Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43193.t1 | XP_013447749.1 | 87.7 | 204 | 24 | 1 | 1 | 204 | 1 | 203 | 7.70E-90 | 340.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43193.t1 | A0A072TWG4 | 87.7 | 204 | 24 | 1 | 1 | 204 | 1 | 203 | 5.5e-90 | 340.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050404 | MS.gene43193 | 0.805049 | 1.61E-49 | -1.69E-46 |
| MS.gene052253 | MS.gene43193 | 0.81576 | 7.84E-52 | -1.69E-46 |
| MS.gene052340 | MS.gene43193 | 0.807139 | 5.85E-50 | -1.69E-46 |
| MS.gene059692 | MS.gene43193 | 0.821037 | 5.00E-53 | -1.69E-46 |
| MS.gene059695 | MS.gene43193 | 0.81051 | 1.11E-50 | -1.69E-46 |
| MS.gene059894 | MS.gene43193 | 0.801335 | 9.45E-49 | -1.69E-46 |
| MS.gene061049 | MS.gene43193 | 0.815598 | 8.52E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43193.t1 | MTR_7g018880 | 93.171 | 205 | 13 | 1 | 1 | 205 | 1 | 204 | 1.35e-141 | 395 |
| MS.gene43193.t1 | MTR_5g010050 | 31.496 | 127 | 87 | 0 | 78 | 204 | 82 | 208 | 6.77e-23 | 93.6 |
| MS.gene43193.t1 | MTR_3g090440 | 27.368 | 190 | 126 | 3 | 15 | 204 | 34 | 211 | 3.17e-22 | 91.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43193.t1 | AT1G71480 | 73.643 | 129 | 34 | 0 | 78 | 206 | 70 | 198 | 7.05e-68 | 208 |
| MS.gene43193.t1 | AT1G71480 | 74.312 | 109 | 28 | 0 | 78 | 186 | 70 | 178 | 8.33e-56 | 176 |
| MS.gene43193.t1 | AT1G71480 | 68.293 | 82 | 26 | 0 | 78 | 159 | 70 | 151 | 1.04e-34 | 121 |
| MS.gene43193.t1 | AT5G41470 | 38.583 | 127 | 78 | 0 | 78 | 204 | 74 | 200 | 1.67e-28 | 108 |
Find 46 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGGGGTGATTTGGCATTT+AGG | 0.201147 | 7.2:-78681628 | MS.gene43193:intron |
| CATCATCAGTTGGGGTGATT+TGG | 0.266633 | 7.2:-78681636 | MS.gene43193:CDS |
| GCATCCCCTGGCTTGATTGC+AGG | 0.284009 | 7.2:+78679389 | None:intergenic |
| GTCTTTCCCCGTCCCTTTGT+AGG | 0.301901 | 7.2:-78681855 | MS.gene43193:CDS |
| AGTGGAGCATAAAATGTTTA+TGG | 0.309641 | 7.2:-78682201 | None:intergenic |
| GTTACTAAGGTTGTTGGAAT+TGG | 0.326378 | 7.2:-78682083 | MS.gene43193:CDS |
| AACAAACTGCAGATCCTTGC+TGG | 0.380904 | 7.2:+78681684 | None:intergenic |
| AATTCAGTTACTAAGGTTGT+TGG | 0.421747 | 7.2:-78682089 | MS.gene43193:CDS |
| CGGAGGATTCATCATCAGTT+GGG | 0.435643 | 7.2:-78681645 | MS.gene43193:CDS |
| ACAACCTTAGTAACTGAATT+CGG | 0.437504 | 7.2:+78682092 | None:intergenic |
| AAACTGCATCCTTTGCTAAA+GGG | 0.439731 | 7.2:+78680945 | None:intergenic |
| CAAGCCAGGGGATGCAACTT+TGG | 0.445702 | 7.2:-78679381 | MS.gene43193:CDS |
| CATCCTTTGCTAAAGGGAAA+AGG | 0.457962 | 7.2:+78680951 | None:intergenic |
| AAAACTGCATCCTTTGCTAA+AGG | 0.460379 | 7.2:+78680944 | None:intergenic |
| TATCGTTTGGAAGTGATCAA+TGG | 0.466251 | 7.2:-78680921 | MS.gene43193:CDS |
| ACTCAATAGCATCACTGATA+AGG | 0.473965 | 7.2:+78679345 | None:intergenic |
| TACTCCGAATTCAGTTACTA+AGG | 0.474204 | 7.2:-78682096 | MS.gene43193:CDS |
| CTCTGAAAATTGTGTGTATG+AGG | 0.478927 | 7.2:-78681883 | MS.gene43193:CDS |
| TATGTGACAAAGAAGTCAAA+GGG | 0.489975 | 7.2:+78682129 | None:intergenic |
| GTTGAACCTGCAATCAAGCC+AGG | 0.510194 | 7.2:-78679395 | MS.gene43193:CDS |
| AGTAGTGAGAAATTTCTATG+AGG | 0.519129 | 7.2:-78681946 | MS.gene43193:CDS |
