Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43808.t1 | RYQ81366.1 | 53.2 | 633 | 225 | 6 | 81 | 653 | 63 | 684 | 1.20E-191 | 679.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43808.t1 | O03376 | 80.4 | 326 | 61 | 2 | 331 | 653 | 1 | 326 | 1.7e-149 | 531.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43808.t1 | A0A3Q7HT64 | 57.6 | 595 | 208 | 7 | 81 | 653 | 70 | 642 | 4.6e-193 | 684.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049283 | MS.gene43808 | 0.831456 | 1.65E-55 | -1.69E-46 |
| MS.gene054892 | MS.gene43808 | 0.819934 | 8.95E-53 | -1.69E-46 |
| MS.gene054893 | MS.gene43808 | 0.825196 | 5.35E-54 | -1.69E-46 |
| MS.gene054957 | MS.gene43808 | 0.808357 | 3.22E-50 | -1.69E-46 |
| MS.gene055150 | MS.gene43808 | 0.812864 | 3.42E-51 | -1.69E-46 |
| MS.gene057093 | MS.gene43808 | 0.810514 | 1.11E-50 | -1.69E-46 |
| MS.gene057622 | MS.gene43808 | 0.835618 | 1.51E-56 | -1.69E-46 |
| MS.gene05878 | MS.gene43808 | 0.815189 | 1.05E-51 | -1.69E-46 |
| MS.gene05952 | MS.gene43808 | 0.807119 | 5.91E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43808.t1 | MTR_5g070680 | 95.046 | 323 | 16 | 0 | 331 | 653 | 1 | 323 | 0.0 | 645 |
| MS.gene43808.t1 | MTR_5g070680 | 89.877 | 326 | 27 | 2 | 1 | 326 | 1 | 320 | 0.0 | 607 |
| MS.gene43808.t1 | MTR_5g070870 | 94.172 | 326 | 14 | 1 | 1 | 326 | 1 | 321 | 0.0 | 617 |
| MS.gene43808.t1 | MTR_5g070870 | 87.963 | 324 | 38 | 1 | 331 | 653 | 1 | 324 | 0.0 | 578 |
| MS.gene43808.t1 | MTR_4g094222 | 69.524 | 315 | 85 | 3 | 22 | 326 | 29 | 342 | 2.83e-157 | 456 |
| MS.gene43808.t1 | MTR_4g094222 | 66.770 | 322 | 92 | 1 | 347 | 653 | 24 | 345 | 9.96e-157 | 455 |
| MS.gene43808.t1 | MTR_5g026620 | 63.899 | 277 | 100 | 0 | 377 | 653 | 54 | 330 | 4.35e-133 | 394 |
| MS.gene43808.t1 | MTR_5g026620 | 63.571 | 280 | 97 | 2 | 51 | 326 | 49 | 327 | 4.96e-132 | 391 |
| MS.gene43808.t1 | MTR_5g026620 | 70.354 | 226 | 67 | 0 | 428 | 653 | 37 | 262 | 1.53e-118 | 354 |
| MS.gene43808.t1 | MTR_5g026620 | 70.404 | 223 | 66 | 0 | 104 | 326 | 37 | 259 | 4.79e-117 | 350 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43808.t1 | AT5G64210 | 69.258 | 283 | 82 | 3 | 376 | 653 | 71 | 353 | 6.96e-144 | 422 |
| MS.gene43808.t1 | AT5G64210 | 67.247 | 287 | 86 | 3 | 44 | 326 | 68 | 350 | 3.11e-141 | 416 |
| MS.gene43808.t1 | AT3G22370 | 66.052 | 271 | 92 | 0 | 56 | 326 | 81 | 351 | 9.57e-137 | 404 |
| MS.gene43808.t1 | AT3G22370 | 55.143 | 350 | 122 | 5 | 332 | 653 | 12 | 354 | 2.51e-136 | 403 |
| MS.gene43808.t1 | AT3G22360 | 64.000 | 275 | 99 | 0 | 52 | 326 | 48 | 322 | 3.95e-133 | 394 |
| MS.gene43808.t1 | AT3G22360 | 64.074 | 270 | 97 | 0 | 384 | 653 | 56 | 325 | 1.84e-132 | 392 |
| MS.gene43808.t1 | AT1G32350 | 60.667 | 300 | 107 | 2 | 365 | 653 | 19 | 318 | 1.04e-131 | 390 |
| MS.gene43808.t1 | AT1G32350 | 58.280 | 314 | 125 | 2 | 19 | 326 | 2 | 315 | 1.11e-129 | 385 |
| MS.gene43808.t1 | AT3G27620 | 65.134 | 261 | 91 | 0 | 393 | 653 | 69 | 329 | 1.92e-130 | 387 |
| MS.gene43808.t1 | AT3G27620 | 66.279 | 258 | 87 | 0 | 69 | 326 | 69 | 326 | 3.68e-130 | 387 |
| MS.gene43808.t1 | AT1G32350 | 57.718 | 298 | 120 | 2 | 19 | 310 | 2 | 299 | 6.03e-121 | 362 |
| MS.gene43808.t1 | AT1G32350 | 59.786 | 281 | 102 | 2 | 365 | 634 | 19 | 299 | 6.41e-120 | 359 |
Find 136 sgRNAs with CRISPR-Local
Find 302 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCTATTGCAATTGATTAT+TGG | 0.137756 | 5.1:-54792477 | MS.gene43808:CDS |
| CTGCTATTGCTATTGATTAT+TGG | 0.140551 | 5.1:-54789182 | MS.gene43808:CDS |
| CTTTCAATTCCTTTCCTTGA+TGG | 0.150163 | 5.1:+54791672 | None:intergenic |
| ACATAGGTTTGTTGGTTATT+TGG | 0.199576 | 5.1:-54789280 | MS.gene43808:CDS |
| ACATAGATTTGTTGGTTATT+TGG | 0.210434 | 5.1:-54792575 | MS.gene43808:CDS |
| TCAGATCTGTCAAGTTTCTA+AGG | 0.220365 | 5.1:-54790135 | MS.gene43808:CDS |
| ACGCCGTGGTTTCGAGTTAC+TGG | 0.248723 | 5.1:-54794001 | MS.gene43808:CDS |
| TCACTAGGCCCAAGGTTAAA+AGG | 0.260435 | 5.1:-54790631 | MS.gene43808:CDS |
| CAAGAGCGCCACCGCCATTC+TGG | 0.273793 | 5.1:+54790765 | None:intergenic |
| GTCAACTTTGCCAGAGAAAA+AGG | 0.274817 | 5.1:-54794078 | MS.gene43808:CDS |
| GTCAACTCTGCCAGAGAAAA+AGG | 0.288648 | 5.1:-54790720 | MS.gene43808:CDS |
| ACACCGTCGTTTCGAGTTAC+TGG | 0.299309 | 5.1:-54790658 | MS.gene43808:CDS |
| AAAATAGCACATAGATTTGT+TGG | 0.333247 | 5.1:-54792583 | MS.gene43808:CDS |
| CCATCCTCCTTAAGAATCTT+AGG | 0.339325 | 5.1:+54793966 | None:intergenic |
| AGCATCCCTCCCACCATTCC+AGG | 0.354203 | 5.1:+54792805 | None:intergenic |
| TAATTACTGCAGGAACGATA+TGG | 0.355715 | 5.1:-54792865 | MS.gene43808:intron |
| CAGAATGGCGGTGGCGCTCT+TGG | 0.366629 | 5.1:-54790764 | MS.gene43808:CDS |
| TCTCTCTGATATGTATTTCA+AGG | 0.368316 | 5.1:-54790110 | MS.gene43808:intron |
| AAGTTGGCATGAAAGGCTTT+TGG | 0.400981 | 5.1:-54789370 | MS.gene43808:CDS |
| GCTCTCTGATTTATACTTCA+AGG | 0.411153 | 5.1:-54793198 | MS.gene43808:intron |
| TCAGATCTGTCAAGTTTCTA+CGG | 0.416301 | 5.1:-54793223 | MS.gene43808:CDS |
| TCCTAAGGATGCAACTCTTA+AGG | 0.422607 | 5.1:-54789154 | MS.gene43808:CDS |
| CTGTTATTACTGCTATTGTT+GGG | 0.423703 | 5.1:+54794026 | None:intergenic |
| CGCCGTGGTTTCGAGTTACT+GGG | 0.425383 | 5.1:-54794000 | MS.gene43808:CDS |
| GTGCTGATGAGGCTCATCAT+AGG | 0.433399 | 5.1:-54789113 | MS.gene43808:CDS |
| GTGCTGATGAGGCTCATCAT+AGG | 0.433399 | 5.1:-54792408 | MS.gene43808:CDS |
| GCTGTTATTACTGCTATTGT+TGG | 0.434713 | 5.1:+54794025 | None:intergenic |
