Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44214.t1 | XP_003629259.1 | 85.9 | 455 | 45 | 3 | 1 | 437 | 1 | 454 | 5.00E-178 | 634 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44214.t1 | Q94K80 | 32.7 | 367 | 204 | 12 | 46 | 400 | 101 | 436 | 1.3e-17 | 92.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44214.t1 | G7LB62 | 85.9 | 455 | 45 | 3 | 1 | 437 | 1 | 454 | 3.6e-178 | 634.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04995 | MS.gene44214 | 0.809055 | 2.29E-50 | -1.69E-46 |
| MS.gene050750 | MS.gene44214 | -0.821167 | 4.66E-53 | -1.69E-46 |
| MS.gene050953 | MS.gene44214 | -0.818579 | 1.82E-52 | -1.69E-46 |
| MS.gene052309 | MS.gene44214 | 0.814507 | 1.49E-51 | -1.69E-46 |
| MS.gene052358 | MS.gene44214 | 0.85956 | 3.80E-63 | -1.69E-46 |
| MS.gene052361 | MS.gene44214 | 0.802036 | 6.79E-49 | -1.69E-46 |
| MS.gene052965 | MS.gene44214 | 0.814113 | 1.82E-51 | -1.69E-46 |
| MS.gene054405 | MS.gene44214 | -0.820862 | 5.48E-53 | -1.69E-46 |
| MS.gene055784 | MS.gene44214 | 0.805803 | 1.12E-49 | -1.69E-46 |
| MS.gene05954 | MS.gene44214 | -0.819848 | 9.36E-53 | -1.69E-46 |
| MS.gene060572 | MS.gene44214 | -0.817001 | 4.13E-52 | -1.69E-46 |
| MS.gene060634 | MS.gene44214 | 0.80859 | 2.87E-50 | -1.69E-46 |
| MS.gene061040 | MS.gene44214 | 0.859136 | 5.10E-63 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44214.t1 | MTR_8g075120 | 91.209 | 455 | 21 | 3 | 1 | 437 | 1 | 454 | 0.0 | 735 |
| MS.gene44214.t1 | MTR_5g022790 | 42.623 | 488 | 195 | 20 | 4 | 431 | 15 | 477 | 9.04e-90 | 286 |
| MS.gene44214.t1 | MTR_5g022790 | 45.584 | 351 | 130 | 14 | 126 | 431 | 8 | 342 | 2.13e-77 | 246 |
| MS.gene44214.t1 | MTR_5g022790 | 45.584 | 351 | 130 | 14 | 126 | 431 | 8 | 342 | 5.63e-76 | 246 |
| MS.gene44214.t1 | MTR_1g025920 | 38.702 | 416 | 192 | 18 | 17 | 400 | 91 | 475 | 1.95e-48 | 173 |
| MS.gene44214.t1 | MTR_1g025920 | 38.702 | 416 | 192 | 18 | 17 | 400 | 91 | 475 | 3.61e-48 | 173 |
| MS.gene44214.t1 | MTR_3g114450 | 33.596 | 381 | 177 | 17 | 59 | 399 | 88 | 432 | 1.84e-33 | 131 |
| MS.gene44214.t1 | MTR_3g114340 | 34.324 | 370 | 164 | 19 | 69 | 399 | 33 | 362 | 4.59e-30 | 121 |
| MS.gene44214.t1 | MTR_3g114450 | 31.755 | 359 | 169 | 17 | 59 | 377 | 88 | 410 | 3.99e-23 | 101 |
| MS.gene44214.t1 | MTR_5g088200 | 45.652 | 92 | 49 | 1 | 310 | 400 | 290 | 381 | 8.69e-17 | 83.6 |
| MS.gene44214.t1 | MTR_7g117595 | 35.922 | 103 | 64 | 1 | 299 | 399 | 80 | 182 | 1.73e-11 | 66.2 |
| MS.gene44214.t1 | MTR_7g117595 | 35.922 | 103 | 64 | 1 | 299 | 399 | 80 | 182 | 2.07e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44214.t1 | AT4G35890 | 34.794 | 388 | 192 | 16 | 37 | 400 | 86 | 436 | 2.00e-43 | 159 |
| MS.gene44214.t1 | AT4G35890 | 33.699 | 365 | 181 | 16 | 37 | 377 | 86 | 413 | 5.58e-36 | 137 |
| MS.gene44214.t1 | AT5G66100 | 32.918 | 401 | 193 | 18 | 26 | 400 | 52 | 402 | 1.11e-32 | 129 |
| MS.gene44214.t1 | AT5G66100 | 30.341 | 323 | 158 | 17 | 49 | 345 | 66 | 347 | 4.12e-11 | 64.7 |
Find 0 sgRNAs with CRISPR-Local
Find 239 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTACTATTTTTTGATT+TGG | + | 54941:3335-3354 | MS.gene44214:intron | 10.0% |
