Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene42558.t1 | XP_003625102.2 | 95.2 | 1228 | 53 | 1 | 1 | 1228 | 1 | 1222 | 0.00E+00 | 2194.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene42558.t1 | Q5R8D8 | 27.1 | 506 | 283 | 9 | 668 | 1173 | 34 | 453 | 2.7e-36 | 156.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene42558.t1 | G7KSM0 | 95.2 | 1228 | 53 | 1 | 1 | 1228 | 1 | 1222 | 0.0e+00 | 2194.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049300 | MS.gene42558 | 0.807068 | 6.06E-50 | -1.69E-46 |
MS.gene049744 | MS.gene42558 | 0.857 | 2.20E-62 | -1.69E-46 |
MS.gene050213 | MS.gene42558 | 0.806 | 1.02E-49 | -1.69E-46 |
MS.gene050257 | MS.gene42558 | 0.816058 | 6.73E-52 | -1.69E-46 |
MS.gene050258 | MS.gene42558 | 0.808573 | 2.90E-50 | -1.69E-46 |
MS.gene050348 | MS.gene42558 | 0.820918 | 5.32E-53 | -1.69E-46 |
MS.gene050551 | MS.gene42558 | 0.806565 | 7.73E-50 | -1.69E-46 |
MS.gene051209 | MS.gene42558 | 0.844727 | 6.32E-59 | -1.69E-46 |
MS.gene051834 | MS.gene42558 | 0.81907 | 1.41E-52 | -1.69E-46 |
MS.gene051835 | MS.gene42558 | 0.829871 | 4.04E-55 | -1.69E-46 |
MS.gene052168 | MS.gene42558 | 0.81687 | 4.43E-52 | -1.69E-46 |
MS.gene052307 | MS.gene42558 | 0.820657 | 6.11E-53 | -1.69E-46 |
MS.gene052609 | MS.gene42558 | 0.85183 | 6.87E-61 | -1.69E-46 |
MS.gene052669 | MS.gene42558 | 0.811794 | 5.86E-51 | -1.69E-46 |
MS.gene052775 | MS.gene42558 | 0.851171 | 1.06E-60 | -1.69E-46 |
MS.gene052776 | MS.gene42558 | 0.848204 | 7.11E-60 | -1.69E-46 |
MS.gene053486 | MS.gene42558 | 0.843836 | 1.10E-58 | -1.69E-46 |
MS.gene054641 | MS.gene42558 | 0.838403 | 2.94E-57 | -1.69E-46 |
MS.gene056045 | MS.gene42558 | 0.842444 | 2.58E-58 | -1.69E-46 |
MS.gene056507 | MS.gene42558 | 0.82255 | 2.23E-53 | -1.69E-46 |
MS.gene056519 | MS.gene42558 | 0.8429 | 1.95E-58 | -1.69E-46 |
MS.gene056622 | MS.gene42558 | 0.823099 | 1.66E-53 | -1.69E-46 |
MS.gene056973 | MS.gene42558 | 0.808058 | 3.73E-50 | -1.69E-46 |
MS.gene058289 | MS.gene42558 | 0.848574 | 5.62E-60 | -1.69E-46 |
MS.gene058292 | MS.gene42558 | 0.805623 | 1.22E-49 | -1.69E-46 |
MS.gene058633 | MS.gene42558 | 0.802181 | 6.34E-49 | -1.69E-46 |
MS.gene058919 | MS.gene42558 | 0.830302 | 3.17E-55 | -1.69E-46 |
MS.gene059439 | MS.gene42558 | 0.81953 | 1.11E-52 | -1.69E-46 |
MS.gene060351 | MS.gene42558 | 0.802369 | 5.80E-49 | -1.69E-46 |
MS.gene060777 | MS.gene42558 | 0.802103 | 6.58E-49 | -1.69E-46 |
MS.gene060933 | MS.gene42558 | 0.843928 | 1.04E-58 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene42558.t1 | MTR_7g090940 | 95.114 | 1228 | 54 | 1 | 1 | 1228 | 1 | 1222 | 0.0 | 2344 |
MS.gene42558.t1 | MTR_4g076240 | 41.112 | 827 | 406 | 20 | 456 | 1224 | 281 | 1084 | 2.33e-168 | 529 |
MS.gene42558.t1 | MTR_2g078020 | 28.173 | 394 | 232 | 11 | 650 | 1037 | 208 | 556 | 4.45e-22 | 103 |
MS.gene42558.t1 | MTR_2g078020 | 28.173 | 394 | 232 | 11 | 650 | 1037 | 208 | 556 | 4.48e-22 | 103 |
MS.gene42558.t1 | MTR_7g109360 | 25.806 | 217 | 140 | 6 | 953 | 1155 | 129 | 338 | 4.31e-17 | 85.9 |
MS.gene42558.t1 | MTR_7g109360 | 25.806 | 217 | 140 | 6 | 953 | 1155 | 175 | 384 | 4.96e-17 | 86.3 |
MS.gene42558.t1 | MTR_7g109360 | 25.806 | 217 | 140 | 6 | 953 | 1155 | 257 | 466 | 8.30e-17 | 85.9 |
MS.gene42558.t1 | MTR_3g074230 | 25.255 | 392 | 201 | 12 | 669 | 1038 | 198 | 519 | 4.71e-16 | 84.0 |
MS.gene42558.t1 | MTR_5g063200 | 26.882 | 372 | 220 | 12 | 669 | 1038 | 218 | 539 | 5.14e-16 | 83.6 |
MS.gene42558.t1 | MTR_3g074230 | 25.255 | 392 | 201 | 12 | 669 | 1038 | 198 | 519 | 6.12e-16 | 83.2 |
