Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43981.t1 | PNY15309.1 | 87.8 | 213 | 24 | 2 | 1 | 212 | 1 | 212 | 7.60E-63 | 250.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43981.t1 | Q8L8A5 | 87.1 | 85 | 11 | 0 | 1 | 85 | 1 | 85 | 5.7e-35 | 149.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43981.t1 | A0A2K3PJ43 | 87.8 | 213 | 24 | 2 | 1 | 212 | 1 | 212 | 5.5e-63 | 250.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051914 | MS.gene43981 | 0.803254 | 3.81E-49 | -1.69E-46 |
| MS.gene054662 | MS.gene43981 | 0.800125 | 1.67E-48 | -1.69E-46 |
| MS.gene05640 | MS.gene43981 | 0.857951 | 1.15E-62 | -1.69E-46 |
| MS.gene05652 | MS.gene43981 | 0.821973 | 3.04E-53 | -1.69E-46 |
| MS.gene057669 | MS.gene43981 | 0.814551 | 1.45E-51 | -1.69E-46 |
| MS.gene058128 | MS.gene43981 | 0.813678 | 2.27E-51 | -1.69E-46 |
| MS.gene058853 | MS.gene43981 | 0.815157 | 1.07E-51 | -1.69E-46 |
| MS.gene060291 | MS.gene43981 | 0.805693 | 1.18E-49 | -1.69E-46 |
| MS.gene06093 | MS.gene43981 | 0.827066 | 1.92E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43981.t1 | MTR_1g080590 | 97.170 | 212 | 5 | 1 | 1 | 212 | 1 | 211 | 4.30e-146 | 405 |
| MS.gene43981.t1 | MTR_1g080590 | 96.667 | 150 | 4 | 1 | 63 | 212 | 1 | 149 | 1.23e-95 | 275 |
| MS.gene43981.t1 | MTR_7g115410 | 56.951 | 223 | 70 | 10 | 11 | 212 | 1 | 218 | 1.43e-42 | 143 |
| MS.gene43981.t1 | MTR_8g024650 | 59.783 | 92 | 33 | 3 | 7 | 96 | 6 | 95 | 1.72e-27 | 104 |
| MS.gene43981.t1 | MTR_3g097190 | 46.980 | 149 | 43 | 2 | 38 | 186 | 69 | 181 | 2.02e-20 | 84.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43981.t1 | AT5G28640 | 58.621 | 232 | 54 | 7 | 1 | 212 | 1 | 210 | 2.89e-57 | 180 |
| MS.gene43981.t1 | AT4G00850 | 38.596 | 228 | 95 | 9 | 7 | 202 | 6 | 220 | 2.12e-28 | 106 |
| MS.gene43981.t1 | AT4G00850 | 51.786 | 112 | 42 | 3 | 7 | 106 | 6 | 117 | 1.70e-26 | 102 |
| MS.gene43981.t1 | AT1G01160 | 62.500 | 72 | 26 | 1 | 2 | 72 | 3 | 74 | 5.69e-23 | 92.0 |
| MS.gene43981.t1 | AT1G01160 | 42.453 | 106 | 26 | 2 | 2 | 72 | 3 | 108 | 4.46e-16 | 74.3 |
| MS.gene43981.t1 | AT5G28640 | 46.471 | 170 | 49 | 7 | 63 | 212 | 1 | 148 | 3.01e-11 | 59.7 |
| MS.gene43981.t1 | AT5G28640 | 46.471 | 170 | 49 | 7 | 63 | 212 | 1 | 148 | 3.01e-11 | 59.7 |
Find 61 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGGAGGCAATTCATCTTT+AGG | 0.260252 | 1.3:-57018448 | MS.gene43981:CDS |
| GATGACACAACAACAATTAA+TGG | 0.291040 | 1.3:-57018593 | MS.gene43981:CDS |
| CGGTGAGCTTGCCAGAGTTC+TGG | 0.291829 | 1.3:+57019781 | None:intergenic |
| ACCCTTTACCTAAAATCTTC+TGG | 0.314141 | 1.3:-57018295 | MS.gene43981:CDS |