| AAAAGCCTCTCATGCCAACT+TGG | 0.437573 | 5.1:+54792667 | None:intergenic |
| TGTTGGTTATTTGGAGGAAG+AGG | 0.444234 | 5.1:-54789271 | MS.gene43808:CDS |
| TCTTTAAGAGTTGCATCCTT+AGG | 0.446114 | 5.1:+54792448 | None:intergenic |
| AAAACAGCACATAGGTTTGT+TGG | 0.451661 | 5.1:-54789288 | MS.gene43808:CDS |
| AAAAGCCTTTCATGCCAACT+TGG | 0.452120 | 5.1:+54789372 | None:intergenic |
| CAGTAGGCCTAAGATTCTTA+AGG | 0.458003 | 5.1:-54793973 | MS.gene43808:CDS |
| CACCGTCGTTTCGAGTTACT+GGG | 0.458130 | 5.1:-54790657 | MS.gene43808:CDS |
| CAGATCTGTCAAGTTTCTAC+GGG | 0.458497 | 5.1:-54793222 | MS.gene43808:CDS |
| GAAACAATAGCAGCTGTCCC+TGG | 0.459329 | 5.1:-54792823 | MS.gene43808:CDS |
| AAAAGCATCCCTCCGACTAT+TGG | 0.460383 | 5.1:+54789507 | None:intergenic |
| GCGCTCTTGGAAGCTTCTAC+TGG | 0.467431 | 5.1:-54790751 | MS.gene43808:CDS |
| AAGTTGGCATGAGAGGCTTT+TGG | 0.469081 | 5.1:-54792665 | MS.gene43808:CDS |
| TGAAACCAAGTTGGCATGAA+AGG | 0.472407 | 5.1:-54789377 | MS.gene43808:CDS |
| CACTAGGCCCAAGGTTAAAA+GGG | 0.475986 | 5.1:-54790630 | MS.gene43808:CDS |
| TCCTTAAGAGTTGCATCCTT+AGG | 0.476176 | 5.1:+54789153 | None:intergenic |
| CATTTAAATGCAATTGAAAG+TGG | 0.479306 | 5.1:-54789228 | MS.gene43808:CDS |
| CAGATCTGTCAAGTTTCTAA+GGG | 0.482561 | 5.1:-54790134 | MS.gene43808:CDS |
| TTGTAGGATATTCACCATCA+AGG | 0.489202 | 5.1:-54788607 | MS.gene43808:intron |
| TTGTAGGATATTCACCATCA+AGG | 0.489202 | 5.1:-54791686 | MS.gene43808:intron |
| CAATGATAACCAACAGGAGC+TGG | 0.493882 | 5.1:+54788565 | None:intergenic |
| CAATGATAACCAACAGGAGC+TGG | 0.493882 | 5.1:+54791644 | None:intergenic |
| TGATTATTGGAGACTTCCTA+AGG | 0.494224 | 5.1:-54789169 | MS.gene43808:CDS |
| CACTGTTATTCGTGCTGATG+AGG | 0.498752 | 5.1:-54789124 | MS.gene43808:CDS |
| CAATAATCAATTGCAATAGC+AGG | 0.503907 | 5.1:+54792478 | None:intergenic |
| AGCATCCCTCCGACTATTGG+CGG | 0.504033 | 5.1:+54789510 | None:intergenic |
| GTGGCCATGGAACTGCTTCA+TGG | 0.504226 | 5.1:-54793937 | MS.gene43808:intron |
| AATTTCAACACGCTGGTGGT+TGG | 0.504805 | 5.1:-54792759 | MS.gene43808:CDS |
| GTGCGTGTGGAAGCTTGTAC+TGG | 0.504974 | 5.1:-54794109 | MS.gene43808:CDS |
| ATGACTCAATGATAACCAAC+AGG | 0.508368 | 5.1:+54788559 | None:intergenic |
| CGAGCTTTGTTCCGCAGTGG+TGG | 0.509292 | 5.1:-54794197 | MS.gene43808:CDS |
| ATAAACCGCGGTGATAGCTC+TGG | 0.513422 | 5.1:+54790816 | None:intergenic |
| TTGAAGAAGCAGAGAATGAA+AGG | 0.517469 | 5.1:-54792723 | MS.gene43808:CDS |
| CCTAAGATTCTTAAGGAGGA+TGG | 0.518028 | 5.1:-54793966 | MS.gene43808:CDS |
| AGGATGGAACTGAGTGGCCA+TGG | 0.518415 | 5.1:-54790607 | MS.gene43808:CDS |
| AGGATGGAACTGAGTGGCCA+TGG | 0.518415 | 5.1:-54793950 | MS.gene43808:CDS |
| TAGATTTGTTGGTTATTTGG+AGG | 0.518817 | 5.1:-54792572 | MS.gene43808:CDS |
| TGCTGATGAGGCTCATCATA+GGG | 0.523825 | 5.1:-54789112 | MS.gene43808:CDS |
| TGCTGATGAGGCTCATCATA+GGG | 0.523825 | 5.1:-54792407 | MS.gene43808:CDS |
| TGAAACCAAGTTGGCATGAG+AGG | 0.527939 | 5.1:-54792672 | MS.gene43808:CDS |
| TGATTATTGGAGACTTCCTA+AGG | 0.530834 | 5.1:-54792464 | MS.gene43808:CDS |
| CGGATGTCATGCAATGATGC+TGG | 0.534003 | 5.1:-54789550 | MS.gene43808:CDS |
| TAGGTTTGTTGGTTATTTGG+AGG | 0.534495 | 5.1:-54789277 | MS.gene43808:CDS |
| AGCAGCTGTCCCTGGAATGG+TGG | 0.537892 | 5.1:-54792815 | MS.gene43808:CDS |
| GTGGCCATGGAACTGTTTCA+TGG | 0.541418 | 5.1:-54790594 | MS.gene43808:intron |
| CAGCATGGCGGTGGTGCGTG+TGG | 0.542247 | 5.1:-54794122 | MS.gene43808:CDS |
| CTGTCCCTGGAATGGTGGGA+GGG | 0.543809 | 5.1:-54792810 | MS.gene43808:CDS |
| AATTTCAACACACTGGTGGT+TGG | 0.547562 | 5.1:-54789464 | MS.gene43808:CDS |
| CCGCCATGCTGATGTTGTCT+CGG | 0.548514 | 5.1:+54794134 | None:intergenic |
| CACTGTTATCCGTGCTGATG+AGG | 0.548694 | 5.1:-54792419 | MS.gene43808:CDS |
| CCACCGCCATTCTGGTGTCT+CGG | 0.549588 | 5.1:+54790773 | None:intergenic |
| AGACAACATCAGCATGGCGG+TGG | 0.550470 | 5.1:-54794131 | MS.gene43808:CDS |
| CAATAATCAATAGCAATAGC+AGG | 0.550641 | 5.1:+54789183 | None:intergenic |
| CCCAAGGTTAAAAGGGAGGA+TGG | 0.553186 | 5.1:-54790623 | MS.gene43808:CDS |
| TCAATAGCAATAGCAGGAGC+AGG | 0.557374 | 5.1:+54789189 | None:intergenic |
| TCAATTGCAATAGCAGGAGC+AGG | 0.557374 | 5.1:+54792484 | None:intergenic |
| AAAGAGGCTCCAGCTCCTGT+TGG | 0.560458 | 5.1:-54791653 | MS.gene43808:intron |
| AGAAAATTTCAACACGCTGG+TGG | 0.561109 | 5.1:-54792763 | MS.gene43808:CDS |
| TTGAAGAAGCAGAGAATGAG+AGG | 0.562560 | 5.1:-54789428 | MS.gene43808:CDS |
| TCAAGGAAAAGAACTGAAAG+AGG | 0.563153 | 5.1:-54788590 | MS.gene43808:CDS |
| CCGAGACACCAGAATGGCGG+TGG | 0.566922 | 5.1:-54790773 | MS.gene43808:CDS |
| CTTACCATGAAGCAGTTCCA+TGG | 0.568629 | 5.1:+54793933 | None:intergenic |
| AATAGCAGCTGTCCCTGGAA+TGG | 0.571632 | 5.1:-54792818 | MS.gene43808:CDS |
| GCATCCCTCCGACTATTGGC+GGG | 0.580470 | 5.1:+54789511 | None:intergenic |
| TTGTTTCTAGCATCATTGCA+TGG | 0.582988 | 5.1:+54792839 | None:intergenic |
| TCAAGGAAAGGAATTGAAAG+AGG | 0.585266 | 5.1:-54791669 | MS.gene43808:CDS |
| AAAGAGGCTCCAGCTCCTGT+TGG | 0.585296 | 5.1:-54788574 | MS.gene43808:CDS |
| GCTGTCCCTGGAATGGTGGG+AGG | 0.588333 | 5.1:-54792811 | MS.gene43808:CDS |
| GCAGCCGTCCCGCCAATAGT+CGG | 0.589897 | 5.1:-54789519 | MS.gene43808:CDS |
| GCAGCTGTCCCTGGAATGGT+GGG | 0.590768 | 5.1:-54792814 | MS.gene43808:CDS |
| AGAAAATTTCAACACACTGG+TGG | 0.593623 | 5.1:-54789468 | MS.gene43808:CDS |
| TCTGAGTTGTAACTTTCCCA+TGG | 0.595804 | 5.1:+54790217 | None:intergenic |
| GCCGTCCCGCCAATAGTCGG+AGG | 0.600590 | 5.1:-54789516 | MS.gene43808:CDS |
