Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89714.t1 | XP_013447110.1 | 97.7 | 487 | 11 | 0 | 1 | 487 | 1 | 487 | 3.20E-282 | 980.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89714.t1 | P31531 | 83.5 | 486 | 77 | 2 | 1 | 486 | 1 | 483 | 2.0e-245 | 849.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89714.t1 | A0A072TUM5 | 97.7 | 487 | 11 | 0 | 1 | 487 | 1 | 487 | 2.3e-282 | 980.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene06009 | MS.gene89714 | 0.898222 | 6.56E-77 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene89714 | MS.gene42900 | PPI |
| MS.gene89714 | MS.gene42898 | PPI |
| MS.gene055893 | MS.gene89714 | PPI |
| MS.gene89714 | MS.gene42899 | PPI |
| MS.gene89714 | MS.gene055892 | PPI |
| MS.gene89714 | MS.gene33218 | PPI |
| MS.gene89714 | MS.gene81187 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89714.t1 | MTR_8g098930 | 97.741 | 487 | 11 | 0 | 1 | 487 | 1 | 487 | 0.0 | 1002 |
| MS.gene89714.t1 | MTR_7g079080 | 65.580 | 491 | 157 | 4 | 1 | 486 | 1 | 484 | 0.0 | 671 |
| MS.gene89714.t1 | MTR_8g028600 | 64.583 | 480 | 159 | 3 | 10 | 486 | 9 | 480 | 0.0 | 666 |
| MS.gene89714.t1 | MTR_4g097540 | 54.788 | 449 | 195 | 3 | 10 | 450 | 2 | 450 | 0.0 | 541 |
| MS.gene89714.t1 | MTR_3g103550 | 53.348 | 448 | 200 | 4 | 11 | 451 | 1 | 446 | 0.0 | 526 |
| MS.gene89714.t1 | MTR_5g015020 | 54.503 | 433 | 191 | 4 | 10 | 436 | 2 | 434 | 0.0 | 524 |
| MS.gene89714.t1 | MTR_8g101750 | 56.132 | 424 | 177 | 2 | 12 | 435 | 12 | 426 | 0.0 | 515 |
| MS.gene89714.t1 | MTR_6g091760 | 55.079 | 443 | 192 | 5 | 1 | 441 | 1 | 438 | 0.0 | 514 |
| MS.gene89714.t1 | MTR_7g079080 | 63.636 | 385 | 129 | 3 | 107 | 486 | 1 | 379 | 5.93e-180 | 509 |
| MS.gene89714.t1 | MTR_8g101820 | 51.869 | 428 | 178 | 4 | 12 | 436 | 12 | 414 | 4.92e-163 | 468 |
| MS.gene89714.t1 | MTR_6g463260 | 42.118 | 425 | 242 | 2 | 12 | 435 | 104 | 525 | 1.66e-133 | 397 |
| MS.gene89714.t1 | MTR_5g011400 | 40.295 | 407 | 240 | 1 | 25 | 431 | 85 | 488 | 1.91e-118 | 357 |
| MS.gene89714.t1 | MTR_2g090730 | 46.237 | 93 | 46 | 1 | 65 | 157 | 12 | 100 | 1.95e-23 | 98.2 |
| MS.gene89714.t1 | MTR_8g023140 | 22.792 | 351 | 244 | 12 | 94 | 422 | 158 | 503 | 8.78e-16 | 80.1 |
| MS.gene89714.t1 | MTR_5g033230 | 23.441 | 401 | 272 | 16 | 39 | 408 | 42 | 438 | 4.13e-15 | 77.8 |
| MS.gene89714.t1 | MTR_5g033230 | 23.441 | 401 | 272 | 16 | 39 | 408 | 42 | 438 | 4.22e-15 | 77.8 |
| MS.gene89714.t1 | MTR_4g011820 | 22.599 | 354 | 234 | 14 | 87 | 432 | 61 | 382 | 2.37e-14 | 75.1 |
| MS.gene89714.t1 | MTR_1807s0010 | 27.551 | 196 | 126 | 6 | 95 | 289 | 69 | 249 | 3.41e-13 | 71.6 |
| MS.gene89714.t1 | MTR_2g090615 | 23.529 | 374 | 228 | 16 | 89 | 438 | 77 | 416 | 9.66e-13 | 70.5 |
| MS.gene89714.t1 | MTR_8g021970 | 36.111 | 108 | 46 | 4 | 233 | 340 | 11 | 95 | 1.25e-12 | 64.3 |
| MS.gene89714.t1 | MTR_3g072670 | 22.670 | 397 | 247 | 15 | 46 | 422 | 86 | 442 | 3.78e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89714.t1 | AT4G11280 | 65.988 | 491 | 144 | 4 | 11 | 487 | 14 | 495 | 0.0 | 659 |
| MS.gene89714.t1 | AT3G61510 | 61.856 | 485 | 171 | 3 | 10 | 485 | 9 | 488 | 0.0 | 642 |
| MS.gene89714.t1 | AT1G01480 | 60.040 | 498 | 184 | 6 | 1 | 485 | 1 | 496 | 0.0 | 640 |
