Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44271.t1 | XP_003613088.1 | 96.8 | 347 | 10 | 1 | 1 | 347 | 1 | 346 | 5.80E-185 | 656.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44271.t1 | Q8LGA1 | 48.8 | 324 | 134 | 9 | 1 | 317 | 1 | 299 | 2.5e-72 | 273.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44271.t1 | G7JXR1 | 96.8 | 347 | 10 | 1 | 1 | 347 | 1 | 346 | 4.2e-185 | 656.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene44271 | MS.gene71698 | PPI |
| MS.gene029005 | MS.gene44271 | PPI |
| MS.gene029573 | MS.gene44271 | PPI |
| MS.gene44271 | MS.gene065674 | PPI |
| MS.gene44271 | MS.gene043340 | PPI |
| MS.gene35752 | MS.gene44271 | PPI |
| MS.gene31553 | MS.gene44271 | PPI |
| MS.gene92988 | MS.gene44271 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44271.t1 | MTR_5g032550 | 96.830 | 347 | 10 | 1 | 1 | 347 | 1 | 346 | 0.0 | 681 |
| MS.gene44271.t1 | MTR_5g032550 | 96.703 | 273 | 8 | 1 | 1 | 273 | 1 | 272 | 0.0 | 533 |
| MS.gene44271.t1 | MTR_8g068950 | 43.750 | 368 | 176 | 9 | 1 | 339 | 1 | 366 | 1.08e-93 | 284 |
| MS.gene44271.t1 | MTR_3g100710 | 50.693 | 361 | 149 | 12 | 1 | 339 | 1 | 354 | 6.99e-90 | 274 |
| MS.gene44271.t1 | MTR_4g080990 | 44.220 | 346 | 174 | 9 | 1 | 339 | 1 | 334 | 3.49e-84 | 258 |
| MS.gene44271.t1 | MTR_5g065830 | 46.075 | 293 | 143 | 6 | 59 | 337 | 54 | 345 | 1.46e-77 | 242 |
| MS.gene44271.t1 | MTR_3g100710 | 46.260 | 361 | 136 | 14 | 1 | 339 | 1 | 325 | 2.53e-68 | 218 |
| MS.gene44271.t1 | MTR_8g063120 | 40.741 | 243 | 136 | 3 | 55 | 293 | 56 | 294 | 2.87e-51 | 174 |
| MS.gene44271.t1 | MTR_8g063120 | 44.920 | 187 | 103 | 0 | 55 | 241 | 56 | 242 | 9.28e-51 | 171 |
| MS.gene44271.t1 | MTR_1g107535 | 37.023 | 262 | 157 | 2 | 93 | 346 | 107 | 368 | 3.39e-48 | 167 |
| MS.gene44271.t1 | MTR_5g035360 | 38.428 | 229 | 137 | 2 | 60 | 284 | 44 | 272 | 1.03e-44 | 156 |
| MS.gene44271.t1 | MTR_4g094942 | 33.562 | 292 | 176 | 7 | 58 | 337 | 51 | 336 | 4.97e-44 | 155 |
| MS.gene44271.t1 | MTR_3g102310 | 34.932 | 292 | 169 | 8 | 60 | 337 | 56 | 340 | 1.52e-43 | 154 |
| MS.gene44271.t1 | MTR_2g089490 | 33.333 | 267 | 154 | 8 | 70 | 322 | 28 | 284 | 1.20e-35 | 131 |
| MS.gene44271.t1 | MTR_2g089490 | 32.576 | 264 | 157 | 7 | 70 | 322 | 28 | 281 | 2.20e-33 | 125 |
| MS.gene44271.t1 | MTR_2g011500 | 29.730 | 259 | 161 | 6 | 55 | 307 | 55 | 298 | 6.56e-33 | 124 |
| MS.gene44271.t1 | MTR_5g015670 | 34.343 | 198 | 121 | 4 | 91 | 283 | 101 | 294 | 1.87e-31 | 121 |
| MS.gene44271.t1 | MTR_3g103080 | 46.218 | 119 | 63 | 1 | 93 | 211 | 67 | 184 | 1.50e-25 | 105 |
| MS.gene44271.t1 | MTR_4g095790 | 29.808 | 208 | 128 | 6 | 91 | 285 | 66 | 268 | 3.46e-19 | 87.4 |
| MS.gene44271.t1 | MTR_3g088415 | 28.455 | 246 | 146 | 9 | 4 | 238 | 185 | 411 | 1.85e-12 | 68.6 |
| MS.gene44271.t1 | MTR_3g088415 | 28.455 | 246 | 146 | 9 | 4 | 238 | 185 | 411 | 2.55e-12 | 68.2 |
| MS.gene44271.t1 | MTR_3g088415 | 29.245 | 212 | 126 | 7 | 4 | 205 | 185 | 382 | 2.34e-11 | 64.7 |
