AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene44620

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene44620.t1 MTR_7g013740 93.333 105 7 0 1 105 1 105 1.87e-68 202
MS.gene44620.t1 MTR_7g013730 79.048 105 22 0 1 105 1 105 1.02e-58 181
MS.gene44620.t1 MTR_3g014000 67.327 101 23 3 1 101 1 91 1.80e-39 128
MS.gene44620.t1 MTR_3g025880 60.550 109 39 2 1 105 1 109 9.84e-39 134
MS.gene44620.t1 MTR_4g109540 59.259 108 40 2 1 105 1 107 3.69e-38 129
MS.gene44620.t1 MTR_4g109540 56.034 116 39 3 1 105 1 115 1.76e-35 122
MS.gene44620.t1 MTR_3g084040 49.533 107 45 3 1 105 1 100 6.30e-30 104
MS.gene44620.t1 MTR_3g084040 49.057 106 45 3 1 104 1 99 1.72e-29 102
MS.gene44620.t1 MTR_7g099940 40.909 110 48 3 1 104 1 99 2.41e-20 80.1
MS.gene44620.t1 MTR_4g070080 46.154 65 35 0 41 105 7 71 7.06e-20 78.6
MS.gene44620.t1 MTR_4g070080 46.154 65 35 0 41 105 7 71 1.54e-19 78.6
MS.gene44620.t1 MTR_4g070190 44.615 65 36 0 41 105 9 73 4.83e-18 74.7
MS.gene44620.t1 MTR_3g080130 46.875 64 34 0 41 104 37 100 7.66e-18 73.6
MS.gene44620.t1 MTR_4g070140 44.615 65 36 0 41 105 9 73 5.54e-17 72.4
MS.gene44620.t1 MTR_7g105260 48.438 64 33 0 41 104 33 96 6.62e-17 71.2
MS.gene44620.t1 MTR_4g081520 49.254 67 34 0 38 104 49 115 1.72e-16 70.1
MS.gene44620.t1 MTR_4g063560 32.099 81 55 0 24 104 17 97 1.17e-15 67.4
MS.gene44620.t1 MTR_1g064230 44.615 65 36 0 41 105 197 261 3.55e-15 69.3
MS.gene44620.t1 MTR_4g081510 40.000 85 47 1 24 104 24 108 7.21e-15 67.0
MS.gene44620.t1 MTR_1g092860 37.931 87 52 1 20 104 170 256 2.79e-14 66.6
MS.gene44620.t1 MTR_3g029580 40.909 66 39 0 39 104 31 96 3.47e-14 63.9
MS.gene44620.t1 MTR_3g029580 40.909 66 39 0 39 104 31 96 3.91e-14 63.9
MS.gene44620.t1 MTR_6g477870 36.765 68 43 0 40 107 95 162 6.56e-14 63.9
MS.gene44620.t1 MTR_5g097580 46.377 69 37 0 39 107 5 73 8.59e-14 65.9
MS.gene44620.t1 MTR_5g097580 46.377 69 37 0 39 107 5 73 9.23e-14 65.9
MS.gene44620.t1 MTR_4g104470 36.082 97 56 1 8 104 190 280 9.27e-14 65.5
MS.gene44620.t1 MTR_1g045510 43.284 67 38 0 41 107 205 271 1.22e-13 65.1
MS.gene44620.t1 MTR_3g075500 35.065 77 45 1 28 104 199 270 2.98e-13 63.9
MS.gene44620.t1 MTR_6g477870 36.923 65 41 0 40 104 95 159 3.27e-13 62.4
MS.gene44620.t1 MTR_3g075500 35.000 80 47 1 28 107 199 273 3.42e-13 63.9
MS.gene44620.t1 MTR_7g117495 45.763 59 32 0 41 99 19 77 3.92e-13 63.5
MS.gene44620.t1 MTR_7g117495 45.763 59 32 0 41 99 19 77 4.23e-13 63.2
MS.gene44620.t1 MTR_3g055990 54.000 50 23 0 40 89 6 55 5.56e-13 63.5
MS.gene44620.t1 MTR_3g055990 54.000 50 23 0 40 89 6 55 5.56e-13 63.5
