Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44874.t1 | XP_013467478.1 | 75.4 | 1204 | 283 | 2 | 1 | 1191 | 1 | 1204 | 0.00E+00 | 1538.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44874.t1 | Q56YN8 | 60.5 | 1203 | 461 | 2 | 1 | 1189 | 1 | 1203 | 0.0e+00 | 1260.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44874.t1 | A0A072VIT6 | 75.4 | 1204 | 283 | 2 | 1 | 1191 | 25 | 1228 | 0.0e+00 | 1538.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene036083 | MS.gene44874 | PPI |
| MS.gene024068 | MS.gene44874 | PPI |
| MS.gene016667 | MS.gene44874 | PPI |
| MS.gene44874 | MS.gene033508 | PPI |
| MS.gene44874 | MS.gene058789 | PPI |
| MS.gene44874 | MS.gene056169 | PPI |
| MS.gene45748 | MS.gene44874 | PPI |
| MS.gene95250 | MS.gene44874 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44874.t1 | MTR_1g051825 | 82.558 | 1204 | 197 | 2 | 1 | 1191 | 1 | 1204 | 0.0 | 1961 |
| MS.gene44874.t1 | MTR_1g051825 | 82.558 | 1204 | 197 | 2 | 1 | 1191 | 25 | 1228 | 0.0 | 1959 |
| MS.gene44874.t1 | MTR_3g110058 | 60.862 | 580 | 171 | 6 | 122 | 698 | 1 | 527 | 0.0 | 625 |
| MS.gene44874.t1 | MTR_3g110055 | 66.667 | 453 | 133 | 4 | 696 | 1130 | 2 | 454 | 0.0 | 546 |
| MS.gene44874.t1 | MTR_5g086975 | 52.030 | 271 | 56 | 5 | 233 | 503 | 50 | 246 | 2.39e-62 | 215 |
| MS.gene44874.t1 | MTR_8g037325 | 24.606 | 1268 | 734 | 41 | 1 | 1159 | 1 | 1155 | 3.28e-60 | 226 |
| MS.gene44874.t1 | MTR_8g072890 | 21.766 | 1314 | 796 | 43 | 1 | 1182 | 14 | 1227 | 3.67e-40 | 162 |
| MS.gene44874.t1 | MTR_5g087290 | 76.623 | 77 | 18 | 0 | 427 | 503 | 1 | 77 | 5.89e-30 | 115 |
| MS.gene44874.t1 | MTR_1g069910 | 23.554 | 709 | 377 | 31 | 523 | 1135 | 518 | 1157 | 8.89e-18 | 90.1 |
| MS.gene44874.t1 | MTR_7g091420 | 24.479 | 384 | 241 | 8 | 1 | 360 | 9 | 367 | 2.33e-15 | 80.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44874.t1 | AT2G27170 | 63.704 | 1204 | 423 | 2 | 1 | 1190 | 1 | 1204 | 0.0 | 1492 |
| MS.gene44874.t1 | AT2G27170 | 63.704 | 1204 | 423 | 2 | 1 | 1190 | 1 | 1204 | 0.0 | 1492 |
| MS.gene44874.t1 | AT2G27170 | 61.905 | 1050 | 393 | 1 | 1 | 1043 | 1 | 1050 | 0.0 | 1267 |
| MS.gene44874.t1 | AT2G27170 | 61.905 | 1050 | 393 | 1 | 1 | 1043 | 1 | 1050 | 0.0 | 1267 |
| MS.gene44874.t1 | AT5G62410 | 24.939 | 1231 | 776 | 45 | 1 | 1159 | 1 | 1155 | 1.72e-57 | 218 |
| MS.gene44874.t1 | AT3G47460 | 31.674 | 221 | 143 | 5 | 1 | 215 | 1 | 219 | 5.87e-28 | 123 |
| MS.gene44874.t1 | AT3G47460 | 31.674 | 221 | 143 | 5 | 1 | 215 | 1 | 219 | 6.51e-28 | 122 |
| MS.gene44874.t1 | AT3G54670 | 22.767 | 694 | 402 | 22 | 523 | 1135 | 519 | 1159 | 1.33e-17 | 89.4 |
| MS.gene44874.t1 | AT5G48600 | 23.182 | 220 | 130 | 5 | 948 | 1161 | 1033 | 1219 | 5.48e-12 | 71.2 |
