Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42898.t1 | XP_013452470.1 | 98.8 | 328 | 4 | 0 | 1 | 328 | 200 | 527 | 1.70E-186 | 661.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42898.t1 | Q8GYY0 | 63.7 | 328 | 119 | 0 | 1 | 328 | 165 | 492 | 6.9e-128 | 458.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42898.t1 | A0A072UBT9 | 98.8 | 328 | 4 | 0 | 1 | 328 | 200 | 527 | 1.2e-186 | 661.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene89714 | MS.gene42898 | PPI |
| MS.gene42898 | MS.gene048867 | PPI |
| MS.gene06009 | MS.gene42898 | PPI |
| MS.gene55742 | MS.gene42898 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42898.t1 | MTR_6g463260 | 98.780 | 328 | 4 | 0 | 1 | 328 | 200 | 527 | 0.0 | 681 |
| MS.gene42898.t1 | MTR_5g011400 | 60.671 | 328 | 129 | 0 | 1 | 328 | 167 | 494 | 2.02e-155 | 445 |
| MS.gene42898.t1 | MTR_8g101750 | 48.457 | 324 | 166 | 1 | 1 | 323 | 100 | 423 | 7.85e-124 | 362 |
| MS.gene42898.t1 | MTR_6g091760 | 48.765 | 324 | 165 | 1 | 1 | 323 | 108 | 431 | 1.06e-122 | 360 |
| MS.gene42898.t1 | MTR_4g097540 | 47.198 | 339 | 168 | 4 | 1 | 328 | 99 | 437 | 1.69e-121 | 357 |
| MS.gene42898.t1 | MTR_3g103550 | 47.748 | 333 | 168 | 2 | 1 | 328 | 98 | 429 | 2.45e-117 | 347 |
| MS.gene42898.t1 | MTR_5g015020 | 45.373 | 335 | 174 | 4 | 1 | 326 | 99 | 433 | 8.07e-117 | 346 |
| MS.gene42898.t1 | MTR_8g098930 | 44.377 | 329 | 180 | 1 | 1 | 326 | 107 | 435 | 4.33e-111 | 332 |
| MS.gene42898.t1 | MTR_8g101820 | 43.731 | 327 | 170 | 3 | 1 | 326 | 100 | 413 | 2.47e-107 | 320 |
| MS.gene42898.t1 | MTR_8g028600 | 42.331 | 326 | 188 | 0 | 1 | 326 | 106 | 431 | 5.06e-104 | 313 |
| MS.gene42898.t1 | MTR_7g079080 | 42.202 | 327 | 188 | 1 | 1 | 326 | 1 | 327 | 2.89e-102 | 305 |
| MS.gene42898.t1 | MTR_7g079080 | 42.202 | 327 | 188 | 1 | 1 | 326 | 106 | 432 | 1.01e-100 | 305 |
| MS.gene42898.t1 | MTR_5g033230 | 25.215 | 349 | 211 | 12 | 12 | 324 | 129 | 463 | 3.74e-20 | 91.3 |
| MS.gene42898.t1 | MTR_5g033230 | 26.429 | 280 | 164 | 9 | 12 | 262 | 129 | 395 | 6.11e-18 | 84.7 |
| MS.gene42898.t1 | MTR_8g023140 | 21.257 | 334 | 238 | 11 | 12 | 322 | 180 | 511 | 1.10e-14 | 75.1 |
| MS.gene42898.t1 | MTR_2g090615 | 29.670 | 182 | 102 | 5 | 10 | 184 | 105 | 267 | 1.08e-12 | 68.9 |
| MS.gene42898.t1 | MTR_7g106830 | 21.148 | 331 | 229 | 12 | 9 | 326 | 153 | 464 | 1.81e-12 | 68.2 |