MS.gene44620.t1 MTR_8g024520 48.333 60 31 0 40 99 25 84 7.84e-13 62.8
MS.gene44620.t1 MTR_8g024520 48.333 60 31 0 40 99 25 84 7.94e-13 62.8
MS.gene44620.t1 MTR_3g092490 34.940 83 51 1 23 105 9 88 9.24e-13 61.2
MS.gene44620.t1 MTR_3g092490 34.940 83 51 1 23 105 9 88 3.59e-12 60.8
MS.gene44620.t1 MTR_3g116130 45.614 57 31 0 41 97 30 86 4.03e-12 61.2
MS.gene44620.t1 MTR_3g092490 34.940 83 51 1 23 105 9 88 4.10e-12 60.5
MS.gene44620.t1 MTR_2g026180 47.170 53 28 0 37 89 1 53 1.01e-11 60.1
MS.gene44620.t1 MTR_7g106440 41.538 65 38 0 38 102 210 274 1.27e-11 59.7
MS.gene44620.t1 MTR_3g116130 44.828 58 32 0 41 98 30 87 1.72e-11 59.3
MS.gene44620.t1 MTR_6g040070 42.647 68 38 1 37 104 206 272 2.42e-11 59.3
MS.gene44620.t1 MTR_5g044970 40.000 65 36 1 42 106 12 73 4.19e-11 56.6
MS.gene44620.t1 MTR_4g035310 42.623 61 32 1 41 101 17 74 4.55e-11 57.8
MS.gene44620.t1 MTR_4g035310 42.623 61 32 1 41 101 17 74 4.65e-11 57.8
MS.gene44620.t1 MTR_6g004810 36.364 99 57 3 9 104 101 196 4.82e-11 58.2
MS.gene44620.t1 MTR_4g124940 42.857 63 36 0 42 104 133 195 5.18e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene44620.t1 AT5G61030 60.000 105 42 0 1 105 1 105 3.45e-41 138
MS.gene44620.t1 AT5G61030 60.000 105 42 0 1 105 1 105 3.45e-41 138
MS.gene44620.t1 AT1G74230 53.333 105 42 3 1 105 1 98 1.49e-31 112
MS.gene44620.t1 AT4G13850 45.714 105 52 2 1 105 1 100 7.52e-27 96.3
MS.gene44620.t1 AT4G13850 45.714 105 52 2 1 105 1 100 1.27e-26 96.3
MS.gene44620.t1 AT4G13850 45.714 105 52 2 1 105 1 100 1.62e-26 96.3
MS.gene44620.t1 AT4G13850 45.714 105 52 2 1 105 1 100 1.84e-26 96.3
MS.gene44620.t1 AT3G23830 42.857 105 55 2 1 105 1 100 3.73e-24 89.7
MS.gene44620.t1 AT3G23830 42.857 105 55 2 1 105 1 100 3.73e-24 89.7
MS.gene44620.t1 AT1G18630 48.000 75 39 0 31 105 27 101 3.35e-20 80.1
MS.gene44620.t1 AT2G37510 49.275 69 35 0 36 104 30 98 3.43e-18 74.7
MS.gene44620.t1 AT2G21660 46.154 65 35 0 41 105 9 73 3.82e-18 75.1
MS.gene44620.t1 AT5G59865 48.148 81 41 1 24 104 11 90 4.24e-18 73.6
MS.gene44620.t1 AT2G21660 46.154 65 35 0 41 105 9 73 5.49e-18 75.1
MS.gene44620.t1 AT4G39260 41.538 65 38 0 41 105 7 71 6.25e-17 70.1
MS.gene44620.t1 AT4G39260 41.538 65 38 0 41 105 7 71 1.19e-16 70.1
MS.gene44620.t1 AT3G08000 50.000 64 32 0 41 104 42 105 1.32e-16 70.5
MS.gene44620.t1 AT4G13860 47.761 67 35 0 39 105 2 68 2.47e-16 68.2
MS.gene44620.t1 AT5G47320 35.238 105 59 2 1 105 1 96 2.87e-16 71.2
MS.gene44620.t1 AT4G39260 41.538 65 38 0 41 105 7 71 3.06e-16 70.1
MS.gene44620.t1 AT2G37220 47.692 65 34 0 41 105 205 269 3.12e-16 72.0
MS.gene44620.t1 AT5G06210 40.000 80 48 0 26 105 20 99 3.22e-16 69.7