| CCGTCCCTTTGTAGGTCGTA+AGG | 0.521711 | 7.2:-78681847 | MS.gene43193:intron |
| TGTTATTGATGATTTGTCTA+CGG | 0.524833 | 7.2:-78681665 | MS.gene43193:CDS |
| CATACCAAAGTTGCATCCCC+TGG | 0.535620 | 7.2:+78679377 | None:intergenic |
| GTAGTGAGAAATTTCTATGA+GGG | 0.544610 | 7.2:-78681945 | MS.gene43193:CDS |
| CTATGTGACAAAGAAGTCAA+AGG | 0.545383 | 7.2:+78682128 | None:intergenic |
| ACGGAGGATTCATCATCAGT+TGG | 0.548523 | 7.2:-78681646 | MS.gene43193:CDS |
| CTTACGACCTACAAAGGGAC+GGG | 0.552514 | 7.2:+78681848 | None:intergenic |
| AGTTACCTTACGACCTACAA+AGG | 0.560625 | 7.2:+78681842 | None:intergenic |
| CACACACTTTGATGATAACA+AGG | 0.561817 | 7.2:-78681988 | MS.gene43193:CDS |
| TTTATGAATGCAGAATGGAA+AGG | 0.576026 | 7.2:-78680978 | MS.gene43193:intron |
| TCTGATAAACAGATATGGAC+GGG | 0.577054 | 7.2:-78679423 | MS.gene43193:intron |
| GTTACCTTACGACCTACAAA+GGG | 0.584034 | 7.2:+78681843 | None:intergenic |
| TTGAACCTGCAATCAAGCCA+GGG | 0.605419 | 7.2:-78679394 | MS.gene43193:CDS |
| TTCTGATAAACAGATATGGA+CGG | 0.605638 | 7.2:-78679424 | MS.gene43193:intron |
| GGGAATCAATGCACATGATG+TGG | 0.616754 | 7.2:-78681925 | MS.gene43193:CDS |
| GTTCACTGATTCTACCAGCA+AGG | 0.619438 | 7.2:-78681698 | MS.gene43193:CDS |
| TATTGATGATTTGTCTACGG+AGG | 0.632550 | 7.2:-78681662 | MS.gene43193:CDS |
| CAAAGGGACGGGGAAAGACA+AGG | 0.637134 | 7.2:+78681859 | None:intergenic |
| CTTGTTATCATCAAAGTGTG+TGG | 0.642662 | 7.2:+78681989 | None:intergenic |
| CCTTACGACCTACAAAGGGA+CGG | 0.643834 | 7.2:+78681847 | None:intergenic |
| GGAGGATTCATCATCAGTTG+GGG | 0.656119 | 7.2:-78681644 | MS.gene43193:CDS |
| TTACGACCTACAAAGGGACG+GGG | 0.679138 | 7.2:+78681849 | None:intergenic |
| AATATTACAGTTAATAACAG+TGG | 0.693819 | 7.2:-78682038 | MS.gene43193:CDS |
| TGAACCTGCAATCAAGCCAG+GGG | 0.698730 | 7.2:-78679393 | MS.gene43193:CDS |
| ATGTGACAAAGAAGTCAAAG+GGG | 0.705440 | 7.2:+78682130 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAATTAAGACATAAATT+TGG | + | chr7.2:78679755-78679774 | None:intergenic | 10.0% |
| !! | AACTATTTAAATCTAAGTAT+GGG | - | chr7.2:78680819-78680838 | MS.gene43193:intron | 15.0% |
| !!! | AATTATTATTACTGTTTTAC+AGG | - | chr7.2:78679767-78679786 | MS.gene43193:intron | 15.0% |
| !!! | ATTGACATTTTTATTTTTGA+GGG | - | chr7.2:78680403-78680422 | MS.gene43193:intron | 15.0% |
| !!! | TATTGACATTTTTATTTTTG+AGG | - | chr7.2:78680402-78680421 | MS.gene43193:intron | 15.0% |
| !! | AAACTACTTACTACTAAATA+AGG | + | chr7.2:78680078-78680097 | None:intergenic | 20.0% |
| !! | AACTACTTACTACTAAATAA+GGG | + | chr7.2:78680077-78680096 | None:intergenic | 20.0% |
| !! | AATATTACAGTTAATAACAG+TGG | - | chr7.2:78679472-78679491 | MS.gene43193:intron | 20.0% |
| !! | CTAATTTACAATGACATTAT+AGG | + | chr7.2:78679954-78679973 | None:intergenic | 20.0% |
| !! | GAACTATTTAAATCTAAGTA+TGG | - | chr7.2:78680818-78680837 | MS.gene43193:intron | 20.0% |
| !! | GGAAGACTATAAAAATTATT+TGG | - | chr7.2:78681075-78681094 | MS.gene43193:intron | 20.0% |
| !!! | ATATTTCTGATAAACAGATA+TGG | - | chr7.2:78682082-78682101 | MS.gene43193:CDS | 20.0% |
| !!! | ATTTAGTAGTAAGTAGTTTT+TGG | - | chr7.2:78680079-78680098 | MS.gene43193:intron | 20.0% |
| !!! | GTATTTATTCTATTTCTCAA+TGG | - | chr7.2:78681539-78681558 | MS.gene43193:intron | 20.0% |