| MS.gene42898.t1 | MTR_8g091280 | 21.429 | 294 | 212 | 8 | 9 | 294 | 155 | 437 | 2.47e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42898.t1 | AT5G51690 | 63.720 | 328 | 119 | 0 | 1 | 328 | 42 | 369 | 3.97e-166 | 467 |
| MS.gene42898.t1 | AT5G51690 | 63.720 | 328 | 119 | 0 | 1 | 328 | 165 | 492 | 1.40e-163 | 466 |
| MS.gene42898.t1 | AT1G62960 | 57.879 | 330 | 137 | 2 | 1 | 328 | 223 | 552 | 3.36e-147 | 426 |
| MS.gene42898.t1 | AT4G37770 | 48.640 | 331 | 166 | 1 | 1 | 327 | 99 | 429 | 1.98e-122 | 360 |
| MS.gene42898.t1 | AT2G22810 | 47.590 | 332 | 169 | 2 | 1 | 327 | 99 | 430 | 2.86e-119 | 352 |
| MS.gene42898.t1 | AT3G49700 | 48.494 | 332 | 167 | 1 | 1 | 328 | 99 | 430 | 1.73e-117 | 347 |
| MS.gene42898.t1 | AT5G65800 | 46.687 | 332 | 173 | 1 | 1 | 328 | 99 | 430 | 2.39e-115 | 342 |
| MS.gene42898.t1 | AT4G26200 | 47.734 | 331 | 167 | 2 | 1 | 327 | 114 | 442 | 3.33e-115 | 341 |
| MS.gene42898.t1 | AT4G08040 | 44.985 | 329 | 180 | 1 | 1 | 328 | 97 | 425 | 4.47e-113 | 336 |
| MS.gene42898.t1 | AT4G11280 | 45.062 | 324 | 177 | 1 | 1 | 323 | 110 | 433 | 1.80e-110 | 330 |
| MS.gene42898.t1 | AT1G01480 | 42.121 | 330 | 187 | 2 | 1 | 326 | 1 | 330 | 1.14e-102 | 306 |
| MS.gene42898.t1 | AT3G61510 | 41.284 | 327 | 188 | 2 | 1 | 326 | 106 | 429 | 4.10e-101 | 306 |
| MS.gene42898.t1 | AT1G01480 | 42.121 | 330 | 187 | 2 | 1 | 326 | 107 | 436 | 6.48e-101 | 306 |
| MS.gene42898.t1 | AT1G70580 | 26.176 | 340 | 219 | 14 | 12 | 324 | 129 | 463 | 2.84e-20 | 91.7 |
| MS.gene42898.t1 | AT1G70580 | 26.176 | 340 | 219 | 14 | 12 | 324 | 129 | 463 | 2.84e-20 | 91.7 |
| MS.gene42898.t1 | AT1G70580 | 26.176 | 340 | 219 | 14 | 12 | 324 | 129 | 463 | 2.84e-20 | 91.7 |
| MS.gene42898.t1 | AT1G70580 | 26.176 | 340 | 219 | 14 | 12 | 324 | 129 | 463 | 2.84e-20 | 91.7 |
| MS.gene42898.t1 | AT1G23310 | 25.294 | 340 | 222 | 13 | 12 | 324 | 129 | 463 | 3.50e-20 | 91.3 |
| MS.gene42898.t1 | AT1G23310 | 32.168 | 143 | 94 | 3 | 12 | 152 | 129 | 270 | 8.10e-19 | 87.0 |
| MS.gene42898.t1 | AT1G72330 | 22.000 | 350 | 228 | 12 | 12 | 328 | 196 | 533 | 8.42e-19 | 87.4 |
| MS.gene42898.t1 | AT1G72330 | 28.402 | 169 | 108 | 5 | 12 | 178 | 196 | 353 | 5.31e-18 | 84.7 |
| MS.gene42898.t1 | AT1G72330 | 21.569 | 357 | 222 | 12 | 12 | 322 | 196 | 540 | 2.71e-17 | 83.2 |
| MS.gene42898.t1 | AT1G17290 | 21.512 | 344 | 225 | 11 | 12 | 322 | 199 | 530 | 1.01e-16 | 81.3 |
