Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44029.t1 | XP_024638010.1 | 97.6 | 939 | 23 | 0 | 1 | 939 | 1 | 939 | 0.00E+00 | 1891.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44029.t1 | Q9FQ04 | 63.7 | 954 | 305 | 12 | 1 | 928 | 1 | 939 | 0.0e+00 | 1186.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44029.t1 | A0A396JT30 | 97.3 | 941 | 23 | 1 | 1 | 939 | 1 | 941 | 0.0e+00 | 1886.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene44029 | MS.gene48145 | PPI |
| MS.gene24174 | MS.gene44029 | PPI |
| MS.gene80364 | MS.gene44029 | PPI |
| MS.gene03346 | MS.gene44029 | PPI |
| MS.gene57277 | MS.gene44029 | PPI |
| MS.gene27050 | MS.gene44029 | PPI |
| MS.gene44029 | MS.gene64202 | PPI |
| MS.gene44029 | MS.gene03315 | PPI |
| MS.gene46845 | MS.gene44029 | PPI |
| MS.gene019784 | MS.gene44029 | PPI |
| MS.gene64000 | MS.gene44029 | PPI |
| MS.gene85722 | MS.gene44029 | PPI |
| MS.gene39725 | MS.gene44029 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44029.t1 | MTR_7g114570 | 72.037 | 962 | 239 | 11 | 1 | 939 | 1 | 955 | 0.0 | 1360 |
| MS.gene44029.t1 | MTR_7g114570 | 71.206 | 962 | 236 | 12 | 1 | 939 | 1 | 944 | 0.0 | 1337 |
| MS.gene44029.t1 | MTR_4g051920 | 41.176 | 816 | 315 | 13 | 1 | 737 | 1 | 730 | 0.0 | 591 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44029.t1 | AT1G54490 | 63.836 | 954 | 304 | 12 | 1 | 928 | 1 | 939 | 0.0 | 1181 |
| MS.gene44029.t1 | AT1G54490 | 63.122 | 884 | 291 | 11 | 65 | 928 | 13 | 881 | 0.0 | 1076 |
| MS.gene44029.t1 | AT1G75660 | 68.523 | 413 | 123 | 3 | 1 | 406 | 1 | 413 | 0.0 | 556 |
| MS.gene44029.t1 | AT1G75660 | 49.600 | 375 | 165 | 4 | 409 | 761 | 501 | 873 | 1.43e-115 | 379 |
| MS.gene44029.t1 | AT5G42540 | 64.269 | 417 | 134 | 5 | 1 | 406 | 1 | 413 | 4.43e-172 | 528 |
| MS.gene44029.t1 | AT5G42540 | 47.414 | 348 | 164 | 4 | 432 | 760 | 521 | 868 | 6.50e-98 | 331 |
| MS.gene44029.t1 | AT5G42540 | 64.269 | 417 | 134 | 5 | 1 | 406 | 1 | 413 | 5.74e-172 | 527 |
| MS.gene44029.t1 | AT5G42540 | 48.961 | 337 | 164 | 3 | 432 | 760 | 521 | 857 | 9.67e-101 | 338 |
Find 243 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCGTCCTCAGCTTTAGTTTC+TGG | 0.126708 | 1.3:+57581310 | None:intergenic |
| CCATCGAGGCCGCCAATTTC+TGG | 0.148161 | 1.3:-57575486 | MS.gene44029:CDS |
| TCAGCATATGCAAACCTTTC+TGG | 0.150536 | 1.3:+57576439 | None:intergenic |
| TACCCCTGGTACTAAATTTA+TGG | 0.159962 | 1.3:-57582037 | MS.gene44029:CDS |
| AGGTATTATGTTGAAAATTT+TGG | 0.165045 | 1.3:-57579966 | MS.gene44029:CDS |
| AACCTAGCATTTGCGTTAAT+TGG | 0.176869 | 1.3:+57576804 | None:intergenic |
| AAAACCCAGTCTTCACATTT+TGG | 0.192220 | 1.3:+57575544 | None:intergenic |
| GGAACGTTGCTGATTCATTT+TGG | 0.198460 | 1.3:+57582276 | None:intergenic |
| CAAACCATTTGATCAGCTTA+TGG | 0.199225 | 1.3:-57577974 | MS.gene44029:CDS |
| GTGCTTTAGTATTCCACTTT+AGG | 0.206465 | 1.3:+57575406 | None:intergenic |
| CTCATCAATAAATGGCAATT+TGG | 0.206862 | 1.3:+57577550 | None:intergenic |
| CACAAATCGGGGTTCTAAAT+TGG | 0.228452 | 1.3:+57575455 | None:intergenic |
| AGAACACCCTTAACATTAAA+TGG | 0.238490 | 1.3:-57575806 | MS.gene44029:CDS |