| MS.gene44271.t1 | MTR_3g060770 | 31.579 | 114 | 77 | 1 | 88 | 201 | 56 | 168 | 2.74e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44271.t1 | AT5G65420 | 48.765 | 324 | 134 | 9 | 1 | 317 | 1 | 299 | 3.63e-93 | 280 |
| MS.gene44271.t1 | AT5G65420 | 47.305 | 334 | 134 | 10 | 1 | 317 | 1 | 309 | 7.31e-90 | 272 |
| MS.gene44271.t1 | AT5G65420 | 54.150 | 253 | 98 | 5 | 1 | 251 | 1 | 237 | 1.17e-88 | 268 |
| MS.gene44271.t1 | AT5G10440 | 57.826 | 230 | 91 | 3 | 55 | 281 | 31 | 257 | 9.58e-87 | 263 |
| MS.gene44271.t1 | AT2G22490 | 46.178 | 314 | 147 | 5 | 30 | 323 | 26 | 337 | 1.62e-80 | 250 |
| MS.gene44271.t1 | AT2G22490 | 45.714 | 315 | 148 | 6 | 30 | 323 | 26 | 338 | 6.09e-79 | 246 |
| MS.gene44271.t1 | AT5G65420 | 52.137 | 234 | 94 | 5 | 1 | 232 | 1 | 218 | 2.55e-77 | 238 |
| MS.gene44271.t1 | AT5G10440 | 59.777 | 179 | 71 | 1 | 55 | 232 | 31 | 209 | 1.77e-73 | 227 |
| MS.gene44271.t1 | AT1G70210 | 40.948 | 232 | 127 | 3 | 63 | 286 | 52 | 281 | 6.13e-53 | 178 |
| MS.gene44271.t1 | AT3G50070 | 41.475 | 217 | 122 | 2 | 93 | 305 | 86 | 301 | 6.39e-48 | 166 |
| MS.gene44271.t1 | AT5G67260 | 39.189 | 222 | 129 | 2 | 90 | 307 | 93 | 312 | 3.60e-46 | 161 |
| MS.gene44271.t1 | AT5G67260 | 39.189 | 222 | 129 | 2 | 90 | 307 | 93 | 312 | 2.05e-45 | 160 |
| MS.gene44271.t1 | AT4G34160 | 38.614 | 202 | 120 | 1 | 93 | 290 | 87 | 288 | 3.84e-43 | 153 |
| MS.gene44271.t1 | AT4G03270 | 33.333 | 273 | 161 | 11 | 70 | 330 | 35 | 298 | 7.10e-29 | 113 |
| MS.gene44271.t1 | AT4G03270 | 33.333 | 273 | 160 | 12 | 70 | 330 | 35 | 297 | 4.93e-27 | 108 |
| MS.gene44271.t1 | AT4G37630 | 39.474 | 152 | 89 | 3 | 96 | 245 | 75 | 225 | 1.03e-26 | 107 |
| MS.gene44271.t1 | AT4G37630 | 39.623 | 159 | 91 | 4 | 91 | 245 | 70 | 227 | 3.57e-26 | 105 |
| MS.gene44271.t1 | AT4G37630 | 39.610 | 154 | 88 | 4 | 96 | 245 | 75 | 227 | 1.15e-25 | 105 |
| MS.gene44271.t1 | AT5G02110 | 25.328 | 229 | 164 | 4 | 57 | 283 | 42 | 265 | 1.46e-15 | 77.0 |
| MS.gene44271.t1 | AT5G02110 | 28.947 | 152 | 101 | 4 | 134 | 283 | 90 | 236 | 7.24e-13 | 68.9 |
| MS.gene44271.t1 | AT3G11520 | 31.746 | 126 | 82 | 2 | 87 | 212 | 185 | 306 | 2.13e-11 | 65.1 |
| MS.gene44271.t1 | AT3G11520 | 31.746 | 126 | 82 | 2 | 87 | 212 | 185 | 306 | 2.69e-11 | 64.7 |
Find 71 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGACTACTATTTGAAGAATT+TGG | 0.142214 | 5.4:-22790758 | None:intergenic |
| CATTGCAGGTATTGACTTCT+TGG | 0.185519 | 5.4:+22790243 | MS.gene44271:intron |
| CAACAGGCTCATGCTTATTA+TGG | 0.202944 | 5.4:+22789551 | MS.gene44271:intron |
| CTTCTCACTTGCAGCTAAAA+TGG | 0.203094 | 5.4:+22789790 | MS.gene44271:CDS |
| TTTGATGATGTTGTTGTTGA+TGG | 0.218914 | 5.4:+22788899 | MS.gene44271:CDS |
| AGCGGTGGCCATTTCTTTAA+AGG | 0.230204 | 5.4:+22790291 | MS.gene44271:CDS |
| GTATTGACTTCTTGGAATTC+AGG | 0.261158 | 5.4:+22790251 | MS.gene44271:CDS |
| GCTCATGCTTATTATGGATT+TGG | 0.271798 | 5.4:+22789557 | MS.gene44271:CDS |
| GAGAGGCTCTTGATTGGATT+TGG | 0.272878 | 5.4:+22789113 | MS.gene44271:CDS |
| GCCTCAATCTGTAGATTTAC+AGG | 0.274886 | 5.4:+22789826 | MS.gene44271:CDS |