| GCCAGGCATAGTAGGTGGTT+GGG | 0.340247 | 1.3:+57019159 | None:intergenic |
| GATTTCTCTGCAGCCTTGAT+TGG | 0.360123 | 1.3:+57019215 | None:intergenic |
| TCATGGGCTGCATCTGCATC+AGG | 0.386454 | 1.3:+57020073 | None:intergenic |
| GGCCAGGCATAGTAGGTGGT+TGG | 0.392149 | 1.3:+57019158 | None:intergenic |
| TGATCAGTAGTGACGTTGTT+AGG | 0.399937 | 1.3:+57020036 | None:intergenic |
| TGCTGCATCATTCCACTTGA+AGG | 0.403024 | 1.3:+57018652 | None:intergenic |
| GCCGAGCCACGACCAAAATC+AGG | 0.413508 | 1.3:+57018412 | None:intergenic |
| ATAATTTCAGGAACCAATCA+AGG | 0.430139 | 1.3:-57019228 | MS.gene43981:intron |
| TTCAACAATCTTGAGAATCA+AGG | 0.434695 | 1.3:+57019806 | None:intergenic |
| CACTACTGATCATATTCAAC+AGG | 0.437472 | 1.3:-57020025 | MS.gene43981:intron |
| CAAGCCTTGCAAAGCCAACT+TGG | 0.444688 | 1.3:-57018526 | MS.gene43981:CDS |
| CCAGGCATAGTAGGTGGTTG+GGG | 0.455596 | 1.3:+57019160 | None:intergenic |
| TACCTAAAATCTTCTGGTGA+TGG | 0.461677 | 1.3:-57018289 | MS.gene43981:CDS |
| ACCTAAAATCTTCTGGTGAT+GGG | 0.465114 | 1.3:-57018288 | MS.gene43981:CDS |
| CACTTGAATTCATACCAAGT+TGG | 0.467641 | 1.3:+57018512 | None:intergenic |
| GGTCGTGGCTCGGCTGGCGA+TGG | 0.468159 | 1.3:-57018403 | MS.gene43981:CDS |
| GGCAATTCATCTTTAGGTAC+CGG | 0.471237 | 1.3:-57018442 | MS.gene43981:CDS |
| GGCGATGGTTTGCACGGTAG+TGG | 0.476147 | 1.3:-57018388 | MS.gene43981:CDS |
| CCCCAACCACCTACTATGCC+TGG | 0.488367 | 1.3:-57019160 | MS.gene43981:CDS |
| TGTACCTGGCCAGGCATAGT+AGG | 0.488714 | 1.3:+57019151 | None:intergenic |
| GGATAGTAAGCTGCCATCAT+GGG | 0.492977 | 1.3:+57020057 | None:intergenic |
| AGATAGGGATGTACCTGGCC+AGG | 0.493842 | 1.3:+57019142 | None:intergenic |
| TTCAAGTGGAATGATGCAGC+AGG | 0.504147 | 1.3:-57018650 | MS.gene43981:CDS |
| CATACCAAGTTGGCTTTGCA+AGG | 0.510371 | 1.3:+57018522 | None:intergenic |
| AGGATAGTAAGCTGCCATCA+TGG | 0.510940 | 1.3:+57020056 | None:intergenic |
| CTTCACATGTTGCATAGTGA+AGG | 0.521552 | 1.3:-57018478 | MS.gene43981:CDS |
| CATAGTGAAGGGGCTAATGT+TGG | 0.526222 | 1.3:-57018466 | MS.gene43981:CDS |
| GGCCGCGGTGGAAGCTCTAG+TGG | 0.537316 | 1.3:-57018340 | MS.gene43981:CDS |
| CTTCACTATGCAACATGTGA+AGG | 0.550899 | 1.3:+57018479 | None:intergenic |
| AGTGAAGGGGCTAATGTTGG+AGG | 0.551470 | 1.3:-57018463 | MS.gene43981:CDS |
| CTGTTCTTACTCAGCACACT+CGG | 0.552381 | 1.3:+57019761 | None:intergenic |
| TTCACATGTTGCATAGTGAA+GGG | 0.554627 | 1.3:-57018477 | MS.gene43981:CDS |
| ATTGTTGAAAGCCAGAACTC+TGG | 0.560643 | 1.3:-57019792 | MS.gene43981:CDS |
| ACCACCTACTATGCCTGGCC+AGG | 0.560989 | 1.3:-57019155 | MS.gene43981:intron |
| ACCAAAATCAGGAAAACCTC+CGG | 0.563823 | 1.3:+57018423 | None:intergenic |
