Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene43780.t1 | XP_013467478.1 | 71.8 | 1201 | 296 | 4 | 30 | 1215 | 32 | 1204 | 0.00E+00 | 1405.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene43780.t1 | Q56YN8 | 57.4 | 1200 | 467 | 5 | 30 | 1213 | 32 | 1203 | 0.0e+00 | 1147.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene43780.t1 | A0A072VIT6 | 71.8 | 1201 | 296 | 4 | 30 | 1215 | 56 | 1228 | 0.0e+00 | 1405.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene43780 | MS.gene016667 | PPI |
MS.gene43780 | MS.gene45748 | PPI |
MS.gene43780 | MS.gene033508 | PPI |
MS.gene43780 | MS.gene058789 | PPI |
MS.gene43780 | MS.gene95250 | PPI |
MS.gene43780 | MS.gene036083 | PPI |
MS.gene43780 | MS.gene056169 | PPI |
MS.gene43780 | MS.gene024068 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene43780.t1 | MTR_1g051825 | 79.767 | 1201 | 200 | 4 | 30 | 1215 | 32 | 1204 | 0.0 | 1859 |
MS.gene43780.t1 | MTR_1g051825 | 79.767 | 1201 | 200 | 4 | 30 | 1215 | 56 | 1228 | 0.0 | 1859 |
MS.gene43780.t1 | MTR_3g110058 | 59.253 | 589 | 166 | 6 | 120 | 707 | 1 | 516 | 0.0 | 603 |
MS.gene43780.t1 | MTR_3g110055 | 66.814 | 452 | 132 | 3 | 715 | 1148 | 3 | 454 | 0.0 | 543 |
MS.gene43780.t1 | MTR_8g037325 | 24.102 | 1253 | 723 | 48 | 30 | 1183 | 32 | 1155 | 1.74e-46 | 182 |
MS.gene43780.t1 | MTR_5g086975 | 70.833 | 120 | 33 | 1 | 231 | 350 | 50 | 167 | 3.66e-41 | 154 |
MS.gene43780.t1 | MTR_5g086975 | 66.667 | 90 | 17 | 1 | 434 | 523 | 170 | 246 | 2.88e-25 | 107 |
MS.gene43780.t1 | MTR_8g072890 | 22.292 | 1274 | 763 | 42 | 30 | 1185 | 45 | 1209 | 2.63e-34 | 144 |
MS.gene43780.t1 | MTR_5g087290 | 76.623 | 77 | 18 | 0 | 447 | 523 | 1 | 77 | 7.16e-30 | 115 |
MS.gene43780.t1 | MTR_0003s0460 | 25.258 | 677 | 374 | 32 | 543 | 1138 | 509 | 1134 | 2.56e-16 | 85.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene43780.t1 | AT2G27170 | 61.116 | 1201 | 423 | 5 | 30 | 1214 | 32 | 1204 | 0.0 | 1405 |
MS.gene43780.t1 | AT2G27170 | 61.116 | 1201 | 423 | 5 | 30 | 1214 | 32 | 1204 | 0.0 | 1405 |
MS.gene43780.t1 | AT2G27170 | 59.654 | 1041 | 389 | 2 | 30 | 1061 | 32 | 1050 | 0.0 | 1196 |
MS.gene43780.t1 | AT2G27170 | 59.654 | 1041 | 389 | 2 | 30 | 1061 | 32 | 1050 | 0.0 | 1196 |
MS.gene43780.t1 | AT5G62410 | 25.037 | 679 | 431 | 23 | 542 | 1183 | 518 | 1155 | 1.28e-26 | 119 |
MS.gene43780.t1 | AT5G62410 | 28.163 | 245 | 156 | 7 | 30 | 257 | 32 | 273 | 6.08e-19 | 94.0 |
MS.gene43780.t1 | AT3G47460 | 31.414 | 191 | 121 | 6 | 30 | 213 | 32 | 219 | 2.73e-19 | 95.1 |
MS.gene43780.t1 | AT3G47460 | 31.414 | 191 | 121 | 6 | 30 | 213 | 32 | 219 | 2.97e-19 | 94.7 |
MS.gene43780.t1 | AT3G54670 | 22.600 | 677 | 392 | 22 | 543 | 1138 | 519 | 1144 | 7.67e-17 | 87.0 |
Find 188 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGCAAATCTCAAAACATTTC+TGG | 0.160443 | 5.1:+54420506 | MS.gene43780:CDS |