| !!! | TTGACATTTTTATTTTTGAG+GGG | - | chr7.2:78680404-78680423 | MS.gene43193:intron | 20.0% |
| ! | AAATCAAACCTTCAATAACA+AGG | + | chr7.2:78681251-78681270 | None:intergenic | 25.0% |
| ! | AATCAAACCTTCAATAACAA+GGG | + | chr7.2:78681250-78681269 | None:intergenic | 25.0% |
| ! | ACTACTTACTACTAAATAAG+GGG | + | chr7.2:78680076-78680095 | None:intergenic | 25.0% |
| ! | ATTTGTTTATGAATGCAGAA+TGG | - | chr7.2:78680527-78680546 | MS.gene43193:intron | 25.0% |
| ! | CTTGGAAAACTATACAAAAT+CGG | - | chr7.2:78681132-78681151 | MS.gene43193:intron | 25.0% |
| ! | GAATTCTATATTACTTGTCA+AGG | - | chr7.2:78679918-78679937 | MS.gene43193:intron | 25.0% |
| !! | AAAGAAACTTCAAGTTAAAC+TGG | + | chr7.2:78681962-78681981 | None:intergenic | 25.0% |
| !! | AAGAAACTTCAAGTTAAACT+GGG | + | chr7.2:78681961-78681980 | None:intergenic | 25.0% |
| !! | AATTACTAAGCATTTGAGTT+GGG | - | chr7.2:78681917-78681936 | MS.gene43193:CDS | 25.0% |
| !! | TCAATATGATGAGTTTTCAT+TGG | + | chr7.2:78680388-78680407 | None:intergenic | 25.0% |
| !! | TGTTATTGATGATTTGTCTA+CGG | - | chr7.2:78679845-78679864 | MS.gene43193:intron | 25.0% |
| !! | TTTACTTTGTAACGACATTT+TGG | - | chr7.2:78680451-78680470 | MS.gene43193:intron | 25.0% |
| !!! | AAAGTATTGGATTCTTTTTG+AGG | - | chr7.2:78680484-78680503 | MS.gene43193:intron | 25.0% |
| AACTGTTATTGAGATACTAG+TGG | + | chr7.2:78680256-78680275 | None:intergenic | 30.0% | |
| AATTCAGTTACTAAGGTTGT+TGG | - | chr7.2:78679421-78679440 | MS.gene43193:intron | 30.0% | |
| ACAACCTTAGTAACTGAATT+CGG | + | chr7.2:78679421-78679440 | None:intergenic | 30.0% | |
| AGTAGTGAGAAATTTCTATG+AGG | - | chr7.2:78679564-78679583 | MS.gene43193:intron | 30.0% | |
| AGTTTCTTTACTCAGTTTAG+TGG | - | chr7.2:78681973-78681992 | MS.gene43193:CDS | 30.0% | |
| CAAAGAGCGGAATAAATAAT+CGG | + | chr7.2:78680129-78680148 | None:intergenic | 30.0% | |
| CAATTACTAAGCATTTGAGT+TGG | - | chr7.2:78681916-78681935 | MS.gene43193:CDS | 30.0% | |
| GAAGAAAAAGAGACAGAAAA+TGG | - | chr7.2:78679449-78679468 | MS.gene43193:intron | 30.0% | |
| GATTGAGCTAAATTTGTAAG+TGG | - | chr7.2:78681383-78681402 | MS.gene43193:intron | 30.0% | |
| GTAAGTCCAATATGTATAGA+TGG | + | chr7.2:78680359-78680378 | None:intergenic | 30.0% | |
| GTAGTGAGAAATTTCTATGA+GGG | - | chr7.2:78679565-78679584 | MS.gene43193:intron | 30.0% | |
| TAAATAATCGGTCAGAAGAT+TGG | + | chr7.2:78680117-78680136 | None:intergenic | 30.0% | |
| TAGATGCTAAAAACTGAGAA+AGG | - | chr7.2:78680782-78680801 | MS.gene43193:intron | 30.0% | |
| TATGTGACAAAGAAGTCAAA+GGG | + | chr7.2:78679384-78679403 | None:intergenic | 30.0% | |
| TGGAAATGATTGCAAAGTAT+TGG | - | chr7.2:78680471-78680490 | MS.gene43193:intron | 30.0% | |
| TTCTGATAAACAGATATGGA+CGG | - | chr7.2:78682086-78682105 | MS.gene43193:CDS | 30.0% | |
| TTCTGTATGCGTTAATTCAA+TGG | - | chr7.2:78681728-78681747 | MS.gene43193:intron | 30.0% | |
| TTTATGAATGCAGAATGGAA+AGG | - | chr7.2:78680532-78680551 | MS.gene43193:intron | 30.0% | |
| TTTGATCCGAAATAGCAAAA+TGG | - | chr7.2:78681280-78681299 | MS.gene43193:intron | 30.0% | |
| ! | ACTTGTTTAAATTTTCCAGG+TGG | - | chr7.2:78681343-78681362 | MS.gene43193:intron | 30.0% |