| TCGGCTGGCGATGGTTTGCA+CGG | 0.568084 | 1.3:-57018394 | MS.gene43981:CDS |
| TCTAGTGGTCACTCTGGTGA+TGG | 0.573573 | 1.3:-57018325 | MS.gene43981:CDS |
| ATTGGAAATGCTGATGGCCG+CGG | 0.588259 | 1.3:-57018355 | MS.gene43981:CDS |
| CAAGACATTGGAAATGCTGA+TGG | 0.594143 | 1.3:-57018361 | MS.gene43981:CDS |
| GAGAATCAGCTATTGCAGCT+AGG | 0.595794 | 1.3:+57019185 | None:intergenic |
| ATGAATTCAAGTGGAAGTCA+AGG | 0.599898 | 1.3:-57018502 | MS.gene43981:CDS |
| GGTAGTGGTAAGCAAGACAT+TGG | 0.605024 | 1.3:-57018373 | MS.gene43981:CDS |
| CAACTTGGTATGAATTCAAG+TGG | 0.605659 | 1.3:-57018511 | MS.gene43981:CDS |
| ACATTGCAGTACCCTTCAAG+TGG | 0.608273 | 1.3:-57018664 | MS.gene43981:intron |
| GCTGCATCATTCCACTTGAA+GGG | 0.611938 | 1.3:+57018653 | None:intergenic |
| GGAAGCTCTAGTGGTCACTC+TGG | 0.631800 | 1.3:-57018331 | MS.gene43981:CDS |
| GATGCAGATGCAGCCCATGA+TGG | 0.647712 | 1.3:-57020070 | MS.gene43981:CDS |
| GCAGGGAGGACACTACATGC+AGG | 0.651199 | 1.3:-57018632 | MS.gene43981:CDS |
| TCACATGTTGCATAGTGAAG+GGG | 0.652179 | 1.3:-57018476 | MS.gene43981:CDS |
| ACCTGGCCAGGCATAGTAGG+TGG | 0.657105 | 1.3:+57019154 | None:intergenic |
| AATTCATCTTTAGGTACCGG+AGG | 0.658999 | 1.3:-57018439 | MS.gene43981:CDS |
| AGTGGTCACTCTGGTGATGG+CGG | 0.666560 | 1.3:-57018322 | MS.gene43981:CDS |
| CTGTTGAGCATACATAAGAG+AGG | 0.666776 | 1.3:+57018561 | None:intergenic |
| TCAAGTGGAATGATGCAGCA+GGG | 0.669197 | 1.3:-57018649 | MS.gene43981:CDS |
| GGAAATGCTGATGGCCGCGG+TGG | 0.681161 | 1.3:-57018352 | MS.gene43981:CDS |
| AGTGGAATGATGCAGCAGGG+AGG | 0.729356 | 1.3:-57018646 | MS.gene43981:CDS |
| GACCACTAGAGCTTCCACCG+CGG | 0.784566 | 1.3:+57018338 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAAATAAATAGTTAAAAAA+AGG | + | chr1.3:57018501-57018520 | None:intergenic | 10.0% |
| !!! | AGAAAAACTTTATTTTATTA+AGG | + | chr1.3:57018747-57018766 | None:intergenic | 10.0% |
| !! | AAATAATAGTAAAATGTATC+AGG | - | chr1.3:57019553-57019572 | MS.gene43981:intron | 15.0% |
| !!! | TTTATTTTATTAAGGTTTGT+GGG | + | chr1.3:57018739-57018758 | None:intergenic | 15.0% |
| !! | AAACATATTCATATGTACAA+GGG | + | chr1.3:57019481-57019500 | None:intergenic | 20.0% |
| !! | CATATAGTAAGAAAAACAAA+AGG | - | chr1.3:57019407-57019426 | MS.gene43981:intron | 20.0% |
| !! | GAAAAATCCAATAATTGTTT+AGG | + | chr1.3:57019096-57019115 | None:intergenic | 20.0% |
| !! | GTATATACCTAAACAATTAT+TGG | - | chr1.3:57019086-57019105 | MS.gene43981:intron | 20.0% |
| !! | GTGAAAAATGAAAATTAGAA+AGG | + | chr1.3:57019388-57019407 | None:intergenic | 20.0% |
| !! | TAAACATATTCATATGTACA+AGG | + | chr1.3:57019482-57019501 | None:intergenic | 20.0% |
| !!! | CTTTATTTTATTAAGGTTTG+TGG | + | chr1.3:57018740-57018759 | None:intergenic | 20.0% |