| CCCTCCGACTATTGGCGGGA+CGG | 0.602858 | 5.1:+54789515 | None:intergenic |
| GGATATTCACCATCAAGGAA+AGG | 0.604645 | 5.1:-54791681 | MS.gene43808:CDS |
| CTTACCATGAAACAGTTCCA+TGG | 0.606074 | 5.1:+54790590 | None:intergenic |
| CATTTACATGCAATTGAGAG+TGG | 0.609097 | 5.1:-54792523 | MS.gene43808:CDS |
| GAGCTTTGTTCCGCAGTGGT+GGG | 0.613944 | 5.1:-54794196 | MS.gene43808:CDS |
| GTGGAAGCTTGTACTGGCAG+AGG | 0.617429 | 5.1:-54794103 | MS.gene43808:CDS |
| CTAAGAAAATTTCAACACGC+TGG | 0.618947 | 5.1:-54792766 | MS.gene43808:CDS |
| GCATCCCTCCCACCATTCCA+GGG | 0.622243 | 5.1:+54792806 | None:intergenic |
| AAACTTGTTACTAAGGTCAA+CGG | 0.622396 | 5.1:-54790861 | MS.gene43808:CDS |
| TAGAGCTTGTGAAACCAAGT+TGG | 0.623322 | 5.1:-54789386 | MS.gene43808:CDS |
| CTAAGAAAATTTCAACACAC+TGG | 0.624723 | 5.1:-54789471 | MS.gene43808:CDS |
| GCCGTGGTTTCGAGTTACTG+GGG | 0.627292 | 5.1:-54793999 | MS.gene43808:CDS |
| CCGTGGTTTCGAGTTACTGG+GGG | 0.630421 | 5.1:-54793998 | MS.gene43808:CDS |
| TATGATGAGCCTCATCAGCA+CGG | 0.637725 | 5.1:+54792410 | None:intergenic |
| CCGTCCCGCCAATAGTCGGA+GGG | 0.638014 | 5.1:-54789515 | MS.gene43808:CDS |
| TAGGCCTAAGATTCTTAAGG+AGG | 0.638954 | 5.1:-54793970 | MS.gene43808:CDS |
| TCTGAACTGTAACTTTCCCA+TGG | 0.639567 | 5.1:+54793305 | None:intergenic |
| GGATGTCAATCACTTTGCGT+CGG | 0.643344 | 5.1:-54789091 | MS.gene43808:intron |
| GTTCAGCCGAGACACCAGAA+TGG | 0.652102 | 5.1:-54790779 | MS.gene43808:CDS |
| TTGAGCTTGTGAAACCAAGT+TGG | 0.652337 | 5.1:-54792681 | MS.gene43808:CDS |
| CCGTCGTTTCGAGTTACTGG+GGG | 0.659766 | 5.1:-54790655 | MS.gene43808:CDS |
| CAGCCGAGACACCAGAATGG+CGG | 0.659819 | 5.1:-54790776 | MS.gene43808:CDS |
| CAGTAATAACAGCAACGCCG+TGG | 0.669597 | 5.1:-54794015 | MS.gene43808:CDS |
| AAGGATGCATTTGATGACAA+TGG | 0.671655 | 5.1:-54792704 | MS.gene43808:CDS |
| TAACTGTTCCAGGAACGGTA+CGG | 0.672640 | 5.1:-54789570 | MS.gene43808:intron |
| ACCGTCGTTTCGAGTTACTG+GGG | 0.673804 | 5.1:-54790656 | MS.gene43808:CDS |
| TAGGCCCAAGGTTAAAAGGG+AGG | 0.675638 | 5.1:-54790627 | MS.gene43808:CDS |
| CAGCCGAGACAACATCAGCA+TGG | 0.676336 | 5.1:-54794137 | MS.gene43808:CDS |
| ACACGAGCTTTGTTCCGCAG+TGG | 0.677389 | 5.1:-54794200 | MS.gene43808:CDS |
| GAGGATGCATTTGATGACAA+TGG | 0.683614 | 5.1:-54789409 | MS.gene43808:CDS |
| CCGAGACAACATCAGCATGG+CGG | 0.731392 | 5.1:-54794134 | MS.gene43808:CDS |
| TCACCGCGGTTTATCAACTG+CGG | 0.737624 | 5.1:-54790807 | MS.gene43808:CDS |
| AAAGGGAGGATGGAACTGAG+TGG | 0.744791 | 5.1:-54790613 | MS.gene43808:CDS |
| TTAAGGAGGATGGAACTGAG+TGG | 0.746044 | 5.1:-54793956 | MS.gene43808:CDS |
| GGTGGTAGTTCCCACCACTG+CGG | 0.755021 | 5.1:+54794186 | None:intergenic |
| TCACCGCAGTTGATAAACCG+CGG | 0.755774 | 5.1:+54790804 | None:intergenic |
| AGTAGCCAGAGCTATCACCG+CGG | 0.858501 | 5.1:-54790821 | MS.gene43808:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATCATATATAAAATAACA+AGG | + | chr5.1:54791847-54791866 | None:intergenic | 10.0% |
| !! | TTTAAAAAATGAATCTAATA+TGG | - | chr5.1:54791540-54791559 | MS.gene43808:intron | 10.0% |
| !!! | AATGTTAAGATTTATATTTT+AGG | - | chr5.1:54790573-54790592 | MS.gene43808:intron | 10.0% |
| !!! | TGTTTAATATAAGTTTTTTT+TGG | + | chr5.1:54793920-54793939 | None:intergenic | 10.0% |
| !!! | TTTTAAAGAATCTTATAATT+AGG | - | chr5.1:54791592-54791611 | MS.gene43808:intron | 10.0% |
| !! | AAAACAAAAGTCTATTTATA+AGG | - | chr5.1:54794033-54794052 | MS.gene43808:CDS | 15.0% |
| !! | ACACAATTATAATGAAAATT+TGG | + | chr5.1:54790437-54790456 | None:intergenic | 15.0% |
| !! | ACTAAGATGATATATTTATA+GGG | + | chr5.1:54793783-54793802 | None:intergenic | 15.0% |
| !! | ATAAAAAACTTTATTCTTAG+TGG | - | chr5.1:54792925-54792944 | MS.gene43808:intron | 15.0% |
| !! | ATGAAACATAAAAATTACTT+AGG | - | chr5.1:54789674-54789693 | MS.gene43808:intron | 15.0% |
| !! | ATTTAACGAATAATTAAACA+TGG | - | chr5.1:54791708-54791727 | MS.gene43808:intron | 15.0% |
| !! | TAAGAATATATACTATATAG+AGG | - | chr5.1:54792220-54792239 | MS.gene43808:intron | 15.0% |
| !! | TAGTAAAATCAATATTAGTT+TGG | - | chr5.1:54791395-54791414 | MS.gene43808:intron | 15.0% |
| !! | TGAAACATAAAAATTACTTA+GGG | - | chr5.1:54789675-54789694 | MS.gene43808:intron | 15.0% |
| !! | TTCAAATTCTATATTTATAG+AGG | + | chr5.1:54790479-54790498 | None:intergenic | 15.0% |
| !! | TTCATTATAATTGTGTTAAA+AGG | - | chr5.1:54790441-54790460 | MS.gene43808:intron | 15.0% |
| !!! | ATAATTTTCATATAGAGTAA+TGG | + | chr5.1:54792746-54792765 | None:intergenic | 15.0% |
| !!! | ATTTTTGAAGAATTTTTTGT+GGG | + | chr5.1:54790741-54790760 | None:intergenic | 15.0% |
| !!! | ATTTTTTAAATGTATCTCAT+AGG | + | chr5.1:54791530-54791549 | None:intergenic | 15.0% |
| !!! | CTCAAATCAAATTTTTTTAA+TGG | + | chr5.1:54789308-54789327 | None:intergenic | 15.0% |
| !!! | TAACACATTAAATTGTTTTT+TGG | + | chr5.1:54789786-54789805 | None:intergenic | 15.0% |
| !!! | TATTTTTGAAGAATTTTTTG+TGG | + | chr5.1:54790742-54790761 | None:intergenic | 15.0% |
| !!! | TCAATTTAAAGTTAATTCTA+GGG | - | chr5.1:54789380-54789399 | MS.gene43808:CDS | 15.0% |
| !!! | TTTTATTTATTGAACAATTC+AGG | + | chr5.1:54791261-54791280 | None:intergenic | 15.0% |
| !!! | TTTTCTCAACAAAAAAAAAA+TGG | - | chr5.1:54794066-54794085 | MS.gene43808:CDS | 15.0% |
| !! | AAAGAATTTATGAAAAAAGC+CGG | + | chr5.1:54789069-54789088 | None:intergenic | 20.0% |
| !! | AAGAATACATATATAGAAAG+AGG | - | chr5.1:54788878-54788897 | MS.gene43808:intron | 20.0% |