| GATGTTGTTGTTGATGGTTC+TGG | 0.287901 | 5.4:+22788905 | MS.gene44271:CDS |
| GTTCTGGAATCTCACCTTCT+TGG | 0.314559 | 5.4:+22788921 | MS.gene44271:CDS |
| TTCTGGAATCTCACCTTCTT+GGG | 0.334756 | 5.4:+22788922 | MS.gene44271:CDS |
| CTAATGATATTAAGCTCATT+AGG | 0.351519 | 5.4:+22789993 | MS.gene44271:CDS |
| AAGATTGCGTAGTGGTGATT+TGG | 0.353471 | 5.4:+22789075 | MS.gene44271:CDS |
| TTGTACCTCAAAGCCCTATA+GGG | 0.359864 | 5.4:+22790678 | MS.gene44271:CDS |
| ATAGTAGTCCAAATGCTAAA+AGG | 0.376678 | 5.4:+22790771 | MS.gene44271:CDS |
| CTGCATCAAGCACCCCTATA+GGG | 0.377105 | 5.4:-22790691 | None:intergenic |
| CCTGCATCAAGCACCCCTAT+AGG | 0.378400 | 5.4:-22790692 | None:intergenic |
| TGATTTCTTCATTGTAGATA+AGG | 0.415109 | 5.4:+22790348 | MS.gene44271:CDS |
| CATTGTGAAGTTCCACTTGA+AGG | 0.419205 | 5.4:-22790809 | None:intergenic |
| CCTATAGGGGTGCTTGATGC+AGG | 0.419427 | 5.4:+22790692 | MS.gene44271:CDS |
| TTGCCTATCTGTGAACTACT+TGG | 0.419531 | 5.4:+22789592 | MS.gene44271:CDS |
| TTTGTACCTCAAAGCCCTAT+AGG | 0.422461 | 5.4:+22790677 | MS.gene44271:CDS |
| GCCTTATCAACTTCTTGTGC+TGG | 0.423850 | 5.4:-22790319 | None:intergenic |
| TTAGAAGAGAGGCTCTTGAT+TGG | 0.426958 | 5.4:+22789107 | MS.gene44271:CDS |
| TGGCAGTTCCTTTAAAGAAA+TGG | 0.427409 | 5.4:-22790299 | None:intergenic |
| AAGAGTGATGAATTAACAAA+TGG | 0.427900 | 5.4:+22790728 | MS.gene44271:CDS |
| GCTAAAAGGATCAAATTTGA+TGG | 0.428970 | 5.4:+22790785 | MS.gene44271:CDS |
| AAGAGATCTTTCCTTGATCA+AGG | 0.429000 | 5.4:+22790631 | MS.gene44271:CDS |
| GTATACCCTTGATTATGTTA+AGG | 0.453130 | 5.4:-22790127 | None:intergenic |
| TGAGGAAATTGTGAAGGTTA+TGG | 0.456594 | 5.4:+22789009 | MS.gene44271:CDS |
| ATTGCCACCAACCTTGATCA+AGG | 0.465173 | 5.4:-22790642 | None:intergenic |
| TACAATGAAGAAATCAGTTA+TGG | 0.468668 | 5.4:-22790341 | None:intergenic |
| AGCTAAAACAATTCAGAGAA+TGG | 0.472457 | 5.4:+22789968 | MS.gene44271:CDS |
| GCTCATCCTTAACATAATCA+AGG | 0.474269 | 5.4:+22790121 | MS.gene44271:CDS |
| GGACCACACAAATGTTAACT+TGG | 0.481111 | 5.4:+22788943 | MS.gene44271:CDS |
| CTTATCAAATAATCCTCTCT+AGG | 0.496731 | 5.4:-22789055 | None:intergenic |
| ATAGGGCTTTGAGGTACAAA+TGG | 0.498065 | 5.4:-22790674 | None:intergenic |
| GACTACTTCCTTGCTAAGAT+CGG | 0.500349 | 5.4:+22790053 | MS.gene44271:CDS |
| GCCAGCACAAGAAGTTGATA+AGG | 0.501706 | 5.4:+22790318 | MS.gene44271:CDS |
| GATCTTTCCTTGATCAAGGT+TGG | 0.502270 | 5.4:+22790635 | MS.gene44271:CDS |
| GATCCAAGTAGTTCACAGAT+AGG | 0.505367 | 5.4:-22789595 | None:intergenic |
| CTTTCCTTGATCAAGGTTGG+TGG | 0.516646 | 5.4:+22790638 | MS.gene44271:CDS |
| GGCTCTTGATTGGATTTGGA+AGG | 0.516855 | 5.4:+22789117 | MS.gene44271:CDS |
| CACAGATAGGCAAAGACTCA+AGG | 0.519430 | 5.4:-22789582 | None:intergenic |
| GAAGGATCATTTACCTAGAG+AGG | 0.532729 | 5.4:+22789042 | MS.gene44271:CDS |
| AGCACCCCTATAGGGCTTTG+AGG | 0.534318 | 5.4:-22790683 | None:intergenic |
| CTATAGGGGTGCTTGATGCA+GGG | 0.537265 | 5.4:+22790693 | MS.gene44271:CDS |
| TTCTGAAATCGCTGCAGCGG+TGG | 0.538599 | 5.4:+22790276 | MS.gene44271:CDS |