| ACTACACCATCCGGAGGTTT+TGG | 0.243525 | 1.3:+57576467 | None:intergenic |
| TGCTTTAGTATTCCACTTTA+GGG | 0.260712 | 1.3:+57575407 | None:intergenic |
| GATATTTCTTCTTGTGAATA+GGG | 0.264564 | 1.3:+57581269 | None:intergenic |
| AATTTCTTCTCATCAATAAA+TGG | 0.269485 | 1.3:+57577542 | None:intergenic |
| ATGCACTGCCTGACAAATAT+AGG | 0.272218 | 1.3:-57577849 | MS.gene44029:CDS |
| TGAATATTTGCAATATGAAT+TGG | 0.308477 | 1.3:-57581133 | MS.gene44029:CDS |
| AGCAACGTTCCCGGCGGTTC+CGG | 0.309948 | 1.3:-57582264 | MS.gene44029:CDS |
| TTGGTTGTTGGTCCAGAAAT+TGG | 0.315729 | 1.3:+57575474 | None:intergenic |
| TATTATTCCATTTAATGTTA+AGG | 0.315998 | 1.3:+57575799 | None:intergenic |
| CTAGGATACATTCCATTTAC+AGG | 0.321321 | 1.3:+57575384 | None:intergenic |
| AATACTAAAGCACCTGTAAA+TGG | 0.324348 | 1.3:-57575396 | MS.gene44029:CDS |
| TCTGGATATGGAAAATATTC+TGG | 0.324999 | 1.3:-57575708 | MS.gene44029:CDS |
| ATTCACAGTTTCTTAACATC+TGG | 0.326588 | 1.3:-57581164 | MS.gene44029:intron |
| CTTTCTGATTCGAATGTTCC+TGG | 0.326687 | 1.3:-57581752 | MS.gene44029:CDS |
| TACCAGAATCTGGAGTTTCT+TGG | 0.327695 | 1.3:+57575283 | None:intergenic |
| GCAACGTTCCCGGCGGTTCC+GGG | 0.327820 | 1.3:-57582263 | MS.gene44029:CDS |
| TGGACCTGTTCTTGATGCCT+TGG | 0.328821 | 1.3:+57575564 | None:intergenic |
| ATTATTCCATTTAATGTTAA+GGG | 0.331340 | 1.3:+57575800 | None:intergenic |
| AATACTCGACATTGTTTGTA+TGG | 0.331774 | 1.3:-57581665 | MS.gene44029:CDS |
| ATTGTACCGTCTCCCATTGA+TGG | 0.332636 | 1.3:-57576639 | MS.gene44029:CDS |
| TGATATTTCTTCTTGTGAAT+AGG | 0.336331 | 1.3:+57581268 | None:intergenic |
| ACCAGAATCTGGAGTTTCTT+GGG | 0.340136 | 1.3:+57575284 | None:intergenic |
| GTATTTCTGTGCTTCTTTGT+CGG | 0.347913 | 1.3:-57581057 | MS.gene44029:CDS |
| GTGGGATGAATGGATATCTT+TGG | 0.350893 | 1.3:-57576689 | MS.gene44029:CDS |
| TGTCAGCCGTGCACATGATT+TGG | 0.352233 | 1.3:-57576892 | MS.gene44029:CDS |
| AAACCATTTGATCAGCTTAT+GGG | 0.353481 | 1.3:-57577973 | MS.gene44029:CDS |
| CAAGTATCTGGAGCAATAAC+TGG | 0.354247 | 1.3:-57575864 | MS.gene44029:CDS |
| CGGTTACAACGTAACATTCC+TGG | 0.354498 | 1.3:-57581698 | MS.gene44029:CDS |
| GCAATAACTGGATCTCAATT+AGG | 0.356190 | 1.3:-57575852 | MS.gene44029:CDS |
| CCCCAAGAAACTCCAGATTC+TGG | 0.357264 | 1.3:-57575285 | MS.gene44029:CDS |
| ACTTGATTACTCTCGATATC+TGG | 0.357455 | 1.3:+57576612 | None:intergenic |
| AACTCAATTCCGTTGGGATT+GGG | 0.365365 | 1.3:+57584762 | None:intergenic |
| TCAGCTGGACCATCTGGATA+TGG | 0.366429 | 1.3:-57575720 | MS.gene44029:CDS |
| TCTGATAGGTCACAAGTATC+TGG | 0.369819 | 1.3:-57575876 | MS.gene44029:intron |
| TACAAACAATGTCGAGTATT+CGG | 0.370547 | 1.3:+57581668 | None:intergenic |
| AGGCGTCAAGAAGCTGCATC+TGG | 0.374781 | 1.3:-57575363 | MS.gene44029:CDS |
| TTCCAATCAGCTGGACCATC+TGG | 0.376364 | 1.3:-57575726 | MS.gene44029:CDS |
| CATGACAATCAGCTGCAAAA+TGG | 0.376562 | 1.3:+57581338 | None:intergenic |
| CACTATTGATTACCAGAATC+TGG | 0.378603 | 1.3:+57575273 | None:intergenic |
| TTTCCTCAGCCTTTCCTCTT+CGG | 0.380180 | 1.3:+57582128 | None:intergenic |
| GAGAACACTAACAGTTATTA+TGG | 0.386258 | 1.3:-57575684 | MS.gene44029:CDS |
| TATTCACAAGAAGAAATATC+AGG | 0.390134 | 1.3:-57581266 | MS.gene44029:intron |
