Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06009.t1 | XP_013447110.1 | 97.7 | 487 | 11 | 0 | 1 | 487 | 1 | 487 | 3.20E-282 | 980.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06009.t1 | P31531 | 83.1 | 486 | 79 | 2 | 1 | 486 | 1 | 483 | 1.3e-244 | 846.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06009.t1 | A0A072TUM5 | 97.7 | 487 | 11 | 0 | 1 | 487 | 1 | 487 | 2.3e-282 | 980.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene06009 | MS.gene44698 | 0.805547 | 1.27E-49 | -1.69E-46 |
| MS.gene06009 | MS.gene55742 | 0.997117 | 3.68E-237 | -1.69E-46 |
| MS.gene06009 | MS.gene89714 | 0.898222 | 6.56E-77 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene06009 | MS.gene81187 | PPI |
| MS.gene06009 | MS.gene42900 | PPI |
| MS.gene06009 | MS.gene42898 | PPI |
| MS.gene06009 | MS.gene42899 | PPI |
| MS.gene06009 | MS.gene055892 | PPI |
| MS.gene06009 | MS.gene33218 | PPI |
| MS.gene06009 | MS.gene055893 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06009.t1 | MTR_8g098930 | 97.741 | 487 | 11 | 0 | 1 | 487 | 1 | 487 | 0.0 | 1002 |
| MS.gene06009.t1 | MTR_7g079080 | 65.377 | 491 | 158 | 4 | 1 | 486 | 1 | 484 | 0.0 | 669 |
| MS.gene06009.t1 | MTR_8g028600 | 64.792 | 480 | 158 | 3 | 10 | 486 | 9 | 480 | 0.0 | 669 |
| MS.gene06009.t1 | MTR_4g097540 | 55.011 | 449 | 194 | 3 | 10 | 450 | 2 | 450 | 0.0 | 543 |
| MS.gene06009.t1 | MTR_3g103550 | 53.571 | 448 | 199 | 4 | 11 | 451 | 1 | 446 | 0.0 | 528 |
| MS.gene06009.t1 | MTR_5g015020 | 54.503 | 433 | 191 | 4 | 10 | 436 | 2 | 434 | 0.0 | 526 |
| MS.gene06009.t1 | MTR_8g101750 | 56.368 | 424 | 176 | 2 | 12 | 435 | 12 | 426 | 0.0 | 521 |
| MS.gene06009.t1 | MTR_6g091760 | 54.853 | 443 | 193 | 5 | 1 | 441 | 1 | 438 | 0.0 | 515 |
| MS.gene06009.t1 | MTR_7g079080 | 63.636 | 385 | 129 | 3 | 107 | 486 | 1 | 379 | 1.23e-180 | 511 |
| MS.gene06009.t1 | MTR_8g101820 | 52.103 | 428 | 177 | 4 | 12 | 436 | 12 | 414 | 3.03e-165 | 473 |
| MS.gene06009.t1 | MTR_6g463260 | 41.882 | 425 | 243 | 2 | 12 | 435 | 104 | 525 | 1.38e-133 | 397 |
| MS.gene06009.t1 | MTR_5g011400 | 40.049 | 407 | 241 | 1 | 25 | 431 | 85 | 488 | 4.48e-118 | 356 |
| MS.gene06009.t1 | MTR_2g090730 | 47.312 | 93 | 45 | 1 | 65 | 157 | 12 | 100 | 7.61e-25 | 102 |
| MS.gene06009.t1 | MTR_8g023140 | 23.647 | 351 | 241 | 12 | 94 | 422 | 158 | 503 | 8.49e-18 | 86.7 |
| MS.gene06009.t1 | MTR_5g033230 | 24.781 | 343 | 233 | 13 | 87 | 408 | 100 | 438 | 2.77e-16 | 81.6 |
| MS.gene06009.t1 | MTR_5g033230 | 24.781 | 343 | 233 | 13 | 87 | 408 | 100 | 438 | 3.17e-16 | 81.3 |
| MS.gene06009.t1 | MTR_7g106830 | 21.972 | 355 | 240 | 14 | 95 | 436 | 135 | 465 | 4.82e-16 | 80.9 |
| MS.gene06009.t1 | MTR_4g011820 | 22.599 | 354 | 234 | 14 | 87 | 432 | 61 | 382 | 5.40e-15 | 77.0 |
| MS.gene06009.t1 | MTR_2g090615 | 24.000 | 375 | 225 | 16 | 89 | 438 | 77 | 416 | 1.26e-13 | 73.2 |
| MS.gene06009.t1 | MTR_1807s0010 | 27.041 | 196 | 127 | 6 | 95 | 289 | 69 | 249 | 3.90e-13 | 71.2 |
| MS.gene06009.t1 | MTR_8g021970 | 37.037 | 108 | 45 | 4 | 233 | 340 | 11 | 95 | 4.85e-13 | 65.5 |
| MS.gene06009.t1 | MTR_3g072670 | 22.701 | 348 | 222 | 12 | 94 | 422 | 123 | 442 | 1.63e-11 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06009.t1 | AT4G11280 | 65.988 | 491 | 144 | 4 | 11 | 487 | 14 | 495 | 0.0 | 659 |
| MS.gene06009.t1 | AT3G61510 | 61.856 | 485 | 171 | 3 | 10 | 485 | 9 | 488 | 0.0 | 642 |
| MS.gene06009.t1 | AT1G01480 | 59.639 | 498 | 186 | 6 | 1 | 485 | 1 | 496 | 0.0 | 634 |
| MS.gene06009.t1 | AT4G37770 | 58.508 | 429 | 171 | 3 | 11 | 435 | 3 | 428 | 0.0 | 552 |
| MS.gene06009.t1 | AT2G22810 | 55.349 | 430 | 190 | 2 | 12 | 439 | 4 | 433 | 0.0 | 516 |
| MS.gene06009.t1 | AT4G08040 | 53.846 | 429 | 196 | 2 | 11 | 439 | 1 | 427 | 0.0 | 516 |
| MS.gene06009.t1 | AT5G65800 | 54.128 | 436 | 197 | 2 | 12 | 445 | 4 | 438 | 6.21e-180 | 513 |
| MS.gene06009.t1 | AT3G49700 | 54.005 | 437 | 198 | 2 | 12 | 446 | 4 | 439 | 7.65e-180 | 512 |
| MS.gene06009.t1 | AT4G26200 | 55.765 | 425 | 186 | 2 | 12 | 435 | 18 | 441 | 3.07e-177 | 505 |
| MS.gene06009.t1 | AT1G01480 | 57.908 | 392 | 150 | 6 | 107 | 485 | 1 | 390 | 1.73e-167 | 478 |
| MS.gene06009.t1 | AT5G51690 | 42.822 | 411 | 231 | 2 | 25 | 434 | 82 | 489 | 3.64e-127 | 379 |
| MS.gene06009.t1 | AT1G62960 | 42.373 | 413 | 228 | 6 | 22 | 432 | 143 | 547 | 2.53e-123 | 371 |
| MS.gene06009.t1 | AT5G51690 | 43.539 | 356 | 198 | 1 | 79 | 434 | 14 | 366 | 2.06e-114 | 342 |
| MS.gene06009.t1 | AT2G22250 | 24.533 | 375 | 229 | 16 | 80 | 432 | 74 | 416 | 1.08e-19 | 91.7 |
| MS.gene06009.t1 | AT2G22250 | 24.533 | 375 | 229 | 16 | 80 | 432 | 121 | 463 | 1.18e-19 | 92.0 |
| MS.gene06009.t1 | AT2G22250 | 24.533 | 375 | 229 | 16 | 80 | 432 | 121 | 463 | 1.18e-19 | 92.0 |
| MS.gene06009.t1 | AT1G17290 | 26.298 | 289 | 195 | 10 | 94 | 368 | 177 | 461 | 2.16e-18 | 88.6 |
| MS.gene06009.t1 | AT1G23310 | 25.000 | 348 | 226 | 15 | 87 | 408 | 100 | 438 | 2.25e-18 | 87.8 |
| MS.gene06009.t1 | AT1G23310 | 25.000 | 348 | 226 | 15 | 87 | 408 | 100 | 438 | 2.50e-18 | 87.8 |
| MS.gene06009.t1 | AT1G70580 | 25.581 | 301 | 205 | 12 | 87 | 372 | 100 | 396 | 8.16e-18 | 86.3 |
| MS.gene06009.t1 | AT1G70580 | 25.581 | 301 | 205 | 12 | 87 | 372 | 100 | 396 | 8.16e-18 | 86.3 |
| MS.gene06009.t1 | AT1G70580 | 25.581 | 301 | 205 | 12 | 87 | 372 | 100 | 396 | 8.16e-18 | 86.3 |
| MS.gene06009.t1 | AT1G70580 | 25.581 | 301 | 205 | 12 | 87 | 372 | 100 | 396 | 8.16e-18 | 86.3 |
| MS.gene06009.t1 | AT1G72330 | 23.204 | 362 | 252 | 12 | 94 | 434 | 174 | 530 | 4.10e-17 | 84.3 |
| MS.gene06009.t1 | AT1G72330 | 22.164 | 379 | 256 | 12 | 90 | 434 | 170 | 543 | 1.93e-15 | 79.3 |
| MS.gene06009.t1 | AT5G36160 | 22.554 | 368 | 240 | 14 | 89 | 440 | 79 | 417 | 1.13e-14 | 76.3 |
| MS.gene06009.t1 | AT1G72330 | 26.360 | 239 | 167 | 7 | 90 | 323 | 170 | 404 | 3.82e-14 | 74.7 |
| MS.gene06009.t1 | AT1G77670 | 23.121 | 346 | 231 | 13 | 94 | 432 | 116 | 433 | 4.57e-12 | 68.6 |
| MS.gene06009.t1 | AT5G53970 | 22.346 | 358 | 241 | 13 | 95 | 440 | 76 | 408 | 9.23e-11 | 64.3 |
Find 92 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCTGATTTGGTTCAAAAT+TGG | 0.164302 | 4.1:+5324250 | MS.gene06009:CDS |
| CGTATATTTCATCGCTTATT+AGG | 0.237518 | 4.1:-5325501 | None:intergenic |
| AGAGTACAAATTGAGGCTTC+TGG | 0.284872 | 4.1:-5324285 | None:intergenic |
| TTTCCAGCTTACTGCTGATT+TGG | 0.296356 | 4.1:+5324239 | MS.gene06009:intron |
| TTTGCACTTTCGCAGATAAC+TGG | 0.298899 | 4.1:-5325307 | None:intergenic |
| AGAGATTTGAGGTGGAGAAC+AGG | 0.302380 | 4.1:+5325271 | MS.gene06009:CDS |
| GCGCGCAAAATGTCGAGTTT+TGG | 0.341792 | 4.1:+5325703 | MS.gene06009:CDS |
| AGCTACATTTGAATCAGAAT+TGG | 0.358107 | 4.1:+5325930 | MS.gene06009:CDS |
| ATTTGTGGTTCAGAATAATA+AGG | 0.368943 | 4.1:+5326098 | MS.gene06009:CDS |
| TTCTGATGGTGTTATCCAAA+TGG | 0.370329 | 4.1:+5324085 | MS.gene06009:CDS |
| AGTACATAATTTCAAAGAAA+TGG | 0.381772 | 4.1:+5324314 | MS.gene06009:CDS |
| TCAGAATAATAAGGAGGTTA+TGG | 0.384538 | 4.1:+5326107 | MS.gene06009:CDS |
| AACACAGACACAATACTTGA+TGG | 0.385707 | 4.1:+5325735 | MS.gene06009:CDS |
| GCCTCAATTTGTACTCTAGA+AGG | 0.386175 | 4.1:+5324291 | MS.gene06009:CDS |
| ACAAGAGGTGACTGAGGAAA+TGG | 0.387130 | 4.1:-5326225 | None:intergenic |
| TAAACAATTAATTCCAACTT+TGG | 0.390119 | 4.1:-5325854 | None:intergenic |
| TCATTTCATTGTTCTGAGCC+AGG | 0.391963 | 4.1:+5326006 | MS.gene06009:CDS |
| ACTAGTGGATTAACCAAAGT+TGG | 0.392203 | 4.1:+5325841 | MS.gene06009:CDS |
| GAGTACAAATTGAGGCTTCT+GGG | 0.396801 | 4.1:-5324284 | None:intergenic |
| GAAACATCATCTTACTTTGA+TGG | 0.397210 | 4.1:+5324020 | MS.gene06009:CDS |
| AATGGGTCTTGCAGAGAATC+AGG | 0.399230 | 4.1:+5324103 | MS.gene06009:CDS |
| GATTCTCTGCAAGACCCATT+TGG | 0.400674 | 4.1:-5324100 | None:intergenic |
| GTGCCTACTCCTTACTATCC+AGG | 0.402112 | 4.1:+5324607 | MS.gene06009:CDS |
| GGATTTGAGAGGACTTCTTA+AGG | 0.406992 | 4.1:+5325906 | MS.gene06009:CDS |
| TCAGATATGCTTATGAAACT+TGG | 0.407331 | 4.1:-5325544 | None:intergenic |
| TTGAATCAGAATTGGAACTT+TGG | 0.414840 | 4.1:+5325938 | MS.gene06009:CDS |
| CGGTCCATAACTGTGCCTAA+TGG | 0.421374 | 4.1:-5325430 | None:intergenic |
| CAACGGTTCTTAATGTGCTT+CGG | 0.426255 | 4.1:-5325450 | None:intergenic |
| AACTGTGCCTAATGGATTTG+AGG | 0.440159 | 4.1:-5325422 | None:intergenic |
| GTGATGAGTGGTGGAGCAAC+TGG | 0.440195 | 4.1:+5324532 | MS.gene06009:CDS |
| CTTGCTGGCATAGTAATTTG+AGG | 0.441796 | 4.1:+5326151 | MS.gene06009:CDS |
| ACAAAGGATTAGATCATTTG+TGG | 0.445312 | 4.1:+5326083 | MS.gene06009:CDS |
| ATTAATTGTTTACAAAGTAA+TGG | 0.455659 | 4.1:+5325865 | MS.gene06009:CDS |
| TGTACATACCCTGGATAGTA+AGG | 0.457320 | 4.1:-5324616 | None:intergenic |
| TTGAGGTTAAGCCTTAAAAC+AGG | 0.470153 | 4.1:+5326168 | MS.gene06009:CDS |
| AAATCCATTAGGCACAGTTA+TGG | 0.479153 | 4.1:+5325426 | MS.gene06009:CDS |
| TCAAAAGACATGGGATTCCC+TGG | 0.480186 | 4.1:+5325631 | MS.gene06009:CDS |
| ACTGTGCCTAATGGATTTGA+GGG | 0.481893 | 4.1:-5325421 | None:intergenic |
| TCTGATGGTGTTATCCAAAT+GGG | 0.485730 | 4.1:+5324086 | MS.gene06009:CDS |
| CATCATCTTACTTTGATGGA+TGG | 0.487153 | 4.1:+5324024 | MS.gene06009:CDS |
| GATTCTGATGTTATCTTCTG+TGG | 0.488021 | 4.1:-5325377 | None:intergenic |
| AGAAGAACACTAAACCTTGC+TGG | 0.489355 | 4.1:+5326136 | MS.gene06009:CDS |
| CAGATATGCTTATGAAACTT+GGG | 0.491656 | 4.1:-5325543 | None:intergenic |
| GCAGATTTGATAGAGATTTG+AGG | 0.492142 | 4.1:+5325260 | MS.gene06009:intron |
| CATTTCATTGTTCTGAGCCA+GGG | 0.492750 | 4.1:+5326007 | MS.gene06009:CDS |
| ACCAGGATCTGCCAAACAAA+AGG | 0.493747 | 4.1:-5324572 | None:intergenic |
| AAACTATGTGAACGAGGTTA+CGG | 0.508352 | 4.1:-5325600 | None:intergenic |
| TCTTAGACAACAATTGAGGT+TGG | 0.527263 | 4.1:-5323974 | None:intergenic |
| ACAAATCCCTCAAATCCATT+AGG | 0.528896 | 4.1:+5325415 | MS.gene06009:CDS |
| GCTATCTTAGACAACAATTG+AGG | 0.540964 | 4.1:-5323978 | None:intergenic |
| GAAGATAACATCAGAATCAA+AGG | 0.542170 | 4.1:+5325382 | MS.gene06009:CDS |
| CCACTCATCACAATACGATC+AGG | 0.544520 | 4.1:-5324520 | None:intergenic |
| TCTAAGATAGCCACTGGTGA+TGG | 0.550202 | 4.1:+5323990 | MS.gene06009:CDS |
| CCACTCACATTTCTGAACTC+TGG | 0.552742 | 4.1:-5324363 | None:intergenic |
| TGCCTACTCCTTACTATCCA+GGG | 0.556150 | 4.1:+5324608 | MS.gene06009:CDS |
| TCCTTCTAGAGTACAAATTG+AGG | 0.558961 | 4.1:-5324292 | None:intergenic |
| CAAGTAGTGGCTTTAACAAG+AGG | 0.562133 | 4.1:-5326240 | None:intergenic |
| ATGTGCAAATTGCTTTACAA+AGG | 0.563606 | 4.1:+5326067 | MS.gene06009:CDS |
| GATTTGATAGAGATTTGAGG+TGG | 0.566695 | 4.1:+5325263 | MS.gene06009:intron |
| ATCTGCCAAACAAAAGGCAG+TGG | 0.571931 | 4.1:-5324566 | None:intergenic |
| CTCAAATTACTATGCCAGCA+AGG | 0.576441 | 4.1:-5326150 | None:intergenic |
| TTGTTGTCTAAGATAGCCAC+TGG | 0.576629 | 4.1:+5323984 | MS.gene06009:CDS |
| TGGAGCAACTGGAGCACATG+AGG | 0.576944 | 4.1:+5324543 | MS.gene06009:CDS |
| GGTTAAGCCTTAAAACAGGA+AGG | 0.579184 | 4.1:+5326172 | MS.gene06009:CDS |
| GTTAAGATTAATGTTTCACC+TGG | 0.580822 | 4.1:+5325979 | MS.gene06009:CDS |
| AATTGTTTACAAAGTAATGG+TGG | 0.584470 | 4.1:+5325868 | MS.gene06009:CDS |
| TTATACCAACTCTAAAACCA+GGG | 0.584528 | 4.1:-5325648 | None:intergenic |
| TACAGTCTTTCAAAAGACAT+GGG | 0.586545 | 4.1:+5325622 | MS.gene06009:CDS |
| GACTGAGGAAATGGAGAATG+AGG | 0.586929 | 4.1:-5326216 | None:intergenic |
| AAATTCATGTCTAGAACAAG+AGG | 0.590021 | 4.1:+5324478 | MS.gene06009:CDS |
| ATGCTAAATAATTCAAGTAG+TGG | 0.595412 | 4.1:-5326253 | None:intergenic |
| TTACAGTCTTTCAAAAGACA+TGG | 0.595760 | 4.1:+5325621 | MS.gene06009:CDS |
| TTCATTGATGAAATTTACAA+CGG | 0.599733 | 4.1:-5325467 | None:intergenic |
| TAGAGTGTGTTATGCTAACA+TGG | 0.616578 | 4.1:+5326035 | MS.gene06009:CDS |
| ATTATACCAACTCTAAAACC+AGG | 0.620538 | 4.1:-5325649 | None:intergenic |
| TTCTTGCTGAAAGTGCAAAG+AGG | 0.621704 | 4.1:+5325794 | MS.gene06009:CDS |
| TTCATTGTTCTGAGCCAGGG+TGG | 0.625682 | 4.1:+5326010 | MS.gene06009:CDS |
| CGATGAAATATACGCTGCAA+CGG | 0.630366 | 4.1:+5325510 | MS.gene06009:CDS |
| TGTGGTTCAGAATAATAAGG+AGG | 0.634977 | 4.1:+5326101 | MS.gene06009:CDS |
| GATCGTATTGTGATGAGTGG+TGG | 0.635293 | 4.1:+5324523 | MS.gene06009:CDS |
| GTGCAAAGAGGTTAGCACAA+AGG | 0.640437 | 4.1:+5325806 | MS.gene06009:CDS |
| TACCCTGGATAGTAAGGAGT+AGG | 0.653482 | 4.1:-5324610 | None:intergenic |
| CCTGATCGTATTGTGATGAG+TGG | 0.663504 | 4.1:+5324520 | MS.gene06009:CDS |
| GAACAATGAAATGAAACACC+AGG | 0.667249 | 4.1:-5325997 | None:intergenic |
| ATATGCTTATGAAACTTGGG+TGG | 0.669331 | 4.1:-5325540 | None:intergenic |
| TTCACCATGTCCATCACCAG+TGG | 0.671313 | 4.1:-5324000 | None:intergenic |
| GACTGTAAACTATGTGAACG+AGG | 0.673179 | 4.1:-5325606 | None:intergenic |
| TTTGTGTGGATGGATTTGAG+AGG | 0.680530 | 4.1:+5325895 | MS.gene06009:CDS |
| TTTGCGCGCACAATTTACAA+CGG | 0.684836 | 4.1:-5325689 | None:intergenic |
| ATAGCCACTGGTGATGGACA+TGG | 0.685257 | 4.1:+5323996 | MS.gene06009:CDS |
| GCTTTAACAAGAGGTGACTG+AGG | 0.694413 | 4.1:-5326231 | None:intergenic |
| TAACACACTCTAAACCACCC+TGG | 0.698750 | 4.1:-5326024 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTAATATGAATTTTTAC+AGG | + | chr4.1:5324447-5324466 | MS.gene06009:intron | 10.0% |
| !! | AAAAATAAAGATGAAGAAAA+GGG | - | chr4.1:5324659-5324678 | None:intergenic | 15.0% |
| !! | ATTAATTGTTTACAAAGTAA+TGG | + | chr4.1:5325865-5325884 | MS.gene06009:CDS | 15.0% |
| !! | GAATATTAAAGTAATAACTA+AGG | - | chr4.1:5324957-5324976 | None:intergenic | 15.0% |
| !! | AAAATAAAGATGAAGAAAAG+GGG | - | chr4.1:5324658-5324677 | None:intergenic | 20.0% |
| !! | AAAATAAATAATTGCTCTGA+TGG | - | chr4.1:5325101-5325120 | None:intergenic | 20.0% |
| !! | AGTACATAATTTCAAAGAAA+TGG | + | chr4.1:5324314-5324333 | MS.gene06009:CDS | 20.0% |
| !! | GAAAAATAAAGATGAAGAAA+AGG | - | chr4.1:5324660-5324679 | None:intergenic | 20.0% |
| !! | TAAACAATTAATTCCAACTT+TGG | - | chr4.1:5325857-5325876 | None:intergenic | 20.0% |
| !! | TAGAATATTATATGACTATG+TGG | - | chr4.1:5325191-5325210 | None:intergenic | 20.0% |
| !! | TTCATTGATGAAATTTACAA+CGG | - | chr4.1:5325470-5325489 | None:intergenic | 20.0% |
| !!! | AATGTTTTTGTTTTACTTTC+TGG | - | chr4.1:5325154-5325173 | None:intergenic | 20.0% |
| ! | AATTGTTTACAAAGTAATGG+TGG | + | chr4.1:5325868-5325887 | MS.gene06009:CDS | 25.0% |
| ! | ATTTGTGGTTCAGAATAATA+AGG | + | chr4.1:5326098-5326117 | MS.gene06009:CDS | 25.0% |
| ! | TAAAAATATACTGCATGGAT+AGG | - | chr4.1:5324189-5324208 | None:intergenic | 25.0% |
| !! | TCAAGTTTAAGATATGATGA+TGG | - | chr4.1:5324736-5324755 | None:intergenic | 25.0% |
| !! | TTTTTCATATGCATCTTCTA+AGG | - | chr4.1:5325356-5325375 | None:intergenic | 25.0% |
| !!! | AATTTTTGGTTGGATGAAAA+GGG | - | chr4.1:5324067-5324086 | None:intergenic | 25.0% |
| !!! | TTACTTTCTGGTTTGTATAT+AGG | - | chr4.1:5325142-5325161 | None:intergenic | 25.0% |
| ACAAAGGATTAGATCATTTG+TGG | + | chr4.1:5326083-5326102 | MS.gene06009:CDS | 30.0% | |
| AGAGCTAAAAATATACTGCA+TGG | - | chr4.1:5324194-5324213 | None:intergenic | 30.0% | |
| AGCTACATTTGAATCAGAAT+TGG | + | chr4.1:5325930-5325949 | MS.gene06009:CDS | 30.0% | |
| ATGTGCAAATTGCTTTACAA+AGG | + | chr4.1:5326067-5326086 | MS.gene06009:CDS | 30.0% | |
| CAGATATGCTTATGAAACTT+GGG | - | chr4.1:5325546-5325565 | None:intergenic | 30.0% | |
| CGTATATTTCATCGCTTATT+AGG | - | chr4.1:5325504-5325523 | None:intergenic | 30.0% | |
| GAAACATCATCTTACTTTGA+TGG | + | chr4.1:5324020-5324039 | MS.gene06009:CDS | 30.0% | |
| GAAGATAACATCAGAATCAA+AGG | + | chr4.1:5325382-5325401 | MS.gene06009:CDS | 30.0% | |
| GTTAAGATTAATGTTTCACC+TGG | + | chr4.1:5325979-5325998 | MS.gene06009:CDS | 30.0% | |
| TAATAACTAAGGCTGATTAG+TGG | - | chr4.1:5324946-5324965 | None:intergenic | 30.0% | |
| TACAGTCTTTCAAAAGACAT+GGG | + | chr4.1:5325622-5325641 | MS.gene06009:CDS | 30.0% | |
| TCAGAATAATAAGGAGGTTA+TGG | + | chr4.1:5326107-5326126 | MS.gene06009:CDS | 30.0% | |
| TCAGATATGCTTATGAAACT+TGG | - | chr4.1:5325547-5325566 | None:intergenic | 30.0% | |
| TTACAGTCTTTCAAAAGACA+TGG | + | chr4.1:5325621-5325640 | MS.gene06009:CDS | 30.0% | |
| TTGAATCAGAATTGGAACTT+TGG | + | chr4.1:5325938-5325957 | MS.gene06009:CDS | 30.0% | |
| ! | AAATTCATGTCTAGAACAAG+AGG | + | chr4.1:5324478-5324497 | MS.gene06009:CDS | 30.0% |
| ! | ATATGAATTTTTACAGGCTG+TGG | + | chr4.1:5324453-5324472 | MS.gene06009:intron | 30.0% |
| ! | CAAAGAAATGGCTAATTTTC+AGG | + | chr4.1:5324326-5324345 | MS.gene06009:CDS | 30.0% |
| ! | GATAACACCATCAGAATTTT+TGG | - | chr4.1:5324081-5324100 | None:intergenic | 30.0% |
| !! | ATTATACCAACTCTAAAACC+AGG | - | chr4.1:5325652-5325671 | None:intergenic | 30.0% |
| !! | GCTAATTTTCAGGATTATCA+TGG | + | chr4.1:5324336-5324355 | MS.gene06009:CDS | 30.0% |
| !! | TTATACCAACTCTAAAACCA+GGG | - | chr4.1:5325651-5325670 | None:intergenic | 30.0% |
| !!! | GAATTTTTGGTTGGATGAAA+AGG | - | chr4.1:5324068-5324087 | None:intergenic | 30.0% |
| AAACTATGTGAACGAGGTTA+CGG | - | chr4.1:5325603-5325622 | None:intergenic | 35.0% | |
| AAATCCATTAGGCACAGTTA+TGG | + | chr4.1:5325426-5325445 | MS.gene06009:CDS | 35.0% | |
| AACACAGACACAATACTTGA+TGG | + | chr4.1:5325735-5325754 | MS.gene06009:CDS | 35.0% | |
| ACAAATCCCTCAAATCCATT+AGG | + | chr4.1:5325415-5325434 | MS.gene06009:CDS | 35.0% | |
| ATATGCTTATGAAACTTGGG+TGG | - | chr4.1:5325543-5325562 | None:intergenic | 35.0% | |
| CAGGTATATATCAAGCTTTG+AGG | + | chr4.1:5324122-5324141 | MS.gene06009:intron | 35.0% | |
| CATCATCTTACTTTGATGGA+TGG | + | chr4.1:5324024-5324043 | MS.gene06009:CDS | 35.0% | |
| CATCCAACCAAAAATTCTGA+TGG | + | chr4.1:5324071-5324090 | MS.gene06009:CDS | 35.0% | |
| GAACAATGAAATGAAACACC+AGG | - | chr4.1:5326000-5326019 | None:intergenic | 35.0% | |
| GATTCTGATGTTATCTTCTG+TGG | - | chr4.1:5325380-5325399 | None:intergenic | 35.0% | |
| GATTTGATAGAGATTTGAGG+TGG | + | chr4.1:5325263-5325282 | MS.gene06009:intron | 35.0% | |
| GCAGATTTGATAGAGATTTG+AGG | + | chr4.1:5325260-5325279 | MS.gene06009:intron | 35.0% | |
| GCTATCTTAGACAACAATTG+AGG | - | chr4.1:5323981-5324000 | None:intergenic | 35.0% | |
| TAGAGTGTGTTATGCTAACA+TGG | + | chr4.1:5326035-5326054 | MS.gene06009:CDS | 35.0% | |
| TCACTGCACTGTAAAGTAAA+CGG | + | chr4.1:5324851-5324870 | MS.gene06009:intron | 35.0% | |
| TCTTAGACAACAATTGAGGT+TGG | - | chr4.1:5323977-5323996 | None:intergenic | 35.0% | |
| TGAATTGAATGTACATACCC+TGG | - | chr4.1:5324628-5324647 | None:intergenic | 35.0% | |
| TGTGGTTCAGAATAATAAGG+AGG | + | chr4.1:5326101-5326120 | MS.gene06009:CDS | 35.0% | |
| TTGAGGTTAAGCCTTAAAAC+AGG | + | chr4.1:5326168-5326187 | MS.gene06009:CDS | 35.0% | |
| TTTATAGTGCAATCAGCTAC+AGG | + | chr4.1:5324772-5324791 | MS.gene06009:intron | 35.0% | |
| ! | AGGTACAGAATTTTCACTAG+TGG | + | chr4.1:5325826-5325845 | MS.gene06009:CDS | 35.0% |
| ! | CATCAAACCTTCCTGTTTTA+AGG | - | chr4.1:5326182-5326201 | None:intergenic | 35.0% |
| !! | ACTAGTGGATTAACCAAAGT+TGG | + | chr4.1:5325841-5325860 | MS.gene06009:CDS | 35.0% |
| !! | AGGTAAAACATTTTCAAGCG+CGG | + | chr4.1:5324875-5324894 | MS.gene06009:intron | 35.0% |
| !! | CTGCTGATTTGGTTCAAAAT+TGG | + | chr4.1:5324250-5324269 | MS.gene06009:CDS | 35.0% |
| !! | TCCTTCTAGAGTACAAATTG+AGG | - | chr4.1:5324295-5324314 | None:intergenic | 35.0% |
| !! | TCTGATGGTGTTATCCAAAT+GGG | + | chr4.1:5324086-5324105 | MS.gene06009:CDS | 35.0% |
| !! | TTCTGATGGTGTTATCCAAA+TGG | + | chr4.1:5324085-5324104 | MS.gene06009:CDS | 35.0% |
| !!! | ACACCATCAGAATTTTTGGT+TGG | - | chr4.1:5324077-5324096 | None:intergenic | 35.0% |
| !!! | GGAACTGACTTTTTCAACAA+GGG | + | chr4.1:5325013-5325032 | MS.gene06009:intron | 35.0% |
| !!! | TGGAACTGACTTTTTCAACA+AGG | + | chr4.1:5325012-5325031 | MS.gene06009:intron | 35.0% |
| AGAAGAACACTAAACCTTGC+TGG | + | chr4.1:5326136-5326155 | MS.gene06009:CDS | 40.0% | |
| AGAGTACAAATTGAGGCTTC+TGG | - | chr4.1:5324288-5324307 | None:intergenic | 40.0% | |
| CAACGGTTCTTAATGTGCTT+CGG | - | chr4.1:5325453-5325472 | None:intergenic | 40.0% | |
| CGATGAAATATACGCTGCAA+CGG | + | chr4.1:5325510-5325529 | MS.gene06009:CDS | 40.0% | |
| CTCAAATTACTATGCCAGCA+AGG | - | chr4.1:5326153-5326172 | None:intergenic | 40.0% | |
| CTTGCTGGCATAGTAATTTG+AGG | + | chr4.1:5326151-5326170 | MS.gene06009:CDS | 40.0% | |
| GACTGTAAACTATGTGAACG+AGG | - | chr4.1:5325609-5325628 | None:intergenic | 40.0% | |
| GAGTACAAATTGAGGCTTCT+GGG | - | chr4.1:5324287-5324306 | None:intergenic | 40.0% | |
| GCCTCAATTTGTACTCTAGA+AGG | + | chr4.1:5324291-5324310 | MS.gene06009:CDS | 40.0% | |
| GGATTTGAGAGGACTTCTTA+AGG | + | chr4.1:5325906-5325925 | MS.gene06009:CDS | 40.0% | |
| GGTTAAGCCTTAAAACAGGA+AGG | + | chr4.1:5326172-5326191 | MS.gene06009:CDS | 40.0% | |
| TCCATCAAAATTCACTACCC+TGG | - | chr4.1:5324996-5325015 | None:intergenic | 40.0% | |
| TGTACATACCCTGGATAGTA+AGG | - | chr4.1:5324619-5324638 | None:intergenic | 40.0% | |
| TTTGCACTTTCGCAGATAAC+TGG | - | chr4.1:5325310-5325329 | None:intergenic | 40.0% | |
| TTTGCGCGCACAATTTACAA+CGG | - | chr4.1:5325692-5325711 | None:intergenic | 40.0% | |
| ! | CATTTCATTGTTCTGAGCCA+GGG | + | chr4.1:5326007-5326026 | MS.gene06009:CDS | 40.0% |
| ! | TCATTTCATTGTTCTGAGCC+AGG | + | chr4.1:5326006-5326025 | MS.gene06009:CDS | 40.0% |
| ! | TTCTTGCTGAAAGTGCAAAG+AGG | + | chr4.1:5325794-5325813 | MS.gene06009:CDS | 40.0% |
| ! | TTGTTGTCTAAGATAGCCAC+TGG | + | chr4.1:5323984-5324003 | MS.gene06009:CDS | 40.0% |
| ! | TTTCCAGCTTACTGCTGATT+TGG | + | chr4.1:5324239-5324258 | MS.gene06009:intron | 40.0% |
| ! | TTTGTGTGGATGGATTTGAG+AGG | + | chr4.1:5325895-5325914 | MS.gene06009:CDS | 40.0% |
| !! | AACTGTGCCTAATGGATTTG+AGG | - | chr4.1:5325425-5325444 | None:intergenic | 40.0% |
| !! | ACTGTGCCTAATGGATTTGA+GGG | - | chr4.1:5325424-5325443 | None:intergenic | 40.0% |
| !! | CAAGTAGTGGCTTTAACAAG+AGG | - | chr4.1:5326243-5326262 | None:intergenic | 40.0% |
| !!! | AGATCCTGGTGATGCTTTTT+TGG | + | chr4.1:5324585-5324604 | MS.gene06009:CDS | 40.0% |
| !!! | GTAATGGTGGACTTTTTGTG+TGG | + | chr4.1:5325881-5325900 | MS.gene06009:CDS | 40.0% |
| AATGGGTCTTGCAGAGAATC+AGG | + | chr4.1:5324103-5324122 | MS.gene06009:CDS | 45.0% | |
| ACAAGAGGTGACTGAGGAAA+TGG | - | chr4.1:5326228-5326247 | None:intergenic | 45.0% | |
| ACCAGGATCTGCCAAACAAA+AGG | - | chr4.1:5324575-5324594 | None:intergenic | 45.0% | |
| ATCTGCCAAACAAAAGGCAG+TGG | - | chr4.1:5324569-5324588 | None:intergenic | 45.0% | |
| CCACTCACATTTCTGAACTC+TGG | - | chr4.1:5324366-5324385 | None:intergenic | 45.0% | |
| CCACTCATCACAATACGATC+AGG | - | chr4.1:5324523-5324542 | None:intergenic | 45.0% | |
| CCAGAGTTCAGAAATGTGAG+TGG | + | chr4.1:5324363-5324382 | MS.gene06009:intron | 45.0% | |
| CCAGTCATCATTAGAAGCCA+GGG | + | chr4.1:5324976-5324995 | MS.gene06009:intron | 45.0% | |
| CCTGATCGTATTGTGATGAG+TGG | + | chr4.1:5324520-5324539 | MS.gene06009:CDS | 45.0% | |
| GAACCAAATCAGCAGTAAGC+TGG | - | chr4.1:5324245-5324264 | None:intergenic | 45.0% | |
| GACTGAGGAAATGGAGAATG+AGG | - | chr4.1:5326219-5326238 | None:intergenic | 45.0% | |
| GATCGTATTGTGATGAGTGG+TGG | + | chr4.1:5324523-5324542 | MS.gene06009:CDS | 45.0% | |
| GATTCTCTGCAAGACCCATT+TGG | - | chr4.1:5324103-5324122 | None:intergenic | 45.0% | |
| GCTTTAACAAGAGGTGACTG+AGG | - | chr4.1:5326234-5326253 | None:intergenic | 45.0% | |
| GTGCAAAGAGGTTAGCACAA+AGG | + | chr4.1:5325806-5325825 | MS.gene06009:CDS | 45.0% | |
| TAACACACTCTAAACCACCC+TGG | - | chr4.1:5326027-5326046 | None:intergenic | 45.0% | |
| TACCCTGGATAGTAAGGAGT+AGG | - | chr4.1:5324613-5324632 | None:intergenic | 45.0% | |
| TCAAAAGACATGGGATTCCC+TGG | + | chr4.1:5325631-5325650 | MS.gene06009:CDS | 45.0% | |
| TCCAGTCATCATTAGAAGCC+AGG | + | chr4.1:5324975-5324994 | MS.gene06009:intron | 45.0% | |
| TGCACTGTAAAGTAAACGGC+AGG | + | chr4.1:5324855-5324874 | MS.gene06009:intron | 45.0% | |
| TGCCTACTCCTTACTATCCA+GGG | + | chr4.1:5324608-5324627 | MS.gene06009:CDS | 45.0% | |
| ! | AGAGATTTGAGGTGGAGAAC+AGG | + | chr4.1:5325271-5325290 | MS.gene06009:CDS | 45.0% |
| ! | GCCAGGGTAGTGAATTTTGA+TGG | + | chr4.1:5324992-5325011 | MS.gene06009:intron | 45.0% |
| ! | TCTAAGATAGCCACTGGTGA+TGG | + | chr4.1:5323990-5324009 | MS.gene06009:CDS | 45.0% |
| !!! | GGATTCCCTGGTTTTAGAGT+TGG | + | chr4.1:5325643-5325662 | MS.gene06009:CDS | 45.0% |
| !!! | TGGTGGACTTTTTGTGTGGA+TGG | + | chr4.1:5325885-5325904 | MS.gene06009:CDS | 45.0% |
| !!! | TAATTGATAATATTTATAAT+TGG | - | chr4.1:5324682-5324701 | None:intergenic | 5.0% |
| CCCTGGCTTCTAATGATGAC+TGG | - | chr4.1:5324979-5324998 | None:intergenic | 50.0% | |
| CGGTCCATAACTGTGCCTAA+TGG | - | chr4.1:5325433-5325452 | None:intergenic | 50.0% | |
| GTGCCTACTCCTTACTATCC+AGG | + | chr4.1:5324607-5324626 | MS.gene06009:CDS | 50.0% | |
| TTCACCATGTCCATCACCAG+TGG | - | chr4.1:5324003-5324022 | None:intergenic | 50.0% | |
| ! | GCGCGCAAAATGTCGAGTTT+TGG | + | chr4.1:5325703-5325722 | MS.gene06009:CDS | 50.0% |
| ! | TGAGGCCACTGCCTTTTGTT+TGG | + | chr4.1:5324561-5324580 | MS.gene06009:CDS | 50.0% |
| ! | TTCATTGTTCTGAGCCAGGG+TGG | + | chr4.1:5326010-5326029 | MS.gene06009:CDS | 50.0% |
| !! | ATAGCCACTGGTGATGGACA+TGG | + | chr4.1:5323996-5324015 | MS.gene06009:CDS | 50.0% |
| !! | GCCTTTTGTTTGGCAGATCC+TGG | + | chr4.1:5324571-5324590 | MS.gene06009:CDS | 50.0% |
| !! | GGCACCAAAAAAGCATCACC+AGG | - | chr4.1:5324592-5324611 | None:intergenic | 50.0% |
| CAGTGCAGTGAGCTGCAAGT+CGG | - | chr4.1:5324842-5324861 | None:intergenic | 55.0% | |
| TGGAGCAACTGGAGCACATG+AGG | + | chr4.1:5324543-5324562 | MS.gene06009:CDS | 55.0% | |
| ! | GTGATGAGTGGTGGAGCAAC+TGG | + | chr4.1:5324532-5324551 | MS.gene06009:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 5323954 | 5326263 | 5323954 | ID=MS.gene06009 |
| chr4.1 | mRNA | 5323954 | 5326263 | 5323954 | ID=MS.gene06009.t1;Parent=MS.gene06009 |
| chr4.1 | exon | 5323954 | 5324124 | 5323954 | ID=MS.gene06009.t1.exon1;Parent=MS.gene06009.t1 |
| chr4.1 | CDS | 5323954 | 5324124 | 5323954 | ID=cds.MS.gene06009.t1;Parent=MS.gene06009.t1 |
| chr4.1 | exon | 5324246 | 5324377 | 5324246 | ID=MS.gene06009.t1.exon2;Parent=MS.gene06009.t1 |
| chr4.1 | CDS | 5324246 | 5324377 | 5324246 | ID=cds.MS.gene06009.t1;Parent=MS.gene06009.t1 |
| chr4.1 | exon | 5324469 | 5324629 | 5324469 | ID=MS.gene06009.t1.exon3;Parent=MS.gene06009.t1 |
| chr4.1 | CDS | 5324469 | 5324629 | 5324469 | ID=cds.MS.gene06009.t1;Parent=MS.gene06009.t1 |
| chr4.1 | exon | 5325264 | 5326263 | 5325264 | ID=MS.gene06009.t1.exon4;Parent=MS.gene06009.t1 |
| chr4.1 | CDS | 5325264 | 5326263 | 5325264 | ID=cds.MS.gene06009.t1;Parent=MS.gene06009.t1 |
| Gene Sequence |
| Protein sequence |