MS.gene44620.t1 AT4G39260 41.935 62 36 0 41 102 7 68 3.93e-16 68.2
MS.gene44620.t1 AT3G46020 46.970 66 35 0 39 104 6 71 4.29e-16 68.2
MS.gene44620.t1 AT3G53460 47.692 65 34 0 41 105 279 343 1.84e-15 70.5
MS.gene44620.t1 AT3G53460 47.692 65 34 0 41 105 258 322 1.88e-15 70.5
MS.gene44620.t1 AT3G53460 47.692 65 34 0 41 105 258 322 1.88e-15 70.5
MS.gene44620.t1 AT3G53460 47.692 65 34 0 41 105 258 322 1.88e-15 70.5
MS.gene44620.t1 AT2G27330 46.053 76 38 2 27 102 11 83 2.10e-15 66.6
MS.gene44620.t1 AT5G54580 48.485 66 34 0 39 104 55 120 1.06e-14 65.9
MS.gene44620.t1 AT4G24770 41.791 67 39 0 41 107 245 311 2.97e-14 67.0
MS.gene44620.t1 AT4G24770 41.791 67 39 0 41 107 245 311 2.97e-14 67.0
MS.gene44620.t1 AT5G50250 41.791 67 39 0 41 107 208 274 7.47e-14 65.9
MS.gene44620.t1 AT5G11412 43.333 60 34 0 40 99 52 111 7.50e-14 64.3
MS.gene44620.t1 AT1G76460 50.000 58 29 0 41 98 25 82 1.18e-13 65.1
MS.gene44620.t1 AT1G22910 46.552 58 31 0 41 98 14 71 5.95e-13 62.8
MS.gene44620.t1 AT5G47620 52.830 53 25 0 37 89 3 55 6.06e-13 63.5
MS.gene44620.t1 AT5G47620 52.830 53 25 0 37 89 3 55 6.24e-13 63.5
MS.gene44620.t1 AT5G47620 52.830 53 25 0 37 89 3 55 6.24e-13 63.5
MS.gene44620.t1 AT5G47620 52.830 53 25 0 37 89 3 55 6.24e-13 63.5
MS.gene44620.t1 AT1G22910 45.763 59 32 0 40 98 13 71 7.20e-13 62.8
MS.gene44620.t1 AT1G22910 47.368 57 30 0 41 97 14 70 7.65e-13 63.2
MS.gene44620.t1 AT1G33470 46.552 58 31 0 41 98 8 65 7.68e-13 62.4
MS.gene44620.t1 AT1G33470 46.552 58 31 0 41 98 8 65 7.68e-13 62.4
MS.gene44620.t1 AT1G33470 46.552 58 31 0 41 98 8 65 7.69e-13 62.4
MS.gene44620.t1 AT2G46780 45.161 62 34 0 41 102 23 84 8.70e-13 63.2
MS.gene44620.t1 AT2G46780 45.161 62 34 0 41 102 23 84 8.70e-13 63.2
MS.gene44620.t1 AT3G07810 42.647 68 39 0 39 106 5 72 8.80e-13 63.2
MS.gene44620.t1 AT3G07810 42.647 68 39 0 39 106 5 72 8.80e-13 63.2
MS.gene44620.t1 AT2G37510 36.170 94 35 1 36 104 30 123 1.08e-12 60.8
MS.gene44620.t1 AT1G20880 48.276 58 30 0 41 98 25 82 1.16e-12 62.4
MS.gene44620.t1 AT1G20880 48.276 58 30 0 41 98 25 82 1.16e-12 62.4
MS.gene44620.t1 AT1G20880 48.276 58 30 0 41 98 25 82 1.16e-12 62.4
MS.gene44620.t1 AT3G26420 40.000 65 36 1 41 102 8 72 2.52e-12 61.2
MS.gene44620.t1 AT5G53680 41.667 60 35 0 40 99 13 72 4.24e-12 59.3
MS.gene44620.t1 AT5G55550 50.000 50 25 0 40 89 6 55 4.39e-12 61.2
MS.gene44620.t1 AT5G55550 50.000 50 25 0 40 89 6 55 5.27e-12 60.8
MS.gene44620.t1 AT5G55550 50.000 50 25 0 40 89 6 55 5.27e-12 60.8
MS.gene44620.t1 AT5G55550 50.000 50 25 0 40 89 6 55 5.27e-12 60.8