| TGCACTGCCTGACAAATATA+GGG | 0.393425 | 1.3:-57577848 | MS.gene44029:CDS |
| ATCTCTAATGTTGGCATATG+AGG | 0.396928 | 1.3:+57581021 | None:intergenic |
| ATCCAGATGGTCCAGCTGAT+TGG | 0.402539 | 1.3:+57575724 | None:intergenic |
| AAATGAATCAGCAACGTTCC+CGG | 0.404265 | 1.3:-57582273 | MS.gene44029:CDS |
| AATGGTTTGAATGGCTCTCC+AGG | 0.409476 | 1.3:+57577988 | None:intergenic |
| GAACTCAATTCCGTTGGGAT+TGG | 0.413495 | 1.3:+57584761 | None:intergenic |
| ACCCGAGTTCTGCACAAATC+GGG | 0.418494 | 1.3:+57575443 | None:intergenic |
| TCAATCTCAAAAGGAGGGTT+GGG | 0.418825 | 1.3:+57581105 | None:intergenic |
| GTAGTACAAACCTTGCCATC+AGG | 0.423189 | 1.3:+57584690 | None:intergenic |
| TGAGTTCGATAACTTGTACT+TGG | 0.423822 | 1.3:-57584745 | MS.gene44029:CDS |
| CGGGGTTCTAAATTGGTTGT+TGG | 0.424536 | 1.3:+57575462 | None:intergenic |
| GAAACGAGTTCGAGTTCAAC+AGG | 0.427322 | 1.3:-57580445 | MS.gene44029:intron |
| GACCCGAGTTCTGCACAAAT+CGG | 0.429056 | 1.3:+57575442 | None:intergenic |
| ATTAGCAGTGGTGGGATGAA+TGG | 0.431329 | 1.3:-57576699 | MS.gene44029:intron |
| TCAAACCTTCTCCTGTGCTT+TGG | 0.433255 | 1.3:-57576192 | MS.gene44029:CDS |
| AGCTGATCAAATGGTTTGAA+TGG | 0.434925 | 1.3:+57577979 | None:intergenic |
| TGAGGGAGAACATAAAATAA+TGG | 0.435875 | 1.3:-57581729 | MS.gene44029:CDS |
| AAGCTTCTTTACCTTGCAAC+TGG | 0.436653 | 1.3:-57584512 | MS.gene44029:intron |
| GCATGAAGACAATGTTGGTC+GGG | 0.436656 | 1.3:-57576170 | MS.gene44029:CDS |
| CTGTTTGTTGTATGGCGAAC+TGG | 0.437047 | 1.3:+57575750 | None:intergenic |
| CAGCATATGCAAACCTTTCT+GGG | 0.437101 | 1.3:+57576440 | None:intergenic |
| ATTGGAACCTGTTTGTTGTA+TGG | 0.442068 | 1.3:+57575742 | None:intergenic |
| ATACACCGTTATAATAATAC+TGG | 0.443894 | 1.3:+57579038 | None:intergenic |
| ATTTGCCAGTATTATTATAA+CGG | 0.444027 | 1.3:-57579043 | MS.gene44029:CDS |
| CCAGAAATTGGCGGCCTCGA+TGG | 0.445376 | 1.3:+57575486 | None:intergenic |
| CAGGAATGTTACGTTGTAAC+CGG | 0.445921 | 1.3:+57581699 | None:intergenic |
| ACATTTGAGTCTGAAGTCTC+AGG | 0.445971 | 1.3:+57582063 | None:intergenic |
| CTTCATGAACAGCGGCAGAT+TGG | 0.447850 | 1.3:+57580481 | None:intergenic |
| ACGGTGTATGCTCATGGAAA+TGG | 0.448433 | 1.3:-57579024 | MS.gene44029:intron |
| CAGCTGCAAAATGGCCAGCT+TGG | 0.448881 | 1.3:+57581347 | None:intergenic |
| CAGGTCAAGTTAGGGGAGCC+TGG | 0.451540 | 1.3:-57579999 | MS.gene44029:CDS |
| TAGGCCAAGGCATCAAGAAC+AGG | 0.456757 | 1.3:-57575568 | MS.gene44029:CDS |
| TGGGATGAATGGATATCTTT+GGG | 0.458362 | 1.3:-57576688 | MS.gene44029:CDS |
| GCAAAAGGAGCATAATGATA+CGG | 0.458852 | 1.3:+57578054 | None:intergenic |
| ATCAAATCCCTATATTTGTC+AGG | 0.459480 | 1.3:+57577841 | None:intergenic |
| GTCAATCTCAAAAGGAGGGT+TGG | 0.462823 | 1.3:+57581104 | None:intergenic |
| GATTGAACCACAACCCTGCC+TGG | 0.464174 | 1.3:-57581975 | MS.gene44029:CDS |
| TATCCAGTCTCATCTAATGC+TGG | 0.464794 | 1.3:-57575624 | MS.gene44029:CDS |
| AATATGTGGAAGGCCTTTGT+TGG | 0.470088 | 1.3:-57579066 | MS.gene44029:CDS |
| GATATCTGGCAATCCATCAA+TGG | 0.473490 | 1.3:+57576626 | None:intergenic |
| CAGGTCCAAAATGTGAAGAC+TGG | 0.477422 | 1.3:-57575549 | MS.gene44029:CDS |
| AAAACTTCATCATAAGTAGC+TGG | 0.480642 | 1.3:+57584587 | None:intergenic |