MS.gene42558.t1 | MTR_3g102140 | 23.798 | 416 | 237 | 11 | 815 | 1156 | 49 | 458 | 4.92e-15 | 79.7 |
MS.gene42558.t1 | MTR_3g087480 | 24.074 | 378 | 234 | 9 | 664 | 1038 | 224 | 551 | 3.62e-14 | 77.4 |
MS.gene42558.t1 | MTR_1g087270 | 25.417 | 240 | 154 | 7 | 932 | 1155 | 240 | 470 | 4.49e-14 | 77.4 |
MS.gene42558.t1 | MTR_7g101070 | 24.074 | 486 | 273 | 13 | 700 | 1173 | 25 | 426 | 5.29e-11 | 67.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene42558.t1 | AT2G41520 | 43.314 | 845 | 390 | 11 | 386 | 1228 | 351 | 1108 | 0.0 | 628 |
MS.gene42558.t1 | AT2G41520 | 43.314 | 845 | 390 | 11 | 386 | 1228 | 251 | 1008 | 0.0 | 627 |
MS.gene42558.t1 | AT5G12430 | 44.487 | 789 | 367 | 19 | 448 | 1193 | 371 | 1131 | 0.0 | 592 |
MS.gene42558.t1 | AT2G41520 | 41.065 | 845 | 378 | 12 | 386 | 1228 | 351 | 1077 | 0.0 | 575 |
MS.gene42558.t1 | AT3G62570 | 22.646 | 446 | 259 | 9 | 793 | 1155 | 22 | 464 | 4.11e-17 | 87.0 |
MS.gene42558.t1 | AT1G78120 | 24.934 | 381 | 218 | 11 | 669 | 1038 | 166 | 489 | 7.10e-17 | 85.9 |
MS.gene42558.t1 | AT3G58620 | 24.495 | 396 | 243 | 15 | 645 | 1028 | 190 | 541 | 2.32e-16 | 84.7 |
MS.gene42558.t1 | AT3G58620 | 24.495 | 396 | 243 | 15 | 645 | 1028 | 190 | 541 | 2.49e-16 | 84.7 |
MS.gene42558.t1 | AT1G78120 | 25.485 | 361 | 201 | 11 | 669 | 1018 | 166 | 469 | 5.77e-16 | 82.8 |
MS.gene42558.t1 | AT4G02100 | 25.792 | 221 | 144 | 6 | 953 | 1159 | 252 | 466 | 1.40e-15 | 82.0 |
MS.gene42558.t1 | AT1G53300 | 24.409 | 381 | 229 | 10 | 669 | 1041 | 234 | 563 | 3.46e-15 | 81.3 |
MS.gene42558.t1 | AT3G14950 | 25.624 | 441 | 274 | 11 | 606 | 1037 | 195 | 590 | 3.54e-15 | 81.3 |
MS.gene42558.t1 | AT1G02650 | 23.198 | 444 | 264 | 15 | 787 | 1160 | 5 | 441 | 1.81e-14 | 78.2 |
MS.gene42558.t1 | AT5G65160 | 24.543 | 383 | 220 | 12 | 666 | 1037 | 240 | 564 | 4.24e-14 | 77.4 |
MS.gene42558.t1 | AT1G02650 | 22.955 | 440 | 262 | 15 | 791 | 1160 | 12 | 444 | 5.97e-14 | 76.6 |
MS.gene42558.t1 | AT2G42580 | 24.250 | 400 | 235 | 15 | 669 | 1047 | 227 | 579 | 4.52e-13 | 74.3 |
MS.gene42558.t1 | AT2G47440 | 23.982 | 221 | 143 | 6 | 955 | 1159 | 236 | 447 | 8.83e-13 | 72.8 |
MS.gene42558.t1 | AT2G47440 | 23.982 | 221 | 143 | 6 | 955 | 1159 | 225 | 436 | 1.06e-12 | 72.8 |
Find 271 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGGAAATGATAACTTTAAAT+TGG | 0.163141 | 7.1:-16396234 | MS.gene42558:CDS |
TACCTTGAGCAGTTCCATTT+TGG | 0.189317 | 7.1:+16399931 | None:intergenic |
TTGCACAATGGCTTCTTCTT+TGG | 0.224034 | 7.1:-16398648 | MS.gene42558:CDS |
GAAGAAATTTAGGAGGAAAA+TGG | 0.235820 | 7.1:-16399160 | MS.gene42558:CDS |
AGGAGACTTATTTCTGTTCT+TGG | 0.235964 | 7.1:-16395789 | MS.gene42558:CDS |
CGTGGAAGATCAAGCCAAAA+TGG | 0.265159 | 7.1:-16395673 | MS.gene42558:CDS |
GCTAAACCGAATCCGGTTTC+TGG | 0.265800 | 7.1:-16400557 | MS.gene42558:CDS |
ATCTTAGGCAAGACTGTATC+AGG | 0.266228 | 7.1:+16399375 | None:intergenic |
AGGAGATCTTCAGACGTTTA+TGG | 0.268148 | 7.1:-16391787 | MS.gene42558:CDS |
TCTGGTGTTTCAGCAGATGC+TGG | 0.283032 | 7.1:-16399324 | MS.gene42558:CDS |
AGAAAAGCTCAAACCTTATC+TGG | 0.287579 | 7.1:+16393053 | None:intergenic |
ATCTAAGTGTTACTTTCGTT+TGG | 0.303602 | 7.1:-16397029 | MS.gene42558:CDS |
AGTAAATCTTCCAAAGAAAA+AGG | 0.303791 | 7.1:-16399705 | MS.gene42558:CDS |
GAAGGCGGAGGCTCTGTATT+TGG | 0.308261 | 7.1:-16397335 | MS.gene42558:intron |
GAAAAGCCACCAGAAGATTC+AGG | 0.313190 | 7.1:+16399585 | None:intergenic |
CATCCTAATCTTTCGCTAGA+AGG | 0.326375 | 7.1:+16398755 | None:intergenic |