| ACCTGTAAATCTACAGATTG+AGG | 0.539104 | 5.4:-22789827 | None:intergenic |
| ACTTGCAGCTAAAATGGAAG+AGG | 0.550041 | 5.4:+22789796 | MS.gene44271:CDS |
| AGCAAGGAAGTAGTCTATGA+AGG | 0.550885 | 5.4:-22790045 | None:intergenic |
| TGATATTAAGCTCATTAGGA+TGG | 0.552715 | 5.4:+22789997 | MS.gene44271:CDS |
| TAACTTGGACAACGTTGGAT+CGG | 0.558747 | 5.4:+22788958 | MS.gene44271:CDS |
| GTCTTCTGAAATCGCTGCAG+CGG | 0.561028 | 5.4:+22790273 | MS.gene44271:CDS |
| TTAGCTTGGAATACAAACTT+CGG | 0.566152 | 5.4:-22789951 | None:intergenic |
| AATGTTAACTTGGACAACGT+TGG | 0.568354 | 5.4:+22788953 | MS.gene44271:CDS |
| GGATTTGAGTGTTAGAAGAG+AGG | 0.569462 | 5.4:+22789096 | MS.gene44271:CDS |
| AAATTTGATGGACCTTCAAG+TGG | 0.574775 | 5.4:+22790797 | MS.gene44271:CDS |
| ACATTTGTGTGGTCCCAAGA+AGG | 0.578876 | 5.4:-22788935 | None:intergenic |
| CTCATCCTTAACATAATCAA+GGG | 0.583650 | 5.4:+22790122 | MS.gene44271:CDS |
| GGTTATGGTTGAGAAAGAGA+AGG | 0.598755 | 5.4:+22789024 | MS.gene44271:CDS |
| ACAAAGTGAGGAAATTGTGA+AGG | 0.612417 | 5.4:+22789003 | MS.gene44271:CDS |
| ACAGATAGGCAAAGACTCAA+GGG | 0.613418 | 5.4:-22789581 | None:intergenic |
| TGTACCTCAAAGCCCTATAG+GGG | 0.614209 | 5.4:+22790679 | MS.gene44271:CDS |
| AAGTAGTCTATGAAGGAACA+AGG | 0.614706 | 5.4:-22790038 | None:intergenic |
| TCTCGCAACCGATCTTAGCA+AGG | 0.618158 | 5.4:-22790061 | None:intergenic |
| TGTCCAAGTTAACATTTGTG+TGG | 0.630293 | 5.4:-22788946 | None:intergenic |
| ATGTTCAGAGAGGTGTGACT+TGG | 0.635092 | 5.4:+22789741 | MS.gene44271:intron |
| TATTTGATAAGATTGCGTAG+TGG | 0.700846 | 5.4:+22789067 | MS.gene44271:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAACCAAAATTCAAATA+AGG | - | chr5.4:22789443-22789462 | None:intergenic | 15.0% |
| !!! | TTTTGTTTTAATTCATTGAA+GGG | + | chr5.4:22789146-22789165 | MS.gene44271:intron | 15.0% |
| !!! | TTTTTGTTTTAATTCATTGA+AGG | + | chr5.4:22789145-22789164 | MS.gene44271:intron | 15.0% |
| !!! | TTGAATTTTGGTTTTTTTAC+TGG | + | chr5.4:22789446-22789465 | MS.gene44271:intron | 20.0% |
| ! | AAGAGTGATGAATTAACAAA+TGG | + | chr5.4:22790728-22790747 | MS.gene44271:CDS | 25.0% |
| ! | ATCAATTAATATGCAATGTC+TGG | + | chr5.4:22789317-22789336 | MS.gene44271:intron | 25.0% |
| ! | CAAAACAAACTCATATGTAA+CGG | - | chr5.4:22789883-22789902 | None:intergenic | 25.0% |
| ! | CTAATGATATTAAGCTCATT+AGG | + | chr5.4:22789993-22790012 | MS.gene44271:CDS | 25.0% |
| ! | CTCAATCTTGTATTGTAATT+GGG | + | chr5.4:22789491-22789510 | MS.gene44271:intron | 25.0% |
| ! | GATCAGAGTAATTGAAAAAT+CGG | - | chr5.4:22789690-22789709 | None:intergenic | 25.0% |
| ! | TACAATGAAGAAATCAGTTA+TGG | - | chr5.4:22790344-22790363 | None:intergenic | 25.0% |
| ! | TATTTGATATTCGATCTTAC+CGG | - | chr5.4:22789644-22789663 | None:intergenic | 25.0% |
| ! | TGATTTCTTCATTGTAGATA+AGG | + | chr5.4:22790348-22790367 | MS.gene44271:CDS | 25.0% |
| !! | AATTTGATCCTTTTAGCATT+TGG | - | chr5.4:22790782-22790801 | None:intergenic | 25.0% |
| !! | GTTTTTCATTGAGGTTTAAT+TGG | + | chr5.4:22789339-22789358 | MS.gene44271:intron | 25.0% |