| !!! | ATTGTAATTTTTTTAAATAG+GGG | - | 54941:3049-3068 | MS.gene44214:intergenic | 10.0% |
| !! | ATAAAATTAGAAAATATGAG+TGG | + | 54941:3416-3435 | MS.gene44214:intron | 15.0% |
| !! | ATTCAATAACAATTTGTATT+AGG | + | 54941:2978-2997 | MS.gene44214:intron | 15.0% |
| !! | CAAAACAATAAAATGAAAAT+TGG | - | 54941:2589-2608 | MS.gene44214:intergenic | 15.0% |
| !! | GATAATATCAATTATAATGT+GGG | + | 54941:3631-3650 | MS.gene44214:intron | 15.0% |
| !! | TCAAAAGATTATTAATACAA+AGG | - | 54941:3300-3319 | MS.gene44214:intergenic | 15.0% |
| !! | TGATAATATCAATTATAATG+TGG | + | 54941:3630-3649 | MS.gene44214:intron | 15.0% |
| !! | TTTAATTAAATCTTTGACAT+GGG | + | 54941:2790-2809 | MS.gene44214:intron | 15.0% |
| !!! | AATCTGTTACTTTTATTTTT+AGG | + | 54941:3889-3908 | MS.gene44214:intron | 15.0% |
| !!! | ATCTGTTACTTTTATTTTTA+GGG | + | 54941:3890-3909 | MS.gene44214:intron | 15.0% |
| !!! | GTATTAATAATCTTTTGATA+TGG | + | 54941:3302-3321 | MS.gene44214:intron | 15.0% |
| !!! | TTGTAATTTTTTTAAATAGG+GGG | - | 54941:3048-3067 | MS.gene44214:intergenic | 15.0% |
| !!! | TTTTAATTAAATCTTTGACA+TGG | + | 54941:2789-2808 | MS.gene44214:intron | 15.0% |
| !!! | TTTTGTCATTTTTTTTCATA+GGG | + | 54941:3223-3242 | MS.gene44214:intron | 15.0% |
| !! | AAAAATATTGCAGAAGATAT+CGG | - | 54941:2482-2501 | MS.gene44214:intergenic | 20.0% |
| !! | AATAAATAAGCAACTAAAGT+GGG | - | 54941:1541-1560 | MS.gene44214:intergenic | 20.0% |
| !! | ATTCAATAAAGTAAGTTGTT+TGG | + | 54941:2748-2767 | MS.gene44214:intron | 20.0% |
| !! | GCATATAACTGAAATATATT+TGG | + | 54941:1651-1670 | MS.gene44214:intron | 20.0% |
| !! | TAATAAATAAGCAACTAAAG+TGG | - | 54941:1542-1561 | MS.gene44214:intergenic | 20.0% |
| !!! | AATATATTTGGAATTGTTAC+TGG | + | 54941:1663-1682 | MS.gene44214:intron | 20.0% |
| !!! | ATTTTTAGGGTGATAAAATA+AGG | + | 54941:3903-3922 | MS.gene44214:intron | 20.0% |
| !!! | CTTTTGTCATTTTTTTTCAT+AGG | + | 54941:3222-3241 | MS.gene44214:intron | 20.0% |
| !!! | GCTCATAATAGAAATTTTAA+CGG | + | 54941:2180-2199 | MS.gene44214:CDS | 20.0% |
| !!! | TTCCTTTATTTATCAAGTTA+GGG | + | 54941:1594-1613 | MS.gene44214:intron | 20.0% |
| !!! | TTTGTCATTTTTTTTCATAG+GGG | + | 54941:3224-3243 | MS.gene44214:intron | 20.0% |
| ! | AAATTAGAAAATATGAGTGG+AGG | + | 54941:3419-3438 | MS.gene44214:intron | 25.0% |
| ! | AACCCTAACTTGATAAATAA+AGG | - | 54941:1599-1618 | MS.gene44214:intergenic | 25.0% |
| ! | AAGTGAAAATCAAAAGGATT+TGG | - | 54941:3527-3546 | MS.gene44214:intergenic | 25.0% |
| ! | AATCCTGCTATTAAATTTAG+AGG | - | 54941:2731-2750 | MS.gene44214:intergenic | 25.0% |
| ! | ATCATATTTCCCTTATGTTA+GGG | + | 54941:3165-3184 | MS.gene44214:intron | 25.0% |
| ! | GATCTGGAAACAAATAAAAA+TGG | + | 54941:4016-4035 | MS.gene44214:CDS | 25.0% |
| ! | GTACTAAATTAGAATGTTTG+TGG | - | 54941:3808-3827 | MS.gene44214:intergenic | 25.0% |
| ! | GTGAAAAAGTGAAAATCAAA+AGG | - | 54941:3533-3552 | MS.gene44214:intergenic | 25.0% |
| ! | TAGAAGAACAATCATAAAAG+AGG | - | 54941:3384-3403 | MS.gene44214:intergenic | 25.0% |
| ! | TGACATAATCAATTTATCGT+TGG | + | 54941:2864-2883 | MS.gene44214:intron | 25.0% |