| MS.gene89714.t1 | AT4G37770 | 58.275 | 429 | 172 | 3 | 11 | 435 | 3 | 428 | 0.0 | 548 |
| MS.gene89714.t1 | AT2G22810 | 55.349 | 430 | 190 | 2 | 12 | 439 | 4 | 433 | 0.0 | 516 |
| MS.gene89714.t1 | AT3G49700 | 53.776 | 437 | 199 | 2 | 12 | 446 | 4 | 439 | 2.80e-179 | 511 |
| MS.gene89714.t1 | AT4G08040 | 53.613 | 429 | 197 | 2 | 11 | 439 | 1 | 427 | 3.38e-179 | 510 |
| MS.gene89714.t1 | AT5G65800 | 53.899 | 436 | 198 | 2 | 12 | 445 | 4 | 438 | 4.43e-179 | 510 |
| MS.gene89714.t1 | AT4G26200 | 56.000 | 425 | 185 | 2 | 12 | 435 | 18 | 441 | 3.95e-177 | 504 |
| MS.gene89714.t1 | AT1G01480 | 57.908 | 392 | 150 | 6 | 107 | 485 | 1 | 390 | 4.47e-167 | 477 |
| MS.gene89714.t1 | AT5G51690 | 42.579 | 411 | 232 | 2 | 25 | 434 | 82 | 489 | 2.31e-124 | 372 |
| MS.gene89714.t1 | AT1G62960 | 42.615 | 413 | 227 | 6 | 22 | 432 | 143 | 547 | 9.99e-124 | 372 |
| MS.gene89714.t1 | AT5G51690 | 43.785 | 354 | 196 | 1 | 79 | 432 | 14 | 364 | 6.74e-113 | 338 |
| MS.gene89714.t1 | AT2G22250 | 24.800 | 375 | 228 | 16 | 80 | 432 | 74 | 416 | 1.06e-19 | 91.7 |
| MS.gene89714.t1 | AT2G22250 | 24.800 | 375 | 228 | 16 | 80 | 432 | 121 | 463 | 1.33e-19 | 91.7 |
| MS.gene89714.t1 | AT2G22250 | 24.800 | 375 | 228 | 16 | 80 | 432 | 121 | 463 | 1.33e-19 | 91.7 |
| MS.gene89714.t1 | AT1G23310 | 24.713 | 348 | 227 | 15 | 87 | 408 | 100 | 438 | 5.71e-17 | 83.6 |
| MS.gene89714.t1 | AT1G23310 | 24.713 | 348 | 227 | 15 | 87 | 408 | 100 | 438 | 7.50e-17 | 83.6 |
| MS.gene89714.t1 | AT1G17290 | 25.606 | 289 | 197 | 10 | 94 | 368 | 177 | 461 | 9.37e-17 | 83.2 |
| MS.gene89714.t1 | AT1G70580 | 24.234 | 359 | 243 | 15 | 39 | 372 | 42 | 396 | 1.71e-16 | 82.4 |
| MS.gene89714.t1 | AT1G70580 | 24.234 | 359 | 243 | 15 | 39 | 372 | 42 | 396 | 1.71e-16 | 82.4 |
| MS.gene89714.t1 | AT1G70580 | 24.234 | 359 | 243 | 15 | 39 | 372 | 42 | 396 | 1.71e-16 | 82.4 |
| MS.gene89714.t1 | AT1G70580 | 24.234 | 359 | 243 | 15 | 39 | 372 | 42 | 396 | 1.71e-16 | 82.4 |
| MS.gene89714.t1 | AT1G72330 | 23.014 | 365 | 249 | 13 | 94 | 434 | 174 | 530 | 1.03e-15 | 80.1 |
| MS.gene89714.t1 | AT5G36160 | 22.678 | 366 | 242 | 13 | 89 | 440 | 79 | 417 | 2.59e-14 | 75.1 |
| MS.gene89714.t1 | AT1G72330 | 21.990 | 382 | 253 | 13 | 90 | 434 | 170 | 543 | 5.62e-14 | 74.7 |
| MS.gene89714.t1 | AT1G72330 | 26.033 | 242 | 164 | 8 | 90 | 323 | 170 | 404 | 7.48e-13 | 70.9 |
| MS.gene89714.t1 | AT1G77670 | 22.980 | 396 | 255 | 15 | 59 | 432 | 66 | 433 | 1.21e-11 | 67.0 |
| MS.gene89714.t1 | AT4G23600 | 23.513 | 353 | 231 | 17 | 95 | 434 | 78 | 404 | 2.11e-11 | 66.2 |
| MS.gene89714.t1 | AT5G53970 | 22.335 | 394 | 260 | 15 | 68 | 440 | 40 | 408 | 9.65e-11 | 63.9 |
Find 92 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTACTGATTTGGTTCAAAAT+TGG | 0.180902 | 4.4:+5244520 | MS.gene89714:CDS |
| CGTATATTTCATCGCTTATT+AGG | 0.237518 | 4.4:-5245778 | None:intergenic |
| AGAGTACAAATTGAGGCTTC+TGG | 0.284872 | 4.4:-5244555 | None:intergenic |
| TTTGCACTTTCGCAGATAAC+TGG | 0.298899 | 4.4:-5245584 | None:intergenic |
| AGAGATTTGAGGTGGAGAAC+AGG | 0.302380 | 4.4:+5245548 | MS.gene89714:CDS |
| TTTCCAGCTTACTACTGATT+TGG | 0.334888 | 4.4:+5244509 | MS.gene89714:intron |
| GCGCGCAAAATGTCGAGTTT+TGG | 0.341792 | 4.4:+5245980 | MS.gene89714:CDS |
| AGCTACATTTGAATCAGAAT+TGG | 0.358107 | 4.4:+5246207 | MS.gene89714:CDS |