CCTTGTTGTACAACATAATA+TGG | 0.190231 | 5.1:-54414992 | None:intergenic |
TTGAACTTCTTTGTTATATA+TGG | 0.195435 | 5.1:-54415763 | None:intergenic |
AATCATCTTAACCGACAAAA+AGG | 0.214785 | 5.1:+54420880 | MS.gene43780:CDS |
CAAATTATTCTCCAGATCTT+TGG | 0.251481 | 5.1:-54417229 | None:intergenic |
AAGAGTATACCAAGAAAATA+AGG | 0.255492 | 5.1:+54424497 | MS.gene43780:CDS |
CCGGACAATTTGTTCGAAAA+AGG | 0.266191 | 5.1:+54414742 | MS.gene43780:CDS |
ACAAGTGCTTTAGAAAATAA+TGG | 0.275883 | 5.1:-54423576 | None:intergenic |
TTGTATATTATAGGTCCTTA+TGG | 0.278779 | 5.1:+54419481 | MS.gene43780:intron |
ACCTCCCGACAACTGCTTCA+TGG | 0.293775 | 5.1:-54427591 | None:intergenic |
TAAGCTGTTCAATCTGATTC+TGG | 0.295580 | 5.1:-54423743 | None:intergenic |
GCAAAATGAATCAATCCTAT+TGG | 0.296545 | 5.1:+54412848 | None:intergenic |
ACTGTCAGCATTCTGCTTAA+TGG | 0.299928 | 5.1:-54422424 | None:intergenic |
TCACCACAACTGCCACAATT+TGG | 0.307007 | 5.1:-54418814 | None:intergenic |
TTGGATTTACTGAAGGAAAT+AGG | 0.309154 | 5.1:+54415160 | MS.gene43780:CDS |
TGCATGAGAAATATAATTTC+AGG | 0.314429 | 5.1:+54428160 | MS.gene43780:CDS |
TCAAAGATGAAATTAATAAA+TGG | 0.315740 | 5.1:+54424307 | MS.gene43780:CDS |
CAGGTTAGCAACTCAATAAT+TGG | 0.323752 | 5.1:-54420539 | None:intergenic |
CAAAACATTTCTGGAGTTCA+TGG | 0.331205 | 5.1:+54420515 | MS.gene43780:CDS |
TGAAACTGAAGGCCTTAAAA+AGG | 0.333096 | 5.1:+54423860 | MS.gene43780:CDS |
TCCACAAATGCAGATAAAAC+TGG | 0.333767 | 5.1:-54413389 | None:intergenic |
AACAGTTATCTGCAAGAATC+TGG | 0.344787 | 5.1:+54422185 | MS.gene43780:CDS |
CAGACACAAAATGCTGATTA+AGG | 0.350936 | 5.1:+54428691 | MS.gene43780:CDS |
TGATGAGATTGATGCTGCTT+TGG | 0.351240 | 5.1:+54427685 | MS.gene43780:CDS |
AACTGAAGTGATGAATTTAC+TGG | 0.352491 | 5.1:+54414943 | MS.gene43780:CDS |
CAGAGGCTTTCATCAAGGTT+AGG | 0.353698 | 5.1:-54415132 | None:intergenic |
AAAGGTGTTGCTATGCATTT+CGG | 0.353997 | 5.1:+54425497 | MS.gene43780:CDS |
TACCAAGAAAATAAGGGAAC+TGG | 0.370065 | 5.1:+54424504 | MS.gene43780:CDS |
CGAGTATAATAGAAAACTTC+AGG | 0.372965 | 5.1:+54424414 | MS.gene43780:CDS |
AAAAGAAGCAATGGATGAAC+TGG | 0.387455 | 5.1:+54417534 | MS.gene43780:CDS |
AAAGTTGCCGACAAGATATA+TGG | 0.389830 | 5.1:+54428592 | MS.gene43780:CDS |
TTCTAAAGCACTTGTAAAGA+AGG | 0.389908 | 5.1:+54423584 | MS.gene43780:CDS |
TAGAACAAAGATTAATACTT+TGG | 0.393318 | 5.1:+54419300 | MS.gene43780:CDS |
CAAAATGAATCAATCCTATT+GGG | 0.396459 | 5.1:+54412849 | None:intergenic |
TCAGGAAGAAGCTAAAGAAT+TGG | 0.400137 | 5.1:+54424432 | MS.gene43780:CDS |
TGCTCTAGAATTCATTAATC+AGG | 0.401763 | 5.1:+54428666 | MS.gene43780:CDS |
AAAATCAATTTCTTTAAAAG+AGG | 0.413608 | 5.1:-54420979 | None:intergenic |
TTCTTTCTCCCTGCTCCATA+AGG | 0.418106 | 5.1:-54419496 | None:intergenic |
TAAAGAATTGGAGCAATTGC+TGG | 0.419077 | 5.1:+54424444 | MS.gene43780:CDS |