| !!! | TTATTTTATTAAGGTTTGTG+GGG | + | chr1.3:57018738-57018757 | None:intergenic | 20.0% |
| !!! | TTTACTAGTATTAGCTTTTT+TGG | - | chr1.3:57018875-57018894 | MS.gene43981:intron | 20.0% |
| ! | AGAAAGAAAGAAGAAAAGAA+AGG | + | chr1.3:57018369-57018388 | None:intergenic | 25.0% |
| ! | AGAACCACAAAGATTATTTA+GGG | + | chr1.3:57019118-57019137 | None:intergenic | 25.0% |
| ! | ATTAATACTACTAAGCATCA+TGG | + | chr1.3:57019516-57019535 | None:intergenic | 25.0% |
| ! | CCTAACTTTCTCTTATAAAT+AGG | + | chr1.3:57018973-57018992 | None:intergenic | 25.0% |
| ! | CCTATTTACAAGAGAAATTT+GGG | + | chr1.3:57019055-57019074 | None:intergenic | 25.0% |
| ! | CCTATTTATAAGAGAAAGTT+AGG | - | chr1.3:57018970-57018989 | MS.gene43981:intron | 25.0% |
| ! | GAAAATTAGAAAGGAAACTA+GGG | + | chr1.3:57019379-57019398 | None:intergenic | 25.0% |
| ! | GTATTAATTAAGCGTACATT+TGG | - | chr1.3:57019528-57019547 | MS.gene43981:intron | 25.0% |
| ! | TAGAACCACAAAGATTATTT+AGG | + | chr1.3:57019119-57019138 | None:intergenic | 25.0% |
| ! | TCAACAAAAGTGAATGTATT+TGG | - | chr1.3:57018993-57019012 | MS.gene43981:intron | 25.0% |
| ! | TCCTATTTACAAGAGAAATT+TGG | + | chr1.3:57019056-57019075 | None:intergenic | 25.0% |
| ! | TGAAAATTAGAAAGGAAACT+AGG | + | chr1.3:57019380-57019399 | None:intergenic | 25.0% |
| !! | AACACAAATTTCTTCTAAAG+AGG | - | chr1.3:57019603-57019622 | MS.gene43981:intron | 25.0% |
| !! | ACAACATTCTGAAAATAGAT+AGG | + | chr1.3:57019243-57019262 | None:intergenic | 25.0% |
| !! | ACACAAATTTCTTCTAAAGA+GGG | - | chr1.3:57019604-57019623 | MS.gene43981:intron | 25.0% |
| !! | CAACATTCTGAAAATAGATA+GGG | + | chr1.3:57019242-57019261 | None:intergenic | 25.0% |
| !! | CTAAAATGTTACAACCTTTT+TGG | - | chr1.3:57018821-57018840 | MS.gene43981:intron | 25.0% |
| !! | TTTTCCCTAAATAATCTTTG+TGG | - | chr1.3:57019111-57019130 | MS.gene43981:intron | 25.0% |
| AAAACATCTAGACACACAAT+AGG | + | chr1.3:57019451-57019470 | None:intergenic | 30.0% | |
| ACAAATCAATCATTGTTGTG+AGG | + | chr1.3:57019298-57019317 | None:intergenic | 30.0% | |
| ACATAAAAAGAGCTAGAGTT+TGG | + | chr1.3:57019356-57019375 | None:intergenic | 30.0% | |
| AGATCAAAATTCTGCTTACT+TGG | - | chr1.3:57018919-57018938 | MS.gene43981:intron | 30.0% | |
| ATAATTTCAGGAACCAATCA+AGG | - | chr1.3:57019138-57019157 | MS.gene43981:intron | 30.0% | |
| ATTTCTCTTGTAAATAGGAC+CGG | - | chr1.3:57019057-57019076 | MS.gene43981:intron | 30.0% | |
| CCAATGGAATTGAAACAAAA+AGG | + | chr1.3:57018404-57018423 | None:intergenic | 30.0% | |
| CCCAAATTTCTCTTGTAAAT+AGG | - | chr1.3:57019052-57019071 | MS.gene43981:intron | 30.0% | |