| !! | AAGAATCTTATAATTAGGAA+TGG | - | chr5.1:54791597-54791616 | MS.gene43808:intron | 20.0% |
| !! | AATGTCACATAAAAATTACT+TGG | - | chr5.1:54792767-54792786 | MS.gene43808:CDS | 20.0% |
| !! | AGAATCTTATAATTAGGAAT+GGG | - | chr5.1:54791598-54791617 | MS.gene43808:intron | 20.0% |
| !! | AGTGTCTAAAAAACTATAAT+GGG | + | chr5.1:54791032-54791051 | None:intergenic | 20.0% |
| !! | ATTTGAATTATAATTACTGC+AGG | - | chr5.1:54789916-54789935 | MS.gene43808:intron | 20.0% |
| !! | GAATTTGAATTAATTGTGAT+AGG | - | chr5.1:54790490-54790509 | MS.gene43808:intron | 20.0% |
| !! | GACTAAGATGATATATTTAT+AGG | + | chr5.1:54793784-54793803 | None:intergenic | 20.0% |
| !! | TAAGTCTATCTACAAAATTT+AGG | + | chr5.1:54792362-54792381 | None:intergenic | 20.0% |
| !! | TATTGTCCTTTGTTAAAAAT+TGG | - | chr5.1:54792881-54792900 | MS.gene43808:intron | 20.0% |
| !!! | AAAAAATTTGATTTGAGAGT+TGG | - | chr5.1:54789311-54789330 | MS.gene43808:CDS | 20.0% |
| !!! | ATAGAAGAATTTTGATTGAT+GGG | - | chr5.1:54793180-54793199 | MS.gene43808:intron | 20.0% |
| !!! | CTCAATTTAAAGTTAATTCT+AGG | - | chr5.1:54789379-54789398 | MS.gene43808:CDS | 20.0% |
| !!! | TATCAGAAATGTCTTAATTT+TGG | - | chr5.1:54791445-54791464 | MS.gene43808:intron | 20.0% |
| !!! | TTCAAACTTTGTTTCTTTAA+GGG | + | chr5.1:54790978-54790997 | None:intergenic | 20.0% |
| !!! | TTTCAAACTTTGTTTCTTTA+AGG | + | chr5.1:54790979-54790998 | None:intergenic | 20.0% |
| ! | AAAATAGCACATAGATTTGT+TGG | - | chr5.1:54790208-54790227 | MS.gene43808:CDS | 25.0% |
| ! | ATATGTATTTCAAGGTTTGT+GGG | - | chr5.1:54792689-54792708 | MS.gene43808:CDS | 25.0% |
| ! | ATCATGTACCAAAAACATTT+GGG | - | chr5.1:54789532-54789551 | MS.gene43808:CDS | 25.0% |
| ! | ATTTATACTTCAAGGTATGT+GGG | - | chr5.1:54789601-54789620 | MS.gene43808:intron | 25.0% |
| ! | CATTTAAATGCAATTGAAAG+TGG | - | chr5.1:54793563-54793582 | MS.gene43808:intron | 25.0% |
| ! | GAATATATACTATATAGAGG+AGG | - | chr5.1:54792223-54792242 | MS.gene43808:intron | 25.0% |
| ! | GAGTGTCTAAAAAACTATAA+TGG | + | chr5.1:54791033-54791052 | None:intergenic | 25.0% |
| ! | GTTAAATCTTCAACGAAATT+TGG | - | chr5.1:54790606-54790625 | MS.gene43808:CDS | 25.0% |
| ! | TACAACACATTGAATTACTA+GGG | + | chr5.1:54793136-54793155 | None:intergenic | 25.0% |
| ! | TATCACATGAAAGTAATCAA+TGG | + | chr5.1:54789200-54789219 | None:intergenic | 25.0% |
| ! | TATGGATCGTCTTATATTTA+AGG | - | chr5.1:54791558-54791577 | MS.gene43808:intron | 25.0% |
| ! | TGTGTTATAGTAAATCAGAT+TGG | - | chr5.1:54789799-54789818 | MS.gene43808:intron | 25.0% |
| !! | AAACTTTTGAACAATATCAC+CGG | - | chr5.1:54789047-54789066 | MS.gene43808:intron | 25.0% |
| !! | AATCAATATTAGTTTGGCTT+TGG | - | chr5.1:54791401-54791420 | MS.gene43808:intron | 25.0% |
| !! | TAGTAGCCAATTTTTAACAA+AGG | + | chr5.1:54792890-54792909 | None:intergenic | 25.0% |
| !!! | ACAAATCTATGTGCTATTTT+TGG | + | chr5.1:54790208-54790227 | None:intergenic | 25.0% |
| !!! | ACATAGATTTGTTGGTTATT+TGG | - | chr5.1:54790216-54790235 | MS.gene43808:CDS | 25.0% |
| !!! | ACATGAAAAACTTGTTACTA+AGG | - | chr5.1:54791923-54791942 | MS.gene43808:intron | 25.0% |
| !!! | CATAGAAGAATTTTGATTGA+TGG | - | chr5.1:54793179-54793198 | MS.gene43808:intron | 25.0% |
| !!! | GGAATCAATATTTTTGTTGT+TGG | + | chr5.1:54793115-54793134 | None:intergenic | 25.0% |
| !!! | TAGAAGAATTTTGATTGATG+GGG | - | chr5.1:54793181-54793200 | MS.gene43808:intron | 25.0% |
| AAATATAACTGTTCCAGGAA+CGG | - | chr5.1:54793216-54793235 | MS.gene43808:CDS | 30.0% | |
| AAATTCTGTATTTGCCACAA+AGG | + | chr5.1:54791782-54791801 | None:intergenic | 30.0% | |
| AATCATTTCATTTGTGATGG+TGG | - | chr5.1:54790531-54790550 | MS.gene43808:intron | 30.0% | |
| AATTCTGTATTTGCCACAAA+GGG | + | chr5.1:54791781-54791800 | None:intergenic | 30.0% | |
| AGAAAATTCCAAAAAGCTAG+TGG | - | chr5.1:54791631-54791650 | MS.gene43808:intron | 30.0% | |
| ATACTCTCTATTCACACAAT+TGG | + | chr5.1:54790666-54790685 | None:intergenic | 30.0% | |
| ATGAAATGATTGTGTGAATG+TGG | + | chr5.1:54790522-54790541 | None:intergenic | 30.0% | |
| CAATAATCAATAGCAATAGC+AGG | + | chr5.1:54793611-54793630 | None:intergenic | 30.0% | |
| CAATAATCAATTGCAATAGC+AGG | + | chr5.1:54790316-54790335 | None:intergenic | 30.0% | |
| CACAATCATTTCATTTGTGA+TGG | - | chr5.1:54790528-54790547 | MS.gene43808:intron | 30.0% | |
| CATCATGTACCAAAAACATT+TGG | - | chr5.1:54789531-54789550 | MS.gene43808:CDS | 30.0% | |
| CTAAGAAAATTTCAACACAC+TGG | - | chr5.1:54793320-54793339 | MS.gene43808:intron | 30.0% | |
| CTACAACACATTGAATTACT+AGG | + | chr5.1:54793137-54793156 | None:intergenic | 30.0% | |
| CTGCTATTGCAATTGATTAT+TGG | - | chr5.1:54790314-54790333 | MS.gene43808:intron | 30.0% | |
| CTGTTATTACTGCTATTGTT+GGG | + | chr5.1:54788768-54788787 | None:intergenic | 30.0% | |
| GACACTATAGTTAAAATGCA+AGG | - | chr5.1:54793943-54793962 | MS.gene43808:CDS | 30.0% | |
| GATATGTATTTCAAGGTTTG+TGG | - | chr5.1:54792688-54792707 | MS.gene43808:CDS | 30.0% | |
| GATTTATACTTCAAGGTATG+TGG | - | chr5.1:54789600-54789619 | MS.gene43808:intron | 30.0% | |
| GTATTTGGATGATTTCTCAT+AGG | - | chr5.1:54789431-54789450 | MS.gene43808:CDS | 30.0% | |
| GTTAATCATACTTGAAGTCT+CGG | - | chr5.1:54793848-54793867 | MS.gene43808:intron | 30.0% | |
| TATAATTAGGAATGGGATCA+AGG | - | chr5.1:54791605-54791624 | MS.gene43808:intron | 30.0% | |
| TCATGTACCAAAAACATTTG+CGG | - | chr5.1:54789533-54789552 | MS.gene43808:CDS | 30.0% | |
| TCATGTACCAAAAACATTTG+GGG | - | chr5.1:54789533-54789552 | MS.gene43808:CDS | 30.0% | |
