AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene43516

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene43516.t1 MTR_5g015070 93.978 548 28 5 1 547 1 544 0.0 1016
MS.gene43516.t1 MTR_4g097520 48.755 683 186 27 1 547 1 655 1.07e-162 478
MS.gene43516.t1 MTR_3g103460 49.892 465 166 12 35 443 45 498 3.22e-130 394
MS.gene43516.t1 MTR_1g017400 47.948 536 158 20 100 547 158 660 4.03e-124 379
MS.gene43516.t1 MTR_4g127930 74.510 204 51 1 247 450 155 357 4.02e-109 335
MS.gene43516.t1 MTR_8g020510 79.487 195 36 2 247 441 244 434 2.21e-108 335
MS.gene43516.t1 MTR_8g020510 37.234 94 50 2 231 324 328 412 9.07e-11 65.1
MS.gene43516.t1 MTR_4g065370 67.220 241 65 4 202 441 126 353 8.79e-108 333
MS.gene43516.t1 MTR_7g080460 68.670 233 71 2 214 445 221 452 8.74e-107 335
MS.gene43516.t1 MTR_2g098180 77.551 196 42 2 247 441 163 357 1.04e-106 330
MS.gene43516.t1 MTR_8g068510 69.036 197 57 2 241 437 121 313 3.82e-93 290
MS.gene43516.t1 MTR_5g031880 75.385 195 43 3 247 441 220 409 7.98e-90 285
MS.gene43516.t1 MTR_4g130270 71.176 170 48 1 250 419 46 214 2.13e-83 264
MS.gene43516.t1 MTR_4g130270 37.255 102 55 2 228 329 127 219 4.68e-11 65.1
MS.gene43516.t1 MTR_8g044070 55.274 237 93 6 239 470 41 269 7.51e-75 243
MS.gene43516.t1 MTR_7g009410 65.294 170 55 2 250 419 64 229 1.86e-72 236
MS.gene43516.t1 MTR_7g009410 38.235 102 54 2 228 329 142 234 2.24e-12 69.3
MS.gene43516.t1 MTR_6g011490 65.455 165 53 2 255 419 65 225 5.71e-71 232
MS.gene43516.t1 MTR_2g460730 67.647 170 51 2 250 419 46 211 8.14e-71 231
MS.gene43516.t1 MTR_2g460730 43.902 82 38 1 248 329 143 216 6.85e-11 64.3
MS.gene43516.t1 MTR_4g007770 67.647 170 51 2 250 419 35 200 2.17e-69 226
MS.gene43516.t1 MTR_8g044040 58.537 205 75 4 221 419 20 220 2.02e-68 226
MS.gene43516.t1 MTR_8g468920 61.579 190 68 3 250 439 68 252 1.42e-67 224
MS.gene43516.t1 MTR_8g468920 36.364 99 54 2 231 329 149 238 4.68e-11 65.1
MS.gene43516.t1 MTR_4g094868 53.714 175 69 3 254 428 176 338 1.58e-44 165
MS.gene43516.t1 MTR_4g094868 54.438 169 65 3 254 422 176 332 3.05e-44 164
MS.gene43516.t1 MTR_5g016810 54.438 169 65 3 254 422 152 308 1.86e-43 162
MS.gene43516.t1 MTR_4g061200 51.479 169 70 3 254 422 131 287 2.80e-42 156
MS.gene43516.t1 MTR_4g061200 38.542 96 50 2 234 329 203 289 7.12e-11 64.7
MS.gene43516.t1 MTR_7g100590 51.479 169 70 3 254 422 139 295 1.04e-41 156
MS.gene43516.t1 MTR_4g061200 51.479 169 70 3 254 422 131 287 2.12e-41 155
MS.gene43516.t1 MTR_2g093060 51.479 169 70 3 254 422 134 290 6.64e-41 154
MS.gene43516.t1 MTR_2g093060 51.479 169 70 3 254 422 134 290 7.38e-41 154
MS.gene43516.t1 MTR_5g016810 52.000 175 66 4 254 422 152 314 9.03e-41 154
MS.gene43516.t1 MTR_7g091390 62.595 131 40 2 249 379 55 176 3.23e-40 151
MS.gene43516.t1 MTR_4g094868 54.861 144 63 1 285 428 41 182 8.67e-37 140
MS.gene43516.t1 MTR_4g061200 47.929 169 61 4 254 422 131 272 1.12e-34 135
MS.gene43516.t1 MTR_4g061200 47.929 169 61 4 254 422 131 272 8.68e-34 134
MS.gene43516.t1 MTR_2g093060 47.929 169 61 4 254 422 134 275 1.93e-33 132
MS.gene43516.t1 MTR_7g061190 46.528 144 75 1 286 429 3 144 1.13e-29 114
MS.gene43516.t1 MTR_7g061190 40.000 95 48 2 234 328 53 138 1.20e-11 63.2
MS.gene43516.t1 MTR_7g091390 61.957 92 29 1 288 379 3 88 1.42e-23 102
MS.gene43516.t1 MTR_1g049140 48.214 112 47 3 251 362 134 234 1.92e-18 85.5
MS.gene43516.t1 MTR_1g049140 48.214 112 47 3 251 362 134 234 6.15e-18 86.3
MS.gene43516.t1 MTR_1g049140 48.214 112 47 3 251 362 134 234 9.44e-18 85.1
MS.gene43516.t1 MTR_3g090510 45.794 107 56 1 292 398 163 267 8.39e-17 82.8
MS.gene43516.t1 MTR_7g060560 43.925 107 57 2 292 398 156 259 4.82e-15 77.4
MS.gene43516.t1 MTR_4g086165 38.835 103 57 3 357 456 82 181 4.89e-11 62.8
MS.gene43516.t1 MTR_1g090290 40.964 83 39 3 240 322 100 172 5.99e-11 62.4
MS.gene43516.t1 MTR_2g016730 35.897 117 61 3 344 460 13 115 7.94e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene43516.t1 AT4G37750 41.885 573 170 17 55 547 66 555 4.97e-122 370
MS.gene43516.t1 AT1G72570 65.975 241 75 2 203 437 166 405 5.08e-110 334
MS.gene43516.t1 AT5G57390 82.258 186 31 2 241 426 73 256 3.50e-109 333
MS.gene43516.t1 AT1G51190 65.476 252 75 4 191 441 137 377 1.48e-108 336
MS.gene43516.t1 AT5G57390 82.258 186 31 2 241 426 191 374 3.11e-108 335
MS.gene43516.t1 AT5G17430 76.119 201 47 1 246 446 140 339 4.62e-107 330
MS.gene43516.t1 AT3G20840 77.551 196 42 2 247 441 174 368 1.17e-106 331
MS.gene43516.t1 AT5G17430 76.119 201 47 1 246 446 202 401 1.30e-106 331
MS.gene43516.t1 AT5G65510 69.194 211 64 1 230 440 149 358 8.37e-93 291
MS.gene43516.t1 AT5G65510 69.194 211 64 1 230 440 207 416 1.24e-92 292
MS.gene43516.t1 AT5G65510 69.194 211 64 1 230 440 207 416 1.24e-92 292
MS.gene43516.t1 AT5G10510 79.006 181 37 1 247 427 223 402 9.11e-91 289
MS.gene43516.t1 AT5G10510 79.006 181 37 1 247 427 223 402 9.11e-91 289
MS.gene43516.t1 AT5G10510 79.006 181 37 1 247 427 246 425 1.85e-90 289
MS.gene43516.t1 AT5G10510 79.006 181 37 1 247 427 261 440 2.75e-90 289
MS.gene43516.t1 AT5G10510 79.006 181 37 1 247 427 261 440 2.75e-90 289
MS.gene43516.t1 AT5G10510 77.348 181 37 2 247 427 223 399 2.86e-86 277
MS.gene43516.t1 AT5G10510 69.652 201 40 2 247 427 261 460 5.01e-83 270
MS.gene43516.t1 AT5G65510 73.585 159 41 1 230 388 149 306 1.83e-81 257
MS.gene43516.t1 AT3G54320 70.000 170 50 1 250 419 61 229 3.09e-73 239
MS.gene43516.t1 AT3G54320 70.000 170 50 1 250 419 61 229 4.18e-73 239