AGTCTCAATGATACAATTCC+TGG | 0.423849 | 5.1:+54419570 | MS.gene43780:CDS |
AGTCAAAGAGTCAGGAACTT+AGG | 0.426313 | 5.1:+54424111 | MS.gene43780:CDS |
AATATTCTCTGAACTTGTAC+AGG | 0.426667 | 5.1:+54425523 | MS.gene43780:CDS |
GGAGATTGTTGATCTTGAAC+AGG | 0.433134 | 5.1:+54417986 | MS.gene43780:CDS |
GCAGTTGGTGCTAATGGATC+TGG | 0.438920 | 5.1:+54413024 | MS.gene43780:intron |
GAATCAGATTGAACAGCTTA+AGG | 0.440247 | 5.1:+54423746 | MS.gene43780:CDS |
TGAACCAGACCATCATATAT+AGG | 0.445765 | 5.1:-54417568 | None:intergenic |
AAGTATTAATCTTTGTTCTA+CGG | 0.445807 | 5.1:-54419297 | None:intergenic |
AAGAGAATGTACTTCCCAAT+AGG | 0.447603 | 5.1:-54412863 | None:intergenic |
TTGAAGTTACTGCAGGAAAC+AGG | 0.450106 | 5.1:+54420585 | MS.gene43780:CDS |
AGAAGAAAAGAAAGCGGGGC+TGG | 0.453734 | 5.1:+54423995 | MS.gene43780:CDS |
TCGGCAACTTTCACTAGCTC+TGG | 0.455767 | 5.1:-54428580 | None:intergenic |
CTACACTCCAGCTTTCAATC+AGG | 0.456099 | 5.1:+54421011 | MS.gene43780:CDS |
AGGTGGTACTAGAGTTTATG+AGG | 0.456658 | 5.1:+54415180 | MS.gene43780:CDS |
TCAAAAGCATCTGATGTCAA+TGG | 0.456925 | 5.1:-54424529 | None:intergenic |
CAGTCCTATATATGATGGTC+TGG | 0.457209 | 5.1:+54417564 | MS.gene43780:CDS |
CGCTGTATCACATCTCTGTA+TGG | 0.459501 | 5.1:-54427648 | None:intergenic |
GGTAGCTCGTACCAATGGTT+TGG | 0.459742 | 5.1:+54422221 | MS.gene43780:CDS |
TATTTGGCTGCAGTCTTTGG+AGG | 0.461113 | 5.1:+54424390 | MS.gene43780:intron |
GAGAAAATAATGAAAGATAC+AGG | 0.463056 | 5.1:+54415220 | MS.gene43780:CDS |
AGAGTATACCAAGAAAATAA+GGG | 0.463899 | 5.1:+54424498 | MS.gene43780:CDS |
CTTCTAAATACCGTACAACT+TGG | 0.465610 | 5.1:-54415656 | None:intergenic |
ACTCAGTATTCTCTATCAAA+AGG | 0.467229 | 5.1:+54417908 | MS.gene43780:CDS |
GTCAAAGAGTCAGGAACTTA+GGG | 0.469685 | 5.1:+54424112 | MS.gene43780:CDS |
GAACTTGTACAGGGCGGCTA+TGG | 0.472971 | 5.1:+54425533 | MS.gene43780:CDS |
ATTATAGGTCCTTATGGAGC+AGG | 0.473106 | 5.1:+54419487 | MS.gene43780:intron |
TAATACTTTGGAATTTCAAA+CGG | 0.473321 | 5.1:+54419312 | MS.gene43780:CDS |
AGAGGCTTTCATCAAGGTTA+GGG | 0.474689 | 5.1:-54415131 | None:intergenic |
ATTCAACCCTTCACGTGACT+TGG | 0.477319 | 5.1:-54419335 | None:intergenic |
ACAGGGCGGCTATGGTCATC+TGG | 0.479869 | 5.1:+54425541 | MS.gene43780:CDS |
GATGAAAGCCTCTGAGCGAT+TGG | 0.480648 | 5.1:+54415141 | MS.gene43780:CDS |
CAATCCATGAAGCAGTTGTC+GGG | 0.486486 | 5.1:+54427587 | MS.gene43780:CDS |
TGACAAGCAGAGAAAATCCT+TGG | 0.487457 | 5.1:+54415734 | MS.gene43780:CDS |
TATTTCTTCTTCAGGAGTAT+CGG | 0.488133 | 5.1:+54424248 | MS.gene43780:intron |
CGGCAGCAACACTACAGCTT+CGG | 0.488190 | 5.1:-54418786 | None:intergenic |
GGAGCATTTACTCTGTTAAG+TGG | 0.489316 | 5.1:-54420922 | None:intergenic |
TGTCACTCCATATATCTTGT+CGG | 0.495905 | 5.1:-54428599 | None:intergenic |
CTAATCTAACCACAAATCTC+AGG | 0.496856 | 5.1:+54424021 | MS.gene43780:CDS |