GTAAACAGAAGAAGAAATTT+AGG | 0.326434 | 7.1:-16399170 | MS.gene42558:CDS |
AATGGATTCGTCTCCCTATC+AGG | 0.331825 | 7.1:-16399559 | MS.gene42558:CDS |
AACTGCGGTGGCCGTGGTTC+TGG | 0.332619 | 7.1:+16400751 | None:intergenic |
AAGAAATTTAGGAGGAAAAT+GGG | 0.333248 | 7.1:-16399159 | MS.gene42558:CDS |
GAAAATGAAGGTTCTGGTTC+CGG | 0.336332 | 7.1:-16400728 | MS.gene42558:CDS |
CTTGAAACCCCTGAATCTTC+TGG | 0.337232 | 7.1:-16399594 | MS.gene42558:CDS |
GGAGATCTTCAGACGTTTAT+GGG | 0.337259 | 7.1:-16391786 | MS.gene42558:CDS |
AAGTTGATTCTGATTCTGTT+AGG | 0.339925 | 7.1:-16400649 | MS.gene42558:CDS |
AATTCATGGTTTGCTGATTA+CGG | 0.343666 | 7.1:-16400398 | MS.gene42558:CDS |
GCTGCTGCTCATCAAGCTTC+AGG | 0.355265 | 7.1:-16396119 | MS.gene42558:CDS |
CAAGGTTTCTAGTGTTAGTT+CGG | 0.356685 | 7.1:-16400030 | MS.gene42558:CDS |
GTCCGGTAAAGTTGTTTGTT+TGG | 0.360414 | 7.1:-16398445 | MS.gene42558:CDS |
TGCAGCAACACGTATGAGTC+TGG | 0.360806 | 7.1:-16398696 | MS.gene42558:CDS |
ATTCATGGTTTGCTGATTAC+GGG | 0.363056 | 7.1:-16400397 | MS.gene42558:CDS |
ACCATTTGTTCCGCAAGCTT+TGG | 0.367294 | 7.1:+16399956 | None:intergenic |
GTAGGCGATGTTCATTTCTC+TGG | 0.368252 | 7.1:-16399399 | MS.gene42558:CDS |
TGTTGACAGCAAGAGGAATT+CGG | 0.372815 | 7.1:-16400330 | MS.gene42558:CDS |
ACAGAGCCTCCGCCTTCATT+TGG | 0.378270 | 7.1:+16397341 | None:intergenic |
ATCCAAACAAACAACTTTAC+CGG | 0.380619 | 7.1:+16398443 | None:intergenic |
ATTTGGCGATTCAGAATGTT+TGG | 0.383125 | 7.1:+16395746 | None:intergenic |
GATAATGGCAAGTCCTGTTA+TGG | 0.384263 | 7.1:-16399432 | MS.gene42558:CDS |
GGAACAAATGGTGTCCAAAA+TGG | 0.384881 | 7.1:-16399945 | MS.gene42558:CDS |
TTCCCACCACTTGATCCATT+TGG | 0.385843 | 7.1:+16395729 | None:intergenic |
CTGGTGTTTCAGCAGATGCT+GGG | 0.386382 | 7.1:-16399323 | MS.gene42558:CDS |
ACCATCACTTTCTTTCTGTT+CGG | 0.386387 | 7.1:+16400616 | None:intergenic |
GTGTACCTAAGTGGAATTCA+TGG | 0.390734 | 7.1:-16400412 | MS.gene42558:CDS |
AGAACTTCTAACAGACGATA+TGG | 0.391728 | 7.1:-16391724 | MS.gene42558:CDS |
ACGGGCTTTCCATTCACATT+TGG | 0.391861 | 7.1:+16399114 | None:intergenic |
ATCTGCTGTTGTTTCCTGAT+AGG | 0.400609 | 7.1:+16399545 | None:intergenic |
CGACCTTCCACGTGCGGTTG+CGG | 0.402153 | 7.1:+16400832 | None:intergenic |
ATAGCGCTCGGAATATGATT+TGG | 0.402917 | 7.1:-16391860 | MS.gene42558:intron |
CAGCATCCTTGTGCACCTCC+TGG | 0.403847 | 7.1:+16392837 | None:intergenic |
GGACATTATTATAGAACATA+TGG | 0.413155 | 7.1:-16391703 | MS.gene42558:CDS |
GGAAATGATAACTTTAAATT+GGG | 0.415396 | 7.1:-16396233 | MS.gene42558:CDS |
GTTAAGTCGAAGAGTGGAAA+TGG | 0.416270 | 7.1:-16400218 | MS.gene42558:CDS |
CGTGCGGTTGCGGCGGTAGG+AGG | 0.419021 | 7.1:+16400842 | None:intergenic |
TCTAAGTGTTACTTTCGTTT+GGG | 0.420110 | 7.1:-16397028 | MS.gene42558:CDS |
AATCTAGGCTGGTCAGTTGT+TGG | 0.420493 | 7.1:-16392906 | MS.gene42558:intron |
TTGGGGATGAAGGCAGTGTC+TGG | 0.422751 | 7.1:-16392871 | MS.gene42558:CDS |
TGCGGATTGCAGCATGGCTA+TGG | 0.423201 | 7.1:-16396078 | MS.gene42558:CDS |
ACAAATGGTGATGTTGATAA+AGG | 0.426583 | 7.1:-16400272 | MS.gene42558:CDS |
GCAAAGGGGAGAGGAGAATG+TGG | 0.428924 | 7.1:+16400890 | None:intergenic |
TTACAATCGGTAGCAATCGC+TGG | 0.429257 | 7.1:+16399480 | None:intergenic |
TTACTTTCGTTTGGGAAGGC+TGG | 0.429269 | 7.1:-16397020 | MS.gene42558:CDS |
TGATGATGCTAAACCGAATC+CGG | 0.434958 | 7.1:-16400564 | MS.gene42558:CDS |
GCAGTTGAAAATGAAGGTTC+TGG | 0.438840 | 7.1:-16400734 | MS.gene42558:CDS |
GTTGACAGCAAGAGGAATTC+GGG | 0.439659 | 7.1:-16400329 | MS.gene42558:CDS |
TGAATTTGTGTTCGGAAAGC+AGG | 0.439660 | 7.1:-16400357 | MS.gene42558:CDS |