MS.gene43516.t1 AT1G79700 68.235 170 53 1 250 419 48 216 2.37e-65 215
MS.gene43516.t1 AT1G16060 64.021 189 62 2 250 433 54 241 8.63e-64 212
MS.gene43516.t1 AT1G79700 64.118 170 50 2 250 419 48 206 1.38e-57 194
MS.gene43516.t1 AT3G54320 70.455 132 38 1 288 419 33 163 2.98e-53 185
MS.gene43516.t1 AT3G54320 70.455 132 38 1 288 419 33 163 2.98e-53 185
MS.gene43516.t1 AT1G79700 68.182 132 41 1 288 419 10 140 2.18e-44 157
MS.gene43516.t1 AT4G36920 53.846 169 66 3 254 422 131 287 7.98e-44 161
MS.gene43516.t1 AT4G36920 53.846 169 66 3 254 422 131 287 7.98e-44 161
MS.gene43516.t1 AT2G41710 63.158 133 43 1 247 379 63 189 1.05e-43 160
MS.gene43516.t1 AT2G41710 63.158 133 43 1 247 379 63 189 2.03e-43 160
MS.gene43516.t1 AT1G16060 61.146 157 55 2 282 433 16 171 4.91e-43 155
MS.gene43516.t1 AT5G67180 51.724 174 72 3 254 427 96 257 5.78e-43 155
MS.gene43516.t1 AT5G67180 50.562 178 76 3 254 431 96 261 6.73e-43 154
MS.gene43516.t1 AT5G67180 51.724 174 72 3 254 427 96 257 1.90e-42 155
MS.gene43516.t1 AT1G79700 66.923 130 42 1 290 419 6 134 1.94e-42 152
MS.gene43516.t1 AT2G41710 60.870 138 43 2 247 379 63 194 3.01e-41 154
MS.gene43516.t1 AT2G28550 50.888 169 71 3 254 422 153 309 1.50e-40 153
MS.gene43516.t1 AT2G41710 61.475 122 41 1 258 379 109 224 3.00e-37 144
MS.gene43516.t1 AT2G28550 51.064 141 57 3 254 394 153 281 1.93e-33 130
MS.gene43516.t1 AT2G28550 47.337 169 62 4 254 422 153 294 3.46e-33 132
MS.gene43516.t1 AT5G67180 46.199 171 79 4 254 424 96 253 2.35e-32 125
MS.gene43516.t1 AT3G54320 70.787 89 25 1 331 419 1 88 1.45e-30 121
MS.gene43516.t1 AT2G28550 51.562 128 50 3 254 381 153 268 1.28e-29 118
MS.gene43516.t1 AT2G28550 51.562 128 50 3 254 381 153 268 1.28e-29 118
MS.gene43516.t1 AT1G16060 61.111 108 36 2 331 433 1 107 6.01e-29 114
MS.gene43516.t1 AT1G16060 61.111 108 36 2 331 433 1 107 6.01e-29 114
MS.gene43516.t1 AT1G16060 61.111 108 36 2 331 433 1 107 6.01e-29 114
MS.gene43516.t1 AT1G16060 61.111 108 36 2 331 433 1 107 6.01e-29 114
MS.gene43516.t1 AT2G39250 39.189 148 79 3 228 374 81 218 6.18e-26 106
MS.gene43516.t1 AT2G39250 39.456 147 78 3 228 373 81 217 1.84e-25 107
MS.gene43516.t1 AT5G60120 41.975 162 67 5 251 412 157 291 7.16e-23 101
MS.gene43516.t1 AT5G60120 41.975 162 67 5 251 412 157 291 7.16e-23 101
MS.gene43516.t1 AT5G60120 41.975 162 67 5 251 412 157 291 7.16e-23 101
MS.gene43516.t1 AT5G60120 41.358 162 68 4 251 412 157 291 8.36e-23 102
MS.gene43516.t1 AT5G60120 41.358 162 68 4 251 412 157 291 8.53e-23 102
MS.gene43516.t1 AT5G60120 41.975 162 67 5 251 412 157 291 1.32e-22 101
MS.gene43516.t1 AT2G28550 44.444 135 58 2 288 422 11 128 1.45e-22 98.2
MS.gene43516.t1 AT3G54990 48.598 107 45 2 254 360 122 218 3.18e-21 93.6
MS.gene43516.t1 AT3G54990 48.598 107 45 2 254 360 122 218 2.33e-20 93.2
MS.gene43516.t1 AT1G16060 62.821 78 24 1 361 433 8 85 7.35e-18 82.4

Find 98 sgRNAs with CRISPR-Local

Find 280 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTCTCTTGTACATGATTT+AGG 0.152119 5.3:+8144124 None:intergenic
ATTTCATCCTCAACTATATT+TGG 0.179003 5.3:+8143976 None:intergenic
GCTTACTTGCATTTCTTCTT+TGG 0.217497 5.3:+8144203 None:intergenic
GTAGATATGAAGCTCATCTA+TGG 0.319596 5.3:-8143438 MS.gene43516:CDS
ACAAGCTTACCAATGCTCTT+TGG 0.325053 5.3:-8140052 MS.gene43516:CDS
TACGAGCCTGTTGGGGAGTC+TGG 0.330751 5.3:-8144103 MS.gene43516:CDS
TCTTCACTGCTAAGAAGGTT+AGG 0.347377 5.3:+8140307 None:intergenic
GCAATGGGAATCTCTCATTA+TGG 0.348044 5.3:-8144234 MS.gene43516:CDS
GGAAATAAAGATCTCTATCT+TGG 0.352592 5.3:-8142544 MS.gene43516:CDS
CCTACACCTCTTCATAACTA+TGG 0.352711 5.3:-8144440 MS.gene43516:CDS
AACATGAGAGTTGTTGCTTC+TGG 0.354947 5.3:+8144073 None:intergenic
CAAGAGAATACGAGCCTGTT+GGG 0.358991 5.3:-8144111 MS.gene43516:CDS
TATGGCTGCACTCAAGTATT+GGG 0.360270 5.3:-8143046 MS.gene43516:CDS
TTTAGGTTATTCAAATTGTT+TGG 0.361139 5.3:+8144141 None:intergenic
TTCTCTTCACAAATGAATAT+AGG 0.368739 5.3:-8144515 MS.gene43516:CDS
ATGTTCTTTGCCCAAAGGTT+TGG 0.385434 5.3:+8143749 None:intergenic
CTTGCCACCTTCCATGTTGA+TGG 0.386912 5.3:+8142587 None:intergenic
AATGATTCCTCAGTTTATCT+AGG 0.395063 5.3:-8143207 MS.gene43516:intron
TATATGTTATTTATTGAGAA+TGG 0.399769 5.3:+8140178 None:intergenic
AAGAATCAGAACCAAACCTT+TGG 0.415358 5.3:-8143760 MS.gene43516:CDS
GGAAGGTGGCAAGCTCGAAT+AGG 0.415431 5.3:-8142577 MS.gene43516:CDS
GCTCGAATAGGGAGAGTTGC+TGG 0.417556 5.3:-8142565 MS.gene43516:CDS
TTGGCTCATGGTATGAAGTT+TGG 0.418171 5.3:+8144160 None:intergenic
AGCTGCAAGAGCTTATGATA+TGG 0.426373 5.3:-8143064 MS.gene43516:CDS
CTTCACTGCTAAGAAGGTTA+GGG 0.437353 5.3:+8140308 None:intergenic
GAAGGTGGCAAGCTCGAATA+GGG 0.444273 5.3:-8142576 MS.gene43516:CDS
AAATTATCAAAAGGAACTTA+AGG 0.445527 5.3:-8142889 MS.gene43516:CDS
GCTCCGCCAGACTCCCCAAC+AGG 0.448381 5.3:+8144097 None:intergenic
AGTCTTGAAGATGAAGTTCA+TGG 0.451972 5.3:-8144597 None:intergenic
ATCTAAGGAGATGGGTATCA+AGG 0.454082 5.3:-8143948 MS.gene43516:CDS
CACATTATCGTTTCTTAAGA+CGG 0.469666 5.3:+8144047 None:intergenic
AAACTTGTCACAATTGAAGA+AGG 0.470854 5.3:+8140109 None:intergenic
ATATGGCTGCACTCAAGTAT+TGG 0.471306 5.3:-8143047 MS.gene43516:CDS
TCAACGGAAGCAGTATCAAT+AGG 0.473844 5.3:+8143820 None:intergenic
AACAGCTTCAGCAGCAGTAG+TGG 0.475357 5.3:+8144484 None:intergenic
CCTTGTTACTCCTCTATACA+TGG 0.477522 5.3:+8142707 None:intergenic
AGAATCAGAACCAAACCTTT+GGG 0.481711 5.3:-8143759 MS.gene43516:CDS