| CTTTCTCTTATAAATAGGAC+CGG | + | chr1.3:57018968-57018987 | None:intergenic | 30.0% | |
| GATGACACAACAACAATTAA+TGG | - | chr1.3:57019773-57019792 | MS.gene43981:CDS | 30.0% | |
| GGGTTTATATTTAGACACAT+AGG | - | chr1.3:57019624-57019643 | MS.gene43981:intron | 30.0% | |
| TTCAACAATCTTGAGAATCA+AGG | + | chr1.3:57018563-57018582 | None:intergenic | 30.0% | |
| ! | ATTACTGCTATTTGACCATT+TGG | - | chr1.3:57019660-57019679 | MS.gene43981:intron | 30.0% |
| ! | CTTTGTGGTTCTATAATTTC+AGG | - | chr1.3:57019126-57019145 | MS.gene43981:intron | 30.0% |
| !! | ACCAGAAGATTTTAGGTAAA+GGG | + | chr1.3:57020075-57020094 | None:intergenic | 30.0% |
| !! | CCTTTTTGTTTCAATTCCAT+TGG | - | chr1.3:57018401-57018420 | MS.gene43981:CDS | 30.0% |
| !!! | ACTAGTATTAGCTTTTTTGG+TGG | - | chr1.3:57018878-57018897 | MS.gene43981:intron | 30.0% |
| !!! | CTAGTATTAGCTTTTTTGGT+GGG | - | chr1.3:57018879-57018898 | MS.gene43981:intron | 30.0% |
| !!! | GTCATCATGTTTTGAAACTT+TGG | + | chr1.3:57018795-57018814 | None:intergenic | 30.0% |
| !!! | TAGTATTAGCTTTTTTGGTG+GGG | - | chr1.3:57018880-57018899 | MS.gene43981:intron | 30.0% |
| !!! | TGTCACTTTCTATATTTTGC+AGG | - | chr1.3:57018681-57018700 | MS.gene43981:intron | 30.0% |
| AAAATAGATAGGGATGTACC+TGG | + | chr1.3:57019232-57019251 | None:intergenic | 35.0% | |
| ACCCTTTACCTAAAATCTTC+TGG | - | chr1.3:57020071-57020090 | MS.gene43981:CDS | 35.0% | |
| ACCTAAAATCTTCTGGTGAT+GGG | - | chr1.3:57020078-57020097 | MS.gene43981:CDS | 35.0% | |
| ATGAATTCAAGTGGAAGTCA+AGG | - | chr1.3:57019864-57019883 | MS.gene43981:intron | 35.0% | |
| ATGTCATTCAGAAGATTGTG+AGG | + | chr1.3:57019686-57019705 | None:intergenic | 35.0% | |
| CAACTTGGTATGAATTCAAG+TGG | - | chr1.3:57019855-57019874 | MS.gene43981:intron | 35.0% | |
| CACTACTGATCATATTCAAC+AGG | - | chr1.3:57018341-57018360 | MS.gene43981:CDS | 35.0% | |
| CACTTGAATTCATACCAAGT+TGG | + | chr1.3:57019857-57019876 | None:intergenic | 35.0% | |
| TACAAGTGACCACTTAGAAA+GGG | - | chr1.3:57019267-57019286 | MS.gene43981:intron | 35.0% | |
| TACCTAAAATCTTCTGGTGA+TGG | - | chr1.3:57020077-57020096 | MS.gene43981:CDS | 35.0% | |
| TTCACATGTTGCATAGTGAA+GGG | - | chr1.3:57019889-57019908 | MS.gene43981:intron | 35.0% | |
| TTTCTCTTGTAAATAGGACC+GGG | - | chr1.3:57019058-57019077 | MS.gene43981:intron | 35.0% | |
| !! | CACCAGAAGATTTTAGGTAA+AGG | + | chr1.3:57020076-57020095 | None:intergenic | 35.0% |
| !!! | AGTATTAGCTTTTTTGGTGG+GGG | - | chr1.3:57018881-57018900 | MS.gene43981:intron | 35.0% |
| !!! | TTTTTCTAAGATGTGGGAGT+GGG | - | chr1.3:57018705-57018724 | MS.gene43981:intron | 35.0% |
| AAGAGCTAGAGTTTGGTACA+TGG | + | chr1.3:57019349-57019368 | None:intergenic | 40.0% | |