| !! | GTTCCTTTATTTATCAAGTT+AGG | + | 54941:1593-1612 | MS.gene44214:intron | 25.0% |
| !! | TTAATCAATATCTTTTACCC+TGG | + | 54941:2908-2927 | MS.gene44214:intron | 25.0% |
| !! | TTGTTTGGTGATAATTGATT+TGG | + | 54941:2763-2782 | MS.gene44214:intron | 25.0% |
| !!! | AAAATCGCAACTTTTTGAAA+CGG | - | 54941:3023-3042 | MS.gene44214:intergenic | 25.0% |
| !!! | AATGCATTTTTTTGTCTCTT+AGG | + | 54941:3683-3702 | MS.gene44214:intron | 25.0% |
| !!! | TGTTTTGAGTGTTGATTTTA+GGG | + | 54941:1784-1803 | MS.gene44214:intron | 25.0% |
| !!! | TTCTGTTTTTGTTATGTTTG+TGG | + | 54941:1742-1761 | MS.gene44214:intron | 25.0% |
| !!! | TTGTCATTTTTTTTCATAGG+GGG | + | 54941:3225-3244 | MS.gene44214:intron | 25.0% |
| !!! | TTGTTTTGAGTGTTGATTTT+AGG | + | 54941:1783-1802 | MS.gene44214:intron | 25.0% |
| ACAAATAAAAATGGTGCATC+TGG | + | 54941:4025-4044 | MS.gene44214:CDS | 30.0% | |
| CAACTCATCAGAAAACTTAT+CGG | + | 54941:1881-1900 | MS.gene44214:CDS | 30.0% | |
| GAATATCCAAAACATTGATC+TGG | + | 54941:4000-4019 | MS.gene44214:CDS | 30.0% | |
| GATCATATTTCCCTTATGTT+AGG | + | 54941:3164-3183 | MS.gene44214:intron | 30.0% | |
| GTTCCTCTAAATTTAATAGC+AGG | + | 54941:2725-2744 | MS.gene44214:CDS | 30.0% | |
| TCATATTTCCCTTATGTTAG+GGG | + | 54941:3166-3185 | MS.gene44214:intron | 30.0% | |
| TCGCAACTTCTTAAAACTTA+AGG | + | 54941:3255-3274 | MS.gene44214:intron | 30.0% | |
| TGACAACATTCAGATTGTAT+TGG | + | 54941:3719-3738 | MS.gene44214:CDS | 30.0% | |
| TTAACGGTAGAGACAATTAT+AGG | + | 54941:2196-2215 | MS.gene44214:CDS | 30.0% | |
| TTCAGGTAACGTTTATCTAT+TGG | + | 54941:2557-2576 | MS.gene44214:intron | 30.0% | |
| ! | GTTTCAAAAAGTTGCGATTT+TGG | + | 54941:3022-3041 | MS.gene44214:intron | 30.0% |
| ! | TTGTTTCCAGATCAATGTTT+TGG | - | 54941:4009-4028 | MS.gene44214:intergenic | 30.0% |
| ! | TTTAGGGTGATAAAATAAGG+AGG | + | 54941:3906-3925 | MS.gene44214:intron | 30.0% |
| !!! | AAATCGCAACTTTTTGAAAC+GGG | - | 54941:3022-3041 | MS.gene44214:intergenic | 30.0% |
| !!! | GTTTTAAGAAGTTGCGATTT+TGG | - | 54941:3252-3271 | MS.gene44214:intergenic | 30.0% |
| !!! | TGTCATTTTTTTTCATAGGG+GGG | + | 54941:3226-3245 | MS.gene44214:intron | 30.0% |
| AACAACGATCTTCAAATCCA+GGG | - | 54941:2928-2947 | MS.gene44213:intergenic | 35.0% | |
| AATTCAAACACGTCTTCCAA+TGG | + | 54941:1910-1929 | MS.gene44214:CDS | 35.0% | |
| ACAAACTGTGGAACAAATCT+TGG | - | 54941:2225-2244 | MS.gene44214:intergenic | 35.0% | |
| ACCAGATTGACTACTATTTC+AGG | + | 54941:2540-2559 | MS.gene44214:CDS | 35.0% | |
| ACCTGAAATAGTAGTCAATC+TGG | - | 54941:2544-2563 | MS.gene44214:intergenic | 35.0% | |
| AGAGCATATTTCCCTAAACA+GGG | + | 54941:3195-3214 | MS.gene44214:intron | 35.0% | |
| ATAAAATAAGGAGGCGGAAT+TGG | + | 54941:3915-3934 | MS.gene44214:intron | 35.0% | |
| CAATCATAACTCTGCTCAAA+TGG | + | 54941:1996-2015 | MS.gene44214:CDS | 35.0% | |
| CATATTTCCCTTATGTTAGG+GGG | + | 54941:3167-3186 | MS.gene44214:intron | 35.0% | |
| CTAACGCTTCAAATGATGTA+TGG | + | 54941:2410-2429 | MS.gene44214:CDS | 35.0% | |
| GAAAAAAATACCTGCGATTG+AGG | - | 54941:1517-1536 | MS.gene44214:intergenic | 35.0% | |
| TATCCATATGAGCCCATATA+AGG | - | 54941:2309-2328 | MS.gene44214:intergenic | 35.0% | |