| MS.gene44874.t1 | AT5G48600 | 23.182 | 220 | 130 | 5 | 948 | 1161 | 1030 | 1216 | 5.81e-12 | 70.9 |
Find 198 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAAATCTCAAAACATTTC+TGG | 0.160443 | 5.2:+59238458 | MS.gene44874:CDS |
| CCTTGTTGTACAACATAATA+TGG | 0.190231 | 5.2:-59232949 | None:intergenic |
| TTGAACTTCTTTGTTATATA+TGG | 0.195435 | 5.2:-59233728 | None:intergenic |
| CAAATTATTCTCCAGATCTT+TGG | 0.251481 | 5.2:-59235193 | None:intergenic |
| AAGAGTATACCAAGAAAATA+AGG | 0.255492 | 5.2:+59242504 | MS.gene44874:CDS |
| CCGGACAATTTGTTCGAAAA+AGG | 0.266191 | 5.2:+59232706 | MS.gene44874:CDS |
| ACAAGTGCTTTAGAAAATAA+TGG | 0.275883 | 5.2:-59241582 | None:intergenic |
| TGTTATATTATAGGTCCTTA+TGG | 0.278779 | 5.2:+59237428 | MS.gene44874:intron |
| TTACCAACACAGTTAACTTT+AGG | 0.286165 | 5.2:-59230970 | None:intergenic |
| TAAGCTGTTCAATCTGATTC+TGG | 0.295580 | 5.2:-59241750 | None:intergenic |
| ACTGTCAGCATTCTGCTTAA+TGG | 0.299928 | 5.2:-59240376 | None:intergenic |
| CAGATAGACCAAAAGGTTAA+TGG | 0.302621 | 5.2:+59241459 | MS.gene44874:intron |
| ACCTCCCGACAACTGCTTCA+TGG | 0.303146 | 5.2:-59245786 | None:intergenic |
| TTGGATTTACTGAAGGAAAT+AGG | 0.309154 | 5.2:+59233117 | MS.gene44874:CDS |
| AGAAATTGAAGGCCTTAAAA+AGG | 0.314098 | 5.2:+59241867 | MS.gene44874:CDS |
| TCAAAGATGAAATTAATAAA+TGG | 0.315740 | 5.2:+59242314 | MS.gene44874:CDS |
| CAGGTTAGCAACTCAATAAT+TGG | 0.323752 | 5.2:-59238491 | None:intergenic |
| AACAGTTATCTGCGAGAATC+TGG | 0.327910 | 5.2:+59240137 | MS.gene44874:CDS |
| CAAAACATTTCTGGAGTTCA+TGG | 0.331205 | 5.2:+59238467 | MS.gene44874:CDS |
| AATCATCTTAACCGACAAAA+AGG | 0.344747 | 5.2:+59238833 | MS.gene44874:CDS |
| TCCACAAATGCAGATAAAAC+TGG | 0.346018 | 5.2:-59231824 | None:intergenic |
| CAGACACAAAATGCTGATTA+AGG | 0.350936 | 5.2:+59246886 | MS.gene44874:CDS |
| TGATGAGATTGATGCTGCTT+TGG | 0.351240 | 5.2:+59245880 | MS.gene44874:CDS |
| AACTGAAGTGATGAATTTAC+TGG | 0.352491 | 5.2:+59232900 | MS.gene44874:CDS |
| CAGAGGCTTTCATCAAGGTT+AGG | 0.353698 | 5.2:-59233089 | None:intergenic |
| AAAGGTGTTGCTATGCATTT+CGG | 0.353997 | 5.2:+59243511 | MS.gene44874:CDS |
| TTTCAACATGTTCATTAAAC+AGG | 0.356991 | 5.2:+59230692 | None:intergenic |
| AAAAGAATCAATGGATGAAC+TGG | 0.368126 | 5.2:+59235498 | MS.gene44874:CDS |
| TACCAAGAAAATAAGGGAAC+TGG | 0.370065 | 5.2:+59242511 | MS.gene44874:CDS |
| CGAGTATAATAGAAAACTTC+AGG | 0.372965 | 5.2:+59242421 | MS.gene44874:CDS |
| AAAGTTGCCGACAAGATATA+TGG | 0.389830 | 5.2:+59246787 | MS.gene44874:CDS |
| TTCTAAAGCACTTGTAAAGA+AGG | 0.389908 | 5.2:+59241590 | MS.gene44874:CDS |
| TAGAACAAAGATTAATACTT+TGG | 0.393318 | 5.2:+59237247 | MS.gene44874:CDS |
| TCAGGAAGAAGCTAAAGAAT+TGG | 0.400137 | 5.2:+59242439 | MS.gene44874:CDS |