CCGTGATCAGTGGCTTCAAA+AGG | 0.499582 | 5.1:+54417965 | MS.gene43780:CDS |
ACATGAGAAATCCAAAGATC+TGG | 0.499595 | 5.1:+54417218 | MS.gene43780:CDS |
GTTATATATGGCATATTCCA+AGG | 0.501813 | 5.1:-54415751 | None:intergenic |
CAAAAGCATCTGATGTCAAT+GGG | 0.501917 | 5.1:-54424528 | None:intergenic |
TGATGCTGAGTCAAAGAGTC+AGG | 0.503666 | 5.1:+54424103 | MS.gene43780:CDS |
CAGGAGAAGAAAACAAGAGC+TGG | 0.505253 | 5.1:+54424040 | MS.gene43780:CDS |
GAATCTGGATGTGGCTTCAA+AGG | 0.507465 | 5.1:+54422200 | MS.gene43780:CDS |
ACTTAGGGATGCTAAAGGAT+TGG | 0.507728 | 5.1:+54424127 | MS.gene43780:CDS |
GGAACTAGATGAAGAGAAAG+AGG | 0.511213 | 5.1:+54415689 | MS.gene43780:CDS |
TCGCTCAGAGGCTTTCATCA+AGG | 0.512814 | 5.1:-54415137 | None:intergenic |
AAAATCAGTCCTATATATGA+TGG | 0.518190 | 5.1:+54417559 | MS.gene43780:CDS |
TCACATCAAAGAGGAGGACT+TGG | 0.518359 | 5.1:+54422449 | MS.gene43780:CDS |
AATTACATGGAATAAACATA+AGG | 0.520111 | 5.1:-54412921 | None:intergenic |
TTCTCTTTACAGGAAGGGGC+TGG | 0.525303 | 5.1:+54413362 | MS.gene43780:intron |
GGTCTCACAGATAGACCAAA+AGG | 0.525758 | 5.1:+54423446 | MS.gene43780:intron |
ATGAATTTACTGGAAAGTGC+TGG | 0.527499 | 5.1:+54414953 | MS.gene43780:CDS |
CAGAAAGAAGAAAAGAAAGC+GGG | 0.529093 | 5.1:+54423990 | MS.gene43780:intron |
AAGCTAACCTGATTGAAAGC+TGG | 0.529389 | 5.1:-54421018 | None:intergenic |
TTGCAAGAATGATCGTATTG+AGG | 0.530772 | 5.1:+54423893 | MS.gene43780:CDS |
ACTGCAGTTGAAGTTACTGC+AGG | 0.531496 | 5.1:+54420578 | MS.gene43780:CDS |
ATCAAGACAAGGATGGTCCT+CGG | 0.532506 | 5.1:+54426871 | MS.gene43780:CDS |
TCAATAGAACGCACTTTCAA+AGG | 0.535025 | 5.1:+54425479 | MS.gene43780:CDS |
ACAATCCATGAAGCAGTTGT+CGG | 0.538680 | 5.1:+54427586 | MS.gene43780:CDS |
GCTGCCGCTGCTCCAAATTG+TGG | 0.543612 | 5.1:+54418802 | MS.gene43780:CDS |
TTTATGATCACAGACGATCA+AGG | 0.543698 | 5.1:+54422385 | MS.gene43780:CDS |
TGAACTTGATGCAGGAAAAG+AGG | 0.544149 | 5.1:+54424981 | MS.gene43780:CDS |
GAAAGAAATAAAAGAAGCAA+TGG | 0.545282 | 5.1:+54417525 | MS.gene43780:CDS |
AGATATCACATTAACACGGC+TGG | 0.547116 | 5.1:-54428635 | None:intergenic |
CAGAGATAGAAGAGCTTAAG+CGG | 0.550591 | 5.1:+54423526 | MS.gene43780:CDS |
AGAACATACGCAGTGAGGAT+AGG | 0.551199 | 5.1:+54413228 | MS.gene43780:CDS |
CCATATTATGTTGTACAACA+AGG | 0.554517 | 5.1:+54414992 | MS.gene43780:CDS |
AGACAAGCTGAACTTGATGC+AGG | 0.558384 | 5.1:+54424973 | MS.gene43780:CDS |
CCACAGTACAGAACTGCTGT+TGG | 0.558872 | 5.1:+54427710 | MS.gene43780:CDS |
TCAAGACAAGGATGGTCCTC+GGG | 0.560459 | 5.1:+54426872 | MS.gene43780:CDS |
TGAGCGATTGGATTTACTGA+AGG | 0.561514 | 5.1:+54415153 | MS.gene43780:CDS |
CAGGAACTTAGGGATGCTAA+AGG | 0.564377 | 5.1:+54424122 | MS.gene43780:CDS |
GCTCTCTTCAAACACGGCAC+AGG | 0.572042 | 5.1:+54418010 | MS.gene43780:CDS |
ACTGAGAGCAGAAGTTGAGA+AGG | 0.575102 | 5.1:+54419539 | MS.gene43780:CDS |
TCAAAGGTAGCTCGTACCAA+TGG | 0.575939 | 5.1:+54422216 | MS.gene43780:CDS |