| GGACAGGTAATTACTTTACC+TGG | 0.481240 | 1.3:-57581394 | MS.gene44029:intron |
| GCAAGGTAAAGAAGCTTCCT+TGG | 0.481590 | 1.3:+57584518 | None:intergenic |
| TTCACAGTTTCTTAACATCT+GGG | 0.482384 | 1.3:-57581163 | MS.gene44029:intron |
| CGTTCAAAGTCAATCTCAAA+AGG | 0.482551 | 1.3:+57581096 | None:intergenic |
| GTTAGGGGAGCCTGGATACA+AGG | 0.486533 | 1.3:-57579991 | MS.gene44029:CDS |
| CTCCAGTACGTCCCCTAAAG+TGG | 0.486894 | 1.3:-57575419 | MS.gene44029:CDS |
| ATAAAATAATGGAATACATC+CGG | 0.489514 | 1.3:-57581718 | MS.gene44029:CDS |
| TAATACCTTTCCTTGTATCC+AGG | 0.490409 | 1.3:+57579981 | None:intergenic |
| CAGTTCGCCATACAACAAAC+AGG | 0.491248 | 1.3:-57575749 | MS.gene44029:CDS |
| AGTCTCATCTAATGCTGGGC+AGG | 0.491463 | 1.3:-57575619 | MS.gene44029:CDS |
| CTGTAAATGGAATGTATCCT+AGG | 0.492380 | 1.3:-57575383 | MS.gene44029:CDS |
| TTCCACTTTAGGGGACGTAC+TGG | 0.495067 | 1.3:+57575417 | None:intergenic |
| ATAATGAAGAGATGAGAGCT+AGG | 0.496892 | 1.3:-57580301 | MS.gene44029:CDS |
| AGGTTCACTTCTCAATATTG+AGG | 0.500834 | 1.3:-57581505 | MS.gene44029:CDS |
| ATATCTGGCAATCCATCAAT+GGG | 0.500898 | 1.3:+57576627 | None:intergenic |
| TTGGGTTTAGAAGCGTCGAT+AGG | 0.504076 | 1.3:+57584780 | None:intergenic |
| ACCTCTCTGATCTCTAATGT+TGG | 0.505160 | 1.3:+57581012 | None:intergenic |
| TTGGTCGGGGACAGCAAGGA+AGG | 0.505479 | 1.3:-57576156 | MS.gene44029:CDS |
| GGTTCACTTCTCAATATTGA+GGG | 0.508261 | 1.3:-57581504 | MS.gene44029:CDS |
| GAAGCTTGAAGACACATTAA+CGG | 0.510764 | 1.3:-57577504 | MS.gene44029:intron |
| ACCCCGATTTGTGCAGAACT+CGG | 0.512326 | 1.3:-57575445 | MS.gene44029:CDS |
| ACTGATGCATATATATAGAA+AGG | 0.512680 | 1.3:-57580779 | MS.gene44029:CDS |
| GGTGGTTATCTTACTTATGC+GGG | 0.513220 | 1.3:-57580742 | MS.gene44029:CDS |
| CTGAACCTTATCAGAAAATG+AGG | 0.514537 | 1.3:+57580247 | None:intergenic |
| TCGACATTGTTTGTATGGAT+TGG | 0.515703 | 1.3:-57581660 | MS.gene44029:intron |
| TGGGTTTAGAAGCGTCGATA+GGG | 0.517050 | 1.3:+57584781 | None:intergenic |
| GGGATGTGTCCATGTCTACA+AGG | 0.517479 | 1.3:+57576488 | None:intergenic |
| ACAAACAGGTTCCAATCAGC+TGG | 0.518506 | 1.3:-57575735 | MS.gene44029:CDS |
| ATTGGCGGCCTCGATGGTGC+AGG | 0.519830 | 1.3:+57575492 | None:intergenic |
| TTCTTTATCTGCTTATGATG+AGG | 0.520588 | 1.3:+57575333 | None:intergenic |
| GAGATGAGAGCTAGGGCAAG+AGG | 0.521283 | 1.3:-57580293 | MS.gene44029:CDS |
| TGAATAGGGATTTCATCAGC+AGG | 0.521354 | 1.3:+57581283 | None:intergenic |
| GGCGTCAAGAAGCTGCATCT+GGG | 0.521810 | 1.3:-57575362 | MS.gene44029:CDS |
| TTATCGAACTCAATTCCGTT+GGG | 0.522931 | 1.3:+57584756 | None:intergenic |
| TGGAAAACGATTTGCATGGC+AGG | 0.526103 | 1.3:-57577671 | MS.gene44029:intron |
| TTGCCATCAGGGTGAAAACA+AGG | 0.527426 | 1.3:+57584702 | None:intergenic |
| TTATCTTACTTATGCGGGTG+AGG | 0.528053 | 1.3:-57580737 | MS.gene44029:intron |
| TAGAAAGGAATTCACTGCCA+TGG | 0.528597 | 1.3:-57580764 | MS.gene44029:CDS |
| GATTCGAATGTTCCTGGTGA+GGG | 0.530248 | 1.3:-57581746 | MS.gene44029:CDS |
| CTGGGTATCACTACACCATC+CGG | 0.530909 | 1.3:+57576458 | None:intergenic |
| TAATACATCCCACGGAGTGT+TGG | 0.532494 | 1.3:-57575781 | MS.gene44029:CDS |