| TCTCTCTGATATGTATTTCA+AGG | - | chr5.1:54792681-54792700 | MS.gene43808:CDS | 30.0% | |
| TGAAAGTTTAGAGACAACAA+AGG | + | chr5.1:54791231-54791250 | None:intergenic | 30.0% | |
| TGTTCTCTATATATGATGTC+CGG | - | chr5.1:54792546-54792565 | MS.gene43808:CDS | 30.0% | |
| ! | ATCTGAAATATAACTGTTCC+AGG | - | chr5.1:54793211-54793230 | MS.gene43808:CDS | 30.0% |
| ! | CATGTGGATTTTCATTAGAT+AGG | - | chr5.1:54790846-54790865 | MS.gene43808:CDS | 30.0% |
| ! | CTGCTATTGCTATTGATTAT+TGG | - | chr5.1:54793609-54793628 | MS.gene43808:intron | 30.0% |
| ! | TGTTGTGTTCATCTTTTTGT+AGG | - | chr5.1:54794168-54794187 | MS.gene43808:CDS | 30.0% |
| !! | AAACTTGTTACTAAGGTCAA+CGG | - | chr5.1:54791930-54791949 | MS.gene43808:intron | 30.0% |
| !! | ACATAGGTTTGTTGGTTATT+TGG | - | chr5.1:54793511-54793530 | MS.gene43808:intron | 30.0% |
| !! | GACTTTTTCCGTGAAAAAAT+CGG | - | chr5.1:54789750-54789769 | MS.gene43808:intron | 30.0% |
| !! | TAGATTTGTTGGTTATTTGG+AGG | - | chr5.1:54790219-54790238 | MS.gene43808:CDS | 30.0% |
| !! | TGTTGTGTTGTTCTTTTTGT+AGG | - | chr5.1:54791089-54791108 | MS.gene43808:intron | 30.0% |
| !!! | TTGACAATCCGATTTTTTCA+CGG | + | chr5.1:54789761-54789780 | None:intergenic | 30.0% |
| AAAACAGCACATAGGTTTGT+TGG | - | chr5.1:54793503-54793522 | MS.gene43808:intron | 35.0% | |
| AAAGAGACACTAACTCTGTT+TGG | - | chr5.1:54789141-54789160 | MS.gene43808:CDS | 35.0% | |
| AACATTCAGAACAAACGAAG+AGG | + | chr5.1:54791073-54791092 | None:intergenic | 35.0% | |
| AACATTCAGAGCAAATGAAG+AGG | + | chr5.1:54794152-54794171 | None:intergenic | 35.0% | |
| ACCGTAAAAAAGTTTCGTAG+AGG | + | chr5.1:54789864-54789883 | None:intergenic | 35.0% | |
| AGAAAATTTCAACACACTGG+TGG | - | chr5.1:54793323-54793342 | MS.gene43808:intron | 35.0% | |
| ATCTCAAAGTTTACGTCAGT+AGG | - | chr5.1:54789097-54789116 | MS.gene43808:CDS | 35.0% | |
| ATGACTCAATGATAACCAAC+AGG | + | chr5.1:54791156-54791175 | None:intergenic | 35.0% | |
| ATGAGTTACTTGATCTTGCA+TGG | - | chr5.1:54789404-54789423 | MS.gene43808:CDS | 35.0% | |
| CACCAAACAATTCCTTGATT+GGG | + | chr5.1:54791324-54791343 | None:intergenic | 35.0% | |
| CAGATCTGTCAAGTTTCTAA+GGG | - | chr5.1:54792657-54792676 | MS.gene43808:CDS | 35.0% | |
| CATTTACATGCAATTGAGAG+TGG | - | chr5.1:54790268-54790287 | MS.gene43808:intron | 35.0% | |
| CTAAGAAAATTTCAACACGC+TGG | - | chr5.1:54790025-54790044 | MS.gene43808:intron | 35.0% | |
| CTTTCAATTCCTTTCCTTGA+TGG | + | chr5.1:54791122-54791141 | None:intergenic | 35.0% | |
| GCTCTCTGATTTATACTTCA+AGG | - | chr5.1:54789593-54789612 | MS.gene43808:intron | 35.0% | |
| GCTGTTATTACTGCTATTGT+TGG | + | chr5.1:54788769-54788788 | None:intergenic | 35.0% | |
| GTGATGATCATCTATCTACA+GGG | - | chr5.1:54791350-54791369 | MS.gene43808:intron | 35.0% | |
| TAATTACTGCAGGAACGATA+TGG | - | chr5.1:54789926-54789945 | MS.gene43808:intron | 35.0% | |
| TATGGTCGTTTAATCGAGAT+AGG | + | chr5.1:54790637-54790656 | None:intergenic | 35.0% | |
| TCAAGGAAAAGAACTGAAAG+AGG | - | chr5.1:54794201-54794220 | MS.gene43808:CDS | 35.0% | |
| TCAAGGAAAGGAATTGAAAG+AGG | - | chr5.1:54791122-54791141 | MS.gene43808:intron | 35.0% | |
| TCAGATCTGTCAAGTTTCTA+AGG | - | chr5.1:54789568-54789587 | MS.gene43808:intron | 35.0% | |
| TCAGATCTGTCAAGTTTCTA+CGG | - | chr5.1:54789568-54789587 | MS.gene43808:intron | 35.0% | |
| TGAAAATAGTAGCTCAAGAG+TGG | + | chr5.1:54791877-54791896 | None:intergenic | 35.0% | |
| TGATTATTGGAGACTTCCTA+AGG | - | chr5.1:54790327-54790346 | MS.gene43808:intron | 35.0% | |
| TTGAAGAAGCAGAGAATGAA+AGG | - | chr5.1:54790068-54790087 | MS.gene43808:intron | 35.0% | |
| TTGTAGGATATTCACCATCA+AGG | - | chr5.1:54791105-54791124 | MS.gene43808:intron | 35.0% | |
| TTTCACCAAAAACAGCACAT+AGG | - | chr5.1:54793495-54793514 | MS.gene43808:intron | 35.0% | |
| ! | AACTTGTCCCCAAATGTTTT+TGG | + | chr5.1:54789543-54789562 | None:intergenic | 35.0% |
| ! | AACTTGTCCGCAAATGTTTT+TGG | + | chr5.1:54792631-54792650 | None:intergenic | 35.0% |
| ! | AAGGATGCATTTGATGACAA+TGG | - | chr5.1:54790087-54790106 | MS.gene43808:intron | 35.0% |
| ! | CTTAACACTTTAGTTCCTAG+TGG | + | chr5.1:54793091-54793110 | None:intergenic | 35.0% |
| ! | CTTTCAGTTCTTTTCCTTGA+TGG | + | chr5.1:54794201-54794220 | None:intergenic | 35.0% |
| ! | GTACTTACTTGCTACAAAGT+TGG | + | chr5.1:54791675-54791694 | None:intergenic | 35.0% |
| ! | TCTTTAAGAGTTGCATCCTT+AGG | + | chr5.1:54790346-54790365 | None:intergenic | 35.0% |
| ! | TTTTCTCTGACTCAACTGTT+GGG | + | chr5.1:54792832-54792851 | None:intergenic | 35.0% |
| !! | ATCTTGCATGGTGTTGTATT+TGG | - | chr5.1:54789416-54789435 | MS.gene43808:CDS | 35.0% |
| !! | CTTTTGGTTATTACTGCACA+AGG | - | chr5.1:54790142-54790161 | MS.gene43808:CDS | 35.0% |
| !! | GTGGTAACTTATTGATTCAC+CGG | - | chr5.1:54792944-54792963 | MS.gene43808:intron | 35.0% |
| !! | TAGGTTTGTTGGTTATTTGG+AGG | - | chr5.1:54793514-54793533 | MS.gene43808:intron | 35.0% |
| !! | TTGTTTCTAGCATCATTGCA+TGG | + | chr5.1:54789955-54789974 | None:intergenic | 35.0% |
| !!! | ACAAACCTATGTGCTGTTTT+TGG | + | chr5.1:54793503-54793522 | None:intergenic | 35.0% |
| !!! | GCCTCTACGAAACTTTTTTA+CGG | - | chr5.1:54789860-54789879 | MS.gene43808:intron | 35.0% |
| !!! | TATGTGCTATTTTTGGTGAG+AGG | + | chr5.1:54790201-54790220 | None:intergenic | 35.0% |
| !!! | TATGTGCTGTTTTTGGTGAA+AGG | + | chr5.1:54793496-54793515 | None:intergenic | 35.0% |
| !!! | TGTTTTTGGTACATGATGCT+TGG | + | chr5.1:54789529-54789548 | None:intergenic | 35.0% |