TATTCAAATTGTTTGGCTCA+TGG 0.483216 5.3:+8144148 None:intergenic
GCTGCTGAAGCTGTTCCAAC+AGG 0.484113 5.3:-8144476 MS.gene43516:CDS
CCTCAACTATATTTGGTAGC+TGG 0.484593 5.3:+8143983 None:intergenic
ACACAGCTTGATTGTGAGCT+AGG 0.489113 5.3:+8143865 None:intergenic
TAGCTTCTTCACTGCTAAGA+AGG 0.489640 5.3:+8140302 None:intergenic
AATACGTTGCTCATTTAAGA+AGG 0.490643 5.3:-8142842 MS.gene43516:intron
TCCATGTCTTCAAACGTACA+TGG 0.491556 5.3:+8140238 None:intergenic
ATAGTTGGAAAATTATCAAA+AGG 0.505989 5.3:-8142898 MS.gene43516:intron
GATGAAAAGGAAGCATCAAA+TGG 0.506107 5.3:-8143794 MS.gene43516:CDS
ACCATGTACGTTTGAAGACA+TGG 0.509219 5.3:-8140239 MS.gene43516:CDS
AAAGAGGGCCAAGCTAGAAA+AGG 0.510100 5.3:-8143400 MS.gene43516:CDS
TTTATCAGACATAGGTGGAC+AGG 0.517511 5.3:-8143460 MS.gene43516:intron
AACGATAATGTGATCTTAGA+CGG 0.518135 5.3:-8144036 MS.gene43516:CDS
TGTAAAATTAGGAAAAGTAG+TGG 0.521144 5.3:-8142747 MS.gene43516:intron
CATAACTATGGATATTACTA+CGG 0.524537 5.3:-8144428 MS.gene43516:CDS
CAAAGAACATCTCAATATAG+AGG 0.525445 5.3:-8143736 MS.gene43516:CDS
CTTCCGTTGATACGATGAAA+AGG 0.535299 5.3:-8143807 MS.gene43516:CDS
TGGAAAATTTATACGAGTGG+AGG 0.535662 5.3:+8143020 None:intergenic
GCCTTGCCCATCATGCATGA+TGG 0.542542 5.3:-8144374 MS.gene43516:CDS
AGAGGGGCTTCCATGTATAG+AGG 0.543527 5.3:-8142717 MS.gene43516:CDS
GAAGTCATTCCAAAGAGCAT+TGG 0.544370 5.3:+8140043 None:intergenic
TACTGGAAAATTTATACGAG+TGG 0.545226 5.3:+8143017 None:intergenic
TTGAGATGTTCTTTGCCCAA+AGG 0.546617 5.3:+8143744 None:intergenic
TCAGCTACACAAGAGGAAGC+AGG 0.548680 5.3:-8140427 MS.gene43516:intron
ATATGATGAAGAAGAAGTAG+AGG 0.560222 5.3:-8140158 MS.gene43516:CDS
TTGTGATCCATCATGCATGA+TGG 0.561120 5.3:+8144367 None:intergenic
TAGATATGAAGCTCATCTAT+GGG 0.566225 5.3:-8143437 MS.gene43516:CDS
GGTTGATAATAAAAGCCTGT+TGG 0.572958 5.3:+8144461 None:intergenic
GGAAAATTTATACGAGTGGA+GGG 0.573107 5.3:+8143021 None:intergenic
CCATAGTTATGAAGAGGTGT+AGG 0.575108 5.3:+8144440 None:intergenic
TTCTTAGCAGTGAAGAAGCT+AGG 0.580054 5.3:-8140300 MS.gene43516:CDS
GCTTCAGCAGCAGTAGTGGA+AGG 0.581457 5.3:+8144488 None:intergenic
ACGATAATGTGATCTTAGAC+GGG 0.584490 5.3:-8144035 MS.gene43516:CDS
GGTTATGAAAGTGAACATGT+TGG 0.585732 5.3:-8144407 MS.gene43516:CDS
AAAACAGACAGTGGCATCTG+AGG 0.588309 5.3:+8139989 None:intergenic
AAAGTAGTGGATTCTCAAGA+GGG 0.589213 5.3:-8142734 MS.gene43516:CDS
ACAAGAGAATACGAGCCTGT+TGG 0.589238 5.3:-8144112 MS.gene43516:CDS
TGTGATCCATCATGCATGAT+GGG 0.592730 5.3:+8144368 None:intergenic
GAGCCTGTTGGGGAGTCTGG+CGG 0.596564 5.3:-8144100 MS.gene43516:CDS
TAATATCCATAGTTATGAAG+AGG 0.606260 5.3:+8144434 None:intergenic
TCTAAGGAGATGGGTATCAA+GGG 0.607562 5.3:-8143947 MS.gene43516:CDS
CAAGCTAGAAAAGGAAAGCA+AGG 0.608427 5.3:-8143391 MS.gene43516:intron
CTCAATATAGAGGTGTAACA+AGG 0.612520 5.3:-8143726 MS.gene43516:intron
AAAAGTAGTGGATTCTCAAG+AGG 0.615091 5.3:-8142735 MS.gene43516:CDS
AAACAAAACTGATTATGCAT+CGG 0.617589 5.3:+8139955 None:intergenic
AAGAGAATACGAGCCTGTTG+GGG 0.620765 5.3:-8144110 MS.gene43516:CDS
CCAGCTACCAAATATAGTTG+AGG 0.626449 5.3:-8143983 MS.gene43516:CDS
GTGTATTTGACACTTGTGCA+TGG 0.627663 5.3:+8143905 None:intergenic
ATTGCTGCTATAAAATTCAG+AGG 0.637823 5.3:-8140391 MS.gene43516:CDS
GAAGTTCATGGAAAATATCG+AGG 0.638159 5.3:-8144585 MS.gene43516:CDS
TCCATCATGCATGATGGGCA+AGG 0.639163 5.3:+8144373 None:intergenic
GCAGACACCATCAACATGGA+AGG 0.640576 5.3:-8142594 MS.gene43516:CDS
CCATGTATAGAGGAGTAACA+AGG 0.642280 5.3:-8142707 MS.gene43516:intron
GACACCATCAACATGGAAGG+TGG 0.644993 5.3:-8142591 MS.gene43516:CDS
GTTGGTTTATCAGACATAGG+TGG 0.647177 5.3:-8143465 MS.gene43516:intron
CATGATGGATCACAAGCACA+AGG 0.647359 5.3:-8144359 MS.gene43516:intron
ATGGCTGCACTCAAGTATTG+GGG 0.648728 5.3:-8143045 MS.gene43516:CDS
TGTAGCAGACACCATCAACA+TGG 0.652346 5.3:-8142598 MS.gene43516:intron
TGATATAACAAAATATGACG+TGG 0.656360 5.3:-8140347 MS.gene43516:CDS
TGATTGTGAGCTAGGACTCG+CGG 0.676952 5.3:+8143873 None:intergenic
AAGTAGTGGATTCTCAAGAG+GGG 0.719782 5.3:-8142733 MS.gene43516:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAGAATATAACAAATAT+TGG + chr5.3:8140235-8140254 None:intergenic 10.0%
!! AATAAAAGAAAATATTAAAG+TGG + chr5.3:8143983-8144002 None:intergenic 10.0%
!!! AATTTTACAAAGTTAAATTA+TGG + chr5.3:8141796-8141815 None:intergenic 10.0%
!!! CACTAATTTAATTTAATATA+TGG - chr5.3:8141893-8141912 MS.gene43516:intron 10.0%
!!! TAATTTAACTTTGTAAAATT+AGG - chr5.3:8141796-8141815 MS.gene43516:intron 10.0%
!! ATATCATTTCTCAAATATAT+TGG + chr5.3:8142093-8142112 None:intergenic 15.0%
!! TGTATATTAGTAGAAAAATA+TGG + chr5.3:8142770-8142789 None:intergenic 15.0%
!!! AAAAGTTTTCATAACAAAAA+GGG + chr5.3:8144108-8144127 None:intergenic 15.0%
!!! AATCAAAATAGTAACATTTT+TGG - chr5.3:8140009-8140028 MS.gene43516:CDS 15.0%
!!! ATATTTGAGAAATGATATTT+TGG - chr5.3:8142095-8142114 MS.gene43516:intron 15.0%
!!! CAAATTTTTTCACAATATAA+AGG + chr5.3:8140952-8140971 None:intergenic 15.0%
!!! CTATATATGATTTTAAATTG+CGG - chr5.3:8140908-8140927 MS.gene43516:intron 15.0%
!!! GCATTTTTCTTTATAAAATT+AGG - chr5.3:8142337-8142356 MS.gene43516:intron 15.0%
!!! TATATGTTATTTATTGAGAA+TGG + chr5.3:8144379-8144398 None:intergenic 15.0%
!!! TTTTCTTTTATTAAAGATGT+TGG - chr5.3:8143991-8144010 MS.gene43516:CDS 15.0%
!! AAAATATACACACATAAAAG+AGG + chr5.3:8141213-8141232 None:intergenic 20.0%
!! AAATGTACATTCAATATAAG+AGG + chr5.3:8143025-8143044 None:intergenic 20.0%
!! AAATTATCAAAAGGAACTTA+AGG - chr5.3:8141665-8141684 MS.gene43516:intron 20.0%