CAAACGGCCAAGTCACGTGA+AGG | 0.576112 | 5.1:+54419328 | MS.gene43780:CDS |
ATTATATTTCTCATGCAATG+AGG | 0.576411 | 5.1:-54428154 | None:intergenic |
TTCTAAATACCGTACAACTT+GGG | 0.577194 | 5.1:-54415655 | None:intergenic |
CCTCGGGAAGAAAAGTCAAA+GGG | 0.578528 | 5.1:+54426888 | MS.gene43780:CDS |
CCACAAATGCAGATAAAACT+GGG | 0.578954 | 5.1:-54413388 | None:intergenic |
AACAAATTACCCAAGTTGTA+CGG | 0.579284 | 5.1:+54415646 | MS.gene43780:CDS |
TTGGACTGCATAACACTGGA+AGG | 0.580092 | 5.1:+54422240 | MS.gene43780:CDS |
AGTATTCTCTATCAAAAGGA+AGG | 0.583074 | 5.1:+54417912 | MS.gene43780:CDS |
TCTGTGATCATAAAATCCTC+CGG | 0.586231 | 5.1:-54422376 | None:intergenic |
GCTCCAAATTGTGGCAGTTG+TGG | 0.587147 | 5.1:+54418811 | MS.gene43780:CDS |
GGGAGAGTAGAAAACTACAT+TGG | 0.588863 | 5.1:+54426909 | MS.gene43780:CDS |
TGTTATGCAGTCCAAACCAT+TGG | 0.589083 | 5.1:-54422232 | None:intergenic |
ACCAAGAAAATAAGGGAACT+GGG | 0.589324 | 5.1:+54424505 | MS.gene43780:CDS |
TAATTTGAAAGATATAATGA+AGG | 0.590282 | 5.1:+54417245 | MS.gene43780:CDS |
TTGTACGGTATTTAGAAGAG+AGG | 0.592298 | 5.1:+54415661 | MS.gene43780:CDS |
GCTGATGATGACTCTTTGCA+TGG | 0.599425 | 5.1:+54424080 | MS.gene43780:CDS |
ATGTGCAGGATGTTAGAAGA+GGG | 0.599871 | 5.1:+54420462 | MS.gene43780:intron |
TCATCTGGATATGATGAAGA+AGG | 0.600551 | 5.1:+54425556 | MS.gene43780:CDS |
TATCTGCAAGAATCTGGATG+TGG | 0.602042 | 5.1:+54422191 | MS.gene43780:CDS |
TGAATTTACTGGAAAGTGCT+GGG | 0.602515 | 5.1:+54414954 | MS.gene43780:CDS |
GAAACGGTCTTCTTGATGAG+AGG | 0.605497 | 5.1:+54419374 | MS.gene43780:CDS |
AGAGATAGAAGAGCTTAAGC+GGG | 0.605946 | 5.1:+54423527 | MS.gene43780:CDS |
TCCTCGGGAAGAAAAGTCAA+AGG | 0.606665 | 5.1:+54426887 | MS.gene43780:CDS |
AGATGAAATTAATAAATGGA+AGG | 0.606754 | 5.1:+54424311 | MS.gene43780:CDS |
TTATGTTGTACAACAAGGAA+AGG | 0.607085 | 5.1:+54414997 | MS.gene43780:CDS |
TGAAATGCGTGGCTGTGATA+CGG | 0.607154 | 5.1:+54419264 | MS.gene43780:CDS |
TTATAGGTCCTTATGGAGCA+GGG | 0.607493 | 5.1:+54419488 | MS.gene43780:intron |
GTAAAGCTGCCCGTGATCAG+TGG | 0.608367 | 5.1:+54417955 | MS.gene43780:CDS |
GTATGGCAAAGATAAGTGCA+AGG | 0.617710 | 5.1:-54427631 | None:intergenic |
TGCTCAGCTAAAGCTTGCAG+AGG | 0.618147 | 5.1:+54415788 | MS.gene43780:CDS |
GACTGGAACCATGAAACTGA+AGG | 0.618440 | 5.1:+54423849 | MS.gene43780:CDS |
ATCACTCAACACGAAACGAA+TGG | 0.624342 | 5.1:-54413198 | None:intergenic |
TAATTCAGACAATCGTATCC+CGG | 0.625351 | 5.1:+54413424 | MS.gene43780:CDS |
TGGTTTGGACTGCATAACAC+TGG | 0.626774 | 5.1:+54422236 | MS.gene43780:CDS |
AACAGTGCTAGATCAACAGA+AGG | 0.627814 | 5.1:+54425451 | MS.gene43780:CDS |
AAACGGCCAAGTCACGTGAA+GGG | 0.631549 | 5.1:+54419329 | MS.gene43780:CDS |
CATTGACCATTTAACGCCAG+AGG | 0.631987 | 5.1:+54423809 | MS.gene43780:CDS |
GTACTAGAGTTTATGAGGAG+AGG | 0.632212 | 5.1:+54415185 | MS.gene43780:CDS |