GTTATCTCTCCAAATGTGAA+TGG | 0.439668 | 7.1:-16399123 | MS.gene42558:CDS |
GTTAGTTCGGGAACTAATAC+TGG | 0.441228 | 7.1:-16400017 | MS.gene42558:CDS |
AACACTTCGGACTGCATCTT+AGG | 0.441438 | 7.1:+16399360 | None:intergenic |
TGAAAATTGTACGGAAGATA+CGG | 0.442948 | 7.1:+16399095 | None:intergenic |
GTGGAAGATCAAGCCAAAAT+GGG | 0.446554 | 7.1:-16395672 | MS.gene42558:CDS |
TTCCTGAGTTTGACAAGTCT+CGG | 0.447394 | 7.1:+16400806 | None:intergenic |
ACAAAATGAGATAAAAGTCC+AGG | 0.447430 | 7.1:+16395643 | None:intergenic |
TGTTGGCAAGAAGTGAAGTT+GGG | 0.450406 | 7.1:-16392889 | MS.gene42558:CDS |
TTACTTACATCACCAGAAAC+CGG | 0.452212 | 7.1:+16400545 | None:intergenic |
ATCATGCATACAACCTTGGC+AGG | 0.455975 | 7.1:+16392767 | None:intergenic |
AGTGGAAATGGAAGTGCTAA+TGG | 0.456088 | 7.1:-16400206 | MS.gene42558:CDS |
AGTTGATTCTGATTCTGTTA+GGG | 0.460732 | 7.1:-16400648 | MS.gene42558:CDS |
ATGATTTGGAAGAGGACATA+AGG | 0.464859 | 7.1:-16391846 | MS.gene42558:CDS |
AGAAGTGAAGTTGGGGATGA+AGG | 0.470406 | 7.1:-16392881 | MS.gene42558:CDS |
TCTTCAGACGTTTATGGGAA+TGG | 0.472906 | 7.1:-16391781 | MS.gene42558:CDS |
AGCAAGAGGAATTCGGGTAA+TGG | 0.474649 | 7.1:-16400323 | MS.gene42558:CDS |
GGCGCTGTCAGAATCATCAT+TGG | 0.478721 | 7.1:+16399977 | None:intergenic |
ATCTCTGATCCCATCCTGAC+TGG | 0.480310 | 7.1:+16399866 | None:intergenic |
GCCAAAGCTTGCGGAACAAA+TGG | 0.480609 | 7.1:-16399957 | MS.gene42558:CDS |
GTGCGGTTGCGGCGGTAGGA+GGG | 0.481002 | 7.1:+16400843 | None:intergenic |
CCAAAACAAATTGCTGCAAA+AGG | 0.481821 | 7.1:+16396149 | None:intergenic |
CCACGTGCGGTTGCGGCGGT+AGG | 0.482328 | 7.1:+16400839 | None:intergenic |
TGCGGCGGTAGGAGGGTTGA+CGG | 0.484208 | 7.1:+16400850 | None:intergenic |
AACAAGCAGCTTGTGACCTC+AGG | 0.485269 | 7.1:-16395809 | MS.gene42558:CDS |
GGAACGGAGGTGGCGCATGC+AGG | 0.486794 | 7.1:-16391807 | MS.gene42558:CDS |
ATCTGTACTTTCAGAAAGGT+CGG | 0.488706 | 7.1:+16398623 | None:intergenic |
TCTGCTGTTGTTTCCTGATA+GGG | 0.489589 | 7.1:+16399546 | None:intergenic |
TGTGTAAATGAATTTGTGTT+CGG | 0.490489 | 7.1:-16400365 | MS.gene42558:CDS |
ACATCACCAGAAACCGGATT+CGG | 0.490556 | 7.1:+16400551 | None:intergenic |
GGTAGGAGGGTTGACGGCGT+CGG | 0.490607 | 7.1:+16400856 | None:intergenic |
TTGTACGGGCTTTAAACCTC+CGG | 0.491304 | 7.1:-16399799 | MS.gene42558:CDS |
AAGGTTTCTAGTGTTAGTTC+GGG | 0.491354 | 7.1:-16400029 | MS.gene42558:CDS |
TCATCGGAGTTGATCGGAGA+AGG | 0.491841 | 7.1:+16400920 | None:intergenic |
AGCAGATGATGAAGATCTAA+AGG | 0.494052 | 7.1:-16399529 | MS.gene42558:CDS |
TTTCTACATCCCCTAGCAAA+AGG | 0.495223 | 7.1:+16398499 | None:intergenic |
TTACACTTGAGTAACTATCA+TGG | 0.498377 | 7.1:+16397074 | None:intergenic |
GTCCCTTCTAGCGAAAGATT+AGG | 0.498776 | 7.1:-16398758 | MS.gene42558:CDS |
TCGGCGTTGAAAGGAGCAAA+GGG | 0.499551 | 7.1:+16400875 | None:intergenic |
TCTGTTAGAAGTTCTATCAT+AGG | 0.500077 | 7.1:+16391732 | None:intergenic |
GTAAAGTTGTTTGTTTGGAT+CGG | 0.500458 | 7.1:-16398440 | MS.gene42558:CDS |
GGTATTGATCAGGATGCTAC+AGG | 0.500541 | 7.1:-16399912 | MS.gene42558:CDS |
TTCTAAGACAACCACCAGTC+AGG | 0.501464 | 7.1:-16399880 | MS.gene42558:CDS |
GGAAGATTTACTCTTATGTG+TGG | 0.502443 | 7.1:+16399716 | None:intergenic |
CATGCTGAGACGGAAACAAA+TGG | 0.503939 | 7.1:-16400287 | MS.gene42558:CDS |
GAAGATTTACTCTTATGTGT+GGG | 0.503962 | 7.1:+16399717 | None:intergenic |
AACTGCTCAAGGTATTGATC+AGG | 0.505403 | 7.1:-16399922 | MS.gene42558:CDS |
AGCATCCTTGTGCACCTCCT+GGG | 0.505567 | 7.1:+16392838 | None:intergenic |
TTAAACTCGGAAGAGGAGAA+AGG | 0.506147 | 7.1:-16400518 | MS.gene42558:CDS |