!! ACAAAAACATTCTTAACATT+TGG + chr5.3:8141381-8141400 None:intergenic 20.0%
!! ATAGTTGGAAAATTATCAAA+AGG - chr5.3:8141656-8141675 MS.gene43516:intron 20.0%
!! ATCTCATGATAATATATAGT+TGG - chr5.3:8141641-8141660 MS.gene43516:intron 20.0%
!! TATAATAATACTTAGGAAGA+GGG - chr5.3:8143057-8143076 MS.gene43516:CDS 20.0%
!! TATATCAACTCAATGTTAAA+TGG - chr5.3:8142427-8142446 MS.gene43516:intron 20.0%
!! TGGTTATGAATATTAACATA+TGG + chr5.3:8141776-8141795 None:intergenic 20.0%
!! TGTAGTACAATTACATATAT+CGG - chr5.3:8142280-8142299 MS.gene43516:intron 20.0%
!! TTAAGCTTAAAATTATGCAT+TGG - chr5.3:8142891-8142910 MS.gene43516:CDS 20.0%
!! TTATAACTAGGAAATACTTT+CGG + chr5.3:8142206-8142225 None:intergenic 20.0%
!! TTATAATAATACTTAGGAAG+AGG - chr5.3:8143056-8143075 MS.gene43516:CDS 20.0%
!!! ACTTTTAATAATGTGACAAA+AGG + chr5.3:8140871-8140890 None:intergenic 20.0%
!!! CTTTTATGTGTGTATATTTT+TGG - chr5.3:8141213-8141232 MS.gene43516:intron 20.0%
!!! GAAAAGTTTTCATAACAAAA+AGG + chr5.3:8144109-8144128 None:intergenic 20.0%
!!! TGTTACTATTTTGATTGTTT+AGG + chr5.3:8140005-8140024 None:intergenic 20.0%
!!! TTTAGGTTATTCAAATTGTT+TGG + chr5.3:8140416-8140435 None:intergenic 20.0%
!!! TTTGTTTTTTAACACAAAAC+AGG - chr5.3:8143817-8143836 MS.gene43516:CDS 20.0%
!!! TTTTTGCAAATTGATCATTT+AGG + chr5.3:8142515-8142534 None:intergenic 20.0%
!!! TTTTTTAAATCAAAATAGGC+TGG + chr5.3:8143244-8143263 None:intergenic 20.0%
! AAATATGGTCAAAGTAAGTT+AGG + chr5.3:8142755-8142774 None:intergenic 25.0%
! AACTATTTATGTGTAGCAAT+GGG - chr5.3:8140305-8140324 MS.gene43516:CDS 25.0%
! AATTCGGGATAAATTTAAGT+CGG - chr5.3:8142306-8142325 MS.gene43516:intron 25.0%
! AATTGTAGTCTGCAATATAA+AGG + chr5.3:8141018-8141037 None:intergenic 25.0%
! AGCTAGGAGAAATAAAAAAA+TGG - chr5.3:8144270-8144289 MS.gene43516:intron 25.0%
! ATTTCATCCTCAACTATATT+TGG + chr5.3:8140581-8140600 None:intergenic 25.0%
! CATAACTATGGATATTACTA+CGG - chr5.3:8140126-8140145 MS.gene43516:CDS 25.0%
! GTAGTACAATTACATATATC+GGG - chr5.3:8142281-8142300 MS.gene43516:intron 25.0%
! TAACTATTTATGTGTAGCAA+TGG - chr5.3:8140304-8140323 MS.gene43516:CDS 25.0%
! TAATATCCATAGTTATGAAG+AGG + chr5.3:8140123-8140142 None:intergenic 25.0%
! TAATTGTGCAACTGAATAAA+AGG - chr5.3:8142223-8142242 MS.gene43516:intron 25.0%
! TATAACTAGGAAATACTTTC+GGG + chr5.3:8142205-8142224 None:intergenic 25.0%
! TATTCTCTTGTACATGATTT+AGG + chr5.3:8140433-8140452 None:intergenic 25.0%
! TGATATAACAAAATATGACG+TGG - chr5.3:8144207-8144226 MS.gene43516:CDS 25.0%
! TGTAAAATTAGGAAAAGTAG+TGG - chr5.3:8141807-8141826 MS.gene43516:intron 25.0%
! TTACATATATCGGGATAATT+CGG - chr5.3:8142290-8142309 MS.gene43516:intron 25.0%
! TTCTCTTCACAAATGAATAT+AGG - chr5.3:8140039-8140058 MS.gene43516:CDS 25.0%
! TTGTATAGTATATGGGTATT+GGG - chr5.3:8143762-8143781 MS.gene43516:CDS 25.0%
! TTGTTGCAAATTGATCATTT+AGG + chr5.3:8142700-8142719 None:intergenic 25.0%
!! AAATTTTTGATCTAAGGAGA+TGG - chr5.3:8140597-8140616 MS.gene43516:intron 25.0%
!! AACTCCAAGAATTTTATTGT+AGG - chr5.3:8141446-8141465 MS.gene43516:intron 25.0%
!! AATTTTTGATCTAAGGAGAT+GGG - chr5.3:8140598-8140617 MS.gene43516:intron 25.0%
!! AGGATGAAATTTTTGATCTA+AGG - chr5.3:8140591-8140610 MS.gene43516:intron 25.0%
!! CTGCAATATAAAGGATTTTA+AGG + chr5.3:8141009-8141028 None:intergenic 25.0%
!! TTTAAGTTACACATCTATTG+CGG + chr5.3:8142650-8142669 None:intergenic 25.0%
!!! ATTTTGATTGTTTAGGCTAA+AGG + chr5.3:8139998-8140017 None:intergenic 25.0%
!!! TTATCTAATAAGTTCTGAAC+AGG + chr5.3:8143401-8143420 None:intergenic 25.0%
AAACTTGTCACAATTGAAGA+AGG + chr5.3:8144448-8144467 None:intergenic 30.0%
AACGATAATGTGATCTTAGA+CGG - chr5.3:8140518-8140537 MS.gene43516:intron 30.0%
AATACGTTGCTCATTTAAGA+AGG - chr5.3:8141712-8141731 MS.gene43516:intron 30.0%
AATCTTACCTAGATAAACTG+AGG + chr5.3:8141357-8141376 None:intergenic 30.0%
AATGATTCCTCAGTTTATCT+AGG - chr5.3:8141347-8141366 MS.gene43516:intron 30.0%
ACCTCCTACAATAAAATTCT+TGG + chr5.3:8141453-8141472 None:intergenic 30.0%
ACTTGAAGAGATTAGATTGA+TGG - chr5.3:8142993-8143012 MS.gene43516:intron 30.0%
ATATGATGAAGAAGAAGTAG+AGG - chr5.3:8144396-8144415 MS.gene43516:CDS 30.0%
ATTCGGGATAAATTTAAGTC+GGG - chr5.3:8142307-8142326 MS.gene43516:intron 30.0%
ATTGCTGCTATAAAATTCAG+AGG - chr5.3:8144163-8144182 MS.gene43516:CDS 30.0%
CAAAGAACATCTCAATATAG+AGG - chr5.3:8140818-8140837 MS.gene43516:intron 30.0%
CACATTATCGTTTCTTAAGA+CGG + chr5.3:8140510-8140529 None:intergenic 30.0%
CCTTATGATGATAGAAAAAG+AGG - chr5.3:8141404-8141423 MS.gene43516:intron 30.0%
CTATGTCAAGTATTATGAGA+CGG - chr5.3:8142932-8142951 MS.gene43516:intron 30.0%
CTTTACTCAATATTAACCCT+TGG - chr5.3:8143186-8143205 MS.gene43516:intron 30.0%
GATAACAGCTGTAAAAAAGA+GGG - chr5.3:8141139-8141158 MS.gene43516:intron 30.0%
GCAAAGAAGTTAATCATTAC+TGG + chr5.3:8141557-8141576 None:intergenic 30.0%
GCTTGATTTATAACGAATGT+TGG - chr5.3:8141071-8141090 MS.gene43516:intron 30.0%
GGAAATAAAGATCTCTATCT+TGG - chr5.3:8142010-8142029 MS.gene43516:intron 30.0%
GTTGTATAGTATATGGGTAT+TGG - chr5.3:8143761-8143780 MS.gene43516:CDS 30.0%
TACATATATCGGGATAATTC+GGG - chr5.3:8142291-8142310 MS.gene43516:intron 30.0%
TACTGGAAAATTTATACGAG+TGG + chr5.3:8141540-8141559 None:intergenic 30.0%
TAGATATGAAGCTCATCTAT+GGG - chr5.3:8141117-8141136 MS.gene43516:intron 30.0%
TCAGTTGCACAATTATAACT+AGG + chr5.3:8142218-8142237 None:intergenic 30.0%
TGAATAAAAGGCTGAAATAG+TGG - chr5.3:8142235-8142254 MS.gene43516:intron 30.0%