| ! | CAAGTGATTTTTCATGACAA+AGG | - | chr7.2:78681442-78681461 | MS.gene43193:intron | 30.0% |
| ! | CTGTACTGTTTTATCAGTTA+AGG | - | chr7.2:78681754-78681773 | MS.gene43193:intron | 30.0% |
| ! | GTCACTTGTTTAAATTTTCC+AGG | - | chr7.2:78681340-78681359 | MS.gene43193:intron | 30.0% |
| !! | GATTTTGGCAGAATAGTTTA+TGG | - | chr7.2:78681782-78681801 | MS.gene43193:intron | 30.0% |
| AAAACTGCATCCTTTGCTAA+AGG | + | chr7.2:78680569-78680588 | None:intergenic | 35.0% | |
| AAACTGCATCCTTTGCTAAA+GGG | + | chr7.2:78680568-78680587 | None:intergenic | 35.0% | |
| AAGATAGAGAGGTTAGAGAA+GGG | - | chr7.2:78680896-78680915 | MS.gene43193:intron | 35.0% | |
| AAGATCAGTGTGTTTAGTCT+TGG | - | chr7.2:78680949-78680968 | MS.gene43193:CDS | 35.0% | |
| AATAGCAAAATGGTTGGGTT+TGG | - | chr7.2:78681290-78681309 | MS.gene43193:intron | 35.0% | |
| ACTCAATAGCATCACTGATA+AGG | + | chr7.2:78682168-78682187 | None:intergenic | 35.0% | |
| AGTCCAATATGTATAGATGG+AGG | + | chr7.2:78680356-78680375 | None:intergenic | 35.0% | |
| ATCCGAAATAGCAAAATGGT+TGG | - | chr7.2:78681284-78681303 | MS.gene43193:intron | 35.0% | |
| ATCTAAGTATGGGATTGTTG+AGG | - | chr7.2:78680829-78680848 | MS.gene43193:intron | 35.0% | |
| ATGTGACAAAGAAGTCAAAG+GGG | + | chr7.2:78679383-78679402 | None:intergenic | 35.0% | |
| CAATTATTCCACGCTTAACA+AGG | + | chr7.2:78681175-78681194 | None:intergenic | 35.0% | |
| CTATGTGACAAAGAAGTCAA+AGG | + | chr7.2:78679385-78679404 | None:intergenic | 35.0% | |
| CTCAATAACAGTTCTTCATG+CGG | - | chr7.2:78680263-78680282 | MS.gene43193:intron | 35.0% | |
| CTTGTTAAGCGTGGAATAAT+TGG | - | chr7.2:78681173-78681192 | MS.gene43193:intron | 35.0% | |
| GTTACTAAGGTTGTTGGAAT+TGG | - | chr7.2:78679427-78679446 | MS.gene43193:intron | 35.0% | |
| TACTCCGAATTCAGTTACTA+AGG | - | chr7.2:78679414-78679433 | MS.gene43193:CDS | 35.0% | |
| TAGACTGTTTCCATTATCGA+TGG | - | chr7.2:78681042-78681061 | MS.gene43193:intron | 35.0% | |
| TATCGTTTGGAAGTGATCAA+TGG | - | chr7.2:78680589-78680608 | MS.gene43193:intron | 35.0% | |
| TCAACTTTGTGTTTCAATGC+AGG | + | chr7.2:78679989-78680008 | None:intergenic | 35.0% | |
| TCCGAAATAGCAAAATGGTT+GGG | - | chr7.2:78681285-78681304 | MS.gene43193:intron | 35.0% | |
| TCTAAGTATGGGATTGTTGA+GGG | - | chr7.2:78680830-78680849 | MS.gene43193:intron | 35.0% | |
| TCTGATAAACAGATATGGAC+GGG | - | chr7.2:78682087-78682106 | MS.gene43193:CDS | 35.0% | |
| TGCTAAAAACTGAGAAAGGT+AGG | - | chr7.2:78680786-78680805 | MS.gene43193:intron | 35.0% | |
| ! | AGGATGCAGTTTTTATCGTT+TGG | - | chr7.2:78680576-78680595 | MS.gene43193:intron | 35.0% |
| ! | ATGGGAGATATACGCTATTT+TGG | - | chr7.2:78680975-78680994 | MS.gene43193:intron | 35.0% |
| ! | ATGGTTCACTAGTTTAGGTT+TGG | - | chr7.2:78681558-78681577 | MS.gene43193:intron | 35.0% |
| ! | CACACACTTTGATGATAACA+AGG | - | chr7.2:78679522-78679541 | MS.gene43193:intron | 35.0% |
| ! | CTCTGAAAATTGTGTGTATG+AGG | - | chr7.2:78679627-78679646 | MS.gene43193:intron | 35.0% |
| ! | CTTGTTATCATCAAAGTGTG+TGG | + | chr7.2:78679524-78679543 | None:intergenic | 35.0% |
| ! | GTGTTTCTTTGCTATATAGC+AGG | - | chr7.2:78681890-78681909 | MS.gene43193:CDS | 35.0% |
| ! | TATTGATGATTTGTCTACGG+AGG | - | chr7.2:78679848-78679867 | MS.gene43193:intron | 35.0% |