| GTTATCGAACTCAATTCCGT+TGG | 0.533750 | 1.3:+57584755 | None:intergenic |
| GGAAGAACCTTGAAGCAGGC+AGG | 0.533838 | 1.3:+57577947 | None:intergenic |
| CTCATCTAATGCTGGGCAGG+TGG | 0.534927 | 1.3:-57575616 | MS.gene44029:CDS |
| CAAAAGGAGCATAATGATAC+GGG | 0.536914 | 1.3:+57578055 | None:intergenic |
| ATTATAACGGTGTATGCTCA+TGG | 0.537434 | 1.3:-57579030 | MS.gene44029:CDS |
| TCATGCCAAAGCACAGGAGA+AGG | 0.538530 | 1.3:+57576187 | None:intergenic |
| GATGCAGCTTCTTGACGCCT+AGG | 0.540659 | 1.3:+57575366 | None:intergenic |
| GTTGTTGGTCCAGAAATTGG+CGG | 0.541645 | 1.3:+57575477 | None:intergenic |
| GGCTGCAAAAGATGCAGCTG+AGG | 0.541916 | 1.3:-57582242 | MS.gene44029:CDS |
| AACCATTTGATCAGCTTATG+GGG | 0.542591 | 1.3:-57577972 | MS.gene44029:CDS |
| ATCCAGTCTCATCTAATGCT+GGG | 0.544164 | 1.3:-57575623 | MS.gene44029:CDS |
| GACTCAAATGTCATTACCCC+TGG | 0.547550 | 1.3:-57582051 | MS.gene44029:CDS |
| TCTTTAAGATCAGAAGCAAA+AGG | 0.548870 | 1.3:+57578039 | None:intergenic |
| GGCATGAAGACAATGTTGGT+CGG | 0.549089 | 1.3:-57576171 | MS.gene44029:CDS |
| GGGTGGTTATCTTACTTATG+CGG | 0.549668 | 1.3:-57580743 | MS.gene44029:CDS |
| CACCAATTAACGCAAATGCT+AGG | 0.550066 | 1.3:-57576806 | MS.gene44029:intron |
| CCCCGATTTGTGCAGAACTC+GGG | 0.552399 | 1.3:-57575444 | MS.gene44029:CDS |
| TGATTCGAATGTTCCTGGTG+AGG | 0.556459 | 1.3:-57581747 | MS.gene44029:CDS |
| TAACAATGGAGGAAGGATTG+AGG | 0.557250 | 1.3:-57575515 | MS.gene44029:CDS |
| CCAGAATCTGGAGTTTCTTG+GGG | 0.557442 | 1.3:+57575285 | None:intergenic |
| TACAGGAAGCCGAAGAGGAA+AGG | 0.557457 | 1.3:-57582137 | MS.gene44029:intron |
| ACAAAACACTTATCTTGTCC+AGG | 0.557626 | 1.3:+57581376 | None:intergenic |
| TGCCCAGCATTAGATGAGAC+TGG | 0.557660 | 1.3:+57575621 | None:intergenic |
| AGAAAGGAATTCACTGCCAT+GGG | 0.562929 | 1.3:-57580763 | MS.gene44029:CDS |
| TTAGAACACAAGATAGGCCA+AGG | 0.563818 | 1.3:-57575581 | MS.gene44029:CDS |
| TAGTACAAACCTTGCCATCA+GGG | 0.569197 | 1.3:+57584691 | None:intergenic |
| CGAGTATTCGGATTGAAACC+AGG | 0.572208 | 1.3:+57581680 | None:intergenic |
| ACTACGTCGGAGATCGAGAG+TGG | 0.575023 | 1.3:+57584825 | None:intergenic |
| TGGACACATCCCAAAACCTC+CGG | 0.576106 | 1.3:-57576477 | MS.gene44029:CDS |
| GGGTTTAGAAGCGTCGATAG+GGG | 0.576781 | 1.3:+57584782 | None:intergenic |
| GAGTAATACTTCAAGAGCCA+CGG | 0.576974 | 1.3:-57580271 | MS.gene44029:CDS |
| TAGAGGAAGAACCTTGAAGC+AGG | 0.581158 | 1.3:+57577943 | None:intergenic |
| TTGTCTTCATGCCAAAGCAC+AGG | 0.582226 | 1.3:+57576181 | None:intergenic |
| TCTGCTTTAACAATGGAGGA+AGG | 0.582852 | 1.3:-57575522 | MS.gene44029:CDS |
| TCATCATAAGCAGATAAAGA+AGG | 0.585192 | 1.3:-57575331 | MS.gene44029:CDS |
| AAGCCGAAGAGGAAAGGCTG+AGG | 0.585870 | 1.3:-57582131 | MS.gene44029:CDS |
| CAGAAACTAAAGCTGAGGAC+GGG | 0.587267 | 1.3:-57581309 | MS.gene44029:CDS |
| AGGAAAGAATTCGTCGAGGA+GGG | 0.588221 | 1.3:-57582111 | MS.gene44029:CDS |
| GATTGACTTTGAACGAGTAG+TGG | 0.588362 | 1.3:-57581088 | MS.gene44029:CDS |
| GGGGACAGCAAGGAAGGGAA+AGG | 0.588657 | 1.3:-57576150 | MS.gene44029:intron |
| TCAAAGTCAATCTCAAAAGG+AGG | 0.589615 | 1.3:+57581099 | None:intergenic |
| ATGGTTTGAATGGCTCTCCA+GGG | 0.592631 | 1.3:+57577989 | None:intergenic |