| MS.gene42898.t1 | AT5G36160 | 29.444 | 180 | 101 | 5 | 8 | 180 | 102 | 262 | 1.51e-13 | 71.2 |
| MS.gene42898.t1 | AT2G22250 | 20.896 | 335 | 227 | 12 | 9 | 327 | 108 | 420 | 7.45e-12 | 66.2 |
| MS.gene42898.t1 | AT2G22250 | 20.896 | 335 | 227 | 12 | 9 | 327 | 155 | 467 | 1.03e-11 | 65.9 |
| MS.gene42898.t1 | AT2G22250 | 20.896 | 335 | 227 | 12 | 9 | 327 | 155 | 467 | 1.03e-11 | 65.9 |
| MS.gene42898.t1 | AT2G24850 | 22.876 | 306 | 208 | 8 | 15 | 309 | 116 | 404 | 3.31e-11 | 64.3 |
Find 74 sgRNAs with CRISPR-Local
Find 84 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAGACTGAAAAGCATTTC+TGG | 0.240255 | 6.4:+42402655 | None:intergenic |
| AGAAAGGAGAACTTGAATTA+TGG | 0.243969 | 6.4:-42402177 | MS.gene42898:CDS |
| TTCACACAACAAAACTGTTT+TGG | 0.255365 | 6.4:-42402440 | MS.gene42898:CDS |
| TCAAAAGACCTTTCGATTGC+TGG | 0.288659 | 6.4:-42402484 | MS.gene42898:CDS |
| AGCACACTTGATTCCTAGTT+TGG | 0.291076 | 6.4:+42402261 | None:intergenic |
| TTCCGATAAACGATTCATTC+AGG | 0.315188 | 6.4:-42402347 | MS.gene42898:CDS |
| GTCGATTACCCTGGATAATA+AGG | 0.320746 | 6.4:+42403111 | None:intergenic |
| AGAATTTGACCCGTCAAATA+TGG | 0.338798 | 6.4:-42403217 | MS.gene42898:CDS |
| TTCCTGAATGAATCGTTTAT+CGG | 0.368687 | 6.4:+42402345 | None:intergenic |
| GAAAGGAGAACTTGAATTAT+GGG | 0.372458 | 6.4:-42402176 | MS.gene42898:CDS |
| AACGATAGTATCTCAATTGC+AGG | 0.378929 | 6.4:+42403174 | None:intergenic |
| AGTTCTCCTTTCTCGCTATA+AGG | 0.388101 | 6.4:+42402187 | None:intergenic |
| GCACCCGTCTTATTCTATTT+CGG | 0.391124 | 6.4:+42402308 | None:intergenic |
| AAATCCCTCTAGTTATTGAT+AGG | 0.392176 | 6.4:-42402048 | MS.gene42898:CDS |
| CTCTAGTTATTGATAGGATT+CGG | 0.409149 | 6.4:-42402042 | MS.gene42898:CDS |
| CTTGACTAAATGCTTGTTCA+AGG | 0.411999 | 6.4:+42402752 | None:intergenic |
| GTCCCTACACCTTATTATCC+AGG | 0.416731 | 6.4:-42403120 | MS.gene42898:CDS |
| ATTGCTGACGAAGTATTTGC+AGG | 0.422387 | 6.4:-42402601 | MS.gene42898:CDS |
| AGTGATTATGCAGCTTTGAC+AGG | 0.425900 | 6.4:-42402855 | MS.gene42898:intron |
| ATCAGACCTTATAGCGAGAA+AGG | 0.438192 | 6.4:-42402193 | MS.gene42898:CDS |
| GCAGCGCCGGTATGTTCTGT+TGG | 0.448478 | 6.4:-42402234 | MS.gene42898:CDS |
| CAGCGCCGGTATGTTCTGTT+GGG | 0.459303 | 6.4:-42402233 | MS.gene42898:CDS |
| ATGCAATGGCAAGCCGATCC+AGG | 0.473529 | 6.4:+42402118 | None:intergenic |
| GCTAAGATAAATATAACTCC+TGG | 0.479435 | 6.4:-42402136 | MS.gene42898:CDS |
| CCGTCTTATTCTATTTCGGT+TGG | 0.485045 | 6.4:+42402312 | None:intergenic |