GGAGCGAAAAGGATTGAAAC+CGG | 0.506544 | 7.1:+16400709 | None:intergenic |
GAGAGGACTTTGGATGCAGC+TGG | 0.506593 | 7.1:-16397424 | MS.gene42558:CDS |
CTTACCTGATCGGAGCGAAA+AGG | 0.506894 | 7.1:+16400698 | None:intergenic |
TTGTTGGCAAGAAGTGAAGT+TGG | 0.507864 | 7.1:-16392890 | MS.gene42558:CDS |
TGGATCTCAATCCAATGAAA+AGG | 0.508329 | 7.1:-16395769 | MS.gene42558:CDS |
CGCTCCGATCAGGTAAGTGA+GGG | 0.508810 | 7.1:-16400692 | MS.gene42558:CDS |
AGAAAGATTGCTCCAAATGA+AGG | 0.512898 | 7.1:-16397353 | MS.gene42558:CDS |
TGATGTGATGGACAAGTCTC+AGG | 0.514273 | 7.1:-16399040 | MS.gene42558:CDS |
AGGTGCACAAGGATGCTGAT+AGG | 0.514354 | 7.1:-16392832 | MS.gene42558:CDS |
CCTGAGTCTCCATTGGTGAC+AGG | 0.517072 | 7.1:+16398963 | None:intergenic |
TCTTCTTAAAACCAGCATGC+AGG | 0.517281 | 7.1:-16396254 | MS.gene42558:intron |
TAAACTCGGAAGAGGAGAAA+GGG | 0.517645 | 7.1:-16400517 | MS.gene42558:CDS |
TTGAAAGGAGCAAAGGGGAG+AGG | 0.519095 | 7.1:+16400881 | None:intergenic |
GAAGGGAAGTGCATCGGCGC+CGG | 0.519334 | 7.1:+16400938 | None:intergenic |
AAACATTCTGAATCGCCAAA+TGG | 0.521477 | 7.1:-16395744 | MS.gene42558:CDS |
TCTCTGACTGTCTTTACAAT+CGG | 0.522319 | 7.1:+16399467 | None:intergenic |
TCTGTACTTTCAGAAAGGTC+GGG | 0.524726 | 7.1:+16398624 | None:intergenic |
AGTGTTACTTTCGTTTGGGA+AGG | 0.526344 | 7.1:-16397024 | MS.gene42558:CDS |
ATCCTAATCTTTCGCTAGAA+GGG | 0.527501 | 7.1:+16398756 | None:intergenic |
TATAACAAGTGCTTGGAGTC+CGG | 0.529113 | 7.1:-16398462 | MS.gene42558:CDS |
TCTGAAGATGCTCAAGTGAA+TGG | 0.532480 | 7.1:-16399834 | MS.gene42558:CDS |
CAAGTGTAAAATTGTGGAGA+TGG | 0.532769 | 7.1:-16397060 | MS.gene42558:CDS |
TGGAATTGAAGAGTCTTGTA+CGG | 0.533452 | 7.1:-16399814 | MS.gene42558:CDS |
ACTTGAGTAACTATCATGGA+TGG | 0.535580 | 7.1:+16397078 | None:intergenic |
TCTCATCTGTACTTTCAGAA+AGG | 0.535948 | 7.1:+16398619 | None:intergenic |
TAAGAAATTAAACTCGGAAG+AGG | 0.536672 | 7.1:-16400525 | MS.gene42558:CDS |
TTGACGGCGTCGGCGTTGAA+AGG | 0.537641 | 7.1:+16400866 | None:intergenic |
ATATCAGCTGCTGTATCCGA+TGG | 0.539327 | 7.1:+16393113 | None:intergenic |
TGAAGGTTTACAGAAAGCTC+AGG | 0.540939 | 7.1:-16398397 | MS.gene42558:intron |
ATTCCTTAGCTTTATGAGCA+CGG | 0.542261 | 7.1:+16398822 | None:intergenic |
GTTACTCAAGTGTAAAATTG+TGG | 0.544184 | 7.1:-16397066 | MS.gene42558:CDS |
CCTGTCACCAATGGAGACTC+AGG | 0.544866 | 7.1:-16398963 | MS.gene42558:intron |
GGGCTTTAAACCTCCGGCAT+GGG | 0.545080 | 7.1:-16399793 | MS.gene42558:CDS |
TGTCAAACTCAGGAAGCAAT+CGG | 0.546387 | 7.1:-16400798 | MS.gene42558:CDS |
TAGGAAGATCTATAACCATC+GGG | 0.546670 | 7.1:+16391751 | None:intergenic |
AAAAGCCACCAGAAGATTCA+GGG | 0.550117 | 7.1:+16399586 | None:intergenic |
GGAATTGAAGAGTCTTGTAC+GGG | 0.553282 | 7.1:-16399813 | MS.gene42558:CDS |
TGCTTTAGAACTACTTACAA+AGG | 0.555873 | 7.1:-16397398 | MS.gene42558:CDS |
TACAATCGGTAGCAATCGCT+GGG | 0.556998 | 7.1:+16399481 | None:intergenic |
AAGTTGTCTTTAAAACAAGA+AGG | 0.557340 | 7.1:+16399768 | None:intergenic |
CGGGCTTTAAACCTCCGGCA+TGG | 0.558729 | 7.1:-16399794 | MS.gene42558:CDS |
TGATAGGGAGACGAATCCAT+TGG | 0.559803 | 7.1:+16399561 | None:intergenic |
TAAGGAAACTTTACAAACAA+AGG | 0.560437 | 7.1:-16391828 | MS.gene42558:CDS |
TCGCTCCGATCAGGTAAGTG+AGG | 0.561591 | 7.1:-16400693 | MS.gene42558:CDS |
TCTCAGACATCATCCAGATA+AGG | 0.562866 | 7.1:-16393066 | MS.gene42558:intron |
CCTACCGCCGCAACCGCACG+TGG | 0.563173 | 7.1:-16400839 | MS.gene42558:CDS |
GACTCATACGTGTTGCTGCA+CGG | 0.563705 | 7.1:+16398699 | None:intergenic |
CGCCAAATGGATCAAGTGGT+GGG | 0.564167 | 7.1:-16395731 | MS.gene42558:CDS |