| ACAAGTGACCACTTAGAAAG+GGG | - | chr1.3:57019268-57019287 | MS.gene43981:intron | 40.0% | |
| ACCAAAATCAGGAAAACCTC+CGG | + | chr1.3:57019946-57019965 | None:intergenic | 40.0% | |
| AGATAGAAGAATACTCCCTC+CGG | - | chr1.3:57018946-57018965 | MS.gene43981:intron | 40.0% | |
| ATTGTTGAAAGCCAGAACTC+TGG | - | chr1.3:57018574-57018593 | MS.gene43981:CDS | 40.0% | |
| CAAGACATTGGAAATGCTGA+TGG | - | chr1.3:57020005-57020024 | MS.gene43981:intron | 40.0% | |
| CTCTTATAAATAGGACCGGA+GGG | + | chr1.3:57018964-57018983 | None:intergenic | 40.0% | |
| CTGTTGAGCATACATAAGAG+AGG | + | chr1.3:57019808-57019827 | None:intergenic | 40.0% | |
| CTTCACATGTTGCATAGTGA+AGG | - | chr1.3:57019888-57019907 | MS.gene43981:intron | 40.0% | |
| CTTCACTATGCAACATGTGA+AGG | + | chr1.3:57019890-57019909 | None:intergenic | 40.0% | |
| GGCAATTCATCTTTAGGTAC+CGG | - | chr1.3:57019924-57019943 | MS.gene43981:intron | 40.0% | |
| GTACAAGTGACCACTTAGAA+AGG | - | chr1.3:57019266-57019285 | MS.gene43981:intron | 40.0% | |
| GTTGGAGGCAATTCATCTTT+AGG | - | chr1.3:57019918-57019937 | MS.gene43981:intron | 40.0% | |
| TCAAGATGCTGTTGCCAAAA+AGG | + | chr1.3:57018838-57018857 | None:intergenic | 40.0% | |
| TCACATGTTGCATAGTGAAG+GGG | - | chr1.3:57019890-57019909 | MS.gene43981:intron | 40.0% | |
| TCTCTTATAAATAGGACCGG+AGG | + | chr1.3:57018965-57018984 | None:intergenic | 40.0% | |
| TGATCAGTAGTGACGTTGTT+AGG | + | chr1.3:57018333-57018352 | None:intergenic | 40.0% | |
| TTTAGGTATATACTCCCTCC+CGG | + | chr1.3:57019079-57019098 | None:intergenic | 40.0% | |
| ! | TCCCATCACCAGAAGATTTT+AGG | + | chr1.3:57020082-57020101 | None:intergenic | 40.0% |
| !! | AATTCATCTTTAGGTACCGG+AGG | - | chr1.3:57019927-57019946 | MS.gene43981:intron | 40.0% |
| !! | AGCAGAGAAAGAGTATCCAA+TGG | + | chr1.3:57018420-57018439 | None:intergenic | 40.0% |
| !!! | CTTTTTCTAAGATGTGGGAG+TGG | - | chr1.3:57018704-57018723 | MS.gene43981:intron | 40.0% |
| !!! | GCAGGCTTTTTCTAAGATGT+GGG | - | chr1.3:57018699-57018718 | MS.gene43981:intron | 40.0% |
| !!! | TGCAGGCTTTTTCTAAGATG+TGG | - | chr1.3:57018698-57018717 | MS.gene43981:intron | 40.0% |
| ACATTGCAGTACCCTTCAAG+TGG | - | chr1.3:57019702-57019721 | MS.gene43981:intron | 45.0% | |
| AGGATAGTAAGCTGCCATCA+TGG | + | chr1.3:57018313-57018332 | None:intergenic | 45.0% | |
| CAGAAGATTGTGAGGCCAAA+TGG | + | chr1.3:57019678-57019697 | None:intergenic | 45.0% | |
| CATAGTGAAGGGGCTAATGT+TGG | - | chr1.3:57019900-57019919 | MS.gene43981:intron | 45.0% | |
| CTGTTCTTACTCAGCACACT+CGG | + | chr1.3:57018608-57018627 | None:intergenic | 45.0% | |
| GAGAATCAGCTATTGCAGCT+AGG | + | chr1.3:57019184-57019203 | None:intergenic | 45.0% | |