MS.gene44620.t1 AT5G55550 50.000 50 25 0 40 89 6 55 5.27e-12 60.8
MS.gene44620.t1 AT5G55550 50.000 50 25 0 40 89 6 55 5.27e-12 60.8
MS.gene44620.t1 AT4G13860 52.000 50 24 0 56 105 2 51 5.31e-12 57.0
MS.gene44620.t1 AT5G55550 50.000 50 25 0 40 89 6 55 6.76e-12 60.8
MS.gene44620.t1 AT5G55550 50.000 50 25 0 40 89 6 55 6.76e-12 60.8
MS.gene44620.t1 AT5G55550 50.000 50 25 0 40 89 6 55 6.76e-12 60.8
MS.gene44620.t1 AT5G55550 50.000 50 25 0 40 89 6 55 6.76e-12 60.8
MS.gene44620.t1 AT5G55550 50.000 50 25 0 40 89 6 55 6.76e-12 60.8
MS.gene44620.t1 AT4G26650 48.000 50 26 0 40 89 15 64 8.15e-12 60.5
MS.gene44620.t1 AT1G73530 38.462 65 40 0 40 104 77 141 8.16e-12 58.9
MS.gene44620.t1 AT4G26650 48.000 50 26 0 40 89 12 61 8.39e-12 60.5
MS.gene44620.t1 AT1G78260 42.373 59 34 0 40 98 17 75 1.03e-11 59.7
MS.gene44620.t1 AT1G78260 43.103 58 33 0 41 98 18 75 1.17e-11 59.7
MS.gene44620.t1 AT2G33410 43.478 69 36 1 40 105 6 74 1.20e-11 60.1
MS.gene44620.t1 AT4G14300 50.000 60 30 0 40 99 6 65 1.46e-11 59.7
MS.gene44620.t1 AT4G14300 50.000 60 30 0 40 99 6 65 1.46e-11 59.7
MS.gene44620.t1 AT3G20930 35.294 68 44 0 37 104 279 346 1.52e-11 59.7
MS.gene44620.t1 AT1G60000 40.323 62 37 0 41 102 178 239 2.14e-11 58.9
MS.gene44620.t1 AT3G14100 40.299 67 40 0 38 104 142 208 2.40e-11 58.9
MS.gene44620.t1 AT2G21690 37.705 61 38 0 42 102 9 69 2.46e-11 56.2
MS.gene44620.t1 AT1G54080 40.299 67 40 0 38 104 146 212 2.57e-11 58.9
MS.gene44620.t1 AT5G04280 34.848 66 43 0 40 105 7 72 3.75e-11 58.5
MS.gene44620.t1 AT2G22100 38.806 67 41 0 33 99 156 222 4.58e-11 58.2
MS.gene44620.t1 AT1G22330 43.103 58 33 0 41 98 18 75 5.93e-11 57.8
MS.gene44620.t1 AT1G13690 40.000 65 36 1 42 106 15 76 6.47e-11 56.6

Find 26 sgRNAs with CRISPR-Local

Find 89 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGGCGTTCTTTGGTAAAA+TGG 0.181499 7.3:+83832186 None:intergenic
GGAAGCATCTTCTGCCCTTC+AGG 0.322496 7.3:+83833242 MS.gene44620:CDS
GTTTGAGCAATGGCGTTCTT+TGG 0.330058 7.3:+83832178 None:intergenic
CAAGGCAGGTCCAAAGGATT+TGG 0.333728 7.3:+83833195 MS.gene44620:CDS
TTTATCTATGTCTACTCCTT+TGG 0.355801 7.3:+83832252 MS.gene44620:CDS
CTTTGGACCTGCCTTGTTCA+CGG 0.409016 7.3:-83833188 None:intergenic
AGTTACGAAGCCAAATCCTT+TGG 0.434906 7.3:-83833205 None:intergenic
CCCTATGGAGAAGTTCTTGA+TGG 0.438272 7.3:+83832444 MS.gene44620:CDS
ATGGCGTTCTTTGGTAAAAT+GGG 0.448549 7.3:+83832187 MS.gene44620:CDS
CATAGGGAGCAAAAGATTCT+CGG 0.489579 7.3:-83832428 None:intergenic
TCTGCAAAGCTTTATGTTGG+AGG 0.496801 7.3:+83832301 MS.gene44620:CDS
ATCTTCTGCCCTTCAGGCCA+TGG 0.501939 7.3:+83833248 MS.gene44620:CDS