CTCTGTGGATAAGTGATGCG+TGG | 0.632709 | 5.1:-54420943 | None:intergenic |
GAGAAGAAAACAAGAGCTGG+AGG | 0.634923 | 5.1:+54424043 | MS.gene43780:CDS |
CAGTAAATCCAATCGCTCAG+AGG | 0.636170 | 5.1:-54415149 | None:intergenic |
TAGAATCATGAAGCACGAGA+AGG | 0.636405 | 5.1:+54417884 | MS.gene43780:intron |
TTGCTTAATGTTGAAATGCG+TGG | 0.638129 | 5.1:+54419253 | MS.gene43780:CDS |
GATGATGATCAAGACAAGGA+TGG | 0.640563 | 5.1:+54426864 | MS.gene43780:CDS |
AATGTGCAGGATGTTAGAAG+AGG | 0.642397 | 5.1:+54420461 | MS.gene43780:intron |
CAACTTTCACTAGCTCTGGA+CGG | 0.648302 | 5.1:-54428576 | None:intergenic |
TCCATGAAGCAGTTGTCGGG+AGG | 0.652613 | 5.1:+54427590 | MS.gene43780:CDS |
ACTGCCACAATTTGGAGCAG+CGG | 0.653453 | 5.1:-54418806 | None:intergenic |
CTACATTGGAGTGAAAGTGA+AGG | 0.657266 | 5.1:+54426923 | MS.gene43780:CDS |
TATGGCAAAGATAAGTGCAA+GGG | 0.657792 | 5.1:-54427630 | None:intergenic |
GCAGAAAGAAGAAAAGAAAG+CGG | 0.658598 | 5.1:+54423989 | MS.gene43780:intron |
ATATTCTCTGAACTTGTACA+GGG | 0.659628 | 5.1:+54425524 | MS.gene43780:CDS |
AGGTGGAAGTGCACTTACGC+CGG | 0.660317 | 5.1:+54414723 | MS.gene43780:CDS |
CTGTGAATAGGTTGACAAGG+TGG | 0.661440 | 5.1:+54414706 | MS.gene43780:intron |
GATCATTCTTGCAAGCAACA+AGG | 0.666516 | 5.1:-54423884 | None:intergenic |
CAGTATTCACATCAAAGAGG+AGG | 0.672571 | 5.1:+54422443 | MS.gene43780:CDS |
ACAGGTGCTCTCTTCAAACA+CGG | 0.686036 | 5.1:+54418004 | MS.gene43780:CDS |
GATTTACTGAAGGAAATAGG+TGG | 0.687534 | 5.1:+54415163 | MS.gene43780:CDS |
CTTTCAGAACATACGCAGTG+AGG | 0.687820 | 5.1:+54413223 | MS.gene43780:CDS |
GTATTTAGAAGAGAGGCTGA+AGG | 0.688568 | 5.1:+54415668 | MS.gene43780:CDS |
TGACAGTATTCACATCAAAG+AGG | 0.689556 | 5.1:+54422440 | MS.gene43780:CDS |
CCAACAGCAGTTCTGTACTG+TGG | 0.690057 | 5.1:-54427710 | None:intergenic |
TTAGGATGATGATCAAGACA+AGG | 0.694709 | 5.1:+54426860 | MS.gene43780:intron |
TGTCTGTGAATAGGTTGACA+AGG | 0.695392 | 5.1:+54414703 | MS.gene43780:intron |
TTCTCTGAACTTGTACAGGG+CGG | 0.695410 | 5.1:+54425527 | MS.gene43780:CDS |
CTTGTAGGAGAAATCGCGTG+AGG | 0.698612 | 5.1:+54423716 | MS.gene43780:intron |
GGTTGTTGAAAATGATGACA+AGG | 0.702620 | 5.1:+54420843 | MS.gene43780:CDS |
AGAAAGAAGAAAAGAAAGCG+GGG | 0.716453 | 5.1:+54423991 | MS.gene43780:intron |
GACATGATAGGTACAAACAG+AGG | 0.718579 | 5.1:+54424824 | MS.gene43780:intron |
TCTCAGATATCACATTAACA+CGG | 0.733641 | 5.1:-54428639 | None:intergenic |
CTCGGGAAGAAAAGTCAAAG+GGG | 0.734165 | 5.1:+54426889 | MS.gene43780:CDS |
GGTTTGACATCAGAACTCTG+TGG | 0.762292 | 5.1:-54420958 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.1 | gene | 54412853 | 54428711 | 54412853 | ID=MS.gene43780 |
chr5.1 | mRNA | 54412853 | 54428711 | 54412853 | ID=MS.gene43780.t1;Parent=MS.gene43780 |
chr5.1 | exon | 54412853 | 54412937 | 54412853 | ID=MS.gene43780.t1.exon1;Parent=MS.gene43780.t1 |