| ATTTGTGGTTCAGAATAATA+AGG | 0.368943 | 4.4:+5246375 | MS.gene89714:CDS |
| TCCTCATGGTGTTATCCAAA+TGG | 0.374967 | 4.4:+5244355 | MS.gene89714:CDS |
| AGTACATAATTTCAAAGAAA+TGG | 0.381772 | 4.4:+5244584 | MS.gene89714:CDS |
| TCAGAATAATAAGGAGGTTA+TGG | 0.384538 | 4.4:+5246384 | MS.gene89714:CDS |
| AACACAGACACAATACTTGA+TGG | 0.385707 | 4.4:+5246012 | MS.gene89714:CDS |
| GCCTCAATTTGTACTCTAGA+AGG | 0.386175 | 4.4:+5244561 | MS.gene89714:CDS |
| ACAAGAGGTGACTGAGGAAA+TGG | 0.387130 | 4.4:-5246502 | None:intergenic |
| TCAGCTATGCTTATGAAACT+TGG | 0.389874 | 4.4:-5245821 | None:intergenic |
| TAAACAATTAATTCCAACTT+TGG | 0.390119 | 4.4:-5246131 | None:intergenic |
| TCATTTCATTGTTCTGAGCC+AGG | 0.391963 | 4.4:+5246283 | MS.gene89714:CDS |
| ACTAGTGGATTAACCAAAGT+TGG | 0.392203 | 4.4:+5246118 | MS.gene89714:CDS |
| GAGTACAAATTGAGGCTTCT+GGG | 0.396801 | 4.4:-5244554 | None:intergenic |
| GAAACATCATCTTACTTTGA+TGG | 0.397210 | 4.4:+5244290 | MS.gene89714:CDS |
| AATGGGTCTTGCAGAGAATC+AGG | 0.399230 | 4.4:+5244373 | MS.gene89714:CDS |
| GATTCTCTGCAAGACCCATT+TGG | 0.400674 | 4.4:-5244370 | None:intergenic |
| GGATTTGAGAGGACTTCTTA+AGG | 0.406992 | 4.4:+5246183 | MS.gene89714:CDS |
| GTGCCTACTCCTTACTGTCC+AGG | 0.413468 | 4.4:+5244877 | MS.gene89714:CDS |
| TTGAATCAGAATTGGAACTT+TGG | 0.414840 | 4.4:+5246215 | MS.gene89714:CDS |
| CAACGGTTCTTAATGTGCTT+CGG | 0.416784 | 4.4:-5245727 | None:intergenic |
| CGGTCCATAACTGTGCCTAA+TGG | 0.421374 | 4.4:-5245707 | None:intergenic |
| GTCATGAGTGGTGGAGCAAC+TGG | 0.428446 | 4.4:+5244802 | MS.gene89714:CDS |
| AACTGTGCCTAATGGATTTG+AGG | 0.440159 | 4.4:-5245699 | None:intergenic |
| CTTGCTGGCATAGTAATTTG+AGG | 0.441796 | 4.4:+5246428 | MS.gene89714:CDS |
| ACAAAGGATTAGATCATTTG+TGG | 0.445312 | 4.4:+5246360 | MS.gene89714:CDS |
| ATTAATTGTTTACAAAGTAA+TGG | 0.455659 | 4.4:+5246142 | MS.gene89714:CDS |
| AAATCCATTAGGCACAGTTA+TGG | 0.479153 | 4.4:+5245703 | MS.gene89714:CDS |
| TCAAAAGACATGGGATTCCC+TGG | 0.480186 | 4.4:+5245908 | MS.gene89714:CDS |
| ACTGTGCCTAATGGATTTGA+GGG | 0.481893 | 4.4:-5245698 | None:intergenic |
| CATCATCTTACTTTGATGGA+TGG | 0.487153 | 4.4:+5244294 | MS.gene89714:CDS |
| CCTCATGGTGTTATCCAAAT+GGG | 0.487603 | 4.4:+5244356 | MS.gene89714:CDS |
| GATTCTGATGTTATCTTCTG+TGG | 0.488021 | 4.4:-5245654 | None:intergenic |
| AGAAGAACACTAAACCTTGC+TGG | 0.489355 | 4.4:+5246413 | MS.gene89714:CDS |
| CAGCTATGCTTATGAAACTT+GGG | 0.490646 | 4.4:-5245820 | None:intergenic |
| GCAGATTTGATAGAGATTTG+AGG | 0.492142 | 4.4:+5245537 | MS.gene89714:intron |
| CATTTCATTGTTCTGAGCCA+GGG | 0.492750 | 4.4:+5246284 | MS.gene89714:CDS |
| ACCAGGATCTGCCAAACAAA+AGG | 0.493747 | 4.4:-5244842 | None:intergenic |
| AAACTATGTGAACGAGGTTA+CGG | 0.508352 | 4.4:-5245877 | None:intergenic |
| GGTTAAGCCTTAAAACAAGA+AGG | 0.509933 | 4.4:+5246449 | MS.gene89714:CDS |
| TGTACATACCCTGGACAGTA+AGG | 0.513844 | 4.4:-5244886 | None:intergenic |
| TCTTAGACAACAATTGAGGT+TGG | 0.527263 | 4.4:-5244244 | None:intergenic |
| ACAAATCCCTCAAATCCATT+AGG | 0.528896 | 4.4:+5245692 | MS.gene89714:CDS |
| TTCATTGATGAAATTTGCAA+CGG | 0.530715 | 4.4:-5245744 | None:intergenic |
| TGCCTACTCCTTACTGTCCA+GGG | 0.540867 | 4.4:+5244878 | MS.gene89714:CDS |
| GCTATCTTAGACAACAATTG+AGG | 0.540964 | 4.4:-5244248 | None:intergenic |