| !! | TTCTTAAGTGATTTCCATTT+TGG | + | chr5.4:22789412-22789431 | MS.gene44271:intron | 25.0% |
| !!! | CAAAAGTGTGTTTTTTTATG+TGG | + | chr5.4:22789268-22789287 | MS.gene44271:intron | 25.0% |
| !!! | GTTCATCCTTATTTGAATTT+TGG | + | chr5.4:22789434-22789453 | MS.gene44271:intron | 25.0% |
| AGCTAAAACAATTCAGAGAA+TGG | + | chr5.4:22789968-22789987 | MS.gene44271:CDS | 30.0% | |
| ATAGTAGTCCAAATGCTAAA+AGG | + | chr5.4:22790771-22790790 | MS.gene44271:CDS | 30.0% | |
| ATGTGATTCTTAACTAAGTG+TGG | + | chr5.4:22789215-22789234 | MS.gene44271:intron | 30.0% | |
| CAAATAAGGATGAACCAAAA+TGG | - | chr5.4:22789429-22789448 | None:intergenic | 30.0% | |
| CAATTACTCTGATCTCTTAT+TGG | + | chr5.4:22789696-22789715 | MS.gene44271:intron | 30.0% | |
| CCAATTACAATACAAGATTG+AGG | - | chr5.4:22789493-22789512 | None:intergenic | 30.0% | |
| CCTCAATCTTGTATTGTAAT+TGG | + | chr5.4:22789490-22789509 | MS.gene44271:intron | 30.0% | |
| CTCATCCTTAACATAATCAA+GGG | + | chr5.4:22790122-22790141 | MS.gene44271:CDS | 30.0% | |
| CTTATCAAATAATCCTCTCT+AGG | - | chr5.4:22789058-22789077 | None:intergenic | 30.0% | |
| GAAACATGATATCAAACACA+AGG | - | chr5.4:22790564-22790583 | None:intergenic | 30.0% | |
| GCTAAAAGGATCAAATTTGA+TGG | + | chr5.4:22790785-22790804 | MS.gene44271:CDS | 30.0% | |
| GGACTACTATTTGAAGAATT+TGG | - | chr5.4:22790761-22790780 | None:intergenic | 30.0% | |
| GTATACCCTTGATTATGTTA+AGG | - | chr5.4:22790130-22790149 | None:intergenic | 30.0% | |
| TAAGAACAATGTAGTACACA+AGG | - | chr5.4:22790183-22790202 | None:intergenic | 30.0% | |
| TATTTGATAAGATTGCGTAG+TGG | + | chr5.4:22789067-22789086 | MS.gene44271:CDS | 30.0% | |
| TGATATTAAGCTCATTAGGA+TGG | + | chr5.4:22789997-22790016 | MS.gene44271:CDS | 30.0% | |
| TGTGTACTACATTGTTCTTA+AGG | + | chr5.4:22790183-22790202 | MS.gene44271:intron | 30.0% | |
| ! | AGGACAACATATTTAGAGTA+AGG | - | chr5.4:22790163-22790182 | None:intergenic | 30.0% |
| ! | TTAGCTTGGAATACAAACTT+CGG | - | chr5.4:22789954-22789973 | None:intergenic | 30.0% |
| !! | CATTGATATTGATAATGCAC+AGG | + | chr5.4:22789920-22789939 | MS.gene44271:intron | 30.0% |
| !! | CCTATCAGTTTTTCAATTAC+CGG | + | chr5.4:22789622-22789641 | MS.gene44271:CDS | 30.0% |
| !! | TTTGATGATGTTGTTGTTGA+TGG | + | chr5.4:22788899-22788918 | MS.gene44271:CDS | 30.0% |
| !!! | TTCTCTGAATTGTTTTAGCT+TGG | - | chr5.4:22789968-22789987 | None:intergenic | 30.0% |
| AAGAGATCTTTCCTTGATCA+AGG | + | chr5.4:22790631-22790650 | MS.gene44271:CDS | 35.0% | |
| AAGTAGTCTATGAAGGAACA+AGG | - | chr5.4:22790041-22790060 | None:intergenic | 35.0% | |
| ACAAAGTGAGGAAATTGTGA+AGG | + | chr5.4:22789003-22789022 | MS.gene44271:CDS | 35.0% | |
| ACATGCCATACACAACAATT+AGG | - | chr5.4:22789725-22789744 | None:intergenic | 35.0% | |
| ACCTGTAAATCTACAGATTG+AGG | - | chr5.4:22789830-22789849 | None:intergenic | 35.0% | |
| AGATCTGTAACTGCATAGTA+GGG | - | chr5.4:22790405-22790424 | None:intergenic | 35.0% | |
| CCGGTAATTGAAAAACTGAT+AGG | - | chr5.4:22789625-22789644 | None:intergenic | 35.0% | |
| CTTGCTCACTGTATTTATGT+GGG | - | chr5.4:22790510-22790529 | None:intergenic | 35.0% | |