| AAAAATCCGTTGTCCGACTT+TGG | - | chr5.1:54789714-54789733 | MS.gene43808:intron | 40.0% | |
| AAAAGCCTTTCATGCCAACT+TGG | + | chr5.1:54793422-54793441 | None:intergenic | 40.0% | |
| AAAGGGAAGAAGAAAGGTAG+TGG | + | chr5.1:54791764-54791783 | None:intergenic | 40.0% | |
| AATTTCAACACACTGGTGGT+TGG | - | chr5.1:54793327-54793346 | MS.gene43808:intron | 40.0% | |
| AGAAAATTTCAACACGCTGG+TGG | - | chr5.1:54790028-54790047 | MS.gene43808:intron | 40.0% | |
| CACCCAATCAAGGAATTGTT+TGG | - | chr5.1:54791319-54791338 | MS.gene43808:intron | 40.0% | |
| CAGATCTGTCAAGTTTCTAC+GGG | - | chr5.1:54789569-54789588 | MS.gene43808:intron | 40.0% | |
| CAGTAGGCCTAAGATTCTTA+AGG | - | chr5.1:54788818-54788837 | MS.gene43808:intron | 40.0% | |
| CCAATCAAGGAATTGTTTGG+TGG | - | chr5.1:54791322-54791341 | MS.gene43808:intron | 40.0% | |
| CCACCAAACAATTCCTTGAT+TGG | + | chr5.1:54791325-54791344 | None:intergenic | 40.0% | |
| CCATCCTCCTTAAGAATCTT+AGG | + | chr5.1:54788828-54788847 | None:intergenic | 40.0% | |
| CCTAAGATTCTTAAGGAGGA+TGG | - | chr5.1:54788825-54788844 | MS.gene43808:intron | 40.0% | |
| CTTACCATGAAACAGTTCCA+TGG | + | chr5.1:54792204-54792223 | None:intergenic | 40.0% | |
| GACAATACCAACAACACATG+TGG | + | chr5.1:54792868-54792887 | None:intergenic | 40.0% | |
| GGATATTCACCATCAAGGAA+AGG | - | chr5.1:54791110-54791129 | MS.gene43808:intron | 40.0% | |
| GGTGATGATCATCTATCTAC+AGG | - | chr5.1:54791349-54791368 | MS.gene43808:intron | 40.0% | |
| GTCAACTTTGCCAGAGAAAA+AGG | - | chr5.1:54788713-54788732 | MS.gene43808:intron | 40.0% | |
| TACCTTTCTTCTTCCCTTTG+TGG | - | chr5.1:54791765-54791784 | MS.gene43808:intron | 40.0% | |
| TAGAGCTTGTGAAACCAAGT+TGG | - | chr5.1:54793405-54793424 | MS.gene43808:intron | 40.0% | |
| TAGGCCTAAGATTCTTAAGG+AGG | - | chr5.1:54788821-54788840 | MS.gene43808:intron | 40.0% | |
| TCACACAATTGGCGCATATA+TGG | + | chr5.1:54790655-54790674 | None:intergenic | 40.0% | |
| TCACATGAGAAGAAGAGACT+TGG | - | chr5.1:54789823-54789842 | MS.gene43808:intron | 40.0% | |
| TCCTAAGGATGCAACTCTTA+AGG | - | chr5.1:54790342-54790361 | MS.gene43808:intron | 40.0% | |
| TCCTTAAGAGTTGCATCCTT+AGG | + | chr5.1:54793641-54793660 | None:intergenic | 40.0% | |
| TCTGAACTGTAACTTTCCCA+TGG | + | chr5.1:54789489-54789508 | None:intergenic | 40.0% | |
| TCTGAGTTGTAACTTTCCCA+TGG | + | chr5.1:54792577-54792596 | None:intergenic | 40.0% | |
| TTGAAGAAGCAGAGAATGAG+AGG | - | chr5.1:54793363-54793382 | MS.gene43808:intron | 40.0% | |
| TTGAGCTTGTGAAACCAAGT+TGG | - | chr5.1:54790110-54790129 | MS.gene43808:intron | 40.0% | |
| TTGTTAATCAGCCTCGGTTA+AGG | - | chr5.1:54792967-54792986 | MS.gene43808:intron | 40.0% | |
| ! | AAGGAATTGTTTGGTGGTCT+TGG | - | chr5.1:54791328-54791347 | MS.gene43808:intron | 40.0% |
| ! | AAGTTGGCATGAAAGGCTTT+TGG | - | chr5.1:54793421-54793440 | MS.gene43808:intron | 40.0% |
| ! | ATGATCTTTGTTTGCAGCCA+TGG | - | chr5.1:54789469-54789488 | MS.gene43808:CDS | 40.0% |
| ! | CACTTTAGTTCCTAGTGGAT+AGG | + | chr5.1:54793086-54793105 | None:intergenic | 40.0% |
| ! | GAGGATGCATTTGATGACAA+TGG | - | chr5.1:54793382-54793401 | MS.gene43808:intron | 40.0% |
| ! | GCACAAGGAGTTTTCTTCAA+TGG | - | chr5.1:54790157-54790176 | MS.gene43808:CDS | 40.0% |
| ! | GTCATGTGACACTTTTCATG+TGG | - | chr5.1:54790830-54790849 | MS.gene43808:CDS | 40.0% |
| ! | GTTTTCTCTGACTCAACTGT+TGG | + | chr5.1:54792833-54792852 | None:intergenic | 40.0% |
| ! | TGAAACCAAGTTGGCATGAA+AGG | - | chr5.1:54793414-54793433 | MS.gene43808:intron | 40.0% |
| ! | TGATCTTTGTTTGCAGCCAT+GGG | - | chr5.1:54789470-54789489 | MS.gene43808:CDS | 40.0% |
| ! | TGTTCTAGTCAGCATCGAAA+AGG | + | chr5.1:54793012-54793031 | None:intergenic | 40.0% |
| ! | TGTTGGTTATTTGGAGGAAG+AGG | - | chr5.1:54790225-54790244 | MS.gene43808:intron | 40.0% |
| !! | TAGAGAGTATTGTCAGTTGC+AGG | - | chr5.1:54790676-54790695 | MS.gene43808:CDS | 40.0% |
| !!! | AAGTCGGACAACGGATTTTT+TGG | + | chr5.1:54789714-54789733 | None:intergenic | 40.0% |
| AAAAGCCTCTCATGCCAACT+TGG | + | chr5.1:54790127-54790146 | None:intergenic | 45.0% | |
| AACCGAGGCTGATTAACAAC+CGG | + | chr5.1:54792966-54792985 | None:intergenic | 45.0% | |
| AATTTCAACACGCTGGTGGT+TGG | - | chr5.1:54790032-54790051 | MS.gene43808:intron | 45.0% | |
| AGTGGAAGGTCTCATCAATG+TGG | + | chr5.1:54791746-54791765 | None:intergenic | 45.0% | |
| AGTTTCGTAGAGGCTGAACT+TGG | + | chr5.1:54789854-54789873 | None:intergenic | 45.0% | |
| CAACTATTCGACCTTAACCG+AGG | + | chr5.1:54792981-54793000 | None:intergenic | 45.0% | |
| CAATGATAACCAACAGGAGC+TGG | + | chr5.1:54791150-54791169 | None:intergenic | 45.0% | |
| CACTAGGCCCAAGGTTAAAA+GGG | - | chr5.1:54792161-54792180 | MS.gene43808:intron | 45.0% | |
| CGGTTAAGGTCGAATAGTTG+AGG | - | chr5.1:54792981-54793000 | MS.gene43808:intron | 45.0% | |
| CTGACCTGGTAATCCAAAGT+CGG | + | chr5.1:54789730-54789749 | None:intergenic | 45.0% | |
| CTTACCATGAAGCAGTTCCA+TGG | + | chr5.1:54788861-54788880 | None:intergenic | 45.0% | |
| GAAAAAGGATCAGCAGACAG+AGG | - | chr5.1:54788728-54788747 | MS.gene43808:intron | 45.0% | |
| GAAAGTCTCTCACCCAATCA+AGG | - | chr5.1:54791309-54791328 | MS.gene43808:intron | 45.0% | |
| GGATGTCAATCACTTTGCGT+CGG | - | chr5.1:54793700-54793719 | MS.gene43808:intron | 45.0% | |
| GGTAATCCAAAGTCGGACAA+CGG | + | chr5.1:54789723-54789742 | None:intergenic | 45.0% | |
| GTCAACTCTGCCAGAGAAAA+AGG | - | chr5.1:54792071-54792090 | MS.gene43808:intron | 45.0% | |