| GGTGTCAGAATATTGCCAAC+AGG | 0.485404 | 6.4:+42402676 | None:intergenic |
| TCAGTACTTCGACAGTGAAC+AGG | 0.488659 | 6.4:+42402799 | None:intergenic |
| ATATTGCCAACAGGATTTGA+AGG | 0.489937 | 6.4:+42402685 | None:intergenic |
| ACGGGTGCACAATGAGTTTG+TGG | 0.494025 | 6.4:-42402293 | MS.gene42898:CDS |
| AGGGACGTAAGATGGCGTCC+AGG | 0.510730 | 6.4:-42402835 | MS.gene42898:CDS |
| GATGTTAGTACCATATTTGA+CGG | 0.511266 | 6.4:+42403207 | None:intergenic |
| TCAAATATGGTACTAACATC+GGG | 0.513697 | 6.4:-42403204 | MS.gene42898:CDS |
| TGAGATACTATCGTTCTGCT+TGG | 0.519831 | 6.4:-42403166 | MS.gene42898:CDS |
| GTGGATTGTTTAACCAAACT+AGG | 0.523731 | 6.4:-42402274 | MS.gene42898:CDS |
| GTATTTGCAGGCTCCACGTA+CGG | 0.524369 | 6.4:-42402589 | MS.gene42898:CDS |
| GCTTTGACAGGGACGTAAGA+TGG | 0.539978 | 6.4:-42402843 | MS.gene42898:CDS |
| GATAAATATAACTCCTGGAT+CGG | 0.540003 | 6.4:-42402131 | MS.gene42898:CDS |
| TCGATTGCTGGATTTAGAGT+CGG | 0.540691 | 6.4:-42402472 | MS.gene42898:CDS |
| ACCATCCTGGTTCTATGCAA+TGG | 0.546338 | 6.4:+42402104 | None:intergenic |
| GATAATAAGGTGTAGGGACA+AGG | 0.549163 | 6.4:+42403124 | None:intergenic |
| CTCTAAATCCAGCAATCGAA+AGG | 0.554066 | 6.4:+42402476 | None:intergenic |
| TATTGCCAACAGGATTTGAA+GGG | 0.556392 | 6.4:+42402686 | None:intergenic |
| GTCAAATATGGTACTAACAT+CGG | 0.563753 | 6.4:-42403205 | MS.gene42898:CDS |
| ACAGGTATTAAGTCTATCCC+TGG | 0.566102 | 6.4:+42402817 | None:intergenic |
| TCCCTACACCTTATTATCCA+GGG | 0.567075 | 6.4:-42403119 | MS.gene42898:intron |
| AAGTGTGCTAAGAGCAGCGC+CGG | 0.573828 | 6.4:-42402247 | MS.gene42898:CDS |
| GAAGTAACTAACCTCTGTGT+TGG | 0.575820 | 6.4:+42402376 | None:intergenic |
| GCCATTGCATAGAACCAGGA+TGG | 0.576139 | 6.4:-42402105 | MS.gene42898:CDS |
| ATATTCTGAATCGAGAACTT+CGG | 0.576552 | 6.4:+42402543 | None:intergenic |
| TTCTGTTGGGCTGATATGAG+TGG | 0.577234 | 6.4:-42402220 | MS.gene42898:CDS |
| GTGATTATGCAGCTTTGACA+GGG | 0.578099 | 6.4:-42402854 | MS.gene42898:intron |
| ATGTTAGTACCATATTTGAC+GGG | 0.579929 | 6.4:+42403208 | None:intergenic |
| AAACTCCTCGCTTCCGTACG+TGG | 0.582162 | 6.4:+42402576 | None:intergenic |
| ACCCTGGATAATAAGGTGTA+GGG | 0.583042 | 6.4:+42403118 | None:intergenic |
| CGAATCCTATCAATAACTAG+AGG | 0.584201 | 6.4:+42402043 | None:intergenic |
| TCGTTCTGCTTGGCAGACCA+TGG | 0.585867 | 6.4:-42403156 | MS.gene42898:CDS |