| GAAGATAACATCAGAATCAA+AGG | 0.542170 | 4.4:+5245659 | MS.gene89714:CDS |
| TCTAAGATAGCCACTGGTGA+TGG | 0.550202 | 4.4:+5244260 | MS.gene89714:CDS |
| CCACTCACATTTCTGAACTC+TGG | 0.552742 | 4.4:-5244633 | None:intergenic |
| TCCTTCTAGAGTACAAATTG+AGG | 0.558961 | 4.4:-5244562 | None:intergenic |
| CAAGTAGTGGCTTTAACAAG+AGG | 0.562133 | 4.4:-5246517 | None:intergenic |
| ATGTGCAAATTGCTTTACAA+AGG | 0.563606 | 4.4:+5246344 | MS.gene89714:CDS |
| GATTTGATAGAGATTTGAGG+TGG | 0.566695 | 4.4:+5245540 | MS.gene89714:intron |
| CCACTCATGACAATACGATC+AGG | 0.570761 | 4.4:-5244790 | None:intergenic |
| ATCTGCCAAACAAAAGGCAG+TGG | 0.571931 | 4.4:-5244836 | None:intergenic |
| CTCAAATTACTATGCCAGCA+AGG | 0.576441 | 4.4:-5246427 | None:intergenic |
| TTGTTGTCTAAGATAGCCAC+TGG | 0.576629 | 4.4:+5244254 | MS.gene89714:CDS |
| TGGAGCAACTGGAGCACATG+AGG | 0.576944 | 4.4:+5244813 | MS.gene89714:CDS |
| GTTAAGATTAATGTTTCACC+TGG | 0.580822 | 4.4:+5246256 | MS.gene89714:CDS |
| AATTGTTTACAAAGTAATGG+TGG | 0.584470 | 4.4:+5246145 | MS.gene89714:CDS |
| TTATACCAACTCTAAAACCA+GGG | 0.584528 | 4.4:-5245925 | None:intergenic |
| TACAGTCTTTCAAAAGACAT+GGG | 0.586545 | 4.4:+5245899 | MS.gene89714:CDS |
| GACTGAGGAAATGGAGAATG+AGG | 0.586929 | 4.4:-5246493 | None:intergenic |
| AAATTCATGTCTAGAACAAG+AGG | 0.590021 | 4.4:+5244748 | MS.gene89714:CDS |
| ATGCTAAATAATTCAAGTAG+TGG | 0.595412 | 4.4:-5246530 | None:intergenic |
| TTACAGTCTTTCAAAAGACA+TGG | 0.595760 | 4.4:+5245898 | MS.gene89714:CDS |
| TAGAGTGTGTTATGCTAACA+TGG | 0.616578 | 4.4:+5246312 | MS.gene89714:CDS |
| ATTATACCAACTCTAAAACC+AGG | 0.620538 | 4.4:-5245926 | None:intergenic |
| TTCTTGCTGAAAGTGCAAAG+AGG | 0.621704 | 4.4:+5246071 | MS.gene89714:CDS |
| TTCATTGTTCTGAGCCAGGG+TGG | 0.625682 | 4.4:+5246287 | MS.gene89714:CDS |
| GATCGTATTGTCATGAGTGG+TGG | 0.626364 | 4.4:+5244793 | MS.gene89714:CDS |
| CGATGAAATATACGCTGCAA+CGG | 0.630366 | 4.4:+5245787 | MS.gene89714:CDS |
| TGTGGTTCAGAATAATAAGG+AGG | 0.634977 | 4.4:+5246378 | MS.gene89714:CDS |
| GTGCAAAGAGGTTAGCACAA+AGG | 0.640437 | 4.4:+5246083 | MS.gene89714:CDS |
| TACCCTGGACAGTAAGGAGT+AGG | 0.661817 | 4.4:-5244880 | None:intergenic |
| CCTGATCGTATTGTCATGAG+TGG | 0.663504 | 4.4:+5244790 | MS.gene89714:CDS |
| GAACAATGAAATGAAACACC+AGG | 0.667249 | 4.4:-5246274 | None:intergenic |
| CTATGCTTATGAAACTTGGG+TGG | 0.667408 | 4.4:-5245817 | None:intergenic |
| TTCACCATGTCCATCACCAG+TGG | 0.671313 | 4.4:-5244270 | None:intergenic |
| GACTGTAAACTATGTGAACG+AGG | 0.673179 | 4.4:-5245883 | None:intergenic |
| TTTGTGTGGATGGATTTGAG+AGG | 0.680530 | 4.4:+5246172 | MS.gene89714:CDS |
| TTTGCGCGCACAATTTACAA+CGG | 0.684836 | 4.4:-5245966 | None:intergenic |
| ATAGCCACTGGTGATGGACA+TGG | 0.685257 | 4.4:+5244266 | MS.gene89714:CDS |
| CCCATTTGGATAACACCATG+AGG | 0.688522 | 4.4:-5244356 | None:intergenic |
| GCTTTAACAAGAGGTGACTG+AGG | 0.694413 | 4.4:-5246508 | None:intergenic |
| TAACACACTCTAAACCACCC+TGG | 0.698750 | 4.4:-5246301 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCTTCTAAATTAAAATTAA+TGG | - | chr4.4:5244983-5245002 | None:intergenic | 10.0% |
| !! | TCTTCTAAATTAAAATTAAT+GGG | - | chr4.4:5244982-5245001 | None:intergenic | 10.0% |
| !!! | AATTTAATATGAATTTTTAC+AGG | + | chr4.4:5244717-5244736 | MS.gene89714:intron | 10.0% |