| GATTTCTCTGCAGCCTTGAT+TGG | + | chr1.3:57019154-57019173 | None:intergenic | 45.0% | |
| GCTGCATCATTCCACTTGAA+GGG | + | chr1.3:57019716-57019735 | None:intergenic | 45.0% | |
| GGATAGTAAGCTGCCATCAT+GGG | + | chr1.3:57018312-57018331 | None:intergenic | 45.0% | |
| TCAAGTGGAATGATGCAGCA+GGG | - | chr1.3:57019717-57019736 | MS.gene43981:intron | 45.0% | |
| TCTTGTAAATAGGACCGGGA+GGG | - | chr1.3:57019062-57019081 | MS.gene43981:intron | 45.0% | |
| TGCTGCATCATTCCACTTGA+AGG | + | chr1.3:57019717-57019736 | None:intergenic | 45.0% | |
| TTCAAGTGGAATGATGCAGC+AGG | - | chr1.3:57019716-57019735 | MS.gene43981:intron | 45.0% | |
| ! | ACCGGAGGTTTTCCTGATTT+TGG | - | chr1.3:57019942-57019961 | MS.gene43981:intron | 45.0% |
| ! | GGTAGTGGTAAGCAAGACAT+TGG | - | chr1.3:57019993-57020012 | MS.gene43981:intron | 45.0% |
| !! | CATACCAAGTTGGCTTTGCA+AGG | + | chr1.3:57019847-57019866 | None:intergenic | 45.0% |
| !! | GGTTTTCCTGATTTTGGTCG+TGG | - | chr1.3:57019948-57019967 | MS.gene43981:intron | 45.0% |
| !!! | ATTAGCTTTTTTGGTGGGGG+AGG | - | chr1.3:57018884-57018903 | MS.gene43981:intron | 45.0% |
| !!! | TTAGCTTTTTTGGTGGGGGA+GGG | - | chr1.3:57018885-57018904 | MS.gene43981:intron | 45.0% |
| !! | AAAATAAATAGTTAAAAAAA+GGG | + | chr1.3:57018500-57018519 | None:intergenic | 5.0% |
| !!! | TTTGAAATAAAATTTATTTT+TGG | - | chr1.3:57019579-57019598 | MS.gene43981:intron | 5.0% |
| AGTGAAGGGGCTAATGTTGG+AGG | - | chr1.3:57019903-57019922 | MS.gene43981:intron | 50.0% | |
| ATTGGAAATGCTGATGGCCG+CGG | - | chr1.3:57020011-57020030 | MS.gene43981:intron | 50.0% | |
| CAAGCCTTGCAAAGCCAACT+TGG | - | chr1.3:57019840-57019859 | MS.gene43981:intron | 50.0% | |
| CTCTTGTAAATAGGACCGGG+AGG | - | chr1.3:57019061-57019080 | MS.gene43981:intron | 50.0% | |
| GAGGTGAACCCCTTTCTAAG+TGG | + | chr1.3:57019279-57019298 | None:intergenic | 50.0% | |
| TCTAGTGGTCACTCTGGTGA+TGG | - | chr1.3:57020041-57020060 | MS.gene43981:CDS | 50.0% | |
| !! | TCCTGATTTTGGTCGTGGCT+CGG | - | chr1.3:57019953-57019972 | MS.gene43981:intron | 50.0% |
| AGATAGGGATGTACCTGGCC+AGG | + | chr1.3:57019227-57019246 | None:intergenic | 55.0% | |
| AGTGGAATGATGCAGCAGGG+AGG | - | chr1.3:57019720-57019739 | MS.gene43981:intron | 55.0% | |
| CCAGGCATAGTAGGTGGTTG+GGG | + | chr1.3:57019209-57019228 | None:intergenic | 55.0% | |
| GATGCAGATGCAGCCCATGA+TGG | - | chr1.3:57018296-57018315 | MS.gene43981:CDS | 55.0% | |
| GCCAGGCATAGTAGGTGGTT+GGG | + | chr1.3:57019210-57019229 | None:intergenic | 55.0% | |
| TGTACCTGGCCAGGCATAGT+AGG | + | chr1.3:57019218-57019237 | None:intergenic | 55.0% | |