TTAAGTTACACATCTATTGC+GGG + chr5.3:8142649-8142668 None:intergenic 30.0%
! AATACGGGTTGTATAGTATA+TGG - chr5.3:8143754-8143773 MS.gene43516:CDS 30.0%
! ACAAAATTTTGCAACATGGA+AGG - chr5.3:8143457-8143476 MS.gene43516:intron 30.0%
! ATACGGGTTGTATAGTATAT+GGG - chr5.3:8143755-8143774 MS.gene43516:CDS 30.0%
! CAAAATGCACAGCTTTTATA+AGG + chr5.3:8141271-8141290 None:intergenic 30.0%
! CAATTTTTAACGAAGATTGC+TGG - chr5.3:8142458-8142477 MS.gene43516:intron 30.0%
! CCTCTTTTTCTATCATCATA+AGG + chr5.3:8141407-8141426 None:intergenic 30.0%
! CGAAACAAAATTTTGCAACA+TGG - chr5.3:8143453-8143472 MS.gene43516:CDS 30.0%
! CTTTTTCCTCAATAAAGTCA+TGG - chr5.3:8143908-8143927 MS.gene43516:CDS 30.0%
! GCAATTTTGTCTTCAATTCA+AGG - chr5.3:8141575-8141594 MS.gene43516:intron 30.0%
! TATTCAAATTGTTTGGCTCA+TGG + chr5.3:8140409-8140428 None:intergenic 30.0%
! TCCAAGAATTTTATTGTAGG+AGG - chr5.3:8141449-8141468 MS.gene43516:intron 30.0%
! TCTCTTTGAACTCTTCTTTT+CGG - chr5.3:8143123-8143142 MS.gene43516:intron 30.0%
! TTTTATAGCAGCAATGTCAT+AGG + chr5.3:8144158-8144177 None:intergenic 30.0%
! TTTTTAACACAAAACAGGCT+GGG - chr5.3:8143822-8143841 MS.gene43516:CDS 30.0%
!! AATGTTGGTTTATCAGACAT+AGG - chr5.3:8141086-8141105 MS.gene43516:intron 30.0%
!! ATTAAAGATGTTGGTTCAGA+AGG - chr5.3:8144000-8144019 MS.gene43516:CDS 30.0%
!! TCTTCTAGCTGATATTTTGT+CGG + chr5.3:8140545-8140564 None:intergenic 30.0%
!!! GAGTATACTCTCACATTTTT+TGG - chr5.3:8142043-8142062 MS.gene43516:intron 30.0%
!!! TTTTTTAACACAAAACAGGC+TGG - chr5.3:8143821-8143840 MS.gene43516:CDS 30.0%
AAGAATCAGAACCAAACCTT+TGG - chr5.3:8140794-8140813 MS.gene43516:intron 35.0%
ACGATAATGTGATCTTAGAC+GGG - chr5.3:8140519-8140538 MS.gene43516:intron 35.0%
AGAATCAGAACCAAACCTTT+GGG - chr5.3:8140795-8140814 MS.gene43516:intron 35.0%
CAAGCAACAAAAAACACGAA+AGG + chr5.3:8141056-8141075 None:intergenic 35.0%
CCTTATGTGACTGAAAAGAA+GGG + chr5.3:8143943-8143962 None:intergenic 35.0%
CTCAATAAAGTCATGGAATC+CGG - chr5.3:8143915-8143934 MS.gene43516:CDS 35.0%
CTTTACTCAATATTGACCCT+TGG + chr5.3:8143880-8143899 None:intergenic 35.0%
GAACCATGAGATTAAACCAA+GGG - chr5.3:8143861-8143880 MS.gene43516:CDS 35.0%
GAACCATGAGATTAAACCAA+GGG + chr5.3:8143880-8143861 None:intergenic 35.0%
GAAGTTCATGGAAAATATCG+AGG - chr5.3:8139969-8139988 MS.gene43516:CDS 35.0%
GCTTACTTGCATTTCTTCTT+TGG + chr5.3:8140354-8140373 None:intergenic 35.0%
GGAAAATTTATACGAGTGGA+GGG + chr5.3:8141536-8141555 None:intergenic 35.0%
GGATAACAGCTGTAAAAAAG+AGG - chr5.3:8141138-8141157 MS.gene43516:intron 35.0%
GGATTCCATGACTTTATTGA+GGG - chr5.3:8143150-8143169 MS.gene43516:intron 35.0%
GGTTATGAAAGTGAACATGT+TGG - chr5.3:8140147-8140166 MS.gene43516:CDS 35.0%
GTAGATATGAAGCTCATCTA+TGG - chr5.3:8141116-8141135 MS.gene43516:intron 35.0%
TAACCCTTGGTTTAATCTCA+TGG - chr5.3:8143199-8143218 MS.gene43516:intron 35.0%
TCAATAAAGTCATGGAATCC+GGG - chr5.3:8143916-8143935 MS.gene43516:CDS 35.0%
TGAACCATGAGATTAAACCA+AGG - chr5.3:8143860-8143879 MS.gene43516:CDS 35.0%
TGAACCATGAGATTAAACCA+AGG + chr5.3:8143879-8143860 None:intergenic 35.0%
TGGAAAATTTATACGAGTGG+AGG + chr5.3:8141537-8141556 None:intergenic 35.0%
! AAACTTTTCAGCTACACAAG+AGG - chr5.3:8144120-8144139 MS.gene43516:CDS 35.0%
! ATTTTGCATCTTTTCTGCAC+TGG + chr5.3:8144352-8144371 None:intergenic 35.0%
! CTCAATATAGAGGTGTAACA+AGG - chr5.3:8140828-8140847 MS.gene43516:intron 35.0%
! CTGAAATAGTGGAATTCAGT+TGG - chr5.3:8142246-8142265 MS.gene43516:intron 35.0%
! CTTCCTTTTCATCGTATCAA+CGG + chr5.3:8140753-8140772 None:intergenic 35.0%
! CTTTTCCCTCAATAAAGTCA+TGG + chr5.3:8143158-8143177 None:intergenic 35.0%
! GTAAGCTTGTCATGTTTTCA+GGG + chr5.3:8144492-8144511 None:intergenic 35.0%
! TGAACTCTTCTTTTCGGATT+CGG - chr5.3:8143129-8143148 MS.gene43516:intron 35.0%
!! AAAAGTAGTGGATTCTCAAG+AGG - chr5.3:8141819-8141838 MS.gene43516:intron 35.0%
!! AAAGTAGTGGATTCTCAAGA+GGG - chr5.3:8141820-8141839 MS.gene43516:intron 35.0%
!! CTAATAAGTTCTGAACAGGA+CGG + chr5.3:8143397-8143416 None:intergenic 35.0%
!! GATGAAAAGGAAGCATCAAA+TGG - chr5.3:8140760-8140779 MS.gene43516:intron 35.0%
!! GGTTGATAATAAAAGCCTGT+TGG + chr5.3:8140096-8140115 None:intergenic 35.0%
ACAAGCTTACCAATGCTCTT+TGG - chr5.3:8144502-8144521 MS.gene43516:CDS 40.0%
ACCATGTACGTTTGAAGACA+TGG - chr5.3:8144315-8144334 MS.gene43516:intron 40.0%
AGCTGCAAGAGCTTATGATA+TGG - chr5.3:8141490-8141509 MS.gene43516:intron 40.0%
AGGAACACGACATAGATCAA+CGG - chr5.3:8143690-8143709 MS.gene43516:intron 40.0%
ATATGGCTGCACTCAAGTAT+TGG - chr5.3:8141507-8141526 MS.gene43516:intron 40.0%
ATCTAAGGAGATGGGTATCA+AGG - chr5.3:8140606-8140625 MS.gene43516:intron 40.0%
ATGTTCTTTGCCCAAAGGTT+TGG + chr5.3:8140808-8140827 None:intergenic 40.0%
CAAGCTAGAAAAGGAAAGCA+AGG - chr5.3:8141163-8141182 MS.gene43516:intron 40.0%
CCAGCTACCAAATATAGTTG+AGG - chr5.3:8140571-8140590 MS.gene43516:intron 40.0%
CCATGTATAGAGGAGTAACA+AGG - chr5.3:8141847-8141866 MS.gene43516:intron 40.0%
CCTACACCTCTTCATAACTA+TGG - chr5.3:8140114-8140133 MS.gene43516:CDS 40.0%
CCTTGTTACTCCTCTATACA+TGG + chr5.3:8141850-8141869 None:intergenic 40.0%
CGGATTCCATGACTTTATTG+AGG - chr5.3:8143149-8143168 MS.gene43516:intron 40.0%
CGGATTCCATGACTTTATTG+AGG + chr5.3:8143168-8143149 None:intergenic 40.0%
CTTCACTGCTAAGAAGGTTA+GGG + chr5.3:8144249-8144268 None:intergenic 40.0%
CTTCCGTTGATACGATGAAA+AGG - chr5.3:8140747-8140766 MS.gene43516:intron 40.0%
GCAATGGGAATCTCTCATTA+TGG - chr5.3:8140320-8140339 MS.gene43516:CDS 40.0%