| TAATGAAGAGATGAGAGCTA+GGG | 0.596480 | 1.3:-57580300 | MS.gene44029:CDS |
| CACTTTAGGGGACGTACTGG+AGG | 0.599208 | 1.3:+57575420 | None:intergenic |
| AAATGGAATAATACATCCCA+CGG | 0.600447 | 1.3:-57575789 | MS.gene44029:CDS |
| CCAGAAACTAAAGCTGAGGA+CGG | 0.601449 | 1.3:-57581310 | MS.gene44029:CDS |
| CTTTGGCATGAAGACAATGT+TGG | 0.602709 | 1.3:-57576175 | MS.gene44029:CDS |
| AGAAATTGCTTGCTTCCACA+AGG | 0.603572 | 1.3:-57577526 | MS.gene44029:CDS |
| CATGAAGACAATGTTGGTCG+GGG | 0.605014 | 1.3:-57576169 | MS.gene44029:CDS |
| GAGGTTGCTCCAACACTCCG+TGG | 0.605581 | 1.3:+57575772 | None:intergenic |
| AGTAATACTTCAAGAGCCAC+GGG | 0.606371 | 1.3:-57580270 | MS.gene44029:CDS |
| AGGTCCAAAATGTGAAGACT+GGG | 0.607397 | 1.3:-57575548 | MS.gene44029:CDS |
| TATCTCAATCCTTGTAGACA+TGG | 0.608911 | 1.3:-57576497 | MS.gene44029:CDS |
| TGGTCGGGGACAGCAAGGAA+GGG | 0.610490 | 1.3:-57576155 | MS.gene44029:CDS |
| AATGTTGGTCGGGGACAGCA+AGG | 0.612021 | 1.3:-57576160 | MS.gene44029:CDS |
| TCACTTCTCAATATTGAGGG+AGG | 0.612602 | 1.3:-57581501 | MS.gene44029:intron |
| GGCAATCCATCAATGGGAGA+CGG | 0.612895 | 1.3:+57576633 | None:intergenic |
| AAGCTTCCTTGGACGAACCA+AGG | 0.614170 | 1.3:+57584529 | None:intergenic |
| TGCCATAAATTTAGTACCAG+GGG | 0.616503 | 1.3:+57582035 | None:intergenic |
| CCCGAGTTCTGCACAAATCG+GGG | 0.617800 | 1.3:+57575444 | None:intergenic |
| AGGTTGCTCCAACACTCCGT+GGG | 0.618962 | 1.3:+57575773 | None:intergenic |
| AGTCATACATACCAGTTGCA+AGG | 0.619127 | 1.3:+57584501 | None:intergenic |
| GGTAACGATCGGCGAGCCAG+CGG | 0.619212 | 1.3:+57584847 | None:intergenic |
| GATCGAGAGTGGGTAACGAT+CGG | 0.619774 | 1.3:+57584836 | None:intergenic |
| TGGTGTAGTGATACCCAGAA+AGG | 0.622106 | 1.3:-57576453 | MS.gene44029:intron |
| CAAAGTCAATCTCAAAAGGA+GGG | 0.624467 | 1.3:+57581100 | None:intergenic |
| ATTTATGGCATCTCTGTCAG+TGG | 0.624598 | 1.3:-57582022 | MS.gene44029:CDS |
| AAGGAATTCACTGCCATGGG+TGG | 0.626307 | 1.3:-57580760 | MS.gene44029:CDS |
| GCGTCAAGAAGCTGCATCTG+GGG | 0.630800 | 1.3:-57575361 | MS.gene44029:CDS |
| TGAAACACATCTTTCATGAG+TGG | 0.631778 | 1.3:+57576827 | None:intergenic |
| ATGCCATAAATTTAGTACCA+GGG | 0.633893 | 1.3:+57582034 | None:intergenic |
| AGCATTACAGGAAGCCGAAG+AGG | 0.635386 | 1.3:-57582142 | MS.gene44029:intron |
| TATGTCTAGTCATTGCGCCA+TGG | 0.637403 | 1.3:+57575649 | None:intergenic |
| GCTTTAGTATTCCACTTTAG+GGG | 0.639695 | 1.3:+57575408 | None:intergenic |
| GATGCCATAAATTTAGTACC+AGG | 0.641743 | 1.3:+57582033 | None:intergenic |
| TGCAGGACGAAGAACAGCGT+CGG | 0.642893 | 1.3:-57576941 | MS.gene44029:intron |
| AATACTGGCAAATCCAACAA+AGG | 0.645916 | 1.3:+57579053 | None:intergenic |
| CACATCCCAAAACCTCCGGA+TGG | 0.646836 | 1.3:-57576473 | MS.gene44029:CDS |
| ACCATTTGATCAGCTTATGG+GGG | 0.647585 | 1.3:-57577971 | MS.gene44029:CDS |
| TATTGAGAAGTGAACCTCGT+GGG | 0.648171 | 1.3:+57581511 | None:intergenic |
| TGGTTTGAATGGCTCTCCAG+GGG | 0.653431 | 1.3:+57577990 | None:intergenic |
| AACTTGTACTTGGATATGAA+CGG | 0.654472 | 1.3:-57584735 | MS.gene44029:CDS |
| GAGGAAAGAATTCGTCGAGG+AGG | 0.656944 | 1.3:-57582112 | MS.gene44029:CDS |