| CTTTCTGTAATGTGATCAAC+AGG | + | chr5.4:22789535-22789554 | MS.gene44271:intron | 35.0% | |
| GACCATCCAATCTAAGTTAA+TGG | + | chr5.4:22790426-22790445 | MS.gene44271:intron | 35.0% | |
| GACCATTAACTTAGATTGGA+TGG | - | chr5.4:22790431-22790450 | None:intergenic | 35.0% | |
| GCTCATCCTTAACATAATCA+AGG | + | chr5.4:22790121-22790140 | MS.gene44271:CDS | 35.0% | |
| GCTCATGCTTATTATGGATT+TGG | + | chr5.4:22789557-22789576 | MS.gene44271:CDS | 35.0% | |
| GTACAATTCAATTGCATTGC+AGG | + | chr5.4:22790229-22790248 | MS.gene44271:intron | 35.0% | |
| TAATTTGAACTTCTACCGCA+GGG | + | chr5.4:22790467-22790486 | MS.gene44271:intron | 35.0% | |
| TCTCGACCATTAACTTAGAT+TGG | - | chr5.4:22790435-22790454 | None:intergenic | 35.0% | |
| TCTTCATTGTAGATAAGGTG+AGG | + | chr5.4:22790353-22790372 | MS.gene44271:intron | 35.0% | |
| TCTTGCTCACTGTATTTATG+TGG | - | chr5.4:22790511-22790530 | None:intergenic | 35.0% | |
| TGAGGAAATTGTGAAGGTTA+TGG | + | chr5.4:22789009-22789028 | MS.gene44271:CDS | 35.0% | |
| TGTCCAAGTTAACATTTGTG+TGG | - | chr5.4:22788949-22788968 | None:intergenic | 35.0% | |
| ! | AAATTTGATGGACCTTCAAG+TGG | + | chr5.4:22790797-22790816 | MS.gene44271:CDS | 35.0% |
| ! | AATGTTAACTTGGACAACGT+TGG | + | chr5.4:22788953-22788972 | MS.gene44271:CDS | 35.0% |
| ! | TCTCGCAATCAATGACTTTT+CGG | - | chr5.4:22790093-22790112 | None:intergenic | 35.0% |
| ! | TGCTTGCTCAACTAATTTTG+TGG | + | chr5.4:22789376-22789395 | MS.gene44271:intron | 35.0% |
| ! | TGGCAGTTCCTTTAAAGAAA+TGG | - | chr5.4:22790302-22790321 | None:intergenic | 35.0% |
| !! | GATATTGATAATGCACAGGT+TGG | + | chr5.4:22789924-22789943 | MS.gene44271:intron | 35.0% |
| !! | GTATTGACTTCTTGGAATTC+AGG | + | chr5.4:22790251-22790270 | MS.gene44271:CDS | 35.0% |
| !!! | CAATGTCTGGTTTTTCATTG+AGG | + | chr5.4:22789330-22789349 | MS.gene44271:intron | 35.0% |
| AAGATTGCGTAGTGGTGATT+TGG | + | chr5.4:22789075-22789094 | MS.gene44271:CDS | 40.0% | |
| ACAGATAGGCAAAGACTCAA+GGG | - | chr5.4:22789584-22789603 | None:intergenic | 40.0% | |
| ACTTGCAGCTAAAATGGAAG+AGG | + | chr5.4:22789796-22789815 | MS.gene44271:CDS | 40.0% | |
| AGCAAGGAAGTAGTCTATGA+AGG | - | chr5.4:22790048-22790067 | None:intergenic | 40.0% | |
| ATAGTAGGGAATCCATTTCC+GGG | - | chr5.4:22790391-22790410 | None:intergenic | 40.0% | |
| CAACAGGCTCATGCTTATTA+TGG | + | chr5.4:22789551-22789570 | MS.gene44271:intron | 40.0% | |
| CATAGTAGGGAATCCATTTC+CGG | - | chr5.4:22790392-22790411 | None:intergenic | 40.0% | |
| CATTGTGAAGTTCCACTTGA+AGG | - | chr5.4:22790812-22790831 | None:intergenic | 40.0% | |
| CTGTATTTATGTGGGAACCA+CGG | - | chr5.4:22790502-22790521 | None:intergenic | 40.0% | |
| CTTCTCACTTGCAGCTAAAA+TGG | + | chr5.4:22789790-22789809 | MS.gene44271:CDS | 40.0% | |
| CTTGATTGGATTTGGAAGGT+TGG | + | chr5.4:22789121-22789140 | MS.gene44271:intron | 40.0% | |
| GAAGGATCATTTACCTAGAG+AGG | + | chr5.4:22789042-22789061 | MS.gene44271:CDS | 40.0% | |
| GACTACTTCCTTGCTAAGAT+CGG | + | chr5.4:22790053-22790072 | MS.gene44271:CDS | 40.0% | |