CCTTGTTATCCATGGCCTGA+AGG 0.507202 7.3:-83833257 None:intergenic
TCATCTGCAAAGCTTTATGT+TGG 0.509557 7.3:+83832298 MS.gene44620:CDS
CTTGTTATCCATGGCCTGAA+GGG 0.523916 7.3:-83833256 None:intergenic
ATGACATGGATCTAATTGCT+TGG 0.526965 7.3:-83832279 None:intergenic
TGATAATACCTTGTTATCCA+TGG 0.548529 7.3:-83833265 None:intergenic
GAGTAGACATAGATAAATCA+TGG 0.554591 7.3:-83832246 None:intergenic
TCATCGACCGTGAACAAGGC+AGG 0.562492 7.3:+83833181 MS.gene44620:CDS
CCTTCAGGCCATGGATAACA+AGG 0.562607 7.3:+83833257 MS.gene44620:CDS
GTTATCATCGACCGTGAACA+AGG 0.569596 7.3:+83833177 MS.gene44620:CDS
CCATCAAGAACTTCTCCATA+GGG 0.571213 7.3:-83832444 None:intergenic
CGTGAACAAGGCAGGTCCAA+AGG 0.574639 7.3:+83833189 MS.gene44620:CDS
ACCATCAAGAACTTCTCCAT+AGG 0.583437 7.3:-83832445 None:intergenic
ATAAAGCTTTGCAGATGACA+TGG 0.587694 7.3:-83832293 None:intergenic
CTAATTGCTTGGAATGCCAA+AGG 0.621523 7.3:-83832268 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATATAATGATGACTT+GGG + chr7.3:83833469-83833488 MS.gene44620:intron 15.0%
!! TTATATATGATTTGATAGAT+TGG + chr7.3:83833010-83833029 MS.gene44620:intron 15.0%
!!! ATAATTTTCATTGAAAGTAA+AGG + chr7.3:83833053-83833072 MS.gene44620:intron 15.0%
!!! ATTTTTTGCATTCATTATAA+TGG - chr7.3:83833456-83833475 None:intergenic 15.0%
!! ATGCACATAATATTAATTAG+AGG + chr7.3:83833496-83833515 MS.gene44620:intron 20.0%
!! CAAAAAATATAATGATGACT+TGG + chr7.3:83833468-83833487 MS.gene44620:intron 20.0%
!! TAGTTATTCATCATTTCATA+TGG + chr7.3:83832496-83832515 MS.gene44620:intron 20.0%
!! TGCACATAATATTAATTAGA+GGG + chr7.3:83833497-83833516 MS.gene44620:intron 20.0%
!! TGTTTATTTGATACAAGTTA+AGG + chr7.3:83833360-83833379 MS.gene44620:intron 20.0%
!!! TAATTGCAATTTCAAACTTT+TGG - chr7.3:83832744-83832763 None:intergenic 20.0%
! AATGATCGCTCAAAAAATAA+TGG - chr7.3:83832608-83832627 None:intergenic 25.0%
! AATTATAGCTACATTCCATT+AGG - chr7.3:83832353-83832372 None:intergenic 25.0%
! ATGATCGCTCAAAAAATAAT+GGG - chr7.3:83832607-83832626 None:intergenic 25.0%
! TACTAGTTATTCATCATTTC+AGG + chr7.3:83832493-83832512 MS.gene44620:intron 25.0%
! TATTAGTGAAAGAAAGAGAA+TGG + chr7.3:83833389-83833408 MS.gene44620:intron 25.0%
!! AAAAGACTTAATTGCACTTT+TGG - chr7.3:83832992-83833011 None:intergenic 25.0%
AATAGCATAATCCTGATATC+TGG + chr7.3:83832962-83832981 MS.gene44620:intron 30.0%
AATCAATAATCCCCATGTTA+TGG - chr7.3:83833116-83833135 None:intergenic 30.0%
ACAAGTATGCCAATTGTTAT+AGG - chr7.3:83833343-83833362 None:intergenic 30.0%
ATAAAATCGCTCAGAAAAAG+TGG + chr7.3:83832932-83832951 MS.gene44620:intron 30.0%
ATAGCATAATCCTGATATCT+GGG + chr7.3:83832963-83832982 MS.gene44620:intron 30.0%