| !! | AAAAATTAAGATGAAGAAAA+GGG | - | chr4.4:5244929-5244948 | None:intergenic | 15.0% |
| !! | ATTAATTGTTTACAAAGTAA+TGG | + | chr4.4:5246142-5246161 | MS.gene89714:CDS | 15.0% |
| !! | GAATATTAAAGTAATAACTA+AGG | - | chr4.4:5245234-5245253 | None:intergenic | 15.0% |
| !! | AAAATAAATAATTGCTCTGA+TGG | - | chr4.4:5245378-5245397 | None:intergenic | 20.0% |
| !! | AAAATTAAGATGAAGAAAAG+GGG | - | chr4.4:5244928-5244947 | None:intergenic | 20.0% |
| !! | AGTACATAATTTCAAAGAAA+TGG | + | chr4.4:5244584-5244603 | MS.gene89714:CDS | 20.0% |
| !! | GAAAAATTAAGATGAAGAAA+AGG | - | chr4.4:5244930-5244949 | None:intergenic | 20.0% |
| !! | TAAACAATTAATTCCAACTT+TGG | - | chr4.4:5246134-5246153 | None:intergenic | 20.0% |
| !!! | AATGTTTTTGTTTTACTTTC+TGG | - | chr4.4:5245431-5245450 | None:intergenic | 20.0% |
| ! | AATTGTTTACAAAGTAATGG+TGG | + | chr4.4:5246145-5246164 | MS.gene89714:CDS | 25.0% |
| ! | ATGTATCTTTCTTGATCTAA+CGG | + | chr4.4:5245096-5245115 | MS.gene89714:intron | 25.0% |
| ! | ATTTGTGGTTCAGAATAATA+AGG | + | chr4.4:5246375-5246394 | MS.gene89714:CDS | 25.0% |
| ! | TAAAAATATACTGCATGGAT+AGG | - | chr4.4:5244459-5244478 | None:intergenic | 25.0% |
| ! | TAGAATGTTATATGACTATG+TGG | - | chr4.4:5245468-5245487 | None:intergenic | 25.0% |
| ! | TTCATTGATGAAATTTGCAA+CGG | - | chr4.4:5245747-5245766 | None:intergenic | 25.0% |
| !! | TTTTTCATATGCATCTTCTA+AGG | - | chr4.4:5245633-5245652 | None:intergenic | 25.0% |
| !!! | TTACTTTCTGGTTTGTATAT+AGG | - | chr4.4:5245419-5245438 | None:intergenic | 25.0% |
| ACAAAGGATTAGATCATTTG+TGG | + | chr4.4:5246360-5246379 | MS.gene89714:CDS | 30.0% | |
| AGAGCTAAAAATATACTGCA+TGG | - | chr4.4:5244464-5244483 | None:intergenic | 30.0% | |
| AGCTACATTTGAATCAGAAT+TGG | + | chr4.4:5246207-5246226 | MS.gene89714:CDS | 30.0% | |
| ATGTGCAAATTGCTTTACAA+AGG | + | chr4.4:5246344-5246363 | MS.gene89714:CDS | 30.0% | |
| CGTATATTTCATCGCTTATT+AGG | - | chr4.4:5245781-5245800 | None:intergenic | 30.0% | |
| CTGCACTATAAAACAAACTA+CGG | - | chr4.4:5245043-5245062 | None:intergenic | 30.0% | |
| GAAACATCATCTTACTTTGA+TGG | + | chr4.4:5244290-5244309 | MS.gene89714:CDS | 30.0% | |
| GAAGATAACATCAGAATCAA+AGG | + | chr4.4:5245659-5245678 | MS.gene89714:CDS | 30.0% | |
| GTTAAGATTAATGTTTCACC+TGG | + | chr4.4:5246256-5246275 | MS.gene89714:CDS | 30.0% | |
| TAATAACTAAGGCTGATTAG+TGG | - | chr4.4:5245223-5245242 | None:intergenic | 30.0% | |
| TACAGTCTTTCAAAAGACAT+GGG | + | chr4.4:5245899-5245918 | MS.gene89714:CDS | 30.0% | |
| TCAGAATAATAAGGAGGTTA+TGG | + | chr4.4:5246384-5246403 | MS.gene89714:CDS | 30.0% | |
| TTACAGTCTTTCAAAAGACA+TGG | + | chr4.4:5245898-5245917 | MS.gene89714:CDS | 30.0% | |
| TTGAATCAGAATTGGAACTT+TGG | + | chr4.4:5246215-5246234 | MS.gene89714:CDS | 30.0% | |
| ! | AAATTCATGTCTAGAACAAG+AGG | + | chr4.4:5244748-5244767 | MS.gene89714:CDS | 30.0% |
| ! | ATATGAATTTTTACAGGCTG+TGG | + | chr4.4:5244723-5244742 | MS.gene89714:intron | 30.0% |
| ! | CAAAGAAATGGCTAATTTTC+AGG | + | chr4.4:5244596-5244615 | MS.gene89714:CDS | 30.0% |
| !! | ATTATACCAACTCTAAAACC+AGG | - | chr4.4:5245929-5245948 | None:intergenic | 30.0% |
| !! | CTACTGATTTGGTTCAAAAT+TGG | + | chr4.4:5244520-5244539 | MS.gene89714:CDS | 30.0% |
| !! | GCTAATTTTCAGGATTATCA+TGG | + | chr4.4:5244606-5244625 | MS.gene89714:CDS | 30.0% |