| TGCTCTAGAATTCATTAATC+AGG | 0.401763 | 5.2:+59246861 | MS.gene44874:CDS |
| AGAAGGAAAGAAAGCGGGGC+TGG | 0.412262 | 5.2:+59242002 | MS.gene44874:CDS |
| TTCTTTCTCCCTGCTCCATA+AGG | 0.418106 | 5.2:-59237443 | None:intergenic |
| TAAAGAATTGGAGCAATTGC+TGG | 0.419077 | 5.2:+59242451 | MS.gene44874:CDS |
| AGTCTCAATGATACAATTCC+TGG | 0.423849 | 5.2:+59237517 | MS.gene44874:CDS |
| AATATTCTCTGAACTTGTAC+AGG | 0.426667 | 5.2:+59243537 | MS.gene44874:CDS |
| CCCTTTGGCTTTGCTTCCCG+AGG | 0.427101 | 5.2:-59245084 | None:intergenic |
| AAAGTATAATTGATCGAAAC+GGG | 0.429552 | 5.2:+59242278 | MS.gene44874:CDS |
| TATAGATATGATCCGGCGCC+GGG | 0.432374 | 5.2:+59246711 | MS.gene44874:intron |
| GGAGATTGTTGATCTTGAAC+AGG | 0.433134 | 5.2:+59235934 | MS.gene44874:CDS |
| AGTCAAAGAGTCAGGAACTT+AGG | 0.433582 | 5.2:+59242118 | MS.gene44874:CDS |
| GAATCAGATTGAACAGCTTA+AGG | 0.440247 | 5.2:+59241753 | MS.gene44874:CDS |
| TGAACCAGACCATCATATAT+AGG | 0.445765 | 5.2:-59235532 | None:intergenic |
| AAGTATTAATCTTTGTTCTA+CGG | 0.445807 | 5.2:-59237244 | None:intergenic |
| TTGAAGTTACTGCAGGAAAC+AGG | 0.450106 | 5.2:+59238537 | MS.gene44874:CDS |
| ATTATAGGTCCTTATGGAGC+AGG | 0.451630 | 5.2:+59237434 | MS.gene44874:intron |
| AAAAGTATAATTGATCGAAA+CGG | 0.453681 | 5.2:+59242277 | MS.gene44874:CDS |
| TCGGCAACTTTCACTAGCTC+TGG | 0.455767 | 5.2:-59246775 | None:intergenic |
| CTACACTCCAGCTTTCAATC+AGG | 0.456099 | 5.2:+59238964 | MS.gene44874:CDS |
| AGGTGGTACTAGAGTTTATG+AGG | 0.456658 | 5.2:+59233137 | MS.gene44874:CDS |
| TCAAAAGCATCTGATGTCAA+TGG | 0.456925 | 5.2:-59242536 | None:intergenic |
| CAGTCCTATATATGATGGTC+TGG | 0.457209 | 5.2:+59235528 | MS.gene44874:CDS |
| CGCTGTATCACATCTCTGTA+TGG | 0.459501 | 5.2:-59245843 | None:intergenic |
| GGTAGCTCGTACCAATGGTT+TGG | 0.459742 | 5.2:+59240173 | MS.gene44874:CDS |
| GAGAAAATAATGAAAGATAC+AGG | 0.463056 | 5.2:+59233177 | MS.gene44874:CDS |
| AGAGTATACCAAGAAAATAA+GGG | 0.463899 | 5.2:+59242505 | MS.gene44874:CDS |
| GAAAGAAATAAAAGAATCAA+TGG | 0.466966 | 5.2:+59235489 | MS.gene44874:CDS |
| GCAGTTGGTGCTAATGGATC+TGG | 0.467644 | 5.2:+59231459 | MS.gene44874:intron |
| GAAGGAAAGAAAGCGGGGCT+GGG | 0.468286 | 5.2:+59242003 | MS.gene44874:CDS |
| CTTCTAAATACTGTACAACT+TGG | 0.471180 | 5.2:-59233621 | None:intergenic |
| GAACTTGTACAGGGCGGCTA+TGG | 0.472971 | 5.2:+59243547 | MS.gene44874:CDS |
| TAATACTTTGGAATTTCAAA+CGG | 0.473321 | 5.2:+59237259 | MS.gene44874:CDS |
| AGAGGCTTTCATCAAGGTTA+GGG | 0.474689 | 5.2:-59233088 | None:intergenic |
| TTCTCTTCACAGGAAGGGGC+TGG | 0.475306 | 5.2:+59231797 | MS.gene44874:intron |
| GTCAAAGAGTCAGGAACTTA+GGG | 0.476269 | 5.2:+59242119 | MS.gene44874:CDS |
| ATTCAACCCTTCACGTGACT+TGG | 0.477319 | 5.2:-59237282 | None:intergenic |