| ! | TCAGTTAAGGTTGCAGATTT+TGG | - | chr7.2:78681767-78681786 | MS.gene43193:intron | 35.0% |
| ! | TCTCAATGGTTCACTAGTTT+AGG | - | chr7.2:78681553-78681572 | MS.gene43193:intron | 35.0% |
| !! | AAATTTTCCAGGTGGATTCA+AGG | - | chr7.2:78681351-78681370 | MS.gene43193:intron | 35.0% |
| !! | AGTTTAGGTTTGGTGTGTAA+TGG | - | chr7.2:78681568-78681587 | MS.gene43193:intron | 35.0% |
| !! | ATCTGATTGGGCCATTTTAT+TGG | - | chr7.2:78680324-78680343 | MS.gene43193:intron | 35.0% |
| !! | TCTGATTGGGCCATTTTATT+GGG | - | chr7.2:78680325-78680344 | MS.gene43193:intron | 35.0% |
| !! | TGTGTTTAGTCTTGGATGAT+GGG | - | chr7.2:78680957-78680976 | MS.gene43193:CDS | 35.0% |
| !!! | ACCCAACCATTTTGCTATTT+CGG | + | chr7.2:78681289-78681308 | None:intergenic | 35.0% |
| AAAATGGTTGGGTTTGGAAG+GGG | - | chr7.2:78681296-78681315 | MS.gene43193:intron | 40.0% | |
| AAACTGAGAAAGGTAGGTTG+TGG | - | chr7.2:78680792-78680811 | MS.gene43193:intron | 40.0% | |
| ACAAAATCGGTTACCAGCAA+AGG | - | chr7.2:78681145-78681164 | MS.gene43193:intron | 40.0% | |
| ACACTCATTTGTGTAGTGCA+GGG | - | chr7.2:78681201-78681220 | MS.gene43193:intron | 40.0% | |
| ACAGAGGGAAAATTGCTTGA+AGG | + | chr7.2:78681825-78681844 | None:intergenic | 40.0% | |
| ACTTTGACGTCCATCGATAA+TGG | + | chr7.2:78681055-78681074 | None:intergenic | 40.0% | |
| AGGACACTCAAAACAACAGA+GGG | + | chr7.2:78681840-78681859 | None:intergenic | 40.0% | |
| AGTTACCTTACGACCTACAA+AGG | + | chr7.2:78679671-78679690 | None:intergenic | 40.0% | |
| ATTATCGATGGACGTCAAAG+TGG | - | chr7.2:78681054-78681073 | MS.gene43193:intron | 40.0% | |
| CAAAATGGTTGGGTTTGGAA+GGG | - | chr7.2:78681295-78681314 | MS.gene43193:intron | 40.0% | |
| CATATATACCTAGAGACGCA+GGG | + | chr7.2:78681624-78681643 | None:intergenic | 40.0% | |
| CATCCTTTGCTAAAGGGAAA+AGG | + | chr7.2:78680562-78680581 | None:intergenic | 40.0% | |
| CTAAAATGCTGCCATGGAAT+TGG | - | chr7.2:78681494-78681513 | MS.gene43193:intron | 40.0% | |
| GAAGATAGAGAGGTTAGAGA+AGG | - | chr7.2:78680895-78680914 | MS.gene43193:intron | 40.0% | |
| GCATGTGATCAGTCATTTGA+AGG | - | chr7.2:78681097-78681116 | MS.gene43193:intron | 40.0% | |
| GGGATTGTTGAGGGTTAAAT+CGG | - | chr7.2:78680839-78680858 | MS.gene43193:intron | 40.0% | |
| GTTACCTTACGACCTACAAA+GGG | + | chr7.2:78679670-78679689 | None:intergenic | 40.0% | |
| TAAGCGTGGAATAATTGGAG+AGG | - | chr7.2:78681178-78681197 | MS.gene43193:intron | 40.0% | |
| TAGTGGAGCTCTTATCTTCT+AGG | + | chr7.2:78680239-78680258 | None:intergenic | 40.0% | |
| TGCTGTTGAGGTTGTAATCA+GGG | - | chr7.2:78680149-78680168 | MS.gene43193:intron | 40.0% | |
| TGGCCTCCATCTATACATAT+TGG | - | chr7.2:78680350-78680369 | MS.gene43193:intron | 40.0% | |
| TGTGATCAGTCATTTGAAGG+TGG | - | chr7.2:78681100-78681119 | MS.gene43193:intron | 40.0% | |
| TGTTGAGGGTTAAATCGGAA+GGG | - | chr7.2:78680844-78680863 | MS.gene43193:intron | 40.0% | |
| TTAACAAGGTTGTCCTTTGC+TGG | + | chr7.2:78681161-78681180 | None:intergenic | 40.0% | |
| TTAACATGACGAGAGTAGCA+TGG | - | chr7.2:78680657-78680676 | MS.gene43193:intron | 40.0% | |
| TTGTTGAGGGTTAAATCGGA+AGG | - | chr7.2:78680843-78680862 | MS.gene43193:intron | 40.0% | |