| AGCCGCGTTCATATAGTGTA+CGG | 0.586505 | 6.4:-42402511 | MS.gene42898:CDS |
| AAACGAGGAGTCAAAGTTCG+CGG | 0.587306 | 6.4:-42402724 | MS.gene42898:CDS |
| TACCCTGGATAATAAGGTGT+AGG | 0.592046 | 6.4:+42403117 | None:intergenic |
| CAACCGAAATAGAATAAGAC+GGG | 0.592241 | 6.4:-42402311 | MS.gene42898:CDS |
| AAACAAATACGAAACCATCC+TGG | 0.595378 | 6.4:+42402091 | None:intergenic |
| GGGACGTAAGATGGCGTCCA+GGG | 0.596829 | 6.4:-42402834 | MS.gene42898:CDS |
| TTGACTAAATGCTTGTTCAA+GGG | 0.597175 | 6.4:+42402753 | None:intergenic |
| TCGAACCCTTCAAATCCTGT+TGG | 0.599882 | 6.4:-42402691 | MS.gene42898:CDS |
| GGACAAGGAATGCATTTCCA+TGG | 0.601989 | 6.4:+42403139 | None:intergenic |
| GCTTGCCATTGCATAGAACC+AGG | 0.608825 | 6.4:-42402109 | MS.gene42898:CDS |
| TTTATGCATCAGGTTATGGG+AGG | 0.621158 | 6.4:-42403246 | MS.gene42898:CDS |
| AGGCTCCACGTACGGAAGCG+AGG | 0.623216 | 6.4:-42402581 | MS.gene42898:CDS |
| CCAACCGAAATAGAATAAGA+CGG | 0.633080 | 6.4:-42402312 | MS.gene42898:CDS |
| ATCAGCCCAACAGAACATAC+CGG | 0.634233 | 6.4:+42402228 | None:intergenic |
| GAATCCTATCAATAACTAGA+GGG | 0.646614 | 6.4:+42402044 | None:intergenic |
| TTTAGTCAAGCAAGAAAACG+AGG | 0.661177 | 6.4:-42402739 | MS.gene42898:CDS |
| GGCCGTACACTATATGAACG+CGG | 0.742883 | 6.4:+42402509 | None:intergenic |
| CTATATCTGCACCAACACAG+AGG | 0.756871 | 6.4:-42402387 | MS.gene42898:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGTATAAAAACTATTTATA+AGG | - | chr6.4:42402312-42402331 | MS.gene42898:CDS | 10.0% |
| !!! | TAAACTATTGATTCCTATTT+GGG | - | chr6.4:42402191-42402210 | MS.gene42898:CDS | 20.0% |
| !!! | TTAAACTATTGATTCCTATT+TGG | - | chr6.4:42402190-42402209 | MS.gene42898:CDS | 20.0% |
| ! | AGATCAAATAAAACCCAAAT+AGG | + | chr6.4:42402207-42402226 | None:intergenic | 25.0% |
| ! | CATTTCTCTTAAAAGAAGTT+AGG | - | chr6.4:42402240-42402259 | MS.gene42898:CDS | 25.0% |
| !!! | TGAAAATCTGCTCATTTTTT+TGG | + | chr6.4:42402861-42402880 | None:intergenic | 25.0% |
| AAATCCCTCTAGTTATTGAT+AGG | - | chr6.4:42403221-42403240 | MS.gene42898:CDS | 30.0% | |
| AGAAAGGAGAACTTGAATTA+TGG | - | chr6.4:42403092-42403111 | MS.gene42898:intron | 30.0% | |
| ATATTCTGAATCGAGAACTT+CGG | + | chr6.4:42402729-42402748 | None:intergenic | 30.0% | |
| ATGTTAGTACCATATTTGAC+GGG | + | chr6.4:42402064-42402083 | None:intergenic | 30.0% | |
| CTCTAGTTATTGATAGGATT+CGG | - | chr6.4:42403227-42403246 | MS.gene42898:CDS | 30.0% | |