GCCTTATGTGACTGAAAAGA+AGG + chr5.3:8143944-8143963 None:intergenic 40.0%
GTGTATTTGACACTTGTGCA+TGG + chr5.3:8140652-8140671 None:intergenic 40.0%
TAGCTTCTTCACTGCTAAGA+AGG + chr5.3:8144255-8144274 None:intergenic 40.0%
TAGTGGAATTCAGTTGGCAA+TGG - chr5.3:8142252-8142271 MS.gene43516:intron 40.0%
TATGGCTGCACTCAAGTATT+GGG - chr5.3:8141508-8141527 MS.gene43516:intron 40.0%
TCAACGGAAGCAGTATCAAT+AGG + chr5.3:8140737-8140756 None:intergenic 40.0%
TCCATGTCTTCAAACGTACA+TGG + chr5.3:8144319-8144338 None:intergenic 40.0%
TCTAAGGAGATGGGTATCAA+GGG - chr5.3:8140607-8140626 MS.gene43516:intron 40.0%
TCTTCACTGCTAAGAAGGTT+AGG + chr5.3:8144250-8144269 None:intergenic 40.0%
TGACCCTTGGTTTAATCTCA+TGG + chr5.3:8143867-8143886 None:intergenic 40.0%
TGTGATCCATCATGCATGAT+GGG + chr5.3:8140189-8140208 None:intergenic 40.0%
TTCTTAGCAGTGAAGAAGCT+AGG - chr5.3:8144254-8144273 MS.gene43516:intron 40.0%
TTGAGATGTTCTTTGCCCAA+AGG + chr5.3:8140813-8140832 None:intergenic 40.0%
TTGGCTCATGGTATGAAGTT+TGG + chr5.3:8140397-8140416 None:intergenic 40.0%
TTGTGATCCATCATGCATGA+TGG + chr5.3:8140190-8140209 None:intergenic 40.0%
TTTATCAGACATAGGTGGAC+AGG - chr5.3:8141094-8141113 MS.gene43516:intron 40.0%
! AACATGAGAGTTGTTGCTTC+TGG + chr5.3:8140484-8140503 None:intergenic 40.0%
! CCATAGTTATGAAGAGGTGT+AGG + chr5.3:8140117-8140136 None:intergenic 40.0%
! CCCTTCTTTTCAGTCACATA+AGG - chr5.3:8143940-8143959 MS.gene43516:CDS 40.0%
! CCTCAACTATATTTGGTAGC+TGG + chr5.3:8140574-8140593 None:intergenic 40.0%
! GAAGTCATTCCAAAGAGCAT+TGG + chr5.3:8144514-8144533 None:intergenic 40.0%
! GGTAAGCTTGTCATGTTTTC+AGG + chr5.3:8144493-8144512 None:intergenic 40.0%
! GTTGGTTTATCAGACATAGG+TGG - chr5.3:8141089-8141108 MS.gene43516:intron 40.0%
!! AAAGATGTTGGTTCAGAAGG+AGG - chr5.3:8144003-8144022 MS.gene43516:CDS 40.0%
!! AAGTAGTGGATTCTCAAGAG+GGG - chr5.3:8141821-8141840 MS.gene43516:intron 40.0%
!! TATGGGTGGGTTTTGTGAAA+TGG + chr5.3:8143283-8143302 None:intergenic 40.0%
!! TGGGTCAAGTTTTGTGGAAT+GGG - chr5.3:8143610-8143629 MS.gene43516:intron 40.0%
!! TTGGGTCAAGTTTTGTGGAA+TGG - chr5.3:8143609-8143628 MS.gene43516:intron 40.0%
!!! CTTGCTTTCCTTTTCTAGCT+TGG + chr5.3:8141165-8141184 None:intergenic 40.0%
AAAACAGACAGTGGCATCTG+AGG + chr5.3:8144568-8144587 None:intergenic 45.0%
AAAGAGGGCCAAGCTAGAAA+AGG - chr5.3:8141154-8141173 MS.gene43516:intron 45.0%
AAATACTTTCGGGAGAGCCT+CGG + chr5.3:8142195-8142214 None:intergenic 45.0%
AACACGACATAGATCAACGG+AGG - chr5.3:8143693-8143712 MS.gene43516:intron 45.0%
AAGAGAATACGAGCCTGTTG+GGG - chr5.3:8140444-8140463 MS.gene43516:intron 45.0%
AATCTCACGAATCTGAGAGC+AGG - chr5.3:8143654-8143673 MS.gene43516:intron 45.0%
ACAAGAGAATACGAGCCTGT+TGG - chr5.3:8140442-8140461 MS.gene43516:intron 45.0%
ACACAGCTTGATTGTGAGCT+AGG + chr5.3:8140692-8140711 None:intergenic 45.0%
AGGGCGATGAGTCATGAATA+CGG - chr5.3:8143738-8143757 MS.gene43516:CDS 45.0%
ATAGATCAACGGAGGTCTGA+AGG - chr5.3:8143701-8143720 MS.gene43516:intron 45.0%
ATGGATCACAAGCACAAGGT+TGG - chr5.3:8140199-8140218 MS.gene43516:CDS 45.0%
CAAGAGAATACGAGCCTGTT+GGG - chr5.3:8140443-8140462 MS.gene43516:intron 45.0%
CCCAAAGAAAAGCAACAGTG+CGG - chr5.3:8143516-8143535 MS.gene43516:intron 45.0%
CTGAGGAATCATTGTGCATG+TGG + chr5.3:8141340-8141359 None:intergenic 45.0%
GAAGGAAGCAGTTTGTAGGA+GGG - chr5.3:8143719-8143738 MS.gene43516:intron 45.0%
GTCTGAAGGAAGCAGTTTGT+AGG - chr5.3:8143715-8143734 MS.gene43516:intron 45.0%
GTTACACATCTATTGCGGGA+CGG + chr5.3:8142645-8142664 None:intergenic 45.0%
TGAAGGAAGCAGTTTGTAGG+AGG - chr5.3:8143718-8143737 MS.gene43516:intron 45.0%
TGTAGCAGACACCATCAACA+TGG - chr5.3:8141956-8141975 MS.gene43516:intron 45.0%
TTACACATCTATTGCGGGAC+GGG + chr5.3:8142644-8142663 None:intergenic 45.0%
! AGCTGTTGGGTCAAGTTTTG+TGG - chr5.3:8143604-8143623 MS.gene43516:intron 45.0%
! ATGGCTGCACTCAAGTATTG+GGG - chr5.3:8141509-8141528 MS.gene43516:intron 45.0%
!! AGTTTTGTGGAATGGGTGTC+AGG - chr5.3:8143617-8143636 MS.gene43516:intron 45.0%
!! CATGATGGATCACAAGCACA+AGG - chr5.3:8140195-8140214 MS.gene43516:CDS 45.0%
!!! CCGCACTGTTGCTTTTCTTT+GGG + chr5.3:8143519-8143538 None:intergenic 45.0%
!!! TCCGCACTGTTGCTTTTCTT+TGG + chr5.3:8143520-8143539 None:intergenic 45.0%
!! TTATAATTATAATAATACTT+AGG - chr5.3:8143050-8143069 MS.gene43516:CDS 5.0%
!! TTATATATGAAAATTAAAAT+TGG - chr5.3:8141917-8141936 MS.gene43516:intron 5.0%
!!! TTTTTTTTTTAAATCAAAAT+AGG + chr5.3:8143248-8143267 None:intergenic 5.0%
AACAGCTTCAGCAGCAGTAG+TGG + chr5.3:8140073-8140092 None:intergenic 50.0%
AAGGGCAATGGGTATGGGTT+GGG + chr5.3:8143311-8143330 None:intergenic 50.0%
AATACTTTCGGGAGAGCCTC+GGG + chr5.3:8142194-8142213 None:intergenic 50.0%
AATGGGTGTCAGGTTTGGCA+TGG - chr5.3:8143627-8143646 MS.gene43516:intron 50.0%
AGAGGGGCTTCCATGTATAG+AGG - chr5.3:8141837-8141856 MS.gene43516:intron 50.0%
AGCGATGCTATTCATCGCGA+GGG - chr5.3:8142161-8142180 MS.gene43516:intron 50.0%
CACGCAGCAAAAACAGACAG+TGG + chr5.3:8144577-8144596 None:intergenic 50.0%
CGGTGAATGAGGTCTTAAGG+CGG + chr5.3:8143344-8143363 None:intergenic 50.0%
CTTGCCACCTTCCATGTTGA+TGG + chr5.3:8141970-8141989 None:intergenic 50.0%
GAAGGTGGCAAGCTCGAATA+GGG - chr5.3:8141978-8141997 MS.gene43516:intron 50.0%
GACACCATCAACATGGAAGG+TGG - chr5.3:8141963-8141982 MS.gene43516:intron 50.0%
GAGAGAAGTCATAACAGCGG+CGG - chr5.3:8143555-8143574 MS.gene43516:intron 50.0%
GCAGACACCATCAACATGGA+AGG - chr5.3:8141960-8141979 MS.gene43516:intron 50.0%