| ! | AACAGTCTAAAATGCTGCCA+TGG | - | chr7.2:78681488-78681507 | MS.gene43193:intron | 40.0% |
| ! | AAGCCTTTTCCCTTTAGCAA+AGG | - | chr7.2:78680556-78680575 | MS.gene43193:intron | 40.0% |
| ! | ACAAAGTTGATCACCTTAGC+TGG | - | chr7.2:78679999-78680018 | MS.gene43193:intron | 40.0% |
| ! | TTGATTCCTAGCTCTCCAAA+CGG | + | chr7.2:78681425-78681444 | None:intergenic | 40.0% |
| !! | ACAACCACTATAGCGGATAT+CGG | + | chr7.2:78680196-78680215 | None:intergenic | 40.0% |
| !! | GTGTGTTTAGTCTTGGATGA+TGG | - | chr7.2:78680956-78680975 | MS.gene43193:CDS | 40.0% |
| !! | TGTTTTGAGTGTCCTGGTAT+TGG | - | chr7.2:78681845-78681864 | MS.gene43193:intron | 40.0% |
| !! | TTAGCTTGCAACCAATTCCA+TGG | + | chr7.2:78681508-78681527 | None:intergenic | 40.0% |
| !! | TTTGCTCTGAAACTTGTGCT+TGG | - | chr7.2:78680694-78680713 | MS.gene43193:intron | 40.0% |
| AACAAACTGCAGATCCTTGC+TGG | + | chr7.2:78679829-78679848 | None:intergenic | 45.0% | |
| AACCTCAACAGCACAAAGAG+CGG | + | chr7.2:78680142-78680161 | None:intergenic | 45.0% | |
| AAGGACAACCTTGTTAAGCG+TGG | - | chr7.2:78681164-78681183 | MS.gene43193:intron | 45.0% | |
| ACGGAGGATTCATCATCAGT+TGG | - | chr7.2:78679864-78679883 | MS.gene43193:intron | 45.0% | |
| AGACGCAGGGAAAAAAACAG+TGG | + | chr7.2:78681611-78681630 | None:intergenic | 45.0% | |
| AGGGTTAAATCGGAAGGGTT+GGG | - | chr7.2:78680849-78680868 | MS.gene43193:intron | 45.0% | |
| CAAGTGCACAACCACTATAG+CGG | + | chr7.2:78680203-78680222 | None:intergenic | 45.0% | |
| CAGGACACTCAAAACAACAG+AGG | + | chr7.2:78681841-78681860 | None:intergenic | 45.0% | |
| CATCATCAGTTGGGGTGATT+TGG | - | chr7.2:78679874-78679893 | MS.gene43193:intron | 45.0% | |
| CCATATATACCTAGAGACGC+AGG | + | chr7.2:78681625-78681644 | None:intergenic | 45.0% | |
| CCTGCGTCTCTAGGTATATA+TGG | - | chr7.2:78681622-78681641 | MS.gene43193:intron | 45.0% | |
| CGGAGGATTCATCATCAGTT+GGG | - | chr7.2:78679865-78679884 | MS.gene43193:intron | 45.0% | |
| CTCTCTATCTTCTTCCACCA+CGG | + | chr7.2:78680887-78680906 | None:intergenic | 45.0% | |
| GAAGGTTATACCACCAGCTA+AGG | + | chr7.2:78680015-78680034 | None:intergenic | 45.0% | |
| GACACTCATTTGTGTAGTGC+AGG | - | chr7.2:78681200-78681219 | MS.gene43193:intron | 45.0% | |
| GCAAAATGGTTGGGTTTGGA+AGG | - | chr7.2:78681294-78681313 | MS.gene43193:intron | 45.0% | |
| GCGTCTCTAGGTATATATGG+TGG | - | chr7.2:78681625-78681644 | MS.gene43193:intron | 45.0% | |
| GGAGGATTCATCATCAGTTG+GGG | - | chr7.2:78679866-78679885 | MS.gene43193:intron | 45.0% | |
| GGGAATCAATGCACATGATG+TGG | - | chr7.2:78679585-78679604 | MS.gene43193:intron | 45.0% | |
| TAGCGTGTATACAGTCCGTT+TGG | - | chr7.2:78681407-78681426 | MS.gene43193:intron | 45.0% | |
| TAGCTCGAGCTCATCTGATT+GGG | - | chr7.2:78680312-78680331 | MS.gene43193:intron | 45.0% | |
| TGTTGAGGTTGTAATCAGGG+TGG | - | chr7.2:78680152-78680171 | MS.gene43193:intron | 45.0% | |
| TTGAACCTGCAATCAAGCCA+GGG | - | chr7.2:78682116-78682135 | MS.gene43193:CDS | 45.0% | |
| ! | AAGTTGATCACCTTAGCTGG+TGG | - | chr7.2:78680002-78680021 | MS.gene43193:intron | 45.0% |
| ! | CTCCATAAAGCACCAATACC+AGG | + | chr7.2:78681860-78681879 | None:intergenic | 45.0% |
| ! | GTGCTGTTGAGGTTGTAATC+AGG | - | chr7.2:78680148-78680167 | MS.gene43193:intron | 45.0% |