| TCACAGTTTCATAACGTCAA+TGG | + | 54941:3950-3969 | MS.gene44214:intron | 35.0% | |
| TTAGTATGCAACTCAGAATC+CGG | - | 54941:2512-2531 | MS.gene44214:intergenic | 35.0% | |
| TTGAGCAGAGTTATGATTGT+GGG | - | 54941:1995-2014 | MS.gene44214:intergenic | 35.0% | |
| TTTGAGCAGAGTTATGATTG+TGG | - | 54941:1996-2015 | MS.gene44214:intergenic | 35.0% | |
| ! | AAGAGCATATTTCCCTAAAC+AGG | + | 54941:3194-3213 | MS.gene44214:intron | 35.0% |
| ! | CAACTTTTTGCGAAGATAAG+GGG | + | 54941:3135-3154 | MS.gene44214:intron | 35.0% |
| ! | CATACATCATTTGAAGCGTT+AGG | - | 54941:2412-2431 | MS.gene44214:intergenic | 35.0% |
| ! | CGATAAGTTTTCTGATGAGT+TGG | - | 54941:1883-1902 | MS.gene44214:intergenic | 35.0% |
| ! | GATTTGTTCCACAGTTTGTA+AGG | + | 54941:2226-2245 | MS.gene44214:CDS | 35.0% |
| ! | GCAACTTTTTGCGAAGATAA+GGG | + | 54941:3134-3153 | MS.gene44214:intron | 35.0% |
| ! | TAGTATTGGGCATGATTAGT+AGG | - | 54941:2261-2280 | MS.gene44214:intergenic | 35.0% |
| !!! | TGCAATATTTTTTCCACCTC+CGG | + | 54941:2490-2509 | MS.gene44214:CDS | 35.0% |
| AAGAGGAACATGGATGATCA+GGG | + | 54941:2698-2717 | MS.gene44214:CDS | 40.0% | |
| AAGCAAGTTAAGGATACTGC+AGG | + | 54941:1835-1854 | MS.gene44214:CDS | 40.0% | |
| AAGGTCGATAAATCCAAGGA+AGG | - | 54941:1493-1512 | MS.gene44214:intergenic | 40.0% | |
| ACAAAAGTGACCCCTGTTTA+GGG | - | 54941:3209-3228 | MS.gene44214:intergenic | 40.0% | |
| AGGGTGATAAAATAAGGAGG+CGG | + | 54941:3909-3928 | MS.gene44214:intron | 40.0% | |
| ATGGGCTCATATGGATATCA+TGG | + | 54941:2312-2331 | MS.gene44214:CDS | 40.0% | |
| CAACAACGATCTTCAAATCC+AGG | - | 54941:2929-2948 | MS.gene44214:intergenic | 40.0% | |
| CACATACTTGAAGAGGAACA+TGG | + | 54941:2688-2707 | MS.gene44214:CDS | 40.0% | |
| CATATGAGCCCATATAAGGT+GGG | - | 54941:2305-2324 | MS.gene44214:intergenic | 40.0% | |
| GAGCATATTTCCCTAAACAG+GGG | + | 54941:3196-3215 | MS.gene44214:intron | 40.0% | |
| GTCTGCTTCCAGAGTTAAAA+TGG | - | 54941:2128-2147 | MS.gene44214:intergenic | 40.0% | |
| TATTGGGCATGATTAGTAGG+CGG | - | 54941:2258-2277 | MS.gene44214:intergenic | 40.0% | |
| TCACTGCAAAAGACAAGTTG+TGG | - | 54941:2650-2669 | MS.gene44214:intergenic | 40.0% | |
| TTCATCTGTTGTTGAAGTGC+AGG | + | 54941:3755-3774 | MS.gene44214:CDS | 40.0% | |
| ! | CGCAACTTTTTGCGAAGATA+AGG | + | 54941:3133-3152 | MS.gene44214:intron | 40.0% |
| ! | CTTTTGACCCCCTAACATAA+GGG | - | 54941:3177-3196 | MS.gene44214:intergenic | 40.0% |
| ! | GAAGATATCGGTTGCACAAA+CGG | - | 54941:2470-2489 | MS.gene44214:intergenic | 40.0% |
| ! | TCTTTTGACCCCCTAACATA+AGG | - | 54941:3178-3197 | MS.gene44214:intergenic | 40.0% |
| !! | GTATCCTTAACTTGCTTCTG+AGG | - | 54941:1832-1851 | MS.gene44214:intergenic | 40.0% |
| !!! | GAGTGTTGATTTTAGGGTAC+TGG | + | 54941:1790-1809 | MS.gene44214:intron | 40.0% |
| !!! | GGTTCTCACCATTTTAACTC+TGG | + | 54941:2117-2136 | MS.gene44214:CDS | 40.0% |
| !!! | TCAGCAATTTTGGGACGAAA+GGG | - | 54941:3078-3097 | MS.gene44214:intergenic | 40.0% |
| AAATACCTGCGATTGAGGCA+AGG | - | 54941:1512-1531 | MS.gene44213:intergenic | 45.0% | |
| AATTCATCCAGGAACCGGAA+TGG | + | 54941:2069-2088 | MS.gene44214:CDS | 45.0% | |
