%
GCGATGAGGATGATGTCGAT+AGG + chr6.1:75072079-75072098 MS.gene052434:CDS 50.0%
GGATGATGTCGATAGGGAAG+AGG + chr6.1:75072086-75072105 MS.gene052434:CDS 50.0%
TCAGAACTCTCAGACTCACC+AGG - chr6.1:75072027-75072046 None:intergenic 50.0%
TCGAGTGCGAGACAAGAGTA+TGG + chr6.1:75071907-75071926 MS.gene052434:CDS 50.0%
TCGAGTTCTGTCCATTCCTC+TGG + chr6.1:75071601-75071620 MS.gene052434:CDS 50.0%
TGATGGAGTTGGAGAAGGTG+AGG + chr6.1:75072196-75072215 MS.gene052434:CDS 50.0%
TGATGTCGATAGGGAAGAGG+AGG + chr6.1:75072089-75072108 MS.gene052434:CDS 50.0%
TGGTGAGTCTGAGAGTTCTG+AGG + chr6.1:75072026-75072045 MS.gene052434:CDS 50.0%
TTCTGTCCATTCCTCTGGGT+CGG + chr6.1:75071606-75071625 MS.gene052434:CDS 50.0%
! GCAGATTTTGGATAGGGCTC+AGG + chr6.1:75072254-75072273 MS.gene052434:CDS 50.0%
! GGCACAGTGTAGGAGTGTAT+TGG + chr6.1:75071774-75071793 MS.gene052434:CDS 50.0%
! TGATGCTGATGGTGACGATG+AGG + chr6.1:75072308-75072327 MS.gene052434:CDS 50.0%
!! GAGGCAACAGATGATGGAGT+TGG + chr6.1:75072185-75072204 MS.gene052434:CDS 50.0%
ATTCCTCCGACCCAGAGGAA+TGG - chr6.1:75071615-75071634 None:intergenic 55.0%
ATTCCTCTGGGTCGGAGGAA+TGG + chr6.1:75071614-75071633 MS.gene052434:CDS 55.0%
CACCACCAAAACCGCCACTA+GGG - chr6.1:75071501-75071520 None:intergenic 55.0%
GGAGTTGGAGAAGGTGAGGT+TGG + chr6.1:75072200-75072219 MS.gene052434:CDS 55.0%
TGTCGATAGGGAAGAGGAGG+AGG + chr6.1:75072092-75072111 MS.gene052434:CDS 55.0%
ATGCGAAGTGGCCCTAGTGG+CGG + chr6.1:75071487-75071506 MS.gene052434:CDS 60.0%
CCACCACCAAAACCGCCACT+AGG - chr6.1:75071502-75071521 None:intergenic 60.0%
TGTCCATTCCTCCGACCCAG+AGG - chr6.1:75071620-75071639 None:intergenic 60.0%
TGTCCATTCCTCTGGGTCGG+AGG + chr6.1:75071609-75071628 MS.gene052434:CDS 60.0%
! AGTGGCCCTAGTGGCGGTTT+TGG + chr6.1:75071493-75071512 MS.gene052434:CDS 60.0%
!! CCTAGTGGCGGTTTTGGTGG+TGG + chr6.1:75071499-75071518 MS.gene052434:CDS 60.0%
!!! AGTGGCGGTTTTGGTGGTGG+TGG + chr6.1:75071502-75071521 MS.gene052434:CDS 60.0%
TTGTTGCCGCCATGGGGCAG+TGG + chr6.1:75071547-75071566 MS.gene052434:CDS 65.0%
!! GGCCCTAGTGGCGGTTTTGG+TGG + chr6.1:75071496-75071515 MS.gene052434:CDS 65.0%
!!! GGCGGTTTTGGTGGTGGTGG+TGG + chr6.1:75071505-75071524 MS.gene052434:CDS 65.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 75071238 75072365 75071238 ID=MS.gene052434
chr6.1 mRNA 75071238 75072365 75071238 ID=MS.gene052434.t1;Parent=MS.gene052434
chr6.1 exon 75071238 75072365 75071238 ID=MS.gene052434.t1.exon1;Parent=MS.gene052434.t1
chr6.1 CDS 75071238 75072365 75071238 ID=cds.MS.gene052434.t1;Parent=MS.gene052434.t1
Gene Sequence