| GGGAGCCTGGATACAAGGAA+AGG | 0.657433 | 1.3:-57579986 | MS.gene44029:CDS |
| TGTGTCTTCAAGCTTCCTTG+TGG | 0.659538 | 1.3:+57577511 | None:intergenic |
| GATTTGATCTTCATGAACAG+CGG | 0.659769 | 1.3:+57580473 | None:intergenic |
| ATAAGTAAGATAACCACCCA+TGG | 0.660100 | 1.3:+57580747 | None:intergenic |
| TGCCATCAGGGTGAAAACAA+GGG | 0.672515 | 1.3:+57584703 | None:intergenic |
| TGAATGGAAAACGATTTGCA+TGG | 0.674776 | 1.3:-57577675 | MS.gene44029:CDS |
| TTTGTTGTATGGCGAACTGG+AGG | 0.678143 | 1.3:+57575753 | None:intergenic |
| TAAGCCAGAAACTAAAGCTG+AGG | 0.678336 | 1.3:-57581314 | MS.gene44029:CDS |
| TTATCAGAAAATGAGGCCCG+TGG | 0.682170 | 1.3:+57580254 | None:intergenic |
| GTGAAGCCAAATCATGTGCA+CGG | 0.683896 | 1.3:+57576886 | None:intergenic |
| GACAAGTTATCTCACCAGCA+GGG | 0.693407 | 1.3:+57577785 | None:intergenic |
| TATGGAGAACATAATCACCA+TGG | 0.694386 | 1.3:-57575666 | MS.gene44029:CDS |
| GATTGAGGCCTGCACCATCG+AGG | 0.702437 | 1.3:-57575500 | MS.gene44029:CDS |
| GCTTCTAAACCCAATCCCAA+CGG | 0.705964 | 1.3:-57584771 | MS.gene44029:CDS |
| CTACGTCGGAGATCGAGAGT+GGG | 0.712363 | 1.3:+57584826 | None:intergenic |
| GGTATCACTACACCATCCGG+AGG | 0.715762 | 1.3:+57576461 | None:intergenic |
| TGAATCAGCAACGTTCCCGG+CGG | 0.716241 | 1.3:-57582270 | MS.gene44029:CDS |
| ATATTGAGAAGTGAACCTCG+TGG | 0.763937 | 1.3:+57581510 | None:intergenic |
| GCTCTCTTTAGCTACCCACG+AGG | 0.777239 | 1.3:-57581525 | MS.gene44029:CDS |
| GCTGAGGAAAGAATTCGTCG+AGG | 0.778095 | 1.3:-57582115 | MS.gene44029:CDS |
| TCCGACGTAGTCGAAAACGA+CGG | 0.786049 | 1.3:-57584813 | MS.gene44029:CDS |
| GCCAACATTAGAGATCAGAG+AGG | 0.794461 | 1.3:-57581013 | MS.gene44029:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 57575275 | 57584889 | 57575275 | ID=MS.gene44029 |
| chr1.3 | mRNA | 57575275 | 57584889 | 57575275 | ID=MS.gene44029.t1;Parent=MS.gene44029 |
| chr1.3 | exon | 57584701 | 57584889 | 57584701 | ID=MS.gene44029.t1.exon1;Parent=MS.gene44029.t1 |
| chr1.3 | CDS | 57584701 | 57584889 | 57584701 | ID=cds.MS.gene44029.t1;Parent=MS.gene44029.t1 |
| chr1.3 | exon | 57584513 | 57584615 | 57584513 | ID=MS.gene44029.t1.exon2;Parent=MS.gene44029.t1 |
| chr1.3 | CDS | 57584513 | 57584615 | 57584513 | ID=cds.MS.gene44029.t1;Parent=MS.gene44029.t1 |
| chr1.3 | exon | 57582240 | 57582316 | 57582240 | ID=MS.gene44029.t1.exon3;Parent=MS.gene44029.t1 |
| chr1.3 | CDS | 57582240 | 57582316 | 57582240 | ID=cds.MS.gene44029.t1;Parent=MS.gene44029.t1 |
| chr1.3 | exon | 57581963 | 57582154 | 57581963 | ID=MS.gene44029.t1.exon4;Parent=MS.gene44029.t1 |
| chr1.3 | CDS | 57581963 | 57582154 | 57581963 | ID=cds.MS.gene44029.t1;Parent=MS.gene44029.t1 |
| chr1.3 | exon | 57581661 | 57581780 | 57581661 | ID=MS.gene44029.t1.exon5;Parent=MS.gene44029.t1 |
| chr1.3 | CDS | 57581661 | 57581780 | 57581661 | ID=cds.MS.gene44029.t1;Parent=MS.gene44029.t1 |
| chr1.3 | exon | 57581502 | 57581564 | 57581502 | ID=MS.gene44029.t1.exon6;Parent=MS.gene44029.t1 |
| chr1.3 | CDS | 57581502 | 57581564 | 57581502 | ID=cds.MS.gene44029.t1;Parent=MS.gene44029.t1 |
| chr1.3 | exon | 57581267 | 57581410 | 57581267 | ID=MS.gene44029.t1.exon7;Parent=MS.gene44029.t1 |