| ! | GTTGGGGTGATTTGGCATTT+AGG | - | chr7.2:78679882-78679901 | MS.gene43193:intron | 45.0% |
| ! | GTTTAAGACGCTTCTGTGCA+AGG | - | chr7.2:78681697-78681716 | MS.gene43193:CDS | 45.0% |
| !! | AACCACTATAGCGGATATCG+GGG | + | chr7.2:78680194-78680213 | None:intergenic | 45.0% |
| !! | AGGTTAGAGAAGGGTGTTGA+GGG | - | chr7.2:78680905-78680924 | MS.gene43193:intron | 45.0% |
| !! | CAACCACTATAGCGGATATC+GGG | + | chr7.2:78680195-78680214 | None:intergenic | 45.0% |
| !! | CTGTGAGCCCTTGTTATTGA+AGG | - | chr7.2:78681240-78681259 | MS.gene43193:intron | 45.0% |
| !! | GTCCTGGTATTGGTGCTTTA+TGG | - | chr7.2:78681855-78681874 | MS.gene43193:CDS | 45.0% |
| !! | GTTCACTGATTCTACCAGCA+AGG | - | chr7.2:78679812-78679831 | MS.gene43193:intron | 45.0% |
| !! | TTGGGCCATTTTATTGGGTC+TGG | - | chr7.2:78680330-78680349 | MS.gene43193:intron | 45.0% |
| !! | TTTTCCAGGTGGATTCAAGG+AGG | - | chr7.2:78681354-78681373 | MS.gene43193:intron | 45.0% |
| !!! | CTCTGTTGTTTTGAGTGTCC+TGG | - | chr7.2:78681839-78681858 | MS.gene43193:intron | 45.0% |
| !!! | GTTTTTTTCCCTGCGTCTCT+AGG | - | chr7.2:78681613-78681632 | MS.gene43193:intron | 45.0% |
| !!! | TGAAGGTGGTTTTGTTCGCT+TGG | - | chr7.2:78681114-78681133 | MS.gene43193:intron | 45.0% |
| !! | ATTTAATTAAAACAAATTTA+TGG | + | chr7.2:78679705-78679724 | None:intergenic | 5.0% |
| AATCGGAAGGGTTGGGTGTT+TGG | - | chr7.2:78680856-78680875 | MS.gene43193:intron | 50.0% | |
| ACGATACACCCAGTCATCCA+CGG | + | chr7.2:78681007-78681026 | None:intergenic | 50.0% | |
| AGCGTACTAGAAGAGCAGGA+AGG | + | chr7.2:78680033-78680052 | None:intergenic | 50.0% | |
| CAGTGGTGTTCCAGAACACT+CGG | + | chr7.2:78681594-78681613 | None:intergenic | 50.0% | |
| CATACCAAAGTTGCATCCCC+TGG | + | chr7.2:78682136-78682155 | None:intergenic | 50.0% | |
| CCTTACGACCTACAAAGGGA+CGG | + | chr7.2:78679666-78679685 | None:intergenic | 50.0% | |
| CGCTATAGTGGTTGTGCACT+TGG | - | chr7.2:78680201-78680220 | MS.gene43193:intron | 50.0% | |
| CTAGCTCGAGCTCATCTGAT+TGG | - | chr7.2:78680311-78680330 | MS.gene43193:intron | 50.0% | |
| CTTACGACCTACAAAGGGAC+GGG | + | chr7.2:78679665-78679684 | None:intergenic | 50.0% | |
| GAGCTAGTAAAGCTAGGCGT+GGG | + | chr7.2:78680298-78680317 | None:intergenic | 50.0% | |
| GAGCTCGAGCTAGTAAAGCT+AGG | + | chr7.2:78680304-78680323 | None:intergenic | 50.0% | |
| GAGGGTTAAATCGGAAGGGT+TGG | - | chr7.2:78680848-78680867 | MS.gene43193:intron | 50.0% | |
| GGAGGCCAGACCCAATAAAA+TGG | + | chr7.2:78680338-78680357 | None:intergenic | 50.0% | |
| GTTGAACCTGCAATCAAGCC+AGG | - | chr7.2:78682115-78682134 | MS.gene43193:CDS | 50.0% | |
| TACAGTCCGTTTGGAGAGCT+AGG | - | chr7.2:78681416-78681435 | MS.gene43193:intron | 50.0% | |
| TCTTCCTCCTTGAATCCACC+TGG | + | chr7.2:78681361-78681380 | None:intergenic | 50.0% | |
| TGAACCTGCAATCAAGCCAG+GGG | - | chr7.2:78682117-78682136 | MS.gene43193:CDS | 50.0% | |
| TGTGTAATGGCCGAGTGTTC+TGG | - | chr7.2:78681581-78681600 | MS.gene43193:intron | 50.0% | |
| TTACGACCTACAAAGGGACG+GGG | + | chr7.2:78679664-78679683 | None:intergenic | 50.0% | |
| TTCCCCGATATCCGCTATAG+TGG | - | chr7.2:78680189-78680208 | MS.gene43193:intron | 50.0% | |