| AGGCAAGGTCGATAAATCCA+AGG | - | 54941:1497-1516 | MS.gene44214:intergenic | 45.0% | |
| ATGGAACATCTACCAAGAGC+TGG | + | 54941:2015-2034 | MS.gene44214:CDS | 45.0% | |
| CCACCAATCCCACCTTATAT+GGG | + | 54941:2294-2313 | MS.gene44214:CDS | 45.0% | |
| CCACCTTATATGGGCTCATA+TGG | + | 54941:2303-2322 | MS.gene44214:CDS | 45.0% | |
| CCATATGAGCCCATATAAGG+TGG | - | 54941:2306-2325 | MS.gene44214:intergenic | 45.0% | |
| CTCTCCTCAGAAGCAAGTTA+AGG | + | 54941:1825-1844 | MS.gene44214:CDS | 45.0% | |
| GAAGACATCGACAACACTTC+CGG | + | 54941:1319-1338 | MS.gene44214:CDS | 45.0% | |
| GAAGAGGAACATGGATGATC+AGG | + | 54941:2697-2716 | MS.gene44214:CDS | 45.0% | |
| GAAGGTTTCACCAATTCCTG+TGG | - | 54941:1475-1494 | MS.gene44214:intergenic | 45.0% | |
| GACAAAAGTGACCCCTGTTT+AGG | - | 54941:3210-3229 | MS.gene44214:intergenic | 45.0% | |
| GCAACGACACATACTTGAAG+AGG | + | 54941:2681-2700 | MS.gene44214:CDS | 45.0% | |
| GGAATTGGTGAAACCTTCCT+TGG | + | 54941:1477-1496 | MS.gene44214:CDS | 45.0% | |
| TCAAACACGTCTTCCAATGG+AGG | + | 54941:1913-1932 | MS.gene44214:CDS | 45.0% | |
| TCCGGTTCCTGGATGAATTT+CGG | - | 54941:2068-2087 | MS.gene44214:intergenic | 45.0% | |
| TGCACAAACGGTACACTTCT+CGG | - | 54941:2458-2477 | MS.gene44214:intergenic | 45.0% | |
| TTGGAGGGTTTACTCCAAAC+AGG | - | 54941:1355-1374 | MS.gene44214:intergenic | 45.0% | |
| ! | GCGACTATGACCCCTTTTTA+GGG | - | 54941:3116-3135 | MS.gene44214:intergenic | 45.0% |
| ! | GGCGTCTTCTCAGCAATTTT+GGG | - | 54941:3087-3106 | MS.gene44214:intergenic | 45.0% |
| ! | TGCGACTATGACCCCTTTTT+AGG | - | 54941:3117-3136 | MS.gene44214:intergenic | 45.0% |
| ! | TGGCGTCTTCTCAGCAATTT+TGG | - | 54941:3088-3107 | MS.gene44214:intergenic | 45.0% |
| !! | TTGGCGGATTCAGATAAAGC+AGG | - | 54941:1415-1434 | MS.gene44214:intergenic | 45.0% |
| !!! | CAGCAATTTTGGGACGAAAG+GGG | - | 54941:3077-3096 | MS.gene44214:intergenic | 45.0% |
| !!! | CTCAGCAATTTTGGGACGAA+AGG | - | 54941:3079-3098 | MS.gene44214:intergenic | 45.0% |
| !!! | AAATTGTAATTTTTTTAAAT+AGG | - | 54941:3051-3070 | MS.gene44214:intergenic | 5.0% |
| !!! | AATTGTAATTTTTTTAAATA+GGG | - | 54941:3050-3069 | MS.gene44214:intergenic | 5.0% |
| !!! | ATTTAAAAAAATTACAATTT+TGG | + | 54941:3051-3070 | MS.gene44214:intron | 5.0% |
| ACAAACGGTACACTTCTCGG+AGG | - | 54941:2455-2474 | MS.gene44214:intergenic | 50.0% | |
| ACGCCACGTGTCCCTAAAAA+GGG | + | 54941:3102-3121 | MS.gene44214:intron | 50.0% | |
| ATCTGAATCCGCCAAAGCTC+CGG | + | 54941:1420-1439 | MS.gene44214:CDS | 50.0% | |
| CATTCCAGTCCTGATTTCCG+CGG | - | 54941:2161-2180 | MS.gene44214:intergenic | 50.0% | |
| CCAAACAGGTCTCTTACCAC+CGG | - | 54941:1341-1360 | MS.gene44214:intergenic | 50.0% | |
| CCCATATAAGGTGGGATTGG+TGG | - | 54941:2297-2316 | MS.gene44214:intergenic | 50.0% | |
| GAACATGGATGATCAGGGCT+GGG | + | 54941:2703-2722 | MS.gene44214:CDS | 50.0% | |
| GAGCCCATATAAGGTGGGAT+TGG | - | 54941:2300-2319 | MS.gene44214:intergenic | 50.0% | |
| GAGTTATGATTGTGGGACCC+TGG | - | 54941:1988-2007 | MS.gene44214:intergenic | 50.0% | |
| GCCACCAATCCCACCTTATA+TGG | + | 54941:2293-2312 | MS.gene44214:CDS | 50.0% | |