| !! | TTATACCAACTCTAAAACCA+GGG | - | chr4.4:5245928-5245947 | None:intergenic | 30.0% |
| !!! | AGGTAAAACATTTTCAAGTG+CGG | + | chr4.4:5245152-5245171 | MS.gene89714:intron | 30.0% |
| !!! | CATCAAACCTTCTTGTTTTA+AGG | - | chr4.4:5246459-5246478 | None:intergenic | 30.0% |
| !!! | GATTTTTGGTTGGATGAAAA+GGG | - | chr4.4:5244337-5244356 | None:intergenic | 30.0% |
| AAACTATGTGAACGAGGTTA+CGG | - | chr4.4:5245880-5245899 | None:intergenic | 35.0% | |
| AAATCCATTAGGCACAGTTA+TGG | + | chr4.4:5245703-5245722 | MS.gene89714:CDS | 35.0% | |
| AACACAGACACAATACTTGA+TGG | + | chr4.4:5246012-5246031 | MS.gene89714:CDS | 35.0% | |
| ACAAATCCCTCAAATCCATT+AGG | + | chr4.4:5245692-5245711 | MS.gene89714:CDS | 35.0% | |
| CAGCTATGCTTATGAAACTT+GGG | - | chr4.4:5245823-5245842 | None:intergenic | 35.0% | |
| CAGGTATATATCAAGCTTTG+AGG | + | chr4.4:5244392-5244411 | MS.gene89714:intron | 35.0% | |
| CATCATCTTACTTTGATGGA+TGG | + | chr4.4:5244294-5244313 | MS.gene89714:CDS | 35.0% | |
| GAACAATGAAATGAAACACC+AGG | - | chr4.4:5246277-5246296 | None:intergenic | 35.0% | |
| GATTCTGATGTTATCTTCTG+TGG | - | chr4.4:5245657-5245676 | None:intergenic | 35.0% | |
| GATTTGATAGAGATTTGAGG+TGG | + | chr4.4:5245540-5245559 | MS.gene89714:intron | 35.0% | |
| GCAGATTTGATAGAGATTTG+AGG | + | chr4.4:5245537-5245556 | MS.gene89714:intron | 35.0% | |
| GCTATCTTAGACAACAATTG+AGG | - | chr4.4:5244251-5244270 | None:intergenic | 35.0% | |
| GGTTAAGCCTTAAAACAAGA+AGG | + | chr4.4:5246449-5246468 | MS.gene89714:CDS | 35.0% | |
| TAGAGTGTGTTATGCTAACA+TGG | + | chr4.4:5246312-5246331 | MS.gene89714:CDS | 35.0% | |
| TCAGCTATGCTTATGAAACT+TGG | - | chr4.4:5245824-5245843 | None:intergenic | 35.0% | |
| TCTTAGACAACAATTGAGGT+TGG | - | chr4.4:5244247-5244266 | None:intergenic | 35.0% | |
| TGAATTGAATGTACATACCC+TGG | - | chr4.4:5244898-5244917 | None:intergenic | 35.0% | |
| TGTGGTTCAGAATAATAAGG+AGG | + | chr4.4:5246378-5246397 | MS.gene89714:CDS | 35.0% | |
| ! | AGGTACAGAATTTTCACTAG+TGG | + | chr4.4:5246103-5246122 | MS.gene89714:CDS | 35.0% |
| ! | GATAACACCATGAGGATTTT+TGG | - | chr4.4:5244351-5244370 | None:intergenic | 35.0% |
| ! | TTTCCAGCTTACTACTGATT+TGG | + | chr4.4:5244509-5244528 | MS.gene89714:intron | 35.0% |
| !! | ACTAGTGGATTAACCAAAGT+TGG | + | chr4.4:5246118-5246137 | MS.gene89714:CDS | 35.0% |
| !! | TCCTTCTAGAGTACAAATTG+AGG | - | chr4.4:5244565-5244584 | None:intergenic | 35.0% |
| !!! | GGAACTGACTTTTTCAACAA+GGG | + | chr4.4:5245290-5245309 | MS.gene89714:intron | 35.0% |
| !!! | GGATTTTTGGTTGGATGAAA+AGG | - | chr4.4:5244338-5244357 | None:intergenic | 35.0% |
| !!! | TGGAACTGACTTTTTCAACA+AGG | + | chr4.4:5245289-5245308 | MS.gene89714:intron | 35.0% |
| AGAAGAACACTAAACCTTGC+TGG | + | chr4.4:5246413-5246432 | MS.gene89714:CDS | 40.0% | |
| AGAGTACAAATTGAGGCTTC+TGG | - | chr4.4:5244558-5244577 | None:intergenic | 40.0% | |
| CAACGGTTCTTAATGTGCTT+CGG | - | chr4.4:5245730-5245749 | None:intergenic | 40.0% | |
| CATCCAACCAAAAATCCTCA+TGG | + | chr4.4:5244341-5244360 | MS.gene89714:CDS | 40.0% | |
| CGATGAAATATACGCTGCAA+CGG | + | chr4.4:5245787-5245806 | MS.gene89714:CDS | 40.0% | |
| CTATGCTTATGAAACTTGGG+TGG | - | chr4.4:5245820-5245839 | None:intergenic | 40.0% | |
| CTCAAATTACTATGCCAGCA+AGG | - | chr4.4:5246430-5246449 | None:intergenic | 40.0% | |