| GAAAGGAGAACTTGAATTAT+GGG | - | chr6.4:42403093-42403112 | MS.gene42898:intron | 30.0% | |
| GAATCCTATCAATAACTAGA+GGG | + | chr6.4:42403228-42403247 | None:intergenic | 30.0% | |
| GATAAATATAACTCCTGGAT+CGG | - | chr6.4:42403138-42403157 | MS.gene42898:CDS | 30.0% | |
| GATGTTAGTACCATATTTGA+CGG | + | chr6.4:42402065-42402084 | None:intergenic | 30.0% | |
| GCTAAGATAAATATAACTCC+TGG | - | chr6.4:42403133-42403152 | MS.gene42898:CDS | 30.0% | |
| GTCAAATATGGTACTAACAT+CGG | - | chr6.4:42402064-42402083 | MS.gene42898:CDS | 30.0% | |
| TCAAATATGGTACTAACATC+GGG | - | chr6.4:42402065-42402084 | MS.gene42898:CDS | 30.0% | |
| TTCCTGAATGAATCGTTTAT+CGG | + | chr6.4:42402927-42402946 | None:intergenic | 30.0% | |
| TTGACTAAATGCTTGTTCAA+GGG | + | chr6.4:42402519-42402538 | None:intergenic | 30.0% | |
| ! | TTCACACAACAAAACTGTTT+TGG | - | chr6.4:42402829-42402848 | MS.gene42898:CDS | 30.0% |
| ! | TTTTACAACTATATCGTTCG+AGG | - | chr6.4:42403198-42403217 | MS.gene42898:CDS | 30.0% |
| AAACAAATACGAAACCATCC+TGG | + | chr6.4:42403181-42403200 | None:intergenic | 35.0% | |
| AACGATAGTATCTCAATTGC+AGG | + | chr6.4:42402098-42402117 | None:intergenic | 35.0% | |
| AGAATTTGACCCGTCAAATA+TGG | - | chr6.4:42402052-42402071 | MS.gene42898:CDS | 35.0% | |
| ATATTGCCAACAGGATTTGA+AGG | + | chr6.4:42402587-42402606 | None:intergenic | 35.0% | |
| CAACCGAAATAGAATAAGAC+GGG | - | chr6.4:42402958-42402977 | MS.gene42898:intron | 35.0% | |
| CCAACCGAAATAGAATAAGA+CGG | - | chr6.4:42402957-42402976 | MS.gene42898:intron | 35.0% | |
| CGAATCCTATCAATAACTAG+AGG | + | chr6.4:42403229-42403248 | None:intergenic | 35.0% | |
| CTTGACTAAATGCTTGTTCA+AGG | + | chr6.4:42402520-42402539 | None:intergenic | 35.0% | |
| TATTGCCAACAGGATTTGAA+GGG | + | chr6.4:42402586-42402605 | None:intergenic | 35.0% | |
| TTATTATCCAGGGTAATCGA+CGG | - | chr6.4:42402160-42402179 | MS.gene42898:CDS | 35.0% | |
| TTCCGATAAACGATTCATTC+AGG | - | chr6.4:42402922-42402941 | MS.gene42898:intron | 35.0% | |
| TTTAGTCAAGCAAGAAAACG+AGG | - | chr6.4:42402530-42402549 | MS.gene42898:CDS | 35.0% | |
| ! | CAATCGAAAGGTCTTTTGAT+AGG | + | chr6.4:42402784-42402803 | None:intergenic | 35.0% |
| ! | GTGGATTGTTTAACCAAACT+AGG | - | chr6.4:42402995-42403014 | MS.gene42898:intron | 35.0% |
| !! | AGAAGACTGAAAAGCATTTC+TGG | + | chr6.4:42402617-42402636 | None:intergenic | 35.0% |
| ACAGGTATTAAGTCTATCCC+TGG | + | chr6.4:42402455-42402474 | None:intergenic | 40.0% | |