chr5.1 | CDS | 54412853 | 54412937 | 54412853 | ID=cds.MS.gene43780.t1;Parent=MS.gene43780.t1 |
chr5.1 | exon | 54413028 | 54413066 | 54413028 | ID=MS.gene43780.t1.exon2;Parent=MS.gene43780.t1 |
chr5.1 | CDS | 54413028 | 54413066 | 54413028 | ID=cds.MS.gene43780.t1;Parent=MS.gene43780.t1 |
chr5.1 | exon | 54413198 | 54413265 | 54413198 | ID=MS.gene43780.t1.exon3;Parent=MS.gene43780.t1 |
chr5.1 | CDS | 54413198 | 54413265 | 54413198 | ID=cds.MS.gene43780.t1;Parent=MS.gene43780.t1 |
chr5.1 | exon | 54413374 | 54413445 | 54413374 | ID=MS.gene43780.t1.exon4;Parent=MS.gene43780.t1 |
chr5.1 | CDS | 54413374 | 54413445 | 54413374 | ID=cds.MS.gene43780.t1;Parent=MS.gene43780.t1 |
chr5.1 | exon | 54414716 | 54414795 | 54414716 | ID=MS.gene43780.t1.exon5;Parent=MS.gene43780.t1 |
chr5.1 | CDS | 54414716 | 54414795 | 54414716 | ID=cds.MS.gene43780.t1;Parent=MS.gene43780.t1 |
chr5.1 | exon | 54414940 | 54415018 | 54414940 | ID=MS.gene43780.t1.exon6;Parent=MS.gene43780.t1 |
chr5.1 | CDS | 54414940 | 54415018 | 54414940 | ID=cds.MS.gene43780.t1;Parent=MS.gene43780.t1 |
chr5.1 | exon | 54415124 | 54415241 | 54415124 | ID=MS.gene43780.t1.exon7;Parent=MS.gene43780.t1 |
chr5.1 | CDS | 54415124 | 54415241 | 54415124 | ID=cds.MS.gene43780.t1;Parent=MS.gene43780.t1 |
chr5.1 | exon | 54415634 | 54415809 | 54415634 | ID=MS.gene43780.t1.exon8;Parent=MS.gene43780.t1 |
chr5.1 | CDS | 54415634 | 54415809 | 54415634 | ID=cds.MS.gene43780.t1;Parent=MS.gene43780.t1 |
chr5.1 | exon | 54417153 | 54417398 | 54417153 | ID=MS.gene43780.t1.exon9;Parent=MS.gene43780.t1 |
chr5.1 | CDS | 54417153 | 54417398 | 54417153 | ID=cds.MS.gene43780.t1;Parent=MS.gene43780.t1 |
chr5.1 | exon | 54417493 | 54417614 | 54417493 | ID=MS.gene43780.t1.exon10;Parent=MS.gene43780.t1 |
chr5.1 | CDS | 54417493 | 54417614 | 54417493 | ID=cds.MS.gene43780.t1;Parent=MS.gene43780.t1 |
chr5.1 | exon | 54417887 | 54418031 | 54417887 | ID=MS.gene43780.t1.exon11;Parent=MS.gene43780.t1 |
chr5.1 | CDS | 54417887 | 54418031 | 54417887 | ID=cds.MS.gene43780.t1;Parent=MS.gene43780.t1 |
chr5.1 | exon | 54418767 | 54418832 | 54418767 | ID=MS.gene43780.t1.exon12;Parent=MS.gene43780.t1 |
chr5.1 | CDS | 54418767 | 54418832 | 54418767 | ID=cds.MS.gene43780.t1;Parent=MS.gene43780.t1 |
chr5.1 | exon | 54419226 | 54419398 | 54419226 | ID=MS.gene43780.t1.exon13;Parent=MS.gene43780.t1 |
chr5.1 | CDS | 54419226 | 54419398 | 54419226 | ID=cds.MS.gene43780.t1;Parent=MS.gene43780.t1 |
chr5.1 | exon | 54419494 | 54419593 | 54419494 | ID=MS.gene43780.t1.exon14;Parent=MS.gene43780.t1 |
chr5.1 | CDS | 54419494 | 54419593 | 54419494 | ID=cds.MS.gene43780.t1;Parent=MS.gene43780.t1 |
chr5.1 | exon | 54420470 | 54420606 | 54420470 | ID=MS.gene43780.t1.exon15;Parent=MS.gene43780.t1 |
chr5.1 | CDS | 54420470 | 54420606 | 54420470 | ID=cds.MS.gene43780.t1;Parent=MS.gene43780.t1 |