| GCCGAAATTCATCCAGGAAC+CGG | + | 54941:2064-2083 | MS.gene44214:CDS | 50.0% | |
| GGTTTCACCAATTCCTGTGG+TGG | - | 54941:1472-1491 | MS.gene44214:intergenic | 50.0% | |
| GTATGCAACTCAGAATCCGG+AGG | - | 54941:2509-2528 | MS.gene44214:intergenic | 50.0% | |
| GTATGGTCCACCTTTGCATG+TGG | + | 54941:2427-2446 | MS.gene44214:CDS | 50.0% | |
| TATGATTGTGGGACCCTGGT+GGG | - | 54941:1984-2003 | MS.gene44214:intergenic | 50.0% | |
| TGACGGCGATGAATGAGGTA+CGG | - | 54941:1245-1264 | MS.gene44214:intergenic | 50.0% | |
| TTATGATTGTGGGACCCTGG+TGG | - | 54941:1985-2004 | MS.gene44214:intergenic | 50.0% | |
| TTGGGCACAAATCCAGCTCT+TGG | - | 54941:2030-2049 | MS.gene44214:intergenic | 50.0% | |
| ! | AACAATCTGGCTCCAAGGTG+CGG | - | 54941:1203-1222 | MS.gene44214:intergenic | 50.0% |
| ! | ACCAATTCCTGTGGTGGTGA+TGG | - | 54941:1466-1485 | MS.gene44214:intergenic | 50.0% |
| ! | CTCCAATGCTGCTGCTTCTT+CGG | + | 54941:1369-1388 | MS.gene44214:CDS | 50.0% |
| ! | GAAGAAGCAGCAGCATTGGA+GGG | - | 54941:1370-1389 | MS.gene44214:intergenic | 50.0% |
| !! | AATTCCTGTGGTGGTGATGG+CGG | - | 54941:1463-1482 | MS.gene44214:intergenic | 50.0% |
| ATCGACCTTGCCTCAATCGC+AGG | + | 54941:1504-1523 | MS.gene44214:CDS | 55.0% | |
| CCACAAATGTCTGCGCCTCA+AGG | + | 54941:1946-1965 | MS.gene44214:CDS | 55.0% | |
| CCGGTGGTAAGAGACCTGTT+TGG | + | 54941:1338-1357 | MS.gene44214:CDS | 55.0% | |
| CCTTGAGGCGCAGACATTTG+TGG | - | 54941:1949-1968 | MS.gene44214:intergenic | 55.0% | |
| CGCCACGTGTCCCTAAAAAG+GGG | + | 54941:3103-3122 | MS.gene44214:intron | 55.0% | |
| CTGGATGAATTTCGGCGCTG+AGG | - | 54941:2060-2079 | MS.gene44214:intergenic | 55.0% | |
| GACATCGACAACACTTCCGG+TGG | + | 54941:1322-1341 | MS.gene44214:CDS | 55.0% | |
| GACCGAAGAAGCAGCAGCAT+TGG | - | 54941:1374-1393 | MS.gene44214:intergenic | 55.0% | |
| GACGCCACGTGTCCCTAAAA+AGG | + | 54941:3101-3120 | MS.gene44214:intron | 55.0% | |
| GCATGATTAGTAGGCGGTGG+AGG | - | 54941:2252-2271 | MS.gene44214:intergenic | 55.0% | |
| GCCATCACCACCACAGGAAT+TGG | + | 54941:1462-1481 | MS.gene44214:CDS | 55.0% | |
| GGAACATGGATGATCAGGGC+TGG | + | 54941:2702-2721 | MS.gene44214:CDS | 55.0% | |
| GGGACAGCAACGAAACCTTG+AGG | - | 54941:1964-1983 | MS.gene44214:intergenic | 55.0% | |
| GGTGGAGGCCTTACAAACTG+TGG | - | 54941:2237-2256 | MS.gene44214:intergenic | 55.0% | |
| GTTGTAGACCACCGCCATTC+CGG | - | 54941:2086-2105 | MS.gene44214:intergenic | 55.0% | |
| GTTTCGTTGCTGTCCCACCA+GGG | + | 54941:1968-1987 | MS.gene44214:CDS | 55.0% | |
| TCATCCAGGAACCGGAATGG+CGG | + | 54941:2072-2091 | MS.gene44214:CDS | 55.0% | |
| TGAGGCGCAGACATTTGTGG+CGG | - | 54941:1946-1965 | MS.gene44214:intergenic | 55.0% | |
| TGATCAGGACCGCGGAAATC+AGG | + | 54941:2149-2168 | MS.gene44214:CDS | 55.0% | |
| TGCAACTCAGAATCCGGAGG+TGG | - | 54941:2506-2525 | MS.gene44214:intergenic | 55.0% | |
| TGGGCATGATTAGTAGGCGG+TGG | - | 54941:2255-2274 | MS.gene44214:intergenic | 55.0% | |
| ! | CAGTGGCGGGGGATAGTATT+GGG | - | 54941:2274-2293 | MS.gene44214:intergenic | 55.0% |
| ! | CGAAGAAGCAGCAGCATTGG+AGG | - | 54941:1371-1390 | MS.gene44214:intergenic | 55.0% |
| ! | CTCAGCGCCGAAATTCATCC+AGG | + | 54941:2058-2077 | MS.gene44214:CDS | 55.0% |