| ACCCTGGATAATAAGGTGTA+GGG | + | chr6.4:42402154-42402173 | None:intergenic | 40.0% | |
| AGCACACTTGATTCCTAGTT+TGG | + | chr6.4:42403011-42403030 | None:intergenic | 40.0% | |
| AGTTCTCCTTTCTCGCTATA+AGG | + | chr6.4:42403085-42403104 | None:intergenic | 40.0% | |
| ATCAGACCTTATAGCGAGAA+AGG | - | chr6.4:42403076-42403095 | MS.gene42898:intron | 40.0% | |
| CTCTAAATCCAGCAATCGAA+AGG | + | chr6.4:42402796-42402815 | None:intergenic | 40.0% | |
| GAAGTAACTAACCTCTGTGT+TGG | + | chr6.4:42402896-42402915 | None:intergenic | 40.0% | |
| GATAATAAGGTGTAGGGACA+AGG | + | chr6.4:42402148-42402167 | None:intergenic | 40.0% | |
| GTCGATTACCCTGGATAATA+AGG | + | chr6.4:42402161-42402180 | None:intergenic | 40.0% | |
| TACCCTGGATAATAAGGTGT+AGG | + | chr6.4:42402155-42402174 | None:intergenic | 40.0% | |
| TCAAAAGACCTTTCGATTGC+TGG | - | chr6.4:42402785-42402804 | MS.gene42898:CDS | 40.0% | |
| TCCCTACACCTTATTATCCA+GGG | - | chr6.4:42402150-42402169 | MS.gene42898:CDS | 40.0% | |
| TGAGATACTATCGTTCTGCT+TGG | - | chr6.4:42402103-42402122 | MS.gene42898:CDS | 40.0% | |
| ! | AGTGATTATGCAGCTTTGAC+AGG | - | chr6.4:42402414-42402433 | MS.gene42898:CDS | 40.0% |
| ! | ATTGCTGACGAAGTATTTGC+AGG | - | chr6.4:42402668-42402687 | MS.gene42898:CDS | 40.0% |
| ! | CCGTCTTATTCTATTTCGGT+TGG | + | chr6.4:42402960-42402979 | None:intergenic | 40.0% |
| ! | GCACCCGTCTTATTCTATTT+CGG | + | chr6.4:42402964-42402983 | None:intergenic | 40.0% |
| ! | GTGATTATGCAGCTTTGACA+GGG | - | chr6.4:42402415-42402434 | MS.gene42898:CDS | 40.0% |
| ! | TCGATTGCTGGATTTAGAGT+CGG | - | chr6.4:42402797-42402816 | MS.gene42898:CDS | 40.0% |
| AAACGAGGAGTCAAAGTTCG+CGG | - | chr6.4:42402545-42402564 | MS.gene42898:CDS | 45.0% | |
| AGCCGCGTTCATATAGTGTA+CGG | - | chr6.4:42402758-42402777 | MS.gene42898:CDS | 45.0% | |
| ATCAGCCCAACAGAACATAC+CGG | + | chr6.4:42403044-42403063 | None:intergenic | 45.0% | |
| CTATATCTGCACCAACACAG+AGG | - | chr6.4:42402882-42402901 | MS.gene42898:intron | 45.0% | |
| GGACAAGGAATGCATTTCCA+TGG | + | chr6.4:42402133-42402152 | None:intergenic | 45.0% | |
| GGTGTCAGAATATTGCCAAC+AGG | + | chr6.4:42402596-42402615 | None:intergenic | 45.0% | |
| GTCCCTACACCTTATTATCC+AGG | - | chr6.4:42402149-42402168 | MS.gene42898:CDS | 45.0% | |
| TCAGTACTTCGACAGTGAAC+AGG | + | chr6.4:42402473-42402492 | None:intergenic | 45.0% | |
| TCGAACCCTTCAAATCCTGT+TGG | - | chr6.4:42402578-42402597 | MS.gene42898:CDS | 45.0% | |