| CTTGCTGGCATAGTAATTTG+AGG | + | chr4.4:5246428-5246447 | MS.gene89714:CDS | 40.0% | |
| GAACCAAATCAGTAGTAAGC+TGG | - | chr4.4:5244515-5244534 | None:intergenic | 40.0% | |
| GACTGTAAACTATGTGAACG+AGG | - | chr4.4:5245886-5245905 | None:intergenic | 40.0% | |
| GAGTACAAATTGAGGCTTCT+GGG | - | chr4.4:5244557-5244576 | None:intergenic | 40.0% | |
| GCCTCAATTTGTACTCTAGA+AGG | + | chr4.4:5244561-5244580 | MS.gene89714:CDS | 40.0% | |
| GGATTTGAGAGGACTTCTTA+AGG | + | chr4.4:5246183-5246202 | MS.gene89714:CDS | 40.0% | |
| GTCAGCGTAGTGAATTTAGA+TGG | + | chr4.4:5245269-5245288 | MS.gene89714:intron | 40.0% | |
| TTTATAGTGCAGTCAGCTGT+AGG | + | chr4.4:5245051-5245070 | MS.gene89714:intron | 40.0% | |
| TTTGCACTTTCGCAGATAAC+TGG | - | chr4.4:5245587-5245606 | None:intergenic | 40.0% | |
| TTTGCGCGCACAATTTACAA+CGG | - | chr4.4:5245969-5245988 | None:intergenic | 40.0% | |
| ! | CATTTCATTGTTCTGAGCCA+GGG | + | chr4.4:5246284-5246303 | MS.gene89714:CDS | 40.0% |
| ! | TCATTTCATTGTTCTGAGCC+AGG | + | chr4.4:5246283-5246302 | MS.gene89714:CDS | 40.0% |
| ! | TTCTTGCTGAAAGTGCAAAG+AGG | + | chr4.4:5246071-5246090 | MS.gene89714:CDS | 40.0% |
| ! | TTGTTGTCTAAGATAGCCAC+TGG | + | chr4.4:5244254-5244273 | MS.gene89714:CDS | 40.0% |
| ! | TTTGTGTGGATGGATTTGAG+AGG | + | chr4.4:5246172-5246191 | MS.gene89714:CDS | 40.0% |
| !! | AACTGTGCCTAATGGATTTG+AGG | - | chr4.4:5245702-5245721 | None:intergenic | 40.0% |
| !! | ACTGTGCCTAATGGATTTGA+GGG | - | chr4.4:5245701-5245720 | None:intergenic | 40.0% |
| !! | CAAGTAGTGGCTTTAACAAG+AGG | - | chr4.4:5246520-5246539 | None:intergenic | 40.0% |
| !! | CCTCATGGTGTTATCCAAAT+GGG | + | chr4.4:5244356-5244375 | MS.gene89714:CDS | 40.0% |
| !! | TCCTCATGGTGTTATCCAAA+TGG | + | chr4.4:5244355-5244374 | MS.gene89714:CDS | 40.0% |
| !!! | ACACCATGAGGATTTTTGGT+TGG | - | chr4.4:5244347-5244366 | None:intergenic | 40.0% |
| !!! | AGATCCTGGTGATGCTTTTT+TGG | + | chr4.4:5244855-5244874 | MS.gene89714:CDS | 40.0% |
| !!! | GTAATGGTGGACTTTTTGTG+TGG | + | chr4.4:5246158-5246177 | MS.gene89714:CDS | 40.0% |
| AATGGGTCTTGCAGAGAATC+AGG | + | chr4.4:5244373-5244392 | MS.gene89714:CDS | 45.0% | |
| ACAAGAGGTGACTGAGGAAA+TGG | - | chr4.4:5246505-5246524 | None:intergenic | 45.0% | |
| ACCAGGATCTGCCAAACAAA+AGG | - | chr4.4:5244845-5244864 | None:intergenic | 45.0% | |
| ATCTGCCAAACAAAAGGCAG+TGG | - | chr4.4:5244839-5244858 | None:intergenic | 45.0% | |
| CCACTCACATTTCTGAACTC+TGG | - | chr4.4:5244636-5244655 | None:intergenic | 45.0% | |
| CCACTCATGACAATACGATC+AGG | - | chr4.4:5244793-5244812 | None:intergenic | 45.0% | |
| CCAGAGTTCAGAAATGTGAG+TGG | + | chr4.4:5244633-5244652 | MS.gene89714:intron | 45.0% | |
| CCCATTTGGATAACACCATG+AGG | - | chr4.4:5244359-5244378 | None:intergenic | 45.0% | |
| CCTGATCGTATTGTCATGAG+TGG | + | chr4.4:5244790-5244809 | MS.gene89714:CDS | 45.0% | |
| GACTGAGGAAATGGAGAATG+AGG | - | chr4.4:5246496-5246515 | None:intergenic | 45.0% | |
| GATCGTATTGTCATGAGTGG+TGG | + | chr4.4:5244793-5244812 | MS.gene89714:CDS | 45.0% | |
| GATTCTCTGCAAGACCCATT+TGG | - | chr4.4:5244373-5244392 | None:intergenic | 45.0% | |
| GCTTTAACAAGAGGTGACTG+AGG | - | chr4.4:5246511-5246530 | None:intergenic | 45.0% | |