| TAACTGTTCCAGGAACGGTA+CGG | - | chr5.1:54793221-54793240 | MS.gene43808:CDS | 45.0% | |
| TATGATGAGCCTCATCAGCA+CGG | + | chr5.1:54790384-54790403 | None:intergenic | 45.0% | |
| TCAATAGCAATAGCAGGAGC+AGG | + | chr5.1:54793605-54793624 | None:intergenic | 45.0% | |
| TCAATTGCAATAGCAGGAGC+AGG | + | chr5.1:54790310-54790329 | None:intergenic | 45.0% | |
| TCACCGCTGTTGAAAAACTG+CGG | + | chr5.1:54788629-54788648 | None:intergenic | 45.0% | |
| TCACTAGGCCCAAGGTTAAA+AGG | - | chr5.1:54792160-54792179 | MS.gene43808:intron | 45.0% | |
| TGATTGGGTGAGAGACTTTC+AGG | + | chr5.1:54791309-54791328 | None:intergenic | 45.0% | |
| TGCCACAAAGGGAAGAAGAA+AGG | + | chr5.1:54791770-54791789 | None:intergenic | 45.0% | |
| TGCCAGAGAAAAAGGATCAG+CGG | - | chr5.1:54788721-54788740 | MS.gene43808:intron | 45.0% | |
| TGCTGATGAGGCTCATCATA+GGG | - | chr5.1:54790384-54790403 | MS.gene43808:intron | 45.0% | |
| TTAAGGAGGATGGAACTGAG+TGG | - | chr5.1:54788835-54788854 | MS.gene43808:intron | 45.0% | |
| TTGTCCGACTTTGGATTACC+AGG | - | chr5.1:54789723-54789742 | MS.gene43808:intron | 45.0% | |
| ! | AAGTTGGCATGAGAGGCTTT+TGG | - | chr5.1:54790126-54790145 | MS.gene43808:CDS | 45.0% |
| ! | CACTGTTATTCGTGCTGATG+AGG | - | chr5.1:54793667-54793686 | MS.gene43808:intron | 45.0% |
| ! | CCATCCTCCCTTTTAACCTT+GGG | + | chr5.1:54792171-54792190 | None:intergenic | 45.0% |
| ! | GTCTGCTGATCCTTTTTCTC+TGG | + | chr5.1:54788726-54788745 | None:intergenic | 45.0% |
| ! | TCCATCCTCCCTTTTAACCT+TGG | + | chr5.1:54792172-54792191 | None:intergenic | 45.0% |
| ! | TGAAACCAAGTTGGCATGAG+AGG | - | chr5.1:54790119-54790138 | MS.gene43808:CDS | 45.0% |
| !! | AAAAGCATCCCTCCGACTAT+TGG | + | chr5.1:54793287-54793306 | None:intergenic | 45.0% |
| !! | AGGGTTGATGCTTCACAGAA+TGG | - | chr5.1:54791369-54791388 | MS.gene43808:intron | 45.0% |
| !! | GGAAGAAGAAAGGTAGTGGA+AGG | + | chr5.1:54791760-54791779 | None:intergenic | 45.0% |
| !! | TTGTGATGGTGGATCGTGAT+TGG | - | chr5.1:54790542-54790561 | MS.gene43808:intron | 45.0% |
| !!! | GTTAGCAGCCACTAGCTTTT+TGG | + | chr5.1:54791642-54791661 | None:intergenic | 45.0% |
| !!! | TTTTTATTTATTTATAGTTA+TGG | + | chr5.1:54789654-54789673 | None:intergenic | 5.0% |
| AAAGGGAGGATGGAACTGAG+TGG | - | chr5.1:54792178-54792197 | MS.gene43808:intron | 50.0% | |
| AATAGCAGCTGTCCCTGGAA+TGG | - | chr5.1:54789973-54789992 | MS.gene43808:intron | 50.0% | |
| ATAAACCGCGGTGATAGCTC+TGG | + | chr5.1:54791978-54791997 | None:intergenic | 50.0% | |
| ATTGCCTACGCCTATCCACT+AGG | - | chr5.1:54793073-54793092 | MS.gene43808:intron | 50.0% | |
| CAGTAATAACAGCAACGCCG+TGG | - | chr5.1:54788776-54788795 | MS.gene43808:intron | 50.0% | |
| CCCAAGGTTAAAAGGGAGGA+TGG | - | chr5.1:54792168-54792187 | MS.gene43808:intron | 50.0% | |
| CGACTTTGGATTACCAGGTC+AGG | - | chr5.1:54789728-54789747 | MS.gene43808:intron | 50.0% | |
| CGGATGTCATGCAATGATGC+TGG | - | chr5.1:54793241-54793260 | MS.gene43808:CDS | 50.0% | |
| GAAAAAGGATCAGCGGTCAG+AGG | - | chr5.1:54792086-54792105 | MS.gene43808:intron | 50.0% | |
| GAAACAATAGCAGCTGTCCC+TGG | - | chr5.1:54789968-54789987 | MS.gene43808:intron | 50.0% | |
| GTGGATAGGCGTAGGCAATT+TGG | + | chr5.1:54793072-54793091 | None:intergenic | 50.0% | |
| GTGGCCATGGAACTGTTTCA+TGG | - | chr5.1:54792197-54792216 | MS.gene43808:intron | 50.0% | |
| TAACTTTCCCATGGCTGCAC+CGG | + | chr5.1:54792568-54792587 | None:intergenic | 50.0% | |
| TAGGCCCAAGGTTAAAAGGG+AGG | - | chr5.1:54792164-54792183 | MS.gene43808:intron | 50.0% | |
| TCACCGCGGTTTATCAACTG+CGG | - | chr5.1:54791984-54792003 | MS.gene43808:intron | 50.0% | |
| TCACGGAAAAAGTCCTGACC+TGG | + | chr5.1:54789744-54789763 | None:intergenic | 50.0% | |
| ! | AGTTCCTAGTGGATAGGCGT+AGG | + | chr5.1:54793080-54793099 | None:intergenic | 50.0% |
| ! | CACCGGTTGTTAATCAGCCT+CGG | - | chr5.1:54792961-54792980 | MS.gene43808:intron | 50.0% |
| ! | CACTGTTATCCGTGCTGATG+AGG | - | chr5.1:54790372-54790391 | MS.gene43808:intron | 50.0% |
| ! | GACCGCTGATCCTTTTTCTC+TGG | + | chr5.1:54792084-54792103 | None:intergenic | 50.0% |
| ! | GTGCTGATGAGGCTCATCAT+AGG | - | chr5.1:54790383-54790402 | MS.gene43808:intron | 50.0% |
| !! | ACACCGTCGTTTCGAGTTAC+TGG | - | chr5.1:54792133-54792152 | MS.gene43808:intron | 50.0% |
| !! | ACCGTCGTTTCGAGTTACTG+GGG | - | chr5.1:54792135-54792154 | MS.gene43808:intron | 50.0% |
| !! | CACCGTCGTTTCGAGTTACT+GGG | - | chr5.1:54792134-54792153 | MS.gene43808:intron | 50.0% |
| !! | CCACCGCAGTTTTTCAACAG+CGG | - | chr5.1:54788623-54788642 | MS.gene43808:intron | 50.0% |
| !! | TCACCGCAGTTGATAAACCG+CGG | + | chr5.1:54791990-54792009 | None:intergenic | 50.0% |
| AAAGAGGCTCCAGCTCCTGT+TGG | - | chr5.1:54791138-54791157 | MS.gene43808:intron | 55.0% | |
| AGACAACATCAGCATGGCGG+TGG | - | chr5.1:54788660-54788679 | MS.gene43808:intron | 55.0% | |
| AGCATCCCTCCGACTATTGG+CGG | + | chr5.1:54793284-54793303 | None:intergenic | 55.0% | |
| AGGATGGAACTGAGTGGCCA+TGG | - | chr5.1:54788841-54788860 | MS.gene43808:intron | 55.0% | |
| AGTAGCCAGAGCTATCACCG+CGG | - | chr5.1:54791970-54791989 | MS.gene43808:intron | 55.0% | |
| ATGATGTCCGGTGCAGCCAT+GGG | - | chr5.1:54792558-54792577 | MS.gene43808:CDS | 55.0% | |
| CAGCCGAGACAACATCAGCA+TGG | - | chr5.1:54788654-54788673 | MS.gene43808:intron | 55.0% | |
| CATGACATCCGTACCGTTCC+TGG | + | chr5.1:54793232-54793251 | None:intergenic | 55.0% | |
| CCCCCAGTAACTCGAAACCA+CGG | + | chr5.1:54788796-54788815 | None:intergenic | 55.0% | |