| TTCTGTTGGGCTGATATGAG+TGG | - | chr6.4:42403049-42403068 | MS.gene42898:intron | 45.0% | |
| !! | ACCATCCTGGTTCTATGCAA+TGG | + | chr6.4:42403168-42403187 | None:intergenic | 45.0% |
| !! | TAAAAATATCTTAATTAAAA+AGG | - | chr6.4:42402277-42402296 | MS.gene42898:CDS | 5.0% |
| ACGGGTGCACAATGAGTTTG+TGG | - | chr6.4:42402976-42402995 | MS.gene42898:intron | 50.0% | |
| GCCATTGCATAGAACCAGGA+TGG | - | chr6.4:42403164-42403183 | MS.gene42898:CDS | 50.0% | |
| GCTTGCCATTGCATAGAACC+AGG | - | chr6.4:42403160-42403179 | MS.gene42898:CDS | 50.0% | |
| GCTTTGACAGGGACGTAAGA+TGG | - | chr6.4:42402426-42402445 | MS.gene42898:CDS | 50.0% | |
| GGCCGTACACTATATGAACG+CGG | + | chr6.4:42402763-42402782 | None:intergenic | 50.0% | |
| GTATTTGCAGGCTCCACGTA+CGG | - | chr6.4:42402680-42402699 | MS.gene42898:CDS | 50.0% | |
| AAACTCCTCGCTTCCGTACG+TGG | + | chr6.4:42402696-42402715 | None:intergenic | 55.0% | |
| AAGTGTGCTAAGAGCAGCGC+CGG | - | chr6.4:42403022-42403041 | MS.gene42898:intron | 55.0% | |
| ATGCAATGGCAAGCCGATCC+AGG | + | chr6.4:42403154-42403173 | None:intergenic | 55.0% | |
| TCGTTCTGCTTGGCAGACCA+TGG | - | chr6.4:42402113-42402132 | MS.gene42898:CDS | 55.0% | |
| !! | CAGCGCCGGTATGTTCTGTT+GGG | - | chr6.4:42403036-42403055 | MS.gene42898:intron | 55.0% |
| !! | GAAAGTGCCGTCGATTACCC+TGG | + | chr6.4:42402170-42402189 | None:intergenic | 55.0% |
| AGGGACGTAAGATGGCGTCC+AGG | - | chr6.4:42402434-42402453 | MS.gene42898:CDS | 60.0% | |
| GGGACGTAAGATGGCGTCCA+GGG | - | chr6.4:42402435-42402454 | MS.gene42898:CDS | 60.0% | |
| !! | GCAGCGCCGGTATGTTCTGT+TGG | - | chr6.4:42403035-42403054 | MS.gene42898:intron | 60.0% |
| AGGCTCCACGTACGGAAGCG+AGG | - | chr6.4:42402688-42402707 | MS.gene42898:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 42402026 | 42403265 | 42402026 | ID=MS.gene42898 |
| chr6.4 | mRNA | 42402026 | 42403265 | 42402026 | ID=MS.gene42898.t1;Parent=MS.gene42898 |
| chr6.4 | exon | 42403120 | 42403265 | 42403120 | ID=MS.gene42898.t1.exon1;Parent=MS.gene42898.t1 |
| chr6.4 | CDS | 42403120 | 42403265 | 42403120 | ID=cds.MS.gene42898.t1;Parent=MS.gene42898.t1 |
| chr6.4 | exon | 42402026 | 42402864 | 42402026 | ID=MS.gene42898.t1.exon2;Parent=MS.gene42898.t1 |
| chr6.4 | CDS | 42402026 | 42402864 | 42402026 | ID=cds.MS.gene42898.t1;Parent=MS.gene42898.t1 |
| Gene Sequence |
| Protein sequence |