GAAAATCTGACACTTATTGT+AGG + chr7.3:83833533-83833552 MS.gene44620:intron 30.0%
GAGTAGACATAGATAAATCA+TGG - chr7.3:83832249-83832268 None:intergenic 30.0%
GATAACTTCTAGCGAAAATT+TGG + chr7.3:83832872-83832891 MS.gene44620:intron 30.0%
GATCATTACCCTTTATGATT+TGG + chr7.3:83832621-83832640 MS.gene44620:intron 30.0%
TAAAATCGCTCAGAAAAAGT+GGG + chr7.3:83832933-83832952 MS.gene44620:intron 30.0%
TAAAGGTCACACAAAATTGA+TGG + chr7.3:83833070-83833089 MS.gene44620:intron 30.0%
TTTATCTATGTCTACTCCTT+TGG + chr7.3:83832252-83832271 MS.gene44620:CDS 30.0%
! ACAATAACGGAAAACATAAG+GGG + chr7.3:83832909-83832928 MS.gene44620:intron 30.0%
! AGGTAGAGGTAATATGATTT+TGG + chr7.3:83832579-83832598 MS.gene44620:intron 30.0%
! CACAATAACGGAAAACATAA+GGG + chr7.3:83832908-83832927 MS.gene44620:intron 30.0%
! TCACAATAACGGAAAACATA+AGG + chr7.3:83832907-83832926 MS.gene44620:intron 30.0%
! TGATAATACCTTGTTATCCA+TGG - chr7.3:83833268-83833287 None:intergenic 30.0%
! TTATTCATCATTTCAGGTAG+AGG + chr7.3:83832565-83832584 MS.gene44620:intron 30.0%
!! AATTTTATAGAAAGGCATGC+TGG + chr7.3:83832819-83832838 MS.gene44620:intron 30.0%
!!! TTCAAACTTTTGGTGCTTTT+TGG - chr7.3:83832734-83832753 None:intergenic 30.0%
AAAATCGCTCAGAAAAAGTG+GGG + chr7.3:83832934-83832953 MS.gene44620:intron 35.0%
AACTTCTAGCGAAAATTTGG+AGG + chr7.3:83832875-83832894 MS.gene44620:intron 35.0%
AGCATATGCATTCCATAACA+TGG + chr7.3:83833101-83833120 MS.gene44620:intron 35.0%
ATAAAGCTTTGCAGATGACA+TGG - chr7.3:83832296-83832315 None:intergenic 35.0%
ATCATGTTGAACTGTCCTAA+TGG + chr7.3:83832335-83832354 MS.gene44620:intron 35.0%
ATCTGACACTTATTGTAGGA+TGG + chr7.3:83833537-83833556 MS.gene44620:intron 35.0%
ATGACATGGATCTAATTGCT+TGG - chr7.3:83832282-83832301 None:intergenic 35.0%
ATGGCGTTCTTTGGTAAAAT+GGG + chr7.3:83832187-83832206 MS.gene44620:CDS 35.0%
CATATGCATTCCATAACATG+GGG + chr7.3:83833103-83833122 MS.gene44620:intron 35.0%
GCATATGCATTCCATAACAT+GGG + chr7.3:83833102-83833121 MS.gene44620:intron 35.0%
GGGGAATACCAAATCATAAA+GGG - chr7.3:83832632-83832651 None:intergenic 35.0%
TCATATGGAGAAGTTCTTGA+TGG + chr7.3:83832511-83832530 MS.gene44620:intron 35.0%
TCATTTGCTCTCACCTATAT+GGG + chr7.3:83832770-83832789 MS.gene44620:intron 35.0%
TCCAACTCTTATAGCTAATG+TGG + chr7.3:83832686-83832705 MS.gene44620:intron 35.0%
TCTCTTCGTCCTATAACAAT+TGG + chr7.3:83833331-83833350 MS.gene44620:intron 35.0%
TGCCAAAAATCAACCCATAT+AGG - chr7.3:83832786-83832805 None:intergenic 35.0%
TTCATTTGCTCTCACCTATA+TGG + chr7.3:83832769-83832788 MS.gene44620:intron 35.0%
! CTAATTTTCAATCTCGATGC+AGG + chr7.3:83832375-83832394 MS.gene44620:intron 35.0%