| TTGGGTGTTTGGATTCACCG+TGG | - | chr7.2:78680867-78680886 | MS.gene43193:intron | 50.0% | |
| ! | CGTGGTGGAAGAAGATAGAG+AGG | - | chr7.2:78680885-78680904 | MS.gene43193:intron | 50.0% |
| ! | TTCCGCTCTTTGTGCTGTTG+AGG | - | chr7.2:78680137-78680156 | MS.gene43193:intron | 50.0% |
| !! | GAGGTTAGAGAAGGGTGTTG+AGG | - | chr7.2:78680904-78680923 | MS.gene43193:intron | 50.0% |
| !! | GGTTAGAGAAGGGTGTTGAG+GGG | - | chr7.2:78680906-78680925 | MS.gene43193:CDS | 50.0% |
| !! | GTTAGAGAAGGGTGTTGAGG+GGG | - | chr7.2:78680907-78680926 | MS.gene43193:CDS | 50.0% |
| !!! | CGCTATTTTGGTCGAAACCG+TGG | - | chr7.2:78680987-78681006 | MS.gene43193:intron | 50.0% |
| AGTACGCTCCTCCAAAGCAG+CGG | - | chr7.2:78680045-78680064 | MS.gene43193:intron | 55.0% | |
| CAAAGGGACGGGGAAAGACA+AGG | + | chr7.2:78679654-78679673 | None:intergenic | 55.0% | |
| CAAGCCAGGGGATGCAACTT+TGG | - | chr7.2:78682129-78682148 | MS.gene43193:CDS | 55.0% | |
| CCGTCCCTTTGTAGGTCGTA+AGG | - | chr7.2:78679663-78679682 | MS.gene43193:intron | 55.0% | |
| CGAGCTAGTAAAGCTAGGCG+TGG | + | chr7.2:78680299-78680318 | None:intergenic | 55.0% | |
| GGTCGAAACCGTGGATGACT+GGG | - | chr7.2:78680996-78681015 | MS.gene43193:intron | 55.0% | |
| GGTGTTTGGATTCACCGTGG+TGG | - | chr7.2:78680870-78680889 | MS.gene43193:intron | 55.0% | |
| GTCTTTCCCCGTCCCTTTGT+AGG | - | chr7.2:78679655-78679674 | MS.gene43193:intron | 55.0% | |
| TGGTCGAAACCGTGGATGAC+TGG | - | chr7.2:78680995-78681014 | MS.gene43193:intron | 55.0% | |
| ! | GAGGAGCGTACTAGAAGAGC+AGG | + | chr7.2:78680037-78680056 | None:intergenic | 55.0% |
| GTACGCTCCTCCAAAGCAGC+GGG | - | chr7.2:78680046-78680065 | MS.gene43193:intron | 60.0% | |
| TTGAGGGGGCAAGTCAGGGT+TGG | - | chr7.2:78680921-78680940 | MS.gene43193:CDS | 60.0% | |
| ! | GCATCCCCTGGCTTGATTGC+AGG | + | chr7.2:78682124-78682143 | None:intergenic | 60.0% |
| ! | GGTGTTGAGGGGGCAAGTCA+GGG | - | chr7.2:78680917-78680936 | MS.gene43193:CDS | 60.0% |
| AAGGGGCTTGCCCGCTGCTT+TGG | + | chr7.2:78680059-78680078 | None:intergenic | 65.0% | |
| !! | GGGTGTTGAGGGGGCAAGTC+AGG | - | chr7.2:78680916-78680935 | MS.gene43193:CDS | 65.0% |
| ! | GGGCTTGCCCGCTGCTTTGG+AGG | + | chr7.2:78680056-78680075 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 78679322 | 78682210 | 78679322 | ID=MS.gene43193 |
| chr7.2 | mRNA | 78679322 | 78682210 | 78679322 | ID=MS.gene43193.t1;Parent=MS.gene43193 |
| chr7.2 | exon | 78681848 | 78682210 | 78681848 | ID=MS.gene43193.t1.exon1;Parent=MS.gene43193.t1 |
| chr7.2 | CDS | 78681848 | 78682210 | 78681848 | ID=cds.MS.gene43193.t1;Parent=MS.gene43193.t1 |
| chr7.2 | exon | 78681629 | 78681743 | 78681629 | ID=MS.gene43193.t1.exon2;Parent=MS.gene43193.t1 |
| chr7.2 | CDS | 78681629 | 78681743 | 78681629 | ID=cds.MS.gene43193.t1;Parent=MS.gene43193.t1 |
| chr7.2 | exon | 78680906 | 78680987 | 78680906 | ID=MS.gene43193.t1.exon3;Parent=MS.gene43193.t1 |
| chr7.2 | CDS | 78680906 | 78680987 | 78680906 | ID=cds.MS.gene43193.t1;Parent=MS.gene43193.t1 |
| chr7.2 | exon | 78679322 | 78679433 | 78679322 | ID=MS.gene43193.t1.exon4;Parent=MS.gene43193.t1 |
| chr7.2 | CDS | 78679322 | 78679433 | 78679322 | ID=cds.MS.gene43193.t1;Parent=MS.gene43193.t1 |
| Gene Sequence |
| Protein sequence |