GGCGAGAGAAGTCATAACAG+CGG - chr5.3:8143552-8143571 MS.gene43516:intron 50.0%
GGGCGATGAGTCATGAATAC+GGG - chr5.3:8143739-8143758 MS.gene43516:CDS 50.0%
GTGACTGAAAAGAAGGGACC+CGG + chr5.3:8143937-8143956 None:intergenic 50.0%
TACACATCTATTGCGGGACG+GGG + chr5.3:8142643-8142662 None:intergenic 50.0%
TCAGCTACACAAGAGGAAGC+AGG - chr5.3:8144127-8144146 MS.gene43516:CDS 50.0%
TGAATGAGGTCTTAAGGCGG+CGG + chr5.3:8143341-8143360 None:intergenic 50.0%
TGATTGTGAGCTAGGACTCG+CGG + chr5.3:8140684-8140703 None:intergenic 50.0%
TGCAGAAGGGCAATGGGTAT+GGG + chr5.3:8143316-8143335 None:intergenic 50.0%
TGTGGAATGGGTGTCAGGTT+TGG - chr5.3:8143622-8143641 MS.gene43516:intron 50.0%
TTGCAGAAGGGCAATGGGTA+TGG + chr5.3:8143317-8143336 None:intergenic 50.0%
!! GTATGGGTTGGGTGGCATAT+GGG + chr5.3:8143300-8143319 None:intergenic 50.0%
!! TCCATCATGCATGATGGGCA+AGG + chr5.3:8140184-8140203 None:intergenic 50.0%
!!! CACTGTCTGTTTTTGCTGCG+TGG - chr5.3:8144575-8144594 MS.gene43516:CDS 50.0%
ACACATCTATTGCGGGACGG+GGG + chr5.3:8142642-8142661 None:intergenic 55.0%
ACTTCTCTCGCCGCTGTGTT+TGG + chr5.3:8143544-8143563 None:intergenic 55.0%
AGCGGCGGCATATTGAAGCA+CGG - chr5.3:8143570-8143589 MS.gene43516:intron 55.0%
CAGCGATGCTATTCATCGCG+AGG - chr5.3:8142160-8142179 MS.gene43516:intron 55.0%
CAGTGCGGATCCAAACACAG+CGG - chr5.3:8143531-8143550 MS.gene43516:intron 55.0%
CGAATCTGAGAGCAGGACAG+CGG - chr5.3:8143661-8143680 MS.gene43516:intron 55.0%
CGGCGGTGAATGAGGTCTTA+AGG + chr5.3:8143347-8143366 None:intergenic 55.0%
GAAGGGCAATGGGTATGGGT+TGG + chr5.3:8143312-8143331 None:intergenic 55.0%
GCCTTGCCCATCATGCATGA+TGG - chr5.3:8140180-8140199 MS.gene43516:CDS 55.0%
GCGGCATATTGAAGCACGGT+GGG - chr5.3:8143574-8143593 MS.gene43516:intron 55.0%
GCGGTTTGCAGAAGGGCAAT+GGG + chr5.3:8143322-8143341 None:intergenic 55.0%
GCTCGAATAGGGAGAGTTGC+TGG - chr5.3:8141989-8142008 MS.gene43516:intron 55.0%
GCTGCTGAAGCTGTTCCAAC+AGG - chr5.3:8140078-8140097 MS.gene43516:CDS 55.0%
GGAAGGTGGCAAGCTCGAAT+AGG - chr5.3:8141977-8141996 MS.gene43516:intron 55.0%
GGTGTCAGGTTTGGCATGGT+GGG - chr5.3:8143631-8143650 MS.gene43516:intron 55.0%
TAAGGCGGCGGTTTGCAGAA+GGG + chr5.3:8143329-8143348 None:intergenic 55.0%
TTAAGGCGGCGGTTTGCAGA+AGG + chr5.3:8143330-8143349 None:intergenic 55.0%
! GCTTCAGCAGCAGTAGTGGA+AGG + chr5.3:8140069-8140088 None:intergenic 55.0%
!! GGTATGGGTTGGGTGGCATA+TGG + chr5.3:8143301-8143320 None:intergenic 55.0%
ACGCATAACGAGCACGACGG+CGG + chr5.3:8143364-8143383 None:intergenic 60.0%
CACATCTATTGCGGGACGGG+GGG + chr5.3:8142641-8142660 None:intergenic 60.0%
GCGACGCATAACGAGCACGA+CGG + chr5.3:8143367-8143386 None:intergenic 60.0%
GGCGGCATATTGAAGCACGG+TGG - chr5.3:8143573-8143592 MS.gene43516:intron 60.0%
GGCGGTTTGCAGAAGGGCAA+TGG + chr5.3:8143323-8143342 None:intergenic 60.0%
GGGTGTCAGGTTTGGCATGG+TGG - chr5.3:8143630-8143649 MS.gene43516:intron 60.0%
GGGTTGGGTGGCATATGGGT+GGG + chr5.3:8143296-8143315 None:intergenic 60.0%
TACGAGCCTGTTGGGGAGTC+TGG - chr5.3:8140451-8140470 MS.gene43516:intron 60.0%
TCGCGAGGGAAATCATCCCG+AGG - chr5.3:8142175-8142194 MS.gene43516:intron 60.0%
TTCTGAACAGGACGGCAGCG+CGG + chr5.3:8143389-8143408 None:intergenic 60.0%
! TGGGTTGGGTGGCATATGGG+TGG + chr5.3:8143297-8143316 None:intergenic 60.0%
!! GGCAATGGGTATGGGTTGGG+TGG + chr5.3:8143308-8143327 None:intergenic 60.0%
GAGCACGACGGCGGTGAATG+AGG + chr5.3:8143355-8143374 None:intergenic 65.0%
GAGCCTGTTGGGGAGTCTGG+CGG - chr5.3:8140454-8140473 MS.gene43516:intron 65.0%
GGTGGGTCGACGCAGCTGTT+GGG - chr5.3:8143591-8143610 MS.gene43516:intron 65.0%
CGGTGGGTCGACGCAGCTGT+TGG - chr5.3:8143590-8143609 MS.gene43516:intron 70.0%
GCTCCGCCAGACTCCCCAAC+AGG + chr5.3:8140460-8140479 None:intergenic 70.0%
GAGCAGGACAGCGGCGCGTG+AGG - chr5.3:8143670-8143689 MS.gene43516:intron 75.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 8139967 8144609 8139967 ID=MS.gene43516
chr5.3 mRNA 8139967 8144609 8139967 ID=MS.gene43516.t1;Parent=MS.gene43516
chr5.3 exon 8144360 8144609 8144360 ID=MS.gene43516.t1.exon1;Parent=MS.gene43516.t1
chr5.3 CDS 8144360 8144609 8144360 ID=cds.MS.gene43516.t1;Parent=MS.gene43516.t1
chr5.3 exon 8143727 8144255 8143727 ID=MS.gene43516.t1.exon2;Parent=MS.gene43516.t1
chr5.3 CDS 8143727 8144255 8143727 ID=cds.MS.gene43516.t1;Parent=MS.gene43516.t1
chr5.3 exon 8143392 8143474 8143392 ID=MS.gene43516.t1.exon3;Parent=MS.gene43516.t1
chr5.3 CDS 8143392 8143474 8143392 ID=cds.MS.gene43516.t1;Parent=MS.gene43516.t1
chr5.3 exon 8143208 8143216 8143208 ID=MS.gene43516.t1.exon4;Parent=MS.gene43516.t1
chr5.3 CDS 8143208 8143216 8143208 ID=cds.MS.gene43516.t1;Parent=MS.gene43516.t1
chr5.3 exon 8143020 8143108 8143020 ID=MS.gene43516.t1.exon5;Parent=MS.gene43516.t1
chr5.3 CDS 8143020 8143108 8143020 ID=cds.MS.gene43516.t1;Parent=MS.gene43516.t1
chr5.3 exon 8142843 8142916 8142843 ID=MS.gene43516.t1.exon6;Parent=MS.gene43516.t1
chr5.3 CDS 8142843 8142916 8142843 ID=cds.MS.gene43516.t1;Parent=MS.gene43516.t1
chr5.3 exon 8142708 8142758 8142708 ID=MS.gene43516.t1.exon7;Parent=MS.gene43516.t1
chr5.3 CDS 8142708 8142758 8142708 ID=cds.MS.gene43516.t1;Parent=MS.gene43516.t1
chr5.3 exon 8142536 8142615 8142536 ID=MS.gene43516.t1.exon8;Parent=MS.gene43516.t1
chr5.3 CDS 8142536 8142615 8142536 ID=cds.MS.gene43516.t1;Parent=MS.gene43516.t1
chr5.3 exon 8139967 8140445 8139967 ID=MS.gene43516.t1.exon9;Parent=MS.gene43516.t1
chr5.3 CDS 8139967 8140445 8139967 ID=cds.MS.gene43516.t1;Parent=MS.gene43516.t1