| ! | CTCTGGAAGCAGACGTGATC+AGG | + | 54941:2134-2153 | MS.gene44214:CDS | 55.0% |
| ! | GAGGCAACAATCTGGCTCCA+AGG | - | 54941:1208-1227 | MS.gene44214:intergenic | 55.0% |
| ! | TAAGGTGGGATTGGTGGCAG+TGG | - | 54941:2291-2310 | MS.gene44214:intergenic | 55.0% |
| ! | TGCTGCTGCTTCTTCGGTCA+TGG | + | 54941:1375-1394 | MS.gene44214:CDS | 55.0% |
| !! | CGGTCATGGATGCTGACTCA+TGG | + | 54941:1389-1408 | MS.gene44214:CDS | 55.0% |
| !! | GACCCCTTTTTAGGGACACG+TGG | - | 54941:3108-3127 | MS.gene44214:intergenic | 55.0% |
| AGCAGACGTGATCAGGACCG+CGG | + | 54941:2141-2160 | MS.gene44214:CDS | 60.0% | |
| AGGACCGCGGAAATCAGGAC+TGG | + | 54941:2154-2173 | MS.gene44214:CDS | 60.0% | |
| ATGAGGTACGGCGGAAGCAG+CGG | - | 54941:1233-1252 | MS.gene44214:intergenic | 60.0% | |
| CACTTTCGCCGTCACTGAGG+CGG | + | 54941:1294-1313 | MS.gene44214:CDS | 60.0% | |
| CAGACATTTGTGGCGGCTGG+CGG | - | 54941:1939-1958 | MS.gene44214:intergenic | 60.0% | |
| CAGCGGTGGAGGCAACAATC+TGG | - | 54941:1216-1235 | MS.gene44214:intergenic | 60.0% | |
| CGACACTTTCGCCGTCACTG+AGG | + | 54941:1291-1310 | MS.gene44214:CDS | 60.0% | |
| CGGCGATGAATGAGGTACGG+CGG | - | 54941:1242-1261 | MS.gene44214:intergenic | 60.0% | |
| CTCGGAGGCTCCACATGCAA+AGG | - | 54941:2440-2459 | MS.gene44214:intergenic | 60.0% | |
| GAGGAAGGAGGAGGAGGTGA+CGG | - | 54941:1262-1281 | MS.gene44214:intergenic | 60.0% | |
| GGAGGCTCCACATGCAAAGG+TGG | - | 54941:2437-2456 | MS.gene44214:intergenic | 60.0% | |
| GGTCTACAACCACGCGGAGA+TGG | + | 54941:2096-2115 | MS.gene44214:CDS | 60.0% | |
| GGTTTCGTTGCTGTCCCACC+AGG | + | 54941:1967-1986 | MS.gene44214:CDS | 60.0% | |
| TGGCGATTTCGCCGGAGCTT+TGG | - | 54941:1434-1453 | MS.gene44214:intergenic | 60.0% | |
| TGGTGAGAACCATCTCCGCG+TGG | - | 54941:2108-2127 | MS.gene44214:intergenic | 60.0% | |
| ! | AATCTGGCTCCAAGGTGCGG+CGG | - | 54941:1200-1219 | MS.gene44214:intergenic | 60.0% |
| ! | CGATTTCGCCGGAGCTTTGG+CGG | - | 54941:1431-1450 | MS.gene44214:intergenic | 60.0% |
| ! | CGGCGCTGAGGCTGATCATT+GGG | - | 54941:2048-2067 | MS.gene44214:intergenic | 60.0% |
| ! | GCAGTGGCGGGGGATAGTAT+TGG | - | 54941:2275-2294 | MS.gene44214:intergenic | 60.0% |
| ! | GGAGGTGACGGCGATGAATG+AGG | - | 54941:1250-1269 | MS.gene44214:intergenic | 60.0% |
| ! | TCGGCGCTGAGGCTGATCAT+TGG | - | 54941:2049-2068 | MS.gene44214:intergenic | 60.0% |
| !! | GACGGCGAAAGTGTCGACAG+CGG | - | 54941:1287-1306 | MS.gene44214:intergenic | 60.0% |
| ACCACCGCCATCACCACCAC+AGG | + | 54941:1456-1475 | MS.gene44214:CDS | 65.0% | |
| ACCACCGCCATTCCGGTTCC+TGG | - | 54941:2079-2098 | MS.gene44214:intergenic | 65.0% | |
| GCGCAGACATTTGTGGCGGC+TGG | - | 54941:1942-1961 | MS.gene44214:intergenic | 65.0% | |
| GGCGGTGGTCTACAACCACG+CGG | + | 54941:2090-2109 | MS.gene44214:CDS | 65.0% | |
| GTCTTCCGCCGCCTCAGTGA+CGG | - | 54941:1305-1324 | MS.gene44214:intergenic | 65.0% | |
| TCCAGGAACCGGAATGGCGG+TGG | + | 54941:2075-2094 | MS.gene44214:CDS | 65.0% | |
| TTTCGCCGTCACTGAGGCGG+CGG | + | 54941:1297-1316 | MS.gene44214:CDS | 65.0% | |
| ! | GGTGGGATTGGTGGCAGTGG+CGG | - | 54941:2288-2307 | MS.gene44214:intergenic | 65.0% |