chr5.1 | exon | 54420831 | 54421032 | 54420831 | ID=MS.gene43780.t1.exon16;Parent=MS.gene43780.t1 |
chr5.1 | CDS | 54420831 | 54421032 | 54420831 | ID=cds.MS.gene43780.t1;Parent=MS.gene43780.t1 |
chr5.1 | exon | 54422174 | 54422261 | 54422174 | ID=MS.gene43780.t1.exon17;Parent=MS.gene43780.t1 |
chr5.1 | CDS | 54422174 | 54422261 | 54422174 | ID=cds.MS.gene43780.t1;Parent=MS.gene43780.t1 |
chr5.1 | exon | 54422346 | 54422470 | 54422346 | ID=MS.gene43780.t1.exon18;Parent=MS.gene43780.t1 |
chr5.1 | CDS | 54422346 | 54422470 | 54422346 | ID=cds.MS.gene43780.t1;Parent=MS.gene43780.t1 |
chr5.1 | exon | 54423456 | 54423605 | 54423456 | ID=MS.gene43780.t1.exon19;Parent=MS.gene43780.t1 |
chr5.1 | CDS | 54423456 | 54423605 | 54423456 | ID=cds.MS.gene43780.t1;Parent=MS.gene43780.t1 |
chr5.1 | exon | 54423723 | 54423914 | 54423723 | ID=MS.gene43780.t1.exon20;Parent=MS.gene43780.t1 |
chr5.1 | CDS | 54423723 | 54423914 | 54423723 | ID=cds.MS.gene43780.t1;Parent=MS.gene43780.t1 |
chr5.1 | exon | 54423993 | 54424176 | 54423993 | ID=MS.gene43780.t1.exon21;Parent=MS.gene43780.t1 |
chr5.1 | CDS | 54423993 | 54424176 | 54423993 | ID=cds.MS.gene43780.t1;Parent=MS.gene43780.t1 |
chr5.1 | exon | 54424262 | 54424332 | 54424262 | ID=MS.gene43780.t1.exon22;Parent=MS.gene43780.t1 |
chr5.1 | CDS | 54424262 | 54424332 | 54424262 | ID=cds.MS.gene43780.t1;Parent=MS.gene43780.t1 |
chr5.1 | exon | 54424403 | 54424554 | 54424403 | ID=MS.gene43780.t1.exon23;Parent=MS.gene43780.t1 |
chr5.1 | CDS | 54424403 | 54424554 | 54424403 | ID=cds.MS.gene43780.t1;Parent=MS.gene43780.t1 |
chr5.1 | exon | 54424834 | 54425002 | 54424834 | ID=MS.gene43780.t1.exon24;Parent=MS.gene43780.t1 |
chr5.1 | CDS | 54424834 | 54425002 | 54424834 | ID=cds.MS.gene43780.t1;Parent=MS.gene43780.t1 |
chr5.1 | exon | 54425434 | 54425577 | 54425434 | ID=MS.gene43780.t1.exon25;Parent=MS.gene43780.t1 |
chr5.1 | CDS | 54425434 | 54425577 | 54425434 | ID=cds.MS.gene43780.t1;Parent=MS.gene43780.t1 |
chr5.1 | exon | 54426864 | 54426944 | 54426864 | ID=MS.gene43780.t1.exon26;Parent=MS.gene43780.t1 |
chr5.1 | CDS | 54426864 | 54426944 | 54426864 | ID=cds.MS.gene43780.t1;Parent=MS.gene43780.t1 |
chr5.1 | exon | 54427560 | 54427734 | 54427560 | ID=MS.gene43780.t1.exon27;Parent=MS.gene43780.t1 |
chr5.1 | CDS | 54427560 | 54427734 | 54427560 | ID=cds.MS.gene43780.t1;Parent=MS.gene43780.t1 |
chr5.1 | exon | 54428143 | 54428181 | 54428143 | ID=MS.gene43780.t1.exon28;Parent=MS.gene43780.t1 |
chr5.1 | CDS | 54428143 | 54428181 | 54428143 | ID=cds.MS.gene43780.t1;Parent=MS.gene43780.t1 |
chr5.1 | exon | 54428542 | 54428711 | 54428542 | ID=MS.gene43780.t1.exon29;Parent=MS.gene43780.t1 |
chr5.1 | CDS | 54428542 | 54428711 | 54428542 | ID=cds.MS.gene43780.t1;Parent=MS.gene43780.t1 |
Gene Sequence |
Protein sequence |