! GGACTAGCAAATCACAATAA+CGG + chr7.3:83832896-83832915 MS.gene44620:intron 35.0%
! TCATCTGCAAAGCTTTATGT+TGG + chr7.3:83832298-83832317 MS.gene44620:CDS 35.0%
!!! CACCTATATGGGTTGATTTT+TGG + chr7.3:83832781-83832800 MS.gene44620:intron 35.0%
AAATCGCTCAGAAAAAGTGG+GGG + chr7.3:83832935-83832954 MS.gene44620:intron 40.0%
ACCATCAAGAACTTCTCCAT+AGG - chr7.3:83832448-83832467 None:intergenic 40.0%
AGTTACGAAGCCAAATCCTT+TGG - chr7.3:83833208-83833227 None:intergenic 40.0%
ATGTCCTGTCAGCGTAAATT+TGG - chr7.3:83832658-83832677 None:intergenic 40.0%
CATAGGGAGCAAAAGATTCT+CGG - chr7.3:83832431-83832450 None:intergenic 40.0%
CCATCAAGAACTTCTCCATA+GGG - chr7.3:83832447-83832466 None:intergenic 40.0%
CGGGGAATACCAAATCATAA+AGG - chr7.3:83832633-83832652 None:intergenic 40.0%
CTAATTGCTTGGAATGCCAA+AGG - chr7.3:83832271-83832290 None:intergenic 40.0%
GCCACATTAGCTATAAGAGT+TGG - chr7.3:83832690-83832709 None:intergenic 40.0%
TGTCCTGTCAGCGTAAATTT+GGG - chr7.3:83832657-83832676 None:intergenic 40.0%
! TCTGCAAAGCTTTATGTTGG+AGG + chr7.3:83832301-83832320 MS.gene44620:CDS 40.0%
CCCTATGGAGAAGTTCTTGA+TGG + chr7.3:83832444-83832463 MS.gene44620:CDS 45.0%
CTGTCAGCGTAAATTTGGGA+CGG - chr7.3:83832653-83832672 None:intergenic 45.0%
GTTATCATCGACCGTGAACA+AGG + chr7.3:83833177-83833196 MS.gene44620:CDS 45.0%
! CGAGAATCTTTTGCTCCCTA+TGG + chr7.3:83832429-83832448 MS.gene44620:CDS 45.0%
! CGTAACTTTTGCAACAAGCG+AGG + chr7.3:83833221-83833240 MS.gene44620:CDS 45.0%
! CTTGTTATCCATGGCCTGAA+GGG - chr7.3:83833259-83833278 None:intergenic 45.0%
! CTTTTGGTCTCCCAGATATC+AGG - chr7.3:83832976-83832995 None:intergenic 45.0%
! TGTCAGCGTAAATTTGGGAC+GGG - chr7.3:83832652-83832671 None:intergenic 45.0%
!!! TTATATTTAATTTTATAGAA+AGG + chr7.3:83832811-83832830 MS.gene44620:intron 5.0%
CAAGGCAGGTCCAAAGGATT+TGG + chr7.3:83833195-83833214 MS.gene44620:CDS 50.0%
CCTTCAGGCCATGGATAACA+AGG + chr7.3:83833257-83833276 MS.gene44620:CDS 50.0%
CGGTCGATGATAACTCTTGC+TGG - chr7.3:83833171-83833190 None:intergenic 50.0%
CGTCCCAAATTTACGCTGAC+AGG + chr7.3:83832651-83832670 MS.gene44620:intron 50.0%
! CCTTGTTATCCATGGCCTGA+AGG - chr7.3:83833260-83833279 None:intergenic 50.0%
! CTTTGGACCTGCCTTGTTCA+CGG - chr7.3:83833191-83833210 None:intergenic 50.0%
! GGCATGCTGGCTATGAGAAT+TGG + chr7.3:83832832-83832851 MS.gene44620:intron 50.0%
! GTCAGCGTAAATTTGGGACG+GGG - chr7.3:83832651-83832670 None:intergenic 50.0%
ATCTTCTGCCCTTCAGGCCA+TGG + chr7.3:83833248-83833267 MS.gene44620:CDS 55.0%
CGTGAACAAGGCAGGTCCAA+AGG + chr7.3:83833189-83833208 MS.gene44620:CDS 55.0%