| GAGATCTGTAACTGCATAGT+AGG | - | chr5.4:22790406-22790425 | None:intergenic | 40.0% | |
| GATCCAAGTAGTTCACAGAT+AGG | - | chr5.4:22789598-22789617 | None:intergenic | 40.0% | |
| GATCTTTCCTTGATCAAGGT+TGG | + | chr5.4:22790635-22790654 | MS.gene44271:CDS | 40.0% | |
| GCCTCAATCTGTAGATTTAC+AGG | + | chr5.4:22789826-22789845 | MS.gene44271:CDS | 40.0% | |
| GGAAGCCTAATTGTTGTGTA+TGG | + | chr5.4:22789717-22789736 | MS.gene44271:intron | 40.0% | |
| GGACCACACAAATGTTAACT+TGG | + | chr5.4:22788943-22788962 | MS.gene44271:CDS | 40.0% | |
| GGATTTGAGTGTTAGAAGAG+AGG | + | chr5.4:22789096-22789115 | MS.gene44271:CDS | 40.0% | |
| GGTTATGGTTGAGAAAGAGA+AGG | + | chr5.4:22789024-22789043 | MS.gene44271:CDS | 40.0% | |
| GTAATTTGAACTTCTACCGC+AGG | + | chr5.4:22790466-22790485 | MS.gene44271:intron | 40.0% | |
| TAACTTGGACAACGTTGGAT+CGG | + | chr5.4:22788958-22788977 | MS.gene44271:CDS | 40.0% | |
| TTAGAAGAGAGGCTCTTGAT+TGG | + | chr5.4:22789107-22789126 | MS.gene44271:CDS | 40.0% | |
| TTGCCTATCTGTGAACTACT+TGG | + | chr5.4:22789592-22789611 | MS.gene44271:CDS | 40.0% | |
| TTGTACCTCAAAGCCCTATA+GGG | + | chr5.4:22790678-22790697 | MS.gene44271:CDS | 40.0% | |
| TTTCCTTTGCTGAATTGTGC+AGG | + | chr5.4:22790580-22790599 | MS.gene44271:intron | 40.0% | |
| TTTGTACCTCAAAGCCCTAT+AGG | + | chr5.4:22790677-22790696 | MS.gene44271:CDS | 40.0% | |
| ! | CTCGCAATCAATGACTTTTC+GGG | - | chr5.4:22790092-22790111 | None:intergenic | 40.0% |
| !! | ACGTTTTGTTGCACAAAGTG+AGG | + | chr5.4:22788991-22789010 | MS.gene44271:CDS | 40.0% |
| !! | ATAGGGCTTTGAGGTACAAA+TGG | - | chr5.4:22790677-22790696 | None:intergenic | 40.0% |
| !! | CATTGCAGGTATTGACTTCT+TGG | + | chr5.4:22790243-22790262 | MS.gene44271:intron | 40.0% |
| !! | GATGTTGTTGTTGATGGTTC+TGG | + | chr5.4:22788905-22788924 | MS.gene44271:CDS | 40.0% |
| !! | TTCTGGAATCTCACCTTCTT+GGG | + | chr5.4:22788922-22788941 | MS.gene44271:CDS | 40.0% |
| ACATTTGTGTGGTCCCAAGA+AGG | - | chr5.4:22788938-22788957 | None:intergenic | 45.0% | |
| AGATAAGGTGAGGTTGTGTG+TGG | + | chr5.4:22790363-22790382 | MS.gene44271:intron | 45.0% | |
| AGCGGTGGCCATTTCTTTAA+AGG | + | chr5.4:22790291-22790310 | MS.gene44271:CDS | 45.0% | |
| ATTGCCACCAACCTTGATCA+AGG | - | chr5.4:22790645-22790664 | None:intergenic | 45.0% | |
| CACAGATAGGCAAAGACTCA+AGG | - | chr5.4:22789585-22789604 | None:intergenic | 45.0% | |
| CTTTCCTTGATCAAGGTTGG+TGG | + | chr5.4:22790638-22790657 | MS.gene44271:CDS | 45.0% | |
| GAGAGGCTCTTGATTGGATT+TGG | + | chr5.4:22789113-22789132 | MS.gene44271:CDS | 45.0% | |
| GCCTTATCAACTTCTTGTGC+TGG | - | chr5.4:22790322-22790341 | None:intergenic | 45.0% | |
| GGCTCTTGATTGGATTTGGA+AGG | + | chr5.4:22789117-22789136 | MS.gene44271:CDS | 45.0% | |
| TCTCCTGCACAATTCAGCAA+AGG | - | chr5.4:22790586-22790605 | None:intergenic | 45.0% | |
| TGTACCTCAAAGCCCTATAG+GGG | + | chr5.4:22790679-22790698 | MS.gene44271:CDS | 45.0% | |
| TGTGTATGGCATGTTCAGAG+AGG | + | chr5.4:22789731-22789750 | MS.gene44271:intron | 45.0% | |