AGGAATCTGTTGACAGCAAG+AGG | 0.564401 | 7.1:-16400337 | MS.gene42558:CDS |
ATCTCTAACCATCTCATGCA+AGG | 0.565110 | 7.1:+16395836 | None:intergenic |
CATCCCAAATTCAATGTCAC+CGG | 0.565284 | 7.1:-16400957 | None:intergenic |
GTCATCACATTCTGATGTGA+TGG | 0.565578 | 7.1:-16399052 | MS.gene42558:CDS |
ATAGGAAGATCTATAACCAT+CGG | 0.565689 | 7.1:+16391750 | None:intergenic |
AAGACAACCACCAGTCAGGA+TGG | 0.565848 | 7.1:-16399876 | MS.gene42558:CDS |
AAGAGCCACCTTGCATGAGA+TGG | 0.567050 | 7.1:-16395844 | MS.gene42558:CDS |
AAGGATTAGAGAAGCTCTAG+AGG | 0.567222 | 7.1:-16398672 | MS.gene42558:CDS |
GCGATGTTATAACAAGTGCT+TGG | 0.567499 | 7.1:-16398469 | MS.gene42558:CDS |
GTTTGCTGATTACGGGGAGA+GGG | 0.567524 | 7.1:-16400390 | MS.gene42558:CDS |
CGGCTTCGACCTTCCACGTG+CGG | 0.567733 | 7.1:+16400826 | None:intergenic |
CAAGTGGTGGGAAAGAATCA+AGG | 0.570328 | 7.1:-16395719 | MS.gene42558:CDS |
GACAGAACCTGAGTCTCCAT+TGG | 0.570339 | 7.1:+16398956 | None:intergenic |
CAAAATGAGATAAAAGTCCA+GGG | 0.571015 | 7.1:+16395644 | None:intergenic |
GGTTTGCTGATTACGGGGAG+AGG | 0.571612 | 7.1:-16400391 | MS.gene42558:CDS |
GAAAATTGTACGGAAGATAC+GGG | 0.572076 | 7.1:+16399096 | None:intergenic |
AGCCGAGACTTGTCAAACTC+AGG | 0.574180 | 7.1:-16400808 | MS.gene42558:CDS |
TAATCTTTCGCTAGAAGGGA+CGG | 0.575166 | 7.1:+16398760 | None:intergenic |
TTGAAGCAGCCTGTCACCAA+TGG | 0.575547 | 7.1:-16398972 | MS.gene42558:CDS |
CTGGTGGTTGTCTTAGAACA+AGG | 0.576000 | 7.1:+16399885 | None:intergenic |
AAACAAGAAGGATCCCATGC+CGG | 0.578489 | 7.1:+16399780 | None:intergenic |
AGAATGTGGAGTTGTGTCAT+CGG | 0.578611 | 7.1:+16400904 | None:intergenic |
TCTGACAGCGCCAAAGCTTG+CGG | 0.580297 | 7.1:-16399966 | MS.gene42558:CDS |
CCGCCGCAACCGCACGTGGA+AGG | 0.581540 | 7.1:-16400835 | MS.gene42558:CDS |
CTCGGAATATGATTTGGAAG+AGG | 0.584033 | 7.1:-16391854 | MS.gene42558:CDS |
GGTTCTGGTCTTAGACCTTG+CGG | 0.587306 | 7.1:+16400766 | None:intergenic |
AGAAATTTAGGAGGAAAATG+GGG | 0.587523 | 7.1:-16399158 | MS.gene42558:CDS |
GGTAAGTGGTGAAAATTGTA+CGG | 0.588702 | 7.1:+16399086 | None:intergenic |
GTCGGCGTTGAAAGGAGCAA+AGG | 0.588947 | 7.1:+16400874 | None:intergenic |
GAACCGTGCTCATAAAGCTA+AGG | 0.590318 | 7.1:-16398825 | MS.gene42558:CDS |
AATTTCCCAGGAGGTGCACA+AGG | 0.592431 | 7.1:-16392843 | MS.gene42558:CDS |
GGATGAAGGCAGTGTCTGGA+AGG | 0.593314 | 7.1:-16392867 | MS.gene42558:CDS |
TCGCCAAATGGATCAAGTGG+TGG | 0.593400 | 7.1:-16395732 | MS.gene42558:CDS |
AAGATGCAGTCCGAAGTGTT+CGG | 0.593687 | 7.1:-16399357 | MS.gene42558:CDS |
GAAGATGTTAAGTCGAAGAG+TGG | 0.594496 | 7.1:-16400224 | MS.gene42558:CDS |
ATCGGAGAAGGGAAGTGCAT+CGG | 0.596046 | 7.1:+16400932 | None:intergenic |
AAAACCCTCACTTACCTGAT+CGG | 0.596206 | 7.1:+16400688 | None:intergenic |
TGTAAAGACAGTCAGAGAGG+TGG | 0.597397 | 7.1:-16399462 | MS.gene42558:CDS |
TACAAACAAAGGAACGGAGG+TGG | 0.598340 | 7.1:-16391817 | MS.gene42558:CDS |
GCAGCAACACGTATGAGTCT+GGG | 0.598784 | 7.1:-16398695 | MS.gene42558:CDS |
GTCCAAAATGGAACTGCTCA+AGG | 0.599107 | 7.1:-16399933 | MS.gene42558:CDS |
CCTTCCACGTGCGGTTGCGG+CGG | 0.600483 | 7.1:+16400835 | None:intergenic |
TCTGCAGGATCCACTGTAGA+GGG | 0.602331 | 7.1:-16399210 | MS.gene42558:CDS |
CCTTGATGAAAATTATGCAA+AGG | 0.602678 | 7.1:-16396054 | MS.gene42558:intron |
GCCACCGCAGTTGAAAATGA+AGG | 0.602808 | 7.1:-16400740 | MS.gene42558:CDS |
ACTGAACATCAACGATCATG+AGG | 0.604078 | 7.1:-16400126 | MS.gene42558:CDS |
TTCTGCAGGATCCACTGTAG+AGG | 0.605280 | 7.1:-16399211 | MS.gene42558:CDS |
GAAACCCCTGAATCTTCTGG+TGG | 0.605541 | 7.1:-16399591 | MS.gene42558:CDS |