| chr1.3 | CDS | 57581267 | 57581410 | 57581267 | ID=cds.MS.gene44029.t1;Parent=MS.gene44029.t1 |
| chr1.3 | exon | 57581014 | 57581178 | 57581014 | ID=MS.gene44029.t1.exon8;Parent=MS.gene44029.t1 |
| chr1.3 | CDS | 57581014 | 57581178 | 57581014 | ID=cds.MS.gene44029.t1;Parent=MS.gene44029.t1 |
| chr1.3 | exon | 57580738 | 57580815 | 57580738 | ID=MS.gene44029.t1.exon9;Parent=MS.gene44029.t1 |
| chr1.3 | CDS | 57580738 | 57580815 | 57580738 | ID=cds.MS.gene44029.t1;Parent=MS.gene44029.t1 |
| chr1.3 | exon | 57580446 | 57580532 | 57580446 | ID=MS.gene44029.t1.exon10;Parent=MS.gene44029.t1 |
| chr1.3 | CDS | 57580446 | 57580532 | 57580446 | ID=cds.MS.gene44029.t1;Parent=MS.gene44029.t1 |
| chr1.3 | exon | 57580253 | 57580333 | 57580253 | ID=MS.gene44029.t1.exon11;Parent=MS.gene44029.t1 |
| chr1.3 | CDS | 57580253 | 57580333 | 57580253 | ID=cds.MS.gene44029.t1;Parent=MS.gene44029.t1 |
| chr1.3 | exon | 57579923 | 57580018 | 57579923 | ID=MS.gene44029.t1.exon12;Parent=MS.gene44029.t1 |
| chr1.3 | CDS | 57579923 | 57580018 | 57579923 | ID=cds.MS.gene44029.t1;Parent=MS.gene44029.t1 |
| chr1.3 | exon | 57579025 | 57579095 | 57579025 | ID=MS.gene44029.t1.exon13;Parent=MS.gene44029.t1 |
| chr1.3 | CDS | 57579025 | 57579095 | 57579025 | ID=cds.MS.gene44029.t1;Parent=MS.gene44029.t1 |
| chr1.3 | exon | 57577955 | 57578083 | 57577955 | ID=MS.gene44029.t1.exon14;Parent=MS.gene44029.t1 |
| chr1.3 | CDS | 57577955 | 57578083 | 57577955 | ID=cds.MS.gene44029.t1;Parent=MS.gene44029.t1 |
| chr1.3 | exon | 57577800 | 57577876 | 57577800 | ID=MS.gene44029.t1.exon15;Parent=MS.gene44029.t1 |
| chr1.3 | CDS | 57577800 | 57577876 | 57577800 | ID=cds.MS.gene44029.t1;Parent=MS.gene44029.t1 |
| chr1.3 | exon | 57577672 | 57577712 | 57577672 | ID=MS.gene44029.t1.exon16;Parent=MS.gene44029.t1 |
| chr1.3 | CDS | 57577672 | 57577712 | 57577672 | ID=cds.MS.gene44029.t1;Parent=MS.gene44029.t1 |
| chr1.3 | exon | 57577505 | 57577579 | 57577505 | ID=MS.gene44029.t1.exon17;Parent=MS.gene44029.t1 |
| chr1.3 | CDS | 57577505 | 57577579 | 57577505 | ID=cds.MS.gene44029.t1;Parent=MS.gene44029.t1 |
| chr1.3 | exon | 57576807 | 57576958 | 57576807 | ID=MS.gene44029.t1.exon18;Parent=MS.gene44029.t1 |
| chr1.3 | CDS | 57576807 | 57576958 | 57576807 | ID=cds.MS.gene44029.t1;Parent=MS.gene44029.t1 |
| chr1.3 | exon | 57576609 | 57576713 | 57576609 | ID=MS.gene44029.t1.exon19;Parent=MS.gene44029.t1 |
| chr1.3 | CDS | 57576609 | 57576713 | 57576609 | ID=cds.MS.gene44029.t1;Parent=MS.gene44029.t1 |
| chr1.3 | exon | 57576454 | 57576529 | 57576454 | ID=MS.gene44029.t1.exon20;Parent=MS.gene44029.t1 |
| chr1.3 | CDS | 57576454 | 57576529 | 57576454 | ID=cds.MS.gene44029.t1;Parent=MS.gene44029.t1 |
| chr1.3 | exon | 57576151 | 57576233 | 57576151 | ID=MS.gene44029.t1.exon21;Parent=MS.gene44029.t1 |
| chr1.3 | CDS | 57576151 | 57576233 | 57576151 | ID=cds.MS.gene44029.t1;Parent=MS.gene44029.t1 |
| chr1.3 | exon | 57575275 | 57575890 | 57575275 | ID=MS.gene44029.t1.exon22;Parent=MS.gene44029.t1 |
| chr1.3 | CDS | 57575275 | 57575890 | 57575275 | ID=cds.MS.gene44029.t1;Parent=MS.gene44029.t1 |
| Gene Sequence |
| Protein sequence |