| ! | GTGGGATTGGTGGCAGTGGC+GGG | - | 54941:2287-2306 | MS.gene44214:intergenic | 65.0% |
| ! | TGGGATTGGTGGCAGTGGCG+GGG | - | 54941:2286-2305 | MS.gene44214:intergenic | 65.0% |
| !! | GAAAGTGTCGACAGCGGCGG+AGG | - | 54941:1281-1300 | MS.gene44214:intergenic | 65.0% |
| !! | GGCGAAAGTGTCGACAGCGG+CGG | - | 54941:1284-1303 | MS.gene44214:intergenic | 65.0% |
| !! | GGCGGGAGAGGAAGCGTTCA+TGG | - | 54941:1179-1198 | MS.gene44214:intergenic | 65.0% |
| !! | GGTGGTGGTGGCGATTTCGC+CGG | - | 54941:1442-1461 | MS.gene44214:intergenic | 65.0% |
| !! | TCCTGTGGTGGTGATGGCGG+TGG | - | 54941:1460-1479 | MS.gene44214:intergenic | 65.0% |
| !! | TGTGGTGGTGATGGCGGTGG+TGG | - | 54941:1457-1476 | MS.gene44214:intergenic | 65.0% |
| ACAGCGGCGGAGGAAGGAGG+AGG | - | 54941:1271-1290 | MS.gene44214:intergenic | 70.0% | |
| AGGTACGGCGGAAGCAGCGG+TGG | - | 54941:1230-1249 | MS.gene44214:intergenic | 70.0% | |
| TACGGCGGAAGCAGCGGTGG+AGG | - | 54941:1227-1246 | MS.gene44214:intergenic | 70.0% | |
| TCGACAGCGGCGGAGGAAGG+AGG | - | 54941:1274-1293 | MS.gene44214:intergenic | 70.0% | |
| ! | GGGATTGGTGGCAGTGGCGG+GGG | - | 54941:2285-2304 | MS.gene44214:intergenic | 70.0% |
| ! | GTGTCGACAGCGGCGGAGGA+AGG | - | 54941:1277-1296 | MS.gene44214:intergenic | 70.0% |
| !! | GGTGGTGATGGCGGTGGTGG+TGG | - | 54941:1454-1473 | MS.gene44214:intergenic | 70.0% |
| CTGGCTCCAAGGTGCGGCGG+CGG | - | 54941:1197-1216 | MS.gene44214:intergenic | 75.0% | |
| GCGGCGGAGGAAGGAGGAGG+AGG | - | 54941:1268-1287 | MS.gene44214:intergenic | 75.0% | |
| TGGCGGCTGGCGGCCTCCAT+TGG | - | 54941:1929-1948 | MS.gene44214:intergenic | 75.0% | |
| TGGCTCCAAGGTGCGGCGGC+GGG | - | 54941:1196-1215 | MS.gene44214:intergenic | 75.0% | |
| ! | CCAAGGTGCGGCGGCGGGAG+AGG | - | 54941:1191-1210 | MS.gene44214:intergenic | 80.0% |
| ! | CCTCTCCCGCCGCCGCACCT+TGG | + | 54941:1188-1207 | MS.gene44214:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 54941 | gene | 1172 | 4067 | 1172 | ID=MS.gene44214 |
| 54941 | mRNA | 1172 | 4067 | 1172 | ID=MS.gene44214.t1;Parent=MS.gene44214 |
| 54941 | exon | 1172 | 1525 | 1172 | ID=MS.gene44214.t1.exon1;Parent=MS.gene44214.t1 |
| 54941 | CDS | 1172 | 1525 | 1172 | ID=cds.MS.gene44214.t1;Parent=MS.gene44214.t1 |
| 54941 | exon | 1805 | 2333 | 1805 | ID=MS.gene44214.t1.exon2;Parent=MS.gene44214.t1 |
| 54941 | CDS | 1805 | 2333 | 1805 | ID=cds.MS.gene44214.t1;Parent=MS.gene44214.t1 |
| 54941 | exon | 2408 | 2561 | 2408 | ID=MS.gene44214.t1.exon3;Parent=MS.gene44214.t1 |
| 54941 | CDS | 2408 | 2561 | 2408 | ID=cds.MS.gene44214.t1;Parent=MS.gene44214.t1 |
| 54941 | exon | 2667 | 2757 | 2667 | ID=MS.gene44214.t1.exon4;Parent=MS.gene44214.t1 |
| 54941 | CDS | 2667 | 2757 | 2667 | ID=cds.MS.gene44214.t1;Parent=MS.gene44214.t1 |
| 54941 | exon | 3705 | 3776 | 3705 | ID=MS.gene44214.t1.exon5;Parent=MS.gene44214.t1 |
| 54941 | CDS | 3705 | 3776 | 3705 | ID=cds.MS.gene44214.t1;Parent=MS.gene44214.t1 |
| 54941 | exon | 3956 | 4067 | 3956 | ID=MS.gene44214.t1.exon6;Parent=MS.gene44214.t1 |
| 54941 | CDS | 3956 | 4067 | 3956 | ID=cds.MS.gene44214.t1;Parent=MS.gene44214.t1 |
| Gene Sequence |
| Protein sequence |