CTTGAGTAACTATCATGGAT+GGG | 0.607164 | 7.1:+16397079 | None:intergenic |
TTCATGGTTTGCTGATTACG+GGG | 0.607216 | 7.1:-16400396 | MS.gene42558:CDS |
ATTGCTCCAAATGAAGGCGG+AGG | 0.607908 | 7.1:-16397347 | MS.gene42558:CDS |
GACATGTTCGCAGTGGTAAG+TGG | 0.609310 | 7.1:+16399072 | None:intergenic |
GCAAACCATGAATTCCACTT+AGG | 0.609553 | 7.1:+16400407 | None:intergenic |
TATCTAGTAATATCAAATCA+CGG | 0.610379 | 7.1:-16396172 | MS.gene42558:CDS |
AGACAACCACCAGTCAGGAT+GGG | 0.610723 | 7.1:-16399875 | MS.gene42558:CDS |
TGTCTGGAAGGAAATTTCCC+AGG | 0.610887 | 7.1:-16392855 | MS.gene42558:CDS |
TCTCTTCAGAGTTTGAGGTG+AGG | 0.610966 | 7.1:+16399295 | None:intergenic |
GAATCGCCAAATGGATCAAG+TGG | 0.611399 | 7.1:-16395735 | MS.gene42558:CDS |
TCACATGTAAGTAGTAGCAA+TGG | 0.612024 | 7.1:-16400074 | MS.gene42558:CDS |
AATGGTGATGTTGATAAAGG+TGG | 0.612830 | 7.1:-16400269 | MS.gene42558:CDS |
GTTGTGTCATCGGAGTTGAT+CGG | 0.613425 | 7.1:+16400914 | None:intergenic |
CATCGGAGTTGATCGGAGAA+GGG | 0.614036 | 7.1:+16400921 | None:intergenic |
AACAGAAGAAGAAATTTAGG+AGG | 0.614290 | 7.1:-16399167 | MS.gene42558:CDS |
ATGGAGATTCATATTCTCGA+TGG | 0.615596 | 7.1:-16391684 | MS.gene42558:CDS |
AGGAATTCGGGTAATGGACC+CGG | 0.616549 | 7.1:-16400317 | MS.gene42558:CDS |
AGCCATGCTGCAATCCGCAA+TGG | 0.619597 | 7.1:+16396082 | None:intergenic |
TCAAATTGCTGATGCCATTG+CGG | 0.621776 | 7.1:-16396096 | MS.gene42558:CDS |
AAACTTTACAAACAAAGGAA+CGG | 0.622208 | 7.1:-16391823 | MS.gene42558:CDS |
TGCCATTGCGGATTGCAGCA+TGG | 0.622816 | 7.1:-16396084 | MS.gene42558:CDS |
TCTGATCCCATCCTGACTGG+TGG | 0.623309 | 7.1:+16399869 | None:intergenic |
TATACTTTCAGACCCTGCCA+AGG | 0.624596 | 7.1:-16392780 | MS.gene42558:intron |
AAAGCTACTACCGAACACTT+CGG | 0.624764 | 7.1:+16399347 | None:intergenic |
CTGAACATCAACGATCATGA+GGG | 0.625359 | 7.1:-16400125 | MS.gene42558:CDS |
TACAGCAGCTGATATCAAGA+AGG | 0.626456 | 7.1:-16393105 | MS.gene42558:CDS |
GTTGGCAAGAAGTGAAGTTG+GGG | 0.629862 | 7.1:-16392888 | MS.gene42558:CDS |
TACCAGAGGAATTAAACCAT+CGG | 0.629931 | 7.1:-16393129 | MS.gene42558:intron |
TCCGAACAGAAAGAAAGTGA+TGG | 0.634127 | 7.1:-16400617 | MS.gene42558:CDS |
GGGAAACTATACAGAAGCAG+TGG | 0.640234 | 7.1:-16396213 | MS.gene42558:CDS |
TGGAAGATCAAGCCAAAATG+GGG | 0.645673 | 7.1:-16395671 | MS.gene42558:CDS |
TGTGTTTGGAGGAAGTCACA+AGG | 0.649120 | 7.1:-16400048 | MS.gene42558:CDS |
GTAACAGTAGAAGCAGCTGA+AGG | 0.649689 | 7.1:-16398414 | MS.gene42558:CDS |
TGCAGAAAAGAATTTCCGCA+CGG | 0.655824 | 7.1:-16397128 | MS.gene42558:CDS |
AGCTCTAGAGGATTGCACAA+TGG | 0.656021 | 7.1:-16398660 | MS.gene42558:CDS |
AAGCTTGATGAGCAGCAGCA+CGG | 0.659642 | 7.1:+16396123 | None:intergenic |
AATCGGCGTCACAAACCGCA+AGG | 0.659869 | 7.1:-16400781 | MS.gene42558:CDS |
CAATGAAGTACCCTCTACAG+TGG | 0.664316 | 7.1:+16399200 | None:intergenic |
GAACAGAAATAAGTCTCCTG+AGG | 0.664806 | 7.1:+16395793 | None:intergenic |
TGTAAGTAAGAAATTAAACT+CGG | 0.665065 | 7.1:-16400531 | MS.gene42558:CDS |
AAAGCCACCAGAAGATTCAG+GGG | 0.667150 | 7.1:+16399587 | None:intergenic |
TCTTAGGCAAGACTGTATCA+GGG | 0.671094 | 7.1:+16399376 | None:intergenic |
GCTGAGGAACTCTACACACA+AGG | 0.671125 | 7.1:-16398791 | MS.gene42558:CDS |
AAATGAGATAAAAGTCCAGG+GGG | 0.672917 | 7.1:+16395646 | None:intergenic |
AAAATGAGATAAAAGTCCAG+GGG | 0.674471 | 7.1:+16395645 | None:intergenic |
CAAGAAGGATCCCATGCCGG+AGG | 0.678592 | 7.1:+16399783 | None:intergenic |
AAGATTGCTCCAAATGAAGG+CGG | 0.679324 | 7.1:-16397350 | MS.gene42558:CDS |
TATCAAGAAGGCATATCACA+AGG | 0.679792 | 7.1:-16393093 | MS.gene42558:CDS |