TCATCGACCGTGAACAAGGC+AGG + chr7.3:83833181-83833200 MS.gene44620:CDS 55.0%
!! GGAAGCATCTTCTGCCCTTC+AGG + chr7.3:83833242-83833261 MS.gene44620:CDS 55.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 83832187 83833566 83832187 ID=MS.gene44620
chr7.3 mRNA 83832187 83833566 83832187 ID=MS.gene44620.t1;Parent=MS.gene44620
chr7.3 exon 83832187 83832322 83832187 ID=MS.gene44620.t1.exon1;Parent=MS.gene44620.t1
chr7.3 CDS 83832187 83832322 83832187 ID=cds.MS.gene44620.t1;Parent=MS.gene44620.t1
chr7.3 exon 83832397 83832465 83832397 ID=MS.gene44620.t1.exon2;Parent=MS.gene44620.t1
chr7.3 CDS 83832397 83832465 83832397 ID=cds.MS.gene44620.t1;Parent=MS.gene44620.t1
chr7.3 exon 83833172 83833278 83833172 ID=MS.gene44620.t1.exon3;Parent=MS.gene44620.t1
chr7.3 CDS 83833172 83833278 83833172 ID=cds.MS.gene44620.t1;Parent=MS.gene44620.t1
chr7.3 exon 83833555 83833566 83833555 ID=MS.gene44620.t1.exon4;Parent=MS.gene44620.t1
chr7.3 CDS 83833555 83833566 83833555 ID=cds.MS.gene44620.t1;Parent=MS.gene44620.t1
Gene Sequence

>MS.gene44620

ATGGCGTTCTTTGGTAAAATGGGAAAGTTACTCAAGAATTCTGCAATCAAGCACATCAACCATGATTTATCTATGTCTACTCCTTTGGCATTCCAAGCAATTAGATCCATGTCATCTGCAAAGCTTTATGTTGGAGGTACATTAGTTTATCATGTTGAACTGTCCTAATGGAATGTAGCTATAATTTTCTAATTTTCAATCTCGATGCAGGTATTTCGTATAGCACTGATGATGCGAGTCTCCGAGAATCTTTTGCTCCCTATGGAGAAGTTCTTGATGGTAATTTTCTTTCTGACTCTCACTATCTACTAGTTATTCATCATTTCATATGGAGAAGTTCTTGATGGTAATTTTCTTTCTGCTCTCACTATCTACTAGTTATTCATCATTTCAGGTAGAGGTAATATGATTTTGGCTCCCATTATTTTTTGAGCGATCATTACCCTTTATGATTTGGTATTCCCCGTCCCAAATTTACGCTGACAGGACATCGTTTGTATCCAACTCTTATAGCTAATGTGGCTTTTCTTTAAAATTAAAAACGCCAAAAAGCACCAAAAGTTTGAAATTGCAATTAGAGATTTCATTTGCTCTCACCTATATGGGTTGATTTTTGGCATTTTTTTATATTTAATTTTATAGAAAGGCATGCTGGCTATGAGAATTGGATGTCACATTAATAAATGATAACTTCTAGCGAAAATTTGGAGGACTAGCAAATCACAATAACGGAAAACATAAGGGGATAAAATCGCTCAGAAAAAGTGGGGGCGAAAATAGCATAATCCTGATATCTGGGAGACCAAAAGTGCAATTAAGTCTTTTATATATGATTTGATAGATTGGTTACTTTGTTTTGATAAAAGATAATTTTCATTGAAAGTAAAGGTCACACAAAATTGATGGCTGTTATAAGCATATGCATTCCATAACATGGGGATTATTGATTTCTGCACTGAAACTTTCGTTTCTATTGTTCTTCCAGCAAGAGTTATCATCGACCGTGAACAAGGCAGGTCCAAAGGATTTGGCTTCGTAACTTTTGCAACAAGCGAGGAAGCATCTTCTGCCCTTCAGGCCATGGATAACAAGGTATTATCAGTTTTTATGATGATTCATCTTGTCGAGCATTCGAAAGATATACTCTCTTCGTCCTATAACAATTGGCATACTTGTTTATTTGATACAAGTTAAGGAAAAACTATTAGTGAAAGAAAGAGAATGGTAATTTTACGAAATTATCGTTGTTAAGCATTGATGTATTCACCATTATAATGAATGCAAAAAATATAATGATGACTTGGGAATAATGCACATAATATTAATTAGAGGGTTGTAGTTATTTTGAAAATCTGACACTTATTGTAGGATGGAGAGTAA
Protein sequence

>MS.gene44620.t1

MAFFGKMGKLLKNSAIKHINHDLSMSTPLAFQAIRSMSSAKLYVGGISYSTDDASLRESFAPYGEVLDARVIIDREQGRSKGFGFVTFATSEEASSALQAMDNKDGE