| CCCCCAGTAACTCGAAACGA+CGG | + | chr5.1:54792139-54792158 | None:intergenic | 55.0% | |
| CCGAGACAACATCAGCATGG+CGG | - | chr5.1:54788657-54788676 | MS.gene43808:intron | 55.0% | |
| CCGCCATGCTGATGTTGTCT+CGG | + | chr5.1:54788660-54788679 | None:intergenic | 55.0% | |
| CCGCTGTTGAAAAACTGCGG+TGG | + | chr5.1:54788626-54788645 | None:intergenic | 55.0% | |
| CGAGTTACTGGGGGATCACT+AGG | - | chr5.1:54792145-54792164 | MS.gene43808:intron | 55.0% | |
| CGAGTTACTGGGGGATCAGT+AGG | - | chr5.1:54788802-54788821 | MS.gene43808:intron | 55.0% | |
| GCGCTCTTGGAAGCTTCTAC+TGG | - | chr5.1:54792040-54792059 | MS.gene43808:intron | 55.0% | |
| GTGCGTGTGGAAGCTTGTAC+TGG | - | chr5.1:54788682-54788701 | MS.gene43808:intron | 55.0% | |
| GTGGCCATGGAACTGCTTCA+TGG | - | chr5.1:54788854-54788873 | MS.gene43808:intron | 55.0% | |
| GTTCAGCCGAGACACCAGAA+TGG | - | chr5.1:54792012-54792031 | MS.gene43808:intron | 55.0% | |
| TATGATGTCCGGTGCAGCCA+TGG | - | chr5.1:54792557-54792576 | MS.gene43808:CDS | 55.0% | |
| ! | GTGGAAGCTTGTACTGGCAG+AGG | - | chr5.1:54788688-54788707 | MS.gene43808:intron | 55.0% |
| !! | ACACGAGCTTTGTTCCGCAG+TGG | - | chr5.1:54788591-54788610 | MS.gene43808:CDS | 55.0% |
| !! | ACGCCGTGGTTTCGAGTTAC+TGG | - | chr5.1:54788790-54788809 | MS.gene43808:intron | 55.0% |
| !! | CCGTCGTTTCGAGTTACTGG+GGG | - | chr5.1:54792136-54792155 | MS.gene43808:intron | 55.0% |
| !! | CCGTGGTTTCGAGTTACTGG+GGG | - | chr5.1:54788793-54788812 | MS.gene43808:intron | 55.0% |
| !! | CGCCGTGGTTTCGAGTTACT+GGG | - | chr5.1:54788791-54788810 | MS.gene43808:intron | 55.0% |
| !! | GAGCTTTGTTCCGCAGTGGT+GGG | - | chr5.1:54788595-54788614 | MS.gene43808:CDS | 55.0% |
| !! | GCCGTGGTTTCGAGTTACTG+GGG | - | chr5.1:54788792-54788811 | MS.gene43808:intron | 55.0% |
| AGCAGCTGTCCCTGGAATGG+TGG | - | chr5.1:54789976-54789995 | MS.gene43808:intron | 60.0% | |
| AGCATCCCTCCCACCATTCC+AGG | + | chr5.1:54789989-54790008 | None:intergenic | 60.0% | |
| CAGCCGAGACACCAGAATGG+CGG | - | chr5.1:54792015-54792034 | MS.gene43808:intron | 60.0% | |
| CCACCGCCATTCTGGTGTCT+CGG | + | chr5.1:54792021-54792040 | None:intergenic | 60.0% | |
| GCAGCTGTCCCTGGAATGGT+GGG | - | chr5.1:54789977-54789996 | MS.gene43808:intron | 60.0% | |
| GCATCCCTCCCACCATTCCA+GGG | + | chr5.1:54789988-54790007 | None:intergenic | 60.0% | |
| GCATCCCTCCGACTATTGGC+GGG | + | chr5.1:54793283-54793302 | None:intergenic | 60.0% | |
| GGTGGTAGTTCCCACCACTG+CGG | + | chr5.1:54788608-54788627 | None:intergenic | 60.0% | |
| ! | CTGTCCCTGGAATGGTGGGA+GGG | - | chr5.1:54789981-54790000 | MS.gene43808:intron | 60.0% |
| !! | CGAGCTTTGTTCCGCAGTGG+TGG | - | chr5.1:54788594-54788613 | MS.gene43808:CDS | 60.0% |
| CAGAATGGCGGTGGCGCTCT+TGG | - | chr5.1:54792027-54792046 | MS.gene43808:intron | 65.0% | |
| CCCTCCGACTATTGGCGGGA+CGG | + | chr5.1:54793279-54793298 | None:intergenic | 65.0% | |
| CCGAGACACCAGAATGGCGG+TGG | - | chr5.1:54792018-54792037 | MS.gene43808:intron | 65.0% | |
| CCGTCCCGCCAATAGTCGGA+GGG | - | chr5.1:54793276-54793295 | MS.gene43808:CDS | 65.0% | |
| CTGGGGGATCACTAGGCCCA+AGG | - | chr5.1:54792152-54792171 | MS.gene43808:intron | 65.0% | |
| GCAGCCGTCCCGCCAATAGT+CGG | - | chr5.1:54793272-54793291 | MS.gene43808:CDS | 65.0% | |
| ! | GCTGTCCCTGGAATGGTGGG+AGG | - | chr5.1:54789980-54789999 | MS.gene43808:intron | 65.0% |
| !! | CAAGAGCGCCACCGCCATTC+TGG | + | chr5.1:54792029-54792048 | None:intergenic | 65.0% |
| CAGCATGGCGGTGGTGCGTG+TGG | - | chr5.1:54788669-54788688 | MS.gene43808:intron | 70.0% | |
| GCCGTCCCGCCAATAGTCGG+AGG | - | chr5.1:54793275-54793294 | MS.gene43808:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 54788564 | 54794249 | 54788564 | ID=MS.gene43808 |
| chr5.1 | mRNA | 54788564 | 54794249 | 54788564 | ID=MS.gene43808.t1;Parent=MS.gene43808 |
| chr5.1 | exon | 54793938 | 54794249 | 54793938 | ID=MS.gene43808.t1.exon1;Parent=MS.gene43808.t1 |
| chr5.1 | CDS | 54793938 | 54794249 | 54793938 | ID=cds.MS.gene43808.t1;Parent=MS.gene43808.t1 |
| chr5.1 | exon | 54793199 | 54793327 | 54793199 | ID=MS.gene43808.t1.exon2;Parent=MS.gene43808.t1 |
| chr5.1 | CDS | 54793199 | 54793327 | 54793199 | ID=cds.MS.gene43808.t1;Parent=MS.gene43808.t1 |
| chr5.1 | exon | 54792387 | 54792875 | 54792387 | ID=MS.gene43808.t1.exon3;Parent=MS.gene43808.t1 |
| chr5.1 | CDS | 54792387 | 54792875 | 54792387 | ID=cds.MS.gene43808.t1;Parent=MS.gene43808.t1 |
| chr5.1 | exon | 54791654 | 54791702 | 54791654 | ID=MS.gene43808.t1.exon4;Parent=MS.gene43808.t1 |
| chr5.1 | CDS | 54791654 | 54791702 | 54791654 | ID=cds.MS.gene43808.t1;Parent=MS.gene43808.t1 |
| chr5.1 | exon | 54790595 | 54790899 | 54790595 | ID=MS.gene43808.t1.exon5;Parent=MS.gene43808.t1 |
| chr5.1 | CDS | 54790595 | 54790899 | 54790595 | ID=cds.MS.gene43808.t1;Parent=MS.gene43808.t1 |
| chr5.1 | exon | 54790111 | 54790239 | 54790111 | ID=MS.gene43808.t1.exon6;Parent=MS.gene43808.t1 |
| chr5.1 | CDS | 54790111 | 54790239 | 54790111 | ID=cds.MS.gene43808.t1;Parent=MS.gene43808.t1 |
| chr5.1 | exon | 54789092 | 54789580 | 54789092 | ID=MS.gene43808.t1.exon7;Parent=MS.gene43808.t1 |
| chr5.1 | CDS | 54789092 | 54789580 | 54789092 | ID=cds.MS.gene43808.t1;Parent=MS.gene43808.t1 |
| chr5.1 | exon | 54788564 | 54788623 | 54788564 | ID=MS.gene43808.t1.exon8;Parent=MS.gene43808.t1 |
| chr5.1 | CDS | 54788564 | 54788623 | 54788564 | ID=cds.MS.gene43808.t1;Parent=MS.gene43808.t1 |
| Gene Sequence |
| Protein sequence |