| GTGCAAAGAGGTTAGCACAA+AGG | + | chr4.4:5246083-5246102 | MS.gene89714:CDS | 45.0% | |
| TAACACACTCTAAACCACCC+TGG | - | chr4.4:5246304-5246323 | None:intergenic | 45.0% | |
| TCAAAAGACATGGGATTCCC+TGG | + | chr4.4:5245908-5245927 | MS.gene89714:CDS | 45.0% | |
| TCACTGCACTGGAAAGTAAG+CGG | + | chr4.4:5245128-5245147 | MS.gene89714:intron | 45.0% | |
| TGTACATACCCTGGACAGTA+AGG | - | chr4.4:5244889-5244908 | None:intergenic | 45.0% | |
| ! | AGAGATTTGAGGTGGAGAAC+AGG | + | chr4.4:5245548-5245567 | MS.gene89714:CDS | 45.0% |
| ! | TCTAAGATAGCCACTGGTGA+TGG | + | chr4.4:5244260-5244279 | MS.gene89714:CDS | 45.0% |
| !! | CGCTGACTTCTAATGATGAC+TGG | - | chr4.4:5245256-5245275 | None:intergenic | 45.0% |
| !!! | GGATTCCCTGGTTTTAGAGT+TGG | + | chr4.4:5245920-5245939 | MS.gene89714:CDS | 45.0% |
| !!! | TGGTGGACTTTTTGTGTGGA+TGG | + | chr4.4:5246162-5246181 | MS.gene89714:CDS | 45.0% |
| !!! | ATAATTGATAATATTATAAT+TGG | - | chr4.4:5244952-5244971 | None:intergenic | 5.0% |
| CGGTCCATAACTGTGCCTAA+TGG | - | chr4.4:5245710-5245729 | None:intergenic | 50.0% | |
| TACCCTGGACAGTAAGGAGT+AGG | - | chr4.4:5244883-5244902 | None:intergenic | 50.0% | |
| TGCCTACTCCTTACTGTCCA+GGG | + | chr4.4:5244878-5244897 | MS.gene89714:CDS | 50.0% | |
| TTCACCATGTCCATCACCAG+TGG | - | chr4.4:5244273-5244292 | None:intergenic | 50.0% | |
| ! | GCGCGCAAAATGTCGAGTTT+TGG | + | chr4.4:5245980-5245999 | MS.gene89714:CDS | 50.0% |
| ! | TGAGGCCACTGCCTTTTGTT+TGG | + | chr4.4:5244831-5244850 | MS.gene89714:CDS | 50.0% |
| ! | TTCATTGTTCTGAGCCAGGG+TGG | + | chr4.4:5246287-5246306 | MS.gene89714:CDS | 50.0% |
| !! | ATAGCCACTGGTGATGGACA+TGG | + | chr4.4:5244266-5244285 | MS.gene89714:CDS | 50.0% |
| !! | GCCTTTTGTTTGGCAGATCC+TGG | + | chr4.4:5244841-5244860 | MS.gene89714:CDS | 50.0% |
| !! | GGCACCAAAAAAGCATCACC+AGG | - | chr4.4:5244862-5244881 | None:intergenic | 50.0% |
| GTGCCTACTCCTTACTGTCC+AGG | + | chr4.4:5244877-5244896 | MS.gene89714:CDS | 55.0% | |
| TGCACTGGAAAGTAAGCGGC+AGG | + | chr4.4:5245132-5245151 | MS.gene89714:intron | 55.0% | |
| TGGAGCAACTGGAGCACATG+AGG | + | chr4.4:5244813-5244832 | MS.gene89714:CDS | 55.0% | |
| ! | GTCATGAGTGGTGGAGCAAC+TGG | + | chr4.4:5244802-5244821 | MS.gene89714:CDS | 55.0% |
| GGACTTGCAGCTCACTGCAC+TGG | + | chr4.4:5245117-5245136 | MS.gene89714:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 5244224 | 5246540 | 5244224 | ID=MS.gene89714 |
| chr4.4 | mRNA | 5244224 | 5246540 | 5244224 | ID=MS.gene89714.t1;Parent=MS.gene89714 |
| chr4.4 | exon | 5244224 | 5244394 | 5244224 | ID=MS.gene89714.t1.exon1;Parent=MS.gene89714.t1 |
| chr4.4 | CDS | 5244224 | 5244394 | 5244224 | ID=cds.MS.gene89714.t1;Parent=MS.gene89714.t1 |
| chr4.4 | exon | 5244516 | 5244647 | 5244516 | ID=MS.gene89714.t1.exon2;Parent=MS.gene89714.t1 |
| chr4.4 | CDS | 5244516 | 5244647 | 5244516 | ID=cds.MS.gene89714.t1;Parent=MS.gene89714.t1 |
| chr4.4 | exon | 5244739 | 5244899 | 5244739 | ID=MS.gene89714.t1.exon3;Parent=MS.gene89714.t1 |
| chr4.4 | CDS | 5244739 | 5244899 | 5244739 | ID=cds.MS.gene89714.t1;Parent=MS.gene89714.t1 |
| chr4.4 | exon | 5245541 | 5246540 | 5245541 | ID=MS.gene89714.t1.exon4;Parent=MS.gene89714.t1 |
| chr4.4 | CDS | 5245541 | 5246540 | 5245541 | ID=cds.MS.gene89714.t1;Parent=MS.gene89714.t1 |
| Gene Sequence |
| Protein sequence |