| ! | ATGTTCAGAGAGGTGTGACT+TGG | + | chr5.4:22789741-22789760 | MS.gene44271:intron | 45.0% |
| !! | GCCAGCACAAGAAGTTGATA+AGG | + | chr5.4:22790318-22790337 | MS.gene44271:CDS | 45.0% |
| !! | GTTCTGGAATCTCACCTTCT+TGG | + | chr5.4:22788921-22788940 | MS.gene44271:CDS | 45.0% |
| AACTTCTACCGCAGGGAATC+CGG | + | chr5.4:22790474-22790493 | MS.gene44271:intron | 50.0% | |
| CTGCATCAAGCACCCCTATA+GGG | - | chr5.4:22790694-22790713 | None:intergenic | 50.0% | |
| TCTCGCAACCGATCTTAGCA+AGG | - | chr5.4:22790064-22790083 | None:intergenic | 50.0% | |
| TTGTGTGTGGTTCCCGGAAA+TGG | + | chr5.4:22790376-22790395 | MS.gene44271:intron | 50.0% | |
| !! | CTATAGGGGTGCTTGATGCA+GGG | + | chr5.4:22790693-22790712 | MS.gene44271:CDS | 50.0% |
| !! | GTCTTCTGAAATCGCTGCAG+CGG | + | chr5.4:22790273-22790292 | MS.gene44271:CDS | 50.0% |
| ACTTCTACCGCAGGGAATCC+GGG | + | chr5.4:22790475-22790494 | MS.gene44271:intron | 55.0% | |
| AGCACCCCTATAGGGCTTTG+AGG | - | chr5.4:22790686-22790705 | None:intergenic | 55.0% | |
| CCTGCATCAAGCACCCCTAT+AGG | - | chr5.4:22790695-22790714 | None:intergenic | 55.0% | |
| GTGAGGTTGTGTGTGGTTCC+CGG | + | chr5.4:22790370-22790389 | MS.gene44271:intron | 55.0% | |
| TTATGTGGGAACCACGGACC+CGG | - | chr5.4:22790496-22790515 | None:intergenic | 55.0% | |
| !! | CCTATAGGGGTGCTTGATGC+AGG | + | chr5.4:22790692-22790711 | MS.gene44271:CDS | 55.0% |
| !! | TTCTGAAATCGCTGCAGCGG+TGG | + | chr5.4:22790276-22790295 | MS.gene44271:CDS | 55.0% |
| CCACGGACCCGGATTCCCTG+CGG | - | chr5.4:22790485-22790504 | None:intergenic | 70.0% | |
| CCGCAGGGAATCCGGGTCCG+TGG | + | chr5.4:22790482-22790501 | MS.gene44271:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 22788833 | 22790832 | 22788833 | ID=MS.gene44271 |
| chr5.4 | mRNA | 22788833 | 22790832 | 22788833 | ID=MS.gene44271.t1;Parent=MS.gene44271 |
| chr5.4 | exon | 22788833 | 22789138 | 22788833 | ID=MS.gene44271.t1.exon1;Parent=MS.gene44271.t1 |
| chr5.4 | CDS | 22788833 | 22789138 | 22788833 | ID=cds.MS.gene44271.t1;Parent=MS.gene44271.t1 |
| chr5.4 | exon | 22789557 | 22789643 | 22789557 | ID=MS.gene44271.t1.exon2;Parent=MS.gene44271.t1 |
| chr5.4 | CDS | 22789557 | 22789643 | 22789557 | ID=cds.MS.gene44271.t1;Parent=MS.gene44271.t1 |
| chr5.4 | exon | 22789749 | 22789847 | 22789749 | ID=MS.gene44271.t1.exon3;Parent=MS.gene44271.t1 |
| chr5.4 | CDS | 22789749 | 22789847 | 22789749 | ID=cds.MS.gene44271.t1;Parent=MS.gene44271.t1 |
| chr5.4 | exon | 22789942 | 22790143 | 22789942 | ID=MS.gene44271.t1.exon4;Parent=MS.gene44271.t1 |
| chr5.4 | CDS | 22789942 | 22790143 | 22789942 | ID=cds.MS.gene44271.t1;Parent=MS.gene44271.t1 |
| chr5.4 | exon | 22790251 | 22790369 | 22790251 | ID=MS.gene44271.t1.exon5;Parent=MS.gene44271.t1 |
| chr5.4 | CDS | 22790251 | 22790369 | 22790251 | ID=cds.MS.gene44271.t1;Parent=MS.gene44271.t1 |
| chr5.4 | exon | 22790602 | 22790832 | 22790602 | ID=MS.gene44271.t1.exon6;Parent=MS.gene44271.t1 |
| chr5.4 | CDS | 22790602 | 22790832 | 22790602 | ID=cds.MS.gene44271.t1;Parent=MS.gene44271.t1 |
| Gene Sequence |
| Protein sequence |