GATAAAGGTGGTGATAAGTG+TGG | 0.681944 | 7.1:-16400257 | MS.gene42558:CDS |
TCATGCATACAACCTTGGCA+GGG | 0.682898 | 7.1:+16392768 | None:intergenic |
CAACACGTATGAGTCTGGGA+AGG | 0.697473 | 7.1:-16398691 | MS.gene42558:CDS |
CTGGAAGGAAATTTCCCAGG+AGG | 0.702784 | 7.1:-16392852 | MS.gene42558:CDS |
GGGAATGGAAGATCACCCGA+TGG | 0.705501 | 7.1:-16391766 | MS.gene42558:CDS |
CTTTACAAACAAAGGAACGG+AGG | 0.706281 | 7.1:-16391820 | MS.gene42558:CDS |
TAAACAACGTCTGCTTACCG+TGG | 0.708201 | 7.1:-16395691 | MS.gene42558:CDS |
AGTTCGGGAACTAATACTGG+CGG | 0.714834 | 7.1:-16400014 | MS.gene42558:CDS |
CGGCGTTGAAAGGAGCAAAG+GGG | 0.717124 | 7.1:+16400876 | None:intergenic |
TCTAACCATCTCATGCAAGG+TGG | 0.719371 | 7.1:+16395839 | None:intergenic |
AAGGTCTAAGACCAGAACCA+CGG | 0.726437 | 7.1:-16400762 | MS.gene42558:CDS |
GATTGTAAAGACAGTCAGAG+AGG | 0.740620 | 7.1:-16399465 | MS.gene42558:CDS |
TGTCTGCACTATTTGCCGTG+CGG | 0.744073 | 7.1:+16397113 | None:intergenic |
ATGTGATGACATGTTCGCAG+TGG | 0.759657 | 7.1:+16399065 | None:intergenic |
AATGAGATAAAAGTCCAGGG+GGG | 0.802976 | 7.1:+16395647 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.1 | gene | 16391681 | 16400966 | 16391681 | ID=MS.gene42558 |
chr7.1 | mRNA | 16391681 | 16400966 | 16391681 | ID=MS.gene42558.t1;Parent=MS.gene42558 |
chr7.1 | exon | 16398964 | 16400966 | 16398964 | ID=MS.gene42558.t1.exon1;Parent=MS.gene42558.t1 |
chr7.1 | CDS | 16398964 | 16400966 | 16398964 | ID=cds.MS.gene42558.t1;Parent=MS.gene42558.t1 |
chr7.1 | exon | 16398611 | 16398850 | 16398611 | ID=MS.gene42558.t1.exon2;Parent=MS.gene42558.t1 |
chr7.1 | CDS | 16398611 | 16398850 | 16398611 | ID=cds.MS.gene42558.t1;Parent=MS.gene42558.t1 |
chr7.1 | exon | 16398398 | 16398527 | 16398398 | ID=MS.gene42558.t1.exon3;Parent=MS.gene42558.t1 |
chr7.1 | CDS | 16398398 | 16398527 | 16398398 | ID=cds.MS.gene42558.t1;Parent=MS.gene42558.t1 |
chr7.1 | exon | 16397336 | 16397488 | 16397336 | ID=MS.gene42558.t1.exon4;Parent=MS.gene42558.t1 |
chr7.1 | CDS | 16397336 | 16397488 | 16397336 | ID=cds.MS.gene42558.t1;Parent=MS.gene42558.t1 |
chr7.1 | exon | 16396965 | 16397200 | 16396965 | ID=MS.gene42558.t1.exon5;Parent=MS.gene42558.t1 |
chr7.1 | CDS | 16396965 | 16397200 | 16396965 | ID=cds.MS.gene42558.t1;Parent=MS.gene42558.t1 |
chr7.1 | exon | 16396790 | 16396856 | 16396790 | ID=MS.gene42558.t1.exon6;Parent=MS.gene42558.t1 |
chr7.1 | CDS | 16396790 | 16396856 | 16396790 | ID=cds.MS.gene42558.t1;Parent=MS.gene42558.t1 |
chr7.1 | exon | 16396055 | 16396261 | 16396055 | ID=MS.gene42558.t1.exon7;Parent=MS.gene42558.t1 |
chr7.1 | CDS | 16396055 | 16396261 | 16396055 | ID=cds.MS.gene42558.t1;Parent=MS.gene42558.t1 |
chr7.1 | exon | 16395645 | 16395877 | 16395645 | ID=MS.gene42558.t1.exon8;Parent=MS.gene42558.t1 |
chr7.1 | CDS | 16395645 | 16395877 | 16395645 | ID=cds.MS.gene42558.t1;Parent=MS.gene42558.t1 |
chr7.1 | exon | 16393067 | 16393145 | 16393067 | ID=MS.gene42558.t1.exon9;Parent=MS.gene42558.t1 |
chr7.1 | CDS | 16393067 | 16393145 | 16393067 | ID=cds.MS.gene42558.t1;Parent=MS.gene42558.t1 |
chr7.1 | exon | 16392781 | 16392921 | 16392781 | ID=MS.gene42558.t1.exon10;Parent=MS.gene42558.t1 |
chr7.1 | CDS | 16392781 | 16392921 | 16392781 | ID=cds.MS.gene42558.t1;Parent=MS.gene42558.t1 |
chr7.1 | exon | 16391681 | 16391878 | 16391681 | ID=MS.gene42558.t1.exon11;Parent=MS.gene42558.t1 |
chr7.1 | CDS | 16391681 | 16391878 | 16391681 | ID=cds.MS.gene42558.t1;Parent=MS.gene42558.t1 |
Gene Sequence |
Protein sequence |