Gene Sequence

>MS.gene43516

ATGAAGTTCATGGAAAATATCGAGGATACCTTTAGCCTAAACAATCAAAATAGTAACATTTTTGGTTTATCTTTCTCTTCACAAATGAATATAGGTGCTCCTTCCACTACTGCTGCTGAAGCTGTTCCAACAGGCTTTTATTATCAACCTACACCTCTTCATAACTATGGATATTACTACGGTTATGAAAGTGAACATGTTGGATTGTATTCAGCCTTGCCCATCATGCATGATGGATCACAAGCACAAGGTTGGTTAATTAGTTCCAATATTTGTTATATTCTTTTTTCTTATTTGAAATGAAATGTACTAATAATTTAACTTTTTGAATACTTTGTAACTATTTATGTGTAGCAATGGGAATCTCTCATTATGGATGCAGTACCAAAGAAGAAATGCAAGTAAGCATAGATAGTATTTTTAACAACCAAACTTCATACCATGAGCCAAACAATTTGAATAACCTAAATCATGTACAAGAGAATACGAGCCTGTTGGGGAGTCTGGCGGAGCACCAGAAGCAACAACTCTCATGTTACACCGTCTTAAGAAACGATAATGTGATCTTAGACGGGCCGACAAAATATCAGCTAGAAGATAATGTCCAGCTACCAAATATAGTTGAGGATGAAATTTTTGATCTAAGGAGATGGGTATCAAGGGACTTTCATGCTGCTACTAGCCATGCACAAGTGTCAAATACACGTGTGTTGTCCGCGAGTCCTAGCTCACAATCAAGCTGTGTTACAAGTTCACAACAAACATCACCTATTGATACTGCTTCCGTTGATACGATGAAAAGGAAGCATCAAATGGTGAACTTGAAAAAGAATCAGAACCAAACCTTTGGGCAAAGAACATCTCAATATAGAGGTGTAACAAGGTTTGTTTTCATCTAATGCCTTTTGTCACATTATTAAAAGTGTTGTTAAGCATTAAGACTATATATGATTTTAAATTGCGGTTGAGTATATTCTATAAACCTTTATATTGTGAAAAAATTTGATCGATACAATCGAATTTGCAGTTATGACGCAGACCTTAAAATCCTTTATATTGCAGACTACAATTTAAAACTGTTCATCTCCTTTCGTGTTTTTTGTTGCTTGATTTATAACGAATGTTGGTTTATCAGACATAGGTGGACAGGTAGATATGAAGCTCATCTATGGGATAACAGCTGTAAAAAAGAGGGCCAAGCTAGAAAAGGAAAGCAAGGTAAGAATTAAAGCAACTATTATTTCCTCTTTTATGTGTGTATATTTTTGGTCAAACAAATCTTATTAGCTTGATTCTATTCTCCTTATAAAAGCTGTGCATTTTGTAGCAATATTATTTGTCTCTCACTCTTGTTTTTGTTTGTGTTTTCTCCACATGCACAATGATTCCTCAGTTTATCTAGGTAAGATTTCCAAATGTTAAGAATGTTTTTGTTTTCCTTATGATGATAGAAAAAGAGGAACATTTATGTATATAAGTAACTCCAAGAATTTTATTGTAGGAGGTTATGATATAGAAGAAAAAGCTGCAAGAGCTTATGATATGGCTGCACTCAAGTATTGGGGACCCTCCACTCGTATAAATTTTCCAGTAATGATTAACTTCTTTGCAATTTTGTCTTCAATTCAAGGATCTAATTCAGTACTGACAGTAACTAATATGTAATTAATCATGATCTCATGATAATATATAGTTGGAAAATTATCAAAAGGAACTTAAGGAAATGAAGAAAATGACTAGACTAGAATACGTTGCTCATTTAAGAAGGTACAAATATTTACATCTCAATCATTATGCAGTTAATAACCATATGTTAATATTCATAACCATAATTTAACTTTGTAAAATTAGGAAAAGTAGTGGATTCTCAAGAGGGGCTTCCATGTATAGAGGAGTAACAAGGTGAGTCTAACATCACATGCATTGCACTAATTTAATTTAATATATGGTTTATATATGAAAATTAAAATTGGCTCTGATTATTATCTTTGTAGCAGACACCATCAACATGGAAGGTGGCAAGCTCGAATAGGGAGAGTTGCTGGAAATAAAGATCTCTATCTTGGAACTTTCAGTGAGTATACTCTCACATTTTTTGGTTATTCTTTCTTTTGTGATTGTGACCAATATATTTGAGAAATGATATTTTGGTCAGACGTCATGTCAGTCTTGATGAAATATTTATTTATAAAACAGCGATGCTATTCATCGCGAGGGAAATCATCCCGAGGCTCTCCCGAAAGTATTTCCTAGTTATAATTGTGCAACTGAATAAAAGGCTGAAATAGTGGAATTCAGTTGGCAATGGTGTTATGTAGTACAATTACATATATCGGGATAATTCGGGATAAATTTAAGTCGGGATGATTAGCATTTTTCTTTATAAAATTAGGTTTGAAATCAAAAACAAGAAGAAAATGTGTGTAAATAATCATATTTGATGTCATAAACACTTTTTGATATATCAACTCAATGTTAAATGGTGCATAAACAATTTTTAACGAAGATTGCTGGAAAAAATGAGTAACAATATAAATATTCTATACCTAAATGATCAATTTGCAAAAAAATAAAACTTAAAAATCTATTTGTAACACAAAAACTTAAAAACTAACTTGCTATAATCATCTAATTTAATTAATTTTATATAATTTAGAGACTAAATTATACTCCCCCCGTCCCGCAATAGATGTGTAACTTAAAAATGAGTAACAATATAAATATTCTATACCTAAATGATCAATTTGCAACAAAATAAAACTTAAAAATCTATGTGTAATTTTGACCTAACTTACTTTGACCATATTTTTCTACTAATATACAAAGATAAACAATATCATATAAGATGTCGTTAGAGTTGTCTCGATGAGTATTTTCAAAATATCAAATTTTCATAATTTTTTCTAATATATTATTCAAGATATTTAAGCTTAAAATTATGCATTGGCACGCGTAATAATGTCAACTATGTCAAGTATTATGAGACGGAGTGAGCATAGTTTAAAGAATAAATTAGAGAAAGTGATACTTGAAGAGATTAGATTGATGGTTTATTCCTCTTATATTGAATGTACATTTATATATTATAATTATAATAATACTTAGGAAGAGGGTGCTTTATAACTTTATAAAGCGAATCTTTGATGCAATTCTTGATCTCTTTGAACTCTTCTTTTCGGATTCGGATTCCATGACTTTATTGAGGGAAAAGTTATGTGACTTTACTCAATATTAACCCTTGGTTTAATCTCATGGTTCAAAGCTTGACACATGTCCAGCCTATTTTGATTTAAAAAAAAAAATAAGTTGAGATCCATTTCACAAAACCCACCCATATGCCACCCAACCCATACCCATTGCCCTTCTGCAAACCGCCGCCTTAAGACCTCATTCACCGCCGTCGTGCTCGTTATGCGTCGCCGCGCTGCCGTCCTGTTCAGAACTTATTAGATAATTGAAAATCAATTTTCTCACACTGTCGAAATACGAAACAAAATTTTGCAACATGGAAGGATGAAGAAAGAATCAACTAAAATACAGAAGTGAAAACCCAAAGAAAAGCAACAGTGCGGATCCAAACACAGCGGCGAGAGAAGTCATAACAGCGGCGGCATATTGAAGCACGGTGGGTCGACGCAGCTGTTGGGTCAAGTTTTGTGGAATGGGTGTCAGGTTTGGCATGGTGGGAATCTCACGAATCTGAGAGCAGGACAGCGGCGCGTGAGGAACACGACATAGATCAACGGAGGTCTGAAGGAAGCAGTTTGTAGGAGGGCGATGAGTCATGAATACGGGTTGTATAGTATATGGGTATTGGGCTTTGTGAAATGAATTTCAACTTATTTTGTTTTTTGTTTTTTAACACAAAACAGGCTGGGACATGTGTCAAGCTTTGAACCATGAGATTAAACCAAGGGTCAATATTGAGTAAAGTCACATAACTTTTTCCTCAATAAAGTCATGGAATCCGGGTCCCTTCTTTTCAGTCACATAAGGCTGAATCTGATCATGAACCACTTTAATATTTTCTTTTATTAAAGATGTTGGTTCAGAAGGAGGCACAATCATAACTTCAAATGATCTTTTTATCATTTTTTACTTCAATCTCATGTTCTGTATAGTAATCTAATTCTAATTACCCTTTTTGTTATGAAAACTTTTCAGCTACACAAGAGGAAGCAGGTGAAGCCTATGACATTGCTGCTATAAAATTCAGAGGAGCAAATGCTGTTACTAATTTTGATATAACAAAATATGACGTGGAGAAAATTATTTCAAGCCCTAACCTTCTTAGCAGTGAAGAAGCTAGGAGAAATAAAAAAATGGATGATGTAATTAACAATAATAAACCATGTACGTTTGAAGACATGGAAGAAGCAATTCCAGTGCAGAAAAGATGCAAAATTCAACCATTCTCAATAAATAACATATATGATGAAGAAGAAGTAGAGGAATCAAATAGAGTGCATATGTCAAATCCTTCTTCAATTGTGACAAGTTTGAGCAGTTCAAGAGAAGAAAGCCCTGAAAACATGACAAGCTTACCAATGCTCTTTGGAATGACTTCAACAGCATCAATAATGTCTTCATTTTCTTTGCCTCAGATGCCACTGTCTGTTTTTGCTGCGTGGACCGATGCATAA
Protein sequence

>MS.gene43516.t1

MKFMENIEDTFSLNNQNSNIFGLSFSSQMNIGAPSTTAAEAVPTGFYYQPTPLHNYGYYYGYESEHVGLYSALPIMHDGSQAQAMGISHYGCSTKEEMQVSIDSIFNNQTSYHEPNNLNNLNHVQENTSLLGSLAEHQKQQLSCYTVLRNDNVILDGPTKYQLEDNVQLPNIVEDEIFDLRRWVSRDFHAATSHAQVSNTRVLSASPSSQSSCVTSSQQTSPIDTASVDTMKRKHQMVNLKKNQNQTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQARKGKQVYLGGYDIEEKAARAYDMAALKYWGPSTRINFPLENYQKELKEMKKMTRLEYVAHLRRKSSGFSRGASMYRGVTSRHHQHGRWQARIGRVAGNKDLYLGTFTTQEEAGEAYDIAAIKFRGANAVTNFDITKYDVEKIISSPNLLSSEEARRNKKMDDVINNNKPCTFEDMEEAIPVQKRCKIQPFSINNIYDEEEVEESNRVHMSNPSSIVTSLSSSREESPENMTSLPMLFGMTSTASIMSSFSLPQMPLSVFAAWTDA