>MS.gene052434

ATGGACGACATGGAAGACGATTCAAGATACCCATCAAAAGGGTACCCTTTACGACGCAAAAACCCTAATCTTCGTCAAAAACACCCAATTCGTAACTTACAATATCAACGCTACAACGATCGCGAAGAAGATTTCGAAGACGATGAACCCGAAGAATTCGATGATTATAACGTAGATGAAGACGGAATTGGAAATGGGTATGTTGGAAATTTTGAAGAAAATGTTGGGTTTGTTAGAAAAAAGAGAAAAATGCGAAGTGGCCCTAGTGGCGGTTTTGGTGGTGGTGGTGGTTCTGTGTCGAATTATGAATTGTTGCCGCCATGGGGCAGTGGTAAATTTTCGAACTTTAATCGTGGTGGAAGTTCGAGTTCTGTCCATTCCTCTGGGTCGGAGGAATGGACAGAACACGCGACGTTTGTGTTGTTAGAGATATGGGGTGAGAAGTTTCTTCAAATTGGGAGGAATAGTTTGAGATCAGAGGAATGGCATGAAGTTGCTGAGAAAGTTTCTGAGGAGTTGAAAGTTGAAAGGAATGTGGCACAGTGTAGGAGTGTATTGGATAAGGTGAAGAGGAGATATAAGAAAGAGAAGAGTAGAATGGATGAAATGGGTTTGGGTTTAAGTTCTTGTAAATGGCCATTTTTCAAGAAGATGGATATGTTGATGTCGTCGAGTGCGAGACAAGAGTATGGACTTGCTTGTGGTGTTGATTCAGGGGAGTATGTGTTTATGAATACCAGGGTTTATTTGAATAGGTCGAATGGATTTGATGAGATGAGGGATAGTCCTGGTGAGTCTGAGAGTTCTGAGGATGATGATGATGAGGATGAGGATTTTGATGGCGATGAGGATGATGTCGATAGGGAAGAGGAGGAGGCTTCGTATAGGATTTTGGCTGATTCGATTCAAAAATTTGGGAATATATATGAGAAGATTGAGAATACTAAGAGGCAACAGATGATGGAGTTGGAGAAGGTGAGGTTGGATTTTAATAGGGAATTGGAGTTGCAGAAGAAGCAGATTTTGGATAGGGCTCAGGCTGAAATATCGAAAATACAGGAAGCAGTAGATGATGCTGATGGTGACGATGAGGACACAGACACTTCTGCTGATAATCTCAGTGAATAA

Protein sequence

>MS.gene052434.t1

MDDMEDDSRYPSKGYPLRRKNPNLRQKHPIRNLQYQRYNDREEDFEDDEPEEFDDYNVDEDGIGNGYVGNFEENVGFVRKKRKMRSGPSGGFGGGGGSVSNYELLPPWGSGKFSNFNRGGSSSSVHSSGSEEWTEHATFVLLEIWGEKFLQIGRNSLRSEEWHEVAEKVSEELKVERNVAQCRSVLDKVKRRYKKEKSRMDEMGLGLSSCKWPFFKKMDMLMSSSARQEYGLACGVDSGEYVFMNTRVYLNRSNGFDEMRDSPGESESSEDDDDEDEDFDGDEDDVDREEEEASYRILADSIQKFGNIYEKIENTKRQQMMELEKVRLDFNRELELQKKQILDRAQAEISKIQEAVDDADGDDEDTDTSADNLSE