| TTGCTATGTCTGCCCGGCGC+CGG | 0.478684 | 5.2:-59246723 | None:intergenic |
| ACAGGGCGGCTATGGTCATC+TGG | 0.479869 | 5.2:+59243555 | MS.gene44874:CDS |
| GATGAAAGCCTCTGAGCGAT+TGG | 0.480648 | 5.2:+59233098 | MS.gene44874:CDS |
| AAATTCAATTTCTTTAAAAG+AGG | 0.482439 | 5.2:-59238932 | None:intergenic |
| AGTCCTAAAGTTAACTGTGT+TGG | 0.484406 | 5.2:+59230967 | MS.gene44874:CDS |
| CAGTCCATGAAGCAGTTGTC+GGG | 0.486486 | 5.2:+59245782 | MS.gene44874:CDS |
| TGACAAGCAGAGAAAATCCT+TGG | 0.487457 | 5.2:+59233699 | MS.gene44874:CDS |
| GGAGCATTTACTCTGTTAAG+TGG | 0.489316 | 5.2:-59238875 | None:intergenic |
| TGTCACTCCATATATCTTGT+CGG | 0.495905 | 5.2:-59246794 | None:intergenic |
| ACATGAGAAATCCAAAGATC+TGG | 0.499595 | 5.2:+59235182 | MS.gene44874:CDS |
| GTTATATATGGCATATTCCA+AGG | 0.501813 | 5.2:-59233716 | None:intergenic |
| CAAAAGCATCTGATGTCAAT+GGG | 0.501917 | 5.2:-59242535 | None:intergenic |
| TTCTAACTATAGATATGATC+CGG | 0.503272 | 5.2:+59246704 | MS.gene44874:intron |
| TGATGCCGAGTCAAAGAGTC+AGG | 0.503666 | 5.2:+59242110 | MS.gene44874:CDS |
| TGTTGATACTTCAGAAACCT+TGG | 0.504387 | 5.2:-59235133 | None:intergenic |
| CAGGAGAAGAAAACAAGAGC+TGG | 0.505253 | 5.2:+59242047 | MS.gene44874:CDS |
| ACTTAGGGATGCTAAAGGAT+TGG | 0.507728 | 5.2:+59242134 | MS.gene44874:CDS |
| TCGTGATCAGTGGCTTCAAA+AGG | 0.510625 | 5.2:+59235913 | MS.gene44874:CDS |
| TCGCTCAGAGGCTTTCATCA+AGG | 0.512814 | 5.2:-59233094 | None:intergenic |
| CTAATCTAACCACTAATCTC+AGG | 0.517505 | 5.2:+59242028 | MS.gene44874:CDS |
| AAAATCAGTCCTATATATGA+TGG | 0.518190 | 5.2:+59235523 | MS.gene44874:CDS |
| TCACATCAAAGAGGAGGACT+TGG | 0.518359 | 5.2:+59240401 | MS.gene44874:CDS |
| GAAGAGGGTTGAATACAGTT+CGG | 0.518730 | 5.2:+59238429 | MS.gene44874:CDS |
| GGAACTAGATGAGGAGAAAG+AGG | 0.520899 | 5.2:+59233654 | MS.gene44874:CDS |
| GACTGGAACCAAGAAATTGA+AGG | 0.524170 | 5.2:+59241856 | MS.gene44874:CDS |
| GGTCTCACAGATAGACCAAA+AGG | 0.525758 | 5.2:+59241452 | MS.gene44874:intron |
| ATGAATTTACTGGAAAGTGC+TGG | 0.527499 | 5.2:+59232910 | MS.gene44874:CDS |
| CTATAGATATGATCCGGCGC+CGG | 0.528979 | 5.2:+59246710 | MS.gene44874:intron |
| AAGCTAACCTGATTGAAAGC+TGG | 0.529389 | 5.2:-59238971 | None:intergenic |
| TTGCAAGAATGATCGTATTG+AGG | 0.530772 | 5.2:+59241900 | MS.gene44874:CDS |
| GAATCTGGATGTGGCTTCAA+AGG | 0.530946 | 5.2:+59240152 | MS.gene44874:CDS |
| ACTGCAGTTGAAGTTACTGC+AGG | 0.531496 | 5.2:+59238530 | MS.gene44874:CDS |
| TCAATAGAACGCACTTTCAA+AGG | 0.535025 | 5.2:+59243493 | MS.gene44874:CDS |
| AGAACTTACGCAGTGAGGAT+AGG | 0.537005 | 5.2:+59231663 | MS.gene44874:CDS |
| TCAATTTCTTTAAAAGAGGT+AGG | 0.537527 | 5.2:-59238928 | None:intergenic |
| CAGAAAGAAGGAAAGAAAGC+GGG | 0.540155 | 5.2:+59241997 | MS.gene44874:intