Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55742.t1 | XP_013447110.1 | 97.7 | 487 | 11 | 0 | 1 | 487 | 1 | 487 | 3.20E-282 | 980.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55742.t1 | P31531 | 83.1 | 486 | 79 | 2 | 1 | 486 | 1 | 483 | 1.3e-244 | 846.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55742.t1 | A0A072TUM5 | 97.7 | 487 | 11 | 0 | 1 | 487 | 1 | 487 | 2.3e-282 | 980.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene06009 | MS.gene55742 | 0.997117 | 3.68E-237 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene55742 | MS.gene81187 | PPI |
| MS.gene55742 | MS.gene33218 | PPI |
| MS.gene055893 | MS.gene55742 | PPI |
| MS.gene42900 | MS.gene55742 | PPI |
| MS.gene55742 | MS.gene42898 | PPI |
| MS.gene55742 | MS.gene42899 | PPI |
| MS.gene55742 | MS.gene055892 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55742.t1 | MTR_8g098930 | 97.741 | 487 | 11 | 0 | 1 | 487 | 1 | 487 | 0.0 | 1002 |
| MS.gene55742.t1 | MTR_7g079080 | 65.377 | 491 | 158 | 4 | 1 | 486 | 1 | 484 | 0.0 | 669 |
| MS.gene55742.t1 | MTR_8g028600 | 64.792 | 480 | 158 | 3 | 10 | 486 | 9 | 480 | 0.0 | 669 |
| MS.gene55742.t1 | MTR_4g097540 | 55.011 | 449 | 194 | 3 | 10 | 450 | 2 | 450 | 0.0 | 543 |
| MS.gene55742.t1 | MTR_3g103550 | 53.571 | 448 | 199 | 4 | 11 | 451 | 1 | 446 | 0.0 | 528 |
| MS.gene55742.t1 | MTR_5g015020 | 54.503 | 433 | 191 | 4 | 10 | 436 | 2 | 434 | 0.0 | 526 |
| MS.gene55742.t1 | MTR_8g101750 | 56.368 | 424 | 176 | 2 | 12 | 435 | 12 | 426 | 0.0 | 521 |
| MS.gene55742.t1 | MTR_6g091760 | 54.853 | 443 | 193 | 5 | 1 | 441 | 1 | 438 | 0.0 | 515 |
| MS.gene55742.t1 | MTR_7g079080 | 63.636 | 385 | 129 | 3 | 107 | 486 | 1 | 379 | 1.23e-180 | 511 |
| MS.gene55742.t1 | MTR_8g101820 | 52.103 | 428 | 177 | 4 | 12 | 436 | 12 | 414 | 3.03e-165 | 473 |
| MS.gene55742.t1 | MTR_6g463260 | 41.882 | 425 | 243 | 2 | 12 | 435 | 104 | 525 | 1.38e-133 | 397 |
| MS.gene55742.t1 | MTR_5g011400 | 40.049 | 407 | 241 | 1 | 25 | 431 | 85 | 488 | 4.48e-118 | 356 |
| MS.gene55742.t1 | MTR_2g090730 | 47.312 | 93 | 45 | 1 | 65 | 157 | 12 | 100 | 7.61e-25 | 102 |
| MS.gene55742.t1 | MTR_8g023140 | 23.647 | 351 | 241 | 12 | 94 | 422 | 158 | 503 | 8.49e-18 | 86.7 |
| MS.gene55742.t1 | MTR_5g033230 | 24.781 | 343 | 233 | 13 | 87 | 408 | 100 | 438 | 2.77e-16 | 81.6 |
| MS.gene55742.t1 | MTR_5g033230 | 24.781 | 343 | 233 | 13 | 87 | 408 | 100 | 438 | 3.17e-16 | 81.3 |
| MS.gene55742.t1 | MTR_7g106830 | 21.972 | 355 | 240 | 14 | 95 | 436 | 135 | 465 | 4.82e-16 | 80.9 |
| MS.gene55742.t1 | MTR_4g011820 | 22.599 | 354 | 234 | 14 | 87 | 432 | 61 | 382 | 5.40e-15 | 77.0 |
| MS.gene55742.t1 | MTR_2g090615 | 24.000 | 375 | 225 | 16 | 89 | 438 | 77 | 416 | 1.26e-13 | 73.2 |
| MS.gene55742.t1 | MTR_1807s0010 | 27.041 | 196 | 127 | 6 | 95 | 289 | 69 | 249 | 3.90e-13 | 71.2 |
| MS.gene55742.t1 | MTR_8g021970 | 37.037 | 108 | 45 | 4 | 233 | 340 | 11 | 95 | 4.85e-13 | 65.5 |
| MS.gene55742.t1 | MTR_3g072670 | 22.701 | 348 | 222 | 12 | 94 | 422 | 123 | 442 | 1.63e-11 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55742.t1 | AT4G11280 | 65.988 | 491 | 144 | 4 | 11 | 487 | 14 | 495 | 0.0 | 659 |
| MS.gene55742.t1 | AT3G61510 | 61.856 | 485 | 171 | 3 | 10 | 485 | 9 | 488 | 0.0 | 642 |
| MS.gene55742.t1 | AT1G01480 | 59.639 | 498 | 186 | 6 | 1 | 485 | 1 | 496 | 0.0 | 634 |
| MS.gene55742.t1 | AT4G37770 | 58.508 | 429 | 171 | 3 | 11 | 435 | 3 | 428 | 0.0 | 552 |
| MS.gene55742.t1 | AT2G22810 | 55.349 | 430 | 190 | 2 | 12 | 439 | 4 | 433 | 0.0 | 516 |
| MS.gene55742.t1 | AT4G08040 | 53.846 | 429 | 196 | 2 | 11 | 439 | 1 | 427 | 0.0 | 516 |
| MS.gene55742.t1 | AT5G65800 | 54.128 | 436 | 197 | 2 | 12 | 445 | 4 | 438 | 6.21e-180 | 513 |
| MS.gene55742.t1 | AT3G49700 | 54.005 | 437 | 198 | 2 | 12 | 446 | 4 | 439 | 7.65e-180 | 512 |
| MS.gene55742.t1 | AT4G26200 | 55.765 | 425 | 186 | 2 | 12 | 435 | 18 | 441 | 3.07e-177 | 505 |
| MS.gene55742.t1 | AT1G01480 | 57.908 | 392 | 150 | 6 | 107 | 485 | 1 | 390 | 1.73e-167 | 478 |
| MS.gene55742.t1 | AT5G51690 | 42.822 | 411 | 231 | 2 | 25 | 434 | 82 | 489 | 3.64e-127 | 379 |
| MS.gene55742.t1 | AT1G62960 | 42.373 | 413 | 228 | 6 | 22 | 432 | 143 | 547 | 2.53e-123 | 371 |
| MS.gene55742.t1 | AT5G51690 | 43.539 | 356 | 198 | 1 | 79 | 434 | 14 | 366 | 2.06e-114 | 342 |
| MS.gene55742.t1 | AT2G22250 | 24.533 | 375 | 229 | 16 | 80 | 432 | 74 | 416 | 1.08e-19 | 91.7 |
| MS.gene55742.t1 | AT2G22250 | 24.533 | 375 | 229 | 16 | 80 | 432 | 121 | 463 | 1.18e-19 | 92.0 |
| MS.gene55742.t1 | AT2G22250 | 24.533 | 375 | 229 | 16 | 80 | 432 | 121 | 463 | 1.18e-19 | 92.0 |
| MS.gene55742.t1 | AT1G17290 | 26.298 | 289 | 195 | 10 | 94 | 368 | 177 | 461 | 2.16e-18 | 88.6 |
| MS.gene55742.t1 | AT1G23310 | 25.000 | 348 | 226 | 15 | 87 | 408 | 100 | 438 | 2.25e-18 | 87.8 |
| MS.gene55742.t1 | AT1G23310 | 25.000 | 348 | 226 | 15 | 87 | 408 | 100 | 438 | 2.50e-18 | 87.8 |
| MS.gene55742.t1 | AT1G70580 | 25.581 | 301 | 205 | 12 | 87 | 372 | 100 | 396 | 8.16e-18 | 86.3 |
| MS.gene55742.t1 | AT1G70580 | 25.581 | 301 | 205 | 12 | 87 | 372 | 100 | 396 | 8.16e-18 | 86.3 |
| MS.gene55742.t1 | AT1G70580 | 25.581 | 301 | 205 | 12 | 87 | 372 | 100 | 396 | 8.16e-18 | 86.3 |
| MS.gene55742.t1 | AT1G70580 | 25.581 | 301 | 205 | 12 | 87 | 372 | 100 | 396 | 8.16e-18 | 86.3 |
| MS.gene55742.t1 | AT1G72330 | 23.204 | 362 | 252 | 12 | 94 | 434 | 174 | 530 | 4.10e-17 | 84.3 |
| MS.gene55742.t1 | AT1G72330 | 22.164 | 379 | 256 | 12 | 90 | 434 | 170 | 543 | 1.93e-15 | 79.3 |
| MS.gene55742.t1 | AT5G36160 | 22.554 | 368 | 240 | 14 | 89 | 440 | 79 | 417 | 1.13e-14 | 76.3 |
| MS.gene55742.t1 | AT1G72330 | 26.360 | 239 | 167 | 7 | 90 | 323 | 170 | 404 | 3.82e-14 | 74.7 |
| MS.gene55742.t1 | AT1G77670 | 23.121 | 346 | 231 | 13 | 94 | 432 | 116 | 433 | 4.57e-12 | 68.6 |
| MS.gene55742.t1 | AT5G53970 | 22.346 | 358 | 241 | 13 | 95 | 440 | 76 | 408 | 9.23e-11 | 64.3 |
Find 92 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCTGATTTGGTTCAAAAT+TGG | 0.164302 | 4.3:+5383204 | MS.gene55742:CDS |
| CGTATATTTCATCGCTTATT+AGG | 0.237518 | 4.3:-5384455 | None:intergenic |
| AGAGTACAAATTGAGGCTTC+TGG | 0.284872 | 4.3:-5383239 | None:intergenic |
| TTTCCAGCTTACTGCTGATT+TGG | 0.296356 | 4.3:+5383193 | MS.gene55742:intron |
| TTTGCACTTTCGCAGATAAC+TGG | 0.298899 | 4.3:-5384261 | None:intergenic |
| AGAGATTTGAGGTGGAGAAC+AGG | 0.302380 | 4.3:+5384225 | MS.gene55742:CDS |
| GCGCGCAAAATGTCGAGTTT+TGG | 0.341792 | 4.3:+5384657 | MS.gene55742:CDS |
| AGCTACATTTGAATCAGAAT+TGG | 0.358107 | 4.3:+5384884 | MS.gene55742:CDS |
| ATTTGTGGTTCAGAATAATA+AGG | 0.368943 | 4.3:+5385052 | MS.gene55742:CDS |
| TTCTGATGGTGTTATCCAAA+TGG | 0.370329 | 4.3:+5383039 | MS.gene55742:CDS |
| AGTACATAATTTCAAAGAAA+TGG | 0.381772 | 4.3:+5383268 | MS.gene55742:CDS |
| TCAGAATAATAAGGAGGTTA+TGG | 0.384538 | 4.3:+5385061 | MS.gene55742:CDS |
| AACACAGACACAATACTTGA+TGG | 0.385707 | 4.3:+5384689 | MS.gene55742:CDS |
| GCCTCAATTTGTACTCTAGA+AGG | 0.386175 | 4.3:+5383245 | MS.gene55742:CDS |
| ACAAGAGGTGACTGAGGAAA+TGG | 0.387130 | 4.3:-5385179 | None:intergenic |
| TAAACAATTAATTCCAACTT+TGG | 0.390119 | 4.3:-5384808 | None:intergenic |
| TCATTTCATTGTTCTGAGCC+AGG | 0.391963 | 4.3:+5384960 | MS.gene55742:CDS |
| ACTAGTGGATTAACCAAAGT+TGG | 0.392203 | 4.3:+5384795 | MS.gene55742:CDS |
| GAGTACAAATTGAGGCTTCT+GGG | 0.396801 | 4.3:-5383238 | None:intergenic |
| GAAACATCATCTTACTTTGA+TGG | 0.397210 | 4.3:+5382974 | MS.gene55742:CDS |
| AATGGGTCTTGCAGAGAATC+AGG | 0.399230 | 4.3:+5383057 | MS.gene55742:CDS |
| GATTCTCTGCAAGACCCATT+TGG | 0.400674 | 4.3:-5383054 | None:intergenic |
| GTGCCTACTCCTTACTATCC+AGG | 0.402112 | 4.3:+5383561 | MS.gene55742:CDS |
| GGATTTGAGAGGACTTCTTA+AGG | 0.406992 | 4.3:+5384860 | MS.gene55742:CDS |
| TCAGATATGCTTATGAAACT+TGG | 0.407331 | 4.3:-5384498 | None:intergenic |
| TTGAATCAGAATTGGAACTT+TGG | 0.414840 | 4.3:+5384892 | MS.gene55742:CDS |
| CGGTCCATAACTGTGCCTAA+TGG | 0.421374 | 4.3:-5384384 | None:intergenic |
| CAACGGTTCTTAATGTGCTT+CGG | 0.426255 | 4.3:-5384404 | None:intergenic |
| AACTGTGCCTAATGGATTTG+AGG | 0.440159 | 4.3:-5384376 | None:intergenic |
| GTGATGAGTGGTGGAGCAAC+TGG | 0.440195 | 4.3:+5383486 | MS.gene55742:CDS |
| CTTGCTGGCATAGTAATTTG+AGG | 0.441796 | 4.3:+5385105 | MS.gene55742:CDS |
| ACAAAGGATTAGATCATTTG+TGG | 0.445312 | 4.3:+5385037 | MS.gene55742:CDS |
| ATTAATTGTTTACAAAGTAA+TGG | 0.455659 | 4.3:+5384819 | MS.gene55742:CDS |
| TGTACATACCCTGGATAGTA+AGG | 0.457320 | 4.3:-5383570 | None:intergenic |
| TTGAGGTTAAGCCTTAAAAC+AGG | 0.470153 | 4.3:+5385122 | MS.gene55742:CDS |
| AAATCCATTAGGCACAGTTA+TGG | 0.479153 | 4.3:+5384380 | MS.gene55742:CDS |
| TCAAAAGACATGGGATTCCC+TGG | 0.480186 | 4.3:+5384585 | MS.gene55742:CDS |
| ACTGTGCCTAATGGATTTGA+GGG | 0.481893 | 4.3:-5384375 | None:intergenic |
| TCTGATGGTGTTATCCAAAT+GGG | 0.485730 | 4.3:+5383040 | MS.gene55742:CDS |
| CATCATCTTACTTTGATGGA+TGG | 0.487153 | 4.3:+5382978 | MS.gene55742:CDS |
| GATTCTGATGTTATCTTCTG+TGG | 0.488021 | 4.3:-5384331 | None:intergenic |
| AGAAGAACACTAAACCTTGC+TGG | 0.489355 | 4.3:+5385090 | MS.gene55742:CDS |
| CAGATATGCTTATGAAACTT+GGG | 0.491656 | 4.3:-5384497 | None:intergenic |
| GCAGATTTGATAGAGATTTG+AGG | 0.492142 | 4.3:+5384214 | MS.gene55742:intron |
| CATTTCATTGTTCTGAGCCA+GGG | 0.492750 | 4.3:+5384961 | MS.gene55742:CDS |
| ACCAGGATCTGCCAAACAAA+AGG | 0.493747 | 4.3:-5383526 | None:intergenic |
| AAACTATGTGAACGAGGTTA+CGG | 0.508352 | 4.3:-5384554 | None:intergenic |
| TCTTAGACAACAATTGAGGT+TGG | 0.527263 | 4.3:-5382928 | None:intergenic |
| ACAAATCCCTCAAATCCATT+AGG | 0.528896 | 4.3:+5384369 | MS.gene55742:CDS |
| GCTATCTTAGACAACAATTG+AGG | 0.540964 | 4.3:-5382932 | None:intergenic |
| GAAGATAACATCAGAATCAA+AGG | 0.542170 | 4.3:+5384336 | MS.gene55742:CDS |
| CCACTCATCACAATACGATC+AGG | 0.544520 | 4.3:-5383474 | None:intergenic |
| TCTAAGATAGCCACTGGTGA+TGG | 0.550202 | 4.3:+5382944 | MS.gene55742:CDS |
| CCACTCACATTTCTGAACTC+TGG | 0.552742 | 4.3:-5383317 | None:intergenic |
| TGCCTACTCCTTACTATCCA+GGG | 0.556150 | 4.3:+5383562 | MS.gene55742:CDS |
| TCCTTCTAGAGTACAAATTG+AGG | 0.558961 | 4.3:-5383246 | None:intergenic |
| CAAGTAGTGGCTTTAACAAG+AGG | 0.562133 | 4.3:-5385194 | None:intergenic |
| ATGTGCAAATTGCTTTACAA+AGG | 0.563606 | 4.3:+5385021 | MS.gene55742:CDS |
| GATTTGATAGAGATTTGAGG+TGG | 0.566695 | 4.3:+5384217 | MS.gene55742:intron |
| ATCTGCCAAACAAAAGGCAG+TGG | 0.571931 | 4.3:-5383520 | None:intergenic |
| CTCAAATTACTATGCCAGCA+AGG | 0.576441 | 4.3:-5385104 | None:intergenic |
| TTGTTGTCTAAGATAGCCAC+TGG | 0.576629 | 4.3:+5382938 | MS.gene55742:CDS |
| TGGAGCAACTGGAGCACATG+AGG | 0.576944 | 4.3:+5383497 | MS.gene55742:CDS |
| GGTTAAGCCTTAAAACAGGA+AGG | 0.579184 | 4.3:+5385126 | MS.gene55742:CDS |
| GTTAAGATTAATGTTTCACC+TGG | 0.580822 | 4.3:+5384933 | MS.gene55742:CDS |
| AATTGTTTACAAAGTAATGG+TGG | 0.584470 | 4.3:+5384822 | MS.gene55742:CDS |
| TTATACCAACTCTAAAACCA+GGG | 0.584528 | 4.3:-5384602 | None:intergenic |
| TACAGTCTTTCAAAAGACAT+GGG | 0.586545 | 4.3:+5384576 | MS.gene55742:CDS |
| GACTGAGGAAATGGAGAATG+AGG | 0.586929 | 4.3:-5385170 | None:intergenic |
| AAATTCATGTCTAGAACAAG+AGG | 0.590021 | 4.3:+5383432 | MS.gene55742:CDS |
| ATGCTAAATAATTCAAGTAG+TGG | 0.595412 | 4.3:-5385207 | None:intergenic |
| TTACAGTCTTTCAAAAGACA+TGG | 0.595760 | 4.3:+5384575 | MS.gene55742:CDS |
| TTCATTGATGAAATTTACAA+CGG | 0.599733 | 4.3:-5384421 | None:intergenic |
| TAGAGTGTGTTATGCTAACA+TGG | 0.616578 | 4.3:+5384989 | MS.gene55742:CDS |
| ATTATACCAACTCTAAAACC+AGG | 0.620538 | 4.3:-5384603 | None:intergenic |
| TTCTTGCTGAAAGTGCAAAG+AGG | 0.621704 | 4.3:+5384748 | MS.gene55742:CDS |
| TTCATTGTTCTGAGCCAGGG+TGG | 0.625682 | 4.3:+5384964 | MS.gene55742:CDS |
| CGATGAAATATACGCTGCAA+CGG | 0.630366 | 4.3:+5384464 | MS.gene55742:CDS |
| TGTGGTTCAGAATAATAAGG+AGG | 0.634977 | 4.3:+5385055 | MS.gene55742:CDS |
| GATCGTATTGTGATGAGTGG+TGG | 0.635293 | 4.3:+5383477 | MS.gene55742:CDS |
| GTGCAAAGAGGTTAGCACAA+AGG | 0.640437 | 4.3:+5384760 | MS.gene55742:CDS |
| TACCCTGGATAGTAAGGAGT+AGG | 0.653482 | 4.3:-5383564 | None:intergenic |
| CCTGATCGTATTGTGATGAG+TGG | 0.663504 | 4.3:+5383474 | MS.gene55742:CDS |
| GAACAATGAAATGAAACACC+AGG | 0.667249 | 4.3:-5384951 | None:intergenic |
| ATATGCTTATGAAACTTGGG+TGG | 0.669331 | 4.3:-5384494 | None:intergenic |
| TTCACCATGTCCATCACCAG+TGG | 0.671313 | 4.3:-5382954 | None:intergenic |
| GACTGTAAACTATGTGAACG+AGG | 0.673179 | 4.3:-5384560 | None:intergenic |
| TTTGTGTGGATGGATTTGAG+AGG | 0.680530 | 4.3:+5384849 | MS.gene55742:CDS |
| TTTGCGCGCACAATTTACAA+CGG | 0.684836 | 4.3:-5384643 | None:intergenic |
| ATAGCCACTGGTGATGGACA+TGG | 0.685257 | 4.3:+5382950 | MS.gene55742:CDS |
| GCTTTAACAAGAGGTGACTG+AGG | 0.694413 | 4.3:-5385185 | None:intergenic |
| TAACACACTCTAAACCACCC+TGG | 0.698750 | 4.3:-5384978 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTAATATGAATTTTTAC+AGG | + | chr4.3:5383401-5383420 | MS.gene55742:intron | 10.0% |
| !! | AAAAATAAAGATGAAGAAAA+GGG | - | chr4.3:5383613-5383632 | None:intergenic | 15.0% |
| !! | ATTAATTGTTTACAAAGTAA+TGG | + | chr4.3:5384819-5384838 | MS.gene55742:CDS | 15.0% |
| !! | GAATATTAAAGTAATAACTA+AGG | - | chr4.3:5383911-5383930 | None:intergenic | 15.0% |
| !! | AAAATAAAGATGAAGAAAAG+GGG | - | chr4.3:5383612-5383631 | None:intergenic | 20.0% |
| !! | AAAATAAATAATTGCTCTGA+TGG | - | chr4.3:5384055-5384074 | None:intergenic | 20.0% |
| !! | AGTACATAATTTCAAAGAAA+TGG | + | chr4.3:5383268-5383287 | MS.gene55742:CDS | 20.0% |
| !! | GAAAAATAAAGATGAAGAAA+AGG | - | chr4.3:5383614-5383633 | None:intergenic | 20.0% |
| !! | TAAACAATTAATTCCAACTT+TGG | - | chr4.3:5384811-5384830 | None:intergenic | 20.0% |
| !! | TAGAATATTATATGACTATG+TGG | - | chr4.3:5384145-5384164 | None:intergenic | 20.0% |
| !! | TTCATTGATGAAATTTACAA+CGG | - | chr4.3:5384424-5384443 | None:intergenic | 20.0% |
| !!! | AATGTTTTTGTTTTACTTTC+TGG | - | chr4.3:5384108-5384127 | None:intergenic | 20.0% |
| ! | AATTGTTTACAAAGTAATGG+TGG | + | chr4.3:5384822-5384841 | MS.gene55742:CDS | 25.0% |
| ! | ATTTGTGGTTCAGAATAATA+AGG | + | chr4.3:5385052-5385071 | MS.gene55742:CDS | 25.0% |
| ! | TAAAAATATACTGCATGGAT+AGG | - | chr4.3:5383143-5383162 | None:intergenic | 25.0% |
| !! | TCAAGTTTAAGATATGATGA+TGG | - | chr4.3:5383690-5383709 | None:intergenic | 25.0% |
| !! | TTTTTCATATGCATCTTCTA+AGG | - | chr4.3:5384310-5384329 | None:intergenic | 25.0% |
| !!! | AATTTTTGGTTGGATGAAAA+GGG | - | chr4.3:5383021-5383040 | None:intergenic | 25.0% |
| !!! | TTACTTTCTGGTTTGTATAT+AGG | - | chr4.3:5384096-5384115 | None:intergenic | 25.0% |
| ACAAAGGATTAGATCATTTG+TGG | + | chr4.3:5385037-5385056 | MS.gene55742:CDS | 30.0% | |
| AGAGCTAAAAATATACTGCA+TGG | - | chr4.3:5383148-5383167 | None:intergenic | 30.0% | |
| AGCTACATTTGAATCAGAAT+TGG | + | chr4.3:5384884-5384903 | MS.gene55742:CDS | 30.0% | |
| ATGTGCAAATTGCTTTACAA+AGG | + | chr4.3:5385021-5385040 | MS.gene55742:CDS | 30.0% | |
| CAGATATGCTTATGAAACTT+GGG | - | chr4.3:5384500-5384519 | None:intergenic | 30.0% | |
| CGTATATTTCATCGCTTATT+AGG | - | chr4.3:5384458-5384477 | None:intergenic | 30.0% | |
| GAAACATCATCTTACTTTGA+TGG | + | chr4.3:5382974-5382993 | MS.gene55742:CDS | 30.0% | |
| GAAGATAACATCAGAATCAA+AGG | + | chr4.3:5384336-5384355 | MS.gene55742:CDS | 30.0% | |
| GTTAAGATTAATGTTTCACC+TGG | + | chr4.3:5384933-5384952 | MS.gene55742:CDS | 30.0% | |
| TAATAACTAAGGCTGATTAG+TGG | - | chr4.3:5383900-5383919 | None:intergenic | 30.0% | |
| TACAGTCTTTCAAAAGACAT+GGG | + | chr4.3:5384576-5384595 | MS.gene55742:CDS | 30.0% | |
| TCAGAATAATAAGGAGGTTA+TGG | + | chr4.3:5385061-5385080 | MS.gene55742:CDS | 30.0% | |
| TCAGATATGCTTATGAAACT+TGG | - | chr4.3:5384501-5384520 | None:intergenic | 30.0% | |
| TTACAGTCTTTCAAAAGACA+TGG | + | chr4.3:5384575-5384594 | MS.gene55742:CDS | 30.0% | |
| TTGAATCAGAATTGGAACTT+TGG | + | chr4.3:5384892-5384911 | MS.gene55742:CDS | 30.0% | |
| ! | AAATTCATGTCTAGAACAAG+AGG | + | chr4.3:5383432-5383451 | MS.gene55742:CDS | 30.0% |
| ! | ATATGAATTTTTACAGGCTG+TGG | + | chr4.3:5383407-5383426 | MS.gene55742:intron | 30.0% |
| ! | CAAAGAAATGGCTAATTTTC+AGG | + | chr4.3:5383280-5383299 | MS.gene55742:CDS | 30.0% |
| ! | GATAACACCATCAGAATTTT+TGG | - | chr4.3:5383035-5383054 | None:intergenic | 30.0% |
| !! | ATTATACCAACTCTAAAACC+AGG | - | chr4.3:5384606-5384625 | None:intergenic | 30.0% |
| !! | GCTAATTTTCAGGATTATCA+TGG | + | chr4.3:5383290-5383309 | MS.gene55742:CDS | 30.0% |
| !! | TTATACCAACTCTAAAACCA+GGG | - | chr4.3:5384605-5384624 | None:intergenic | 30.0% |
| !!! | GAATTTTTGGTTGGATGAAA+AGG | - | chr4.3:5383022-5383041 | None:intergenic | 30.0% |
| AAACTATGTGAACGAGGTTA+CGG | - | chr4.3:5384557-5384576 | None:intergenic | 35.0% | |
| AAATCCATTAGGCACAGTTA+TGG | + | chr4.3:5384380-5384399 | MS.gene55742:CDS | 35.0% | |
| AACACAGACACAATACTTGA+TGG | + | chr4.3:5384689-5384708 | MS.gene55742:CDS | 35.0% | |
| ACAAATCCCTCAAATCCATT+AGG | + | chr4.3:5384369-5384388 | MS.gene55742:CDS | 35.0% | |
| ATATGCTTATGAAACTTGGG+TGG | - | chr4.3:5384497-5384516 | None:intergenic | 35.0% | |
| CAGGTATATATCAAGCTTTG+AGG | + | chr4.3:5383076-5383095 | MS.gene55742:intron | 35.0% | |
| CATCATCTTACTTTGATGGA+TGG | + | chr4.3:5382978-5382997 | MS.gene55742:CDS | 35.0% | |
| CATCCAACCAAAAATTCTGA+TGG | + | chr4.3:5383025-5383044 | MS.gene55742:CDS | 35.0% | |
| GAACAATGAAATGAAACACC+AGG | - | chr4.3:5384954-5384973 | None:intergenic | 35.0% | |
| GATTCTGATGTTATCTTCTG+TGG | - | chr4.3:5384334-5384353 | None:intergenic | 35.0% | |
| GATTTGATAGAGATTTGAGG+TGG | + | chr4.3:5384217-5384236 | MS.gene55742:intron | 35.0% | |
| GCAGATTTGATAGAGATTTG+AGG | + | chr4.3:5384214-5384233 | MS.gene55742:intron | 35.0% | |
| GCTATCTTAGACAACAATTG+AGG | - | chr4.3:5382935-5382954 | None:intergenic | 35.0% | |
| TAGAGTGTGTTATGCTAACA+TGG | + | chr4.3:5384989-5385008 | MS.gene55742:CDS | 35.0% | |
| TCACTGCACTGTAAAGTAAA+CGG | + | chr4.3:5383805-5383824 | MS.gene55742:intron | 35.0% | |
| TCTTAGACAACAATTGAGGT+TGG | - | chr4.3:5382931-5382950 | None:intergenic | 35.0% | |
| TGAATTGAATGTACATACCC+TGG | - | chr4.3:5383582-5383601 | None:intergenic | 35.0% | |
| TGTGGTTCAGAATAATAAGG+AGG | + | chr4.3:5385055-5385074 | MS.gene55742:CDS | 35.0% | |
| TTGAGGTTAAGCCTTAAAAC+AGG | + | chr4.3:5385122-5385141 | MS.gene55742:CDS | 35.0% | |
| TTTATAGTGCAATCAGCTAC+AGG | + | chr4.3:5383726-5383745 | MS.gene55742:intron | 35.0% | |
| ! | AGGTACAGAATTTTCACTAG+TGG | + | chr4.3:5384780-5384799 | MS.gene55742:CDS | 35.0% |
| ! | CATCAAACCTTCCTGTTTTA+AGG | - | chr4.3:5385136-5385155 | None:intergenic | 35.0% |
| !! | ACTAGTGGATTAACCAAAGT+TGG | + | chr4.3:5384795-5384814 | MS.gene55742:CDS | 35.0% |
| !! | AGGTAAAACATTTTCAAGCG+CGG | + | chr4.3:5383829-5383848 | MS.gene55742:intron | 35.0% |
| !! | CTGCTGATTTGGTTCAAAAT+TGG | + | chr4.3:5383204-5383223 | MS.gene55742:CDS | 35.0% |
| !! | TCCTTCTAGAGTACAAATTG+AGG | - | chr4.3:5383249-5383268 | None:intergenic | 35.0% |
| !! | TCTGATGGTGTTATCCAAAT+GGG | + | chr4.3:5383040-5383059 | MS.gene55742:CDS | 35.0% |
| !! | TTCTGATGGTGTTATCCAAA+TGG | + | chr4.3:5383039-5383058 | MS.gene55742:CDS | 35.0% |
| !!! | ACACCATCAGAATTTTTGGT+TGG | - | chr4.3:5383031-5383050 | None:intergenic | 35.0% |
| !!! | GGAACTGACTTTTTCAACAA+GGG | + | chr4.3:5383967-5383986 | MS.gene55742:intron | 35.0% |
| !!! | TGGAACTGACTTTTTCAACA+AGG | + | chr4.3:5383966-5383985 | MS.gene55742:intron | 35.0% |
| AGAAGAACACTAAACCTTGC+TGG | + | chr4.3:5385090-5385109 | MS.gene55742:CDS | 40.0% | |
| AGAGTACAAATTGAGGCTTC+TGG | - | chr4.3:5383242-5383261 | None:intergenic | 40.0% | |
| CAACGGTTCTTAATGTGCTT+CGG | - | chr4.3:5384407-5384426 | None:intergenic | 40.0% | |
| CGATGAAATATACGCTGCAA+CGG | + | chr4.3:5384464-5384483 | MS.gene55742:CDS | 40.0% | |
| CTCAAATTACTATGCCAGCA+AGG | - | chr4.3:5385107-5385126 | None:intergenic | 40.0% | |
| CTTGCTGGCATAGTAATTTG+AGG | + | chr4.3:5385105-5385124 | MS.gene55742:CDS | 40.0% | |
| GACTGTAAACTATGTGAACG+AGG | - | chr4.3:5384563-5384582 | None:intergenic | 40.0% | |
| GAGTACAAATTGAGGCTTCT+GGG | - | chr4.3:5383241-5383260 | None:intergenic | 40.0% | |
| GCCTCAATTTGTACTCTAGA+AGG | + | chr4.3:5383245-5383264 | MS.gene55742:CDS | 40.0% | |
| GGATTTGAGAGGACTTCTTA+AGG | + | chr4.3:5384860-5384879 | MS.gene55742:CDS | 40.0% | |
| GGTTAAGCCTTAAAACAGGA+AGG | + | chr4.3:5385126-5385145 | MS.gene55742:CDS | 40.0% | |
| TCCATCAAAATTCACTACCC+TGG | - | chr4.3:5383950-5383969 | None:intergenic | 40.0% | |
| TGTACATACCCTGGATAGTA+AGG | - | chr4.3:5383573-5383592 | None:intergenic | 40.0% | |
| TTTGCACTTTCGCAGATAAC+TGG | - | chr4.3:5384264-5384283 | None:intergenic | 40.0% | |
| TTTGCGCGCACAATTTACAA+CGG | - | chr4.3:5384646-5384665 | None:intergenic | 40.0% | |
| ! | CATTTCATTGTTCTGAGCCA+GGG | + | chr4.3:5384961-5384980 | MS.gene55742:CDS | 40.0% |
| ! | TCATTTCATTGTTCTGAGCC+AGG | + | chr4.3:5384960-5384979 | MS.gene55742:CDS | 40.0% |
| ! | TTCTTGCTGAAAGTGCAAAG+AGG | + | chr4.3:5384748-5384767 | MS.gene55742:CDS | 40.0% |
| ! | TTGTTGTCTAAGATAGCCAC+TGG | + | chr4.3:5382938-5382957 | MS.gene55742:CDS | 40.0% |
| ! | TTTCCAGCTTACTGCTGATT+TGG | + | chr4.3:5383193-5383212 | MS.gene55742:intron | 40.0% |
| ! | TTTGTGTGGATGGATTTGAG+AGG | + | chr4.3:5384849-5384868 | MS.gene55742:CDS | 40.0% |
| !! | AACTGTGCCTAATGGATTTG+AGG | - | chr4.3:5384379-5384398 | None:intergenic | 40.0% |
| !! | ACTGTGCCTAATGGATTTGA+GGG | - | chr4.3:5384378-5384397 | None:intergenic | 40.0% |
| !! | CAAGTAGTGGCTTTAACAAG+AGG | - | chr4.3:5385197-5385216 | None:intergenic | 40.0% |
| !!! | AGATCCTGGTGATGCTTTTT+TGG | + | chr4.3:5383539-5383558 | MS.gene55742:CDS | 40.0% |
| !!! | GTAATGGTGGACTTTTTGTG+TGG | + | chr4.3:5384835-5384854 | MS.gene55742:CDS | 40.0% |
| AATGGGTCTTGCAGAGAATC+AGG | + | chr4.3:5383057-5383076 | MS.gene55742:CDS | 45.0% | |
| ACAAGAGGTGACTGAGGAAA+TGG | - | chr4.3:5385182-5385201 | None:intergenic | 45.0% | |
| ACCAGGATCTGCCAAACAAA+AGG | - | chr4.3:5383529-5383548 | None:intergenic | 45.0% | |
| ATCTGCCAAACAAAAGGCAG+TGG | - | chr4.3:5383523-5383542 | None:intergenic | 45.0% | |
| CCACTCACATTTCTGAACTC+TGG | - | chr4.3:5383320-5383339 | None:intergenic | 45.0% | |
| CCACTCATCACAATACGATC+AGG | - | chr4.3:5383477-5383496 | None:intergenic | 45.0% | |
| CCAGAGTTCAGAAATGTGAG+TGG | + | chr4.3:5383317-5383336 | MS.gene55742:intron | 45.0% | |
| CCAGTCATCATTAGAAGCCA+GGG | + | chr4.3:5383930-5383949 | MS.gene55742:intron | 45.0% | |
| CCTGATCGTATTGTGATGAG+TGG | + | chr4.3:5383474-5383493 | MS.gene55742:CDS | 45.0% | |
| GAACCAAATCAGCAGTAAGC+TGG | - | chr4.3:5383199-5383218 | None:intergenic | 45.0% | |
| GACTGAGGAAATGGAGAATG+AGG | - | chr4.3:5385173-5385192 | None:intergenic | 45.0% | |
| GATCGTATTGTGATGAGTGG+TGG | + | chr4.3:5383477-5383496 | MS.gene55742:CDS | 45.0% | |
| GATTCTCTGCAAGACCCATT+TGG | - | chr4.3:5383057-5383076 | None:intergenic | 45.0% | |
| GCTTTAACAAGAGGTGACTG+AGG | - | chr4.3:5385188-5385207 | None:intergenic | 45.0% | |
| GTGCAAAGAGGTTAGCACAA+AGG | + | chr4.3:5384760-5384779 | MS.gene55742:CDS | 45.0% | |
| TAACACACTCTAAACCACCC+TGG | - | chr4.3:5384981-5385000 | None:intergenic | 45.0% | |
| TACCCTGGATAGTAAGGAGT+AGG | - | chr4.3:5383567-5383586 | None:intergenic | 45.0% | |
| TCAAAAGACATGGGATTCCC+TGG | + | chr4.3:5384585-5384604 | MS.gene55742:CDS | 45.0% | |
| TCCAGTCATCATTAGAAGCC+AGG | + | chr4.3:5383929-5383948 | MS.gene55742:intron | 45.0% | |
| TGCACTGTAAAGTAAACGGC+AGG | + | chr4.3:5383809-5383828 | MS.gene55742:intron | 45.0% | |
| TGCCTACTCCTTACTATCCA+GGG | + | chr4.3:5383562-5383581 | MS.gene55742:CDS | 45.0% | |
| ! | AGAGATTTGAGGTGGAGAAC+AGG | + | chr4.3:5384225-5384244 | MS.gene55742:CDS | 45.0% |
| ! | GCCAGGGTAGTGAATTTTGA+TGG | + | chr4.3:5383946-5383965 | MS.gene55742:intron | 45.0% |
| ! | TCTAAGATAGCCACTGGTGA+TGG | + | chr4.3:5382944-5382963 | MS.gene55742:CDS | 45.0% |
| !!! | GGATTCCCTGGTTTTAGAGT+TGG | + | chr4.3:5384597-5384616 | MS.gene55742:CDS | 45.0% |
| !!! | TGGTGGACTTTTTGTGTGGA+TGG | + | chr4.3:5384839-5384858 | MS.gene55742:CDS | 45.0% |
| !!! | TAATTGATAATATTTATAAT+TGG | - | chr4.3:5383636-5383655 | None:intergenic | 5.0% |
| CCCTGGCTTCTAATGATGAC+TGG | - | chr4.3:5383933-5383952 | None:intergenic | 50.0% | |
| CGGTCCATAACTGTGCCTAA+TGG | - | chr4.3:5384387-5384406 | None:intergenic | 50.0% | |
| GTGCCTACTCCTTACTATCC+AGG | + | chr4.3:5383561-5383580 | MS.gene55742:CDS | 50.0% | |
| TTCACCATGTCCATCACCAG+TGG | - | chr4.3:5382957-5382976 | None:intergenic | 50.0% | |
| ! | GCGCGCAAAATGTCGAGTTT+TGG | + | chr4.3:5384657-5384676 | MS.gene55742:CDS | 50.0% |
| ! | TGAGGCCACTGCCTTTTGTT+TGG | + | chr4.3:5383515-5383534 | MS.gene55742:CDS | 50.0% |
| ! | TTCATTGTTCTGAGCCAGGG+TGG | + | chr4.3:5384964-5384983 | MS.gene55742:CDS | 50.0% |
| !! | ATAGCCACTGGTGATGGACA+TGG | + | chr4.3:5382950-5382969 | MS.gene55742:CDS | 50.0% |
| !! | GCCTTTTGTTTGGCAGATCC+TGG | + | chr4.3:5383525-5383544 | MS.gene55742:CDS | 50.0% |
| !! | GGCACCAAAAAAGCATCACC+AGG | - | chr4.3:5383546-5383565 | None:intergenic | 50.0% |
| CAGTGCAGTGAGCTGCAAGT+CGG | - | chr4.3:5383796-5383815 | None:intergenic | 55.0% | |
| TGGAGCAACTGGAGCACATG+AGG | + | chr4.3:5383497-5383516 | MS.gene55742:CDS | 55.0% | |
| ! | GTGATGAGTGGTGGAGCAAC+TGG | + | chr4.3:5383486-5383505 | MS.gene55742:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 5382908 | 5385217 | 5382908 | ID=MS.gene55742 |
| chr4.3 | mRNA | 5382908 | 5385217 | 5382908 | ID=MS.gene55742.t1;Parent=MS.gene55742 |
| chr4.3 | exon | 5382908 | 5383078 | 5382908 | ID=MS.gene55742.t1.exon1;Parent=MS.gene55742.t1 |
| chr4.3 | CDS | 5382908 | 5383078 | 5382908 | ID=cds.MS.gene55742.t1;Parent=MS.gene55742.t1 |
| chr4.3 | exon | 5383200 | 5383331 | 5383200 | ID=MS.gene55742.t1.exon2;Parent=MS.gene55742.t1 |
| chr4.3 | CDS | 5383200 | 5383331 | 5383200 | ID=cds.MS.gene55742.t1;Parent=MS.gene55742.t1 |
| chr4.3 | exon | 5383423 | 5383583 | 5383423 | ID=MS.gene55742.t1.exon3;Parent=MS.gene55742.t1 |
| chr4.3 | CDS | 5383423 | 5383583 | 5383423 | ID=cds.MS.gene55742.t1;Parent=MS.gene55742.t1 |
| chr4.3 | exon | 5384218 | 5385217 | 5384218 | ID=MS.gene55742.t1.exon4;Parent=MS.gene55742.t1 |
| chr4.3 | CDS | 5384218 | 5385217 | 5384218 | ID=cds.MS.gene55742.t1;Parent=MS.gene55742.t1 |
| Gene Sequence |
| Protein sequence |