| ! | GGAAGCTCTAGTGGTCACTC+TGG | - | chr1.3:57020035-57020054 | MS.gene43981:CDS | 55.0% |
| ! | TCATGGGCTGCATCTGCATC+AGG | + | chr1.3:57018296-57018315 | None:intergenic | 55.0% |
| !! | AGTGGTCACTCTGGTGATGG+CGG | - | chr1.3:57020044-57020063 | MS.gene43981:CDS | 55.0% |
| ACCACCTACTATGCCTGGCC+AGG | - | chr1.3:57019211-57019230 | MS.gene43981:CDS | 60.0% | |
| ACCTGGCCAGGCATAGTAGG+TGG | + | chr1.3:57019215-57019234 | None:intergenic | 60.0% | |
| CCCCAACCACCTACTATGCC+TGG | - | chr1.3:57019206-57019225 | MS.gene43981:CDS | 60.0% | |
| CGGTGAGCTTGCCAGAGTTC+TGG | + | chr1.3:57018588-57018607 | None:intergenic | 60.0% | |
| GACCACTAGAGCTTCCACCG+CGG | + | chr1.3:57020031-57020050 | None:intergenic | 60.0% | |
| GCAGGGAGGACACTACATGC+AGG | - | chr1.3:57019734-57019753 | MS.gene43981:intron | 60.0% | |
| GCCGAGCCACGACCAAAATC+AGG | + | chr1.3:57019957-57019976 | None:intergenic | 60.0% | |
| GGCCAGGCATAGTAGGTGGT+TGG | + | chr1.3:57019211-57019230 | None:intergenic | 60.0% | |
| ! | GGCGATGGTTTGCACGGTAG+TGG | - | chr1.3:57019978-57019997 | MS.gene43981:intron | 60.0% |
| ! | TCGGCTGGCGATGGTTTGCA+CGG | - | chr1.3:57019972-57019991 | MS.gene43981:intron | 60.0% |
| !! | GATTTTGGTCGTGGCTCGGC+TGG | - | chr1.3:57019957-57019976 | MS.gene43981:intron | 60.0% |
| !!! | GCTTTTTTGGTGGGGGAGGG+AGG | - | chr1.3:57018888-57018907 | MS.gene43981:intron | 60.0% |
| GGAAATGCTGATGGCCGCGG+TGG | - | chr1.3:57020014-57020033 | MS.gene43981:intron | 65.0% | |
| ! | GGCCGCGGTGGAAGCTCTAG+TGG | - | chr1.3:57020026-57020045 | MS.gene43981:CDS | 70.0% |
| ! | GGTCGTGGCTCGGCTGGCGA+TGG | - | chr1.3:57019963-57019982 | MS.gene43981:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 57018282 | 57020106 | 57018282 | ID=MS.gene43981 |
| chr1.3 | mRNA | 57018282 | 57020106 | 57018282 | ID=MS.gene43981.t1;Parent=MS.gene43981 |
| chr1.3 | exon | 57020026 | 57020106 | 57020026 | ID=MS.gene43981.t1.exon1;Parent=MS.gene43981.t1 |
| chr1.3 | CDS | 57020026 | 57020106 | 57020026 | ID=cds.MS.gene43981.t1;Parent=MS.gene43981.t1 |
| chr1.3 | exon | 57019771 | 57019847 | 57019771 | ID=MS.gene43981.t1.exon2;Parent=MS.gene43981.t1 |
| chr1.3 | CDS | 57019771 | 57019847 | 57019771 | ID=cds.MS.gene43981.t1;Parent=MS.gene43981.t1 |
| chr1.3 | exon | 57019156 | 57019240 | 57019156 | ID=MS.gene43981.t1.exon3;Parent=MS.gene43981.t1 |
| chr1.3 | CDS | 57019156 | 57019240 | 57019156 | ID=cds.MS.gene43981.t1;Parent=MS.gene43981.t1 |
| chr1.3 | exon | 57018282 | 57018677 | 57018282 | ID=MS.gene43981.t1.exon4;Parent=MS.gene43981.t1 |
| chr1.3 | CDS | 57018282 | 57018677 | 57018282 | ID=cds.MS.gene43981.t1;Parent=MS.gene43981.t1 |
| Gene Sequence |
| Protein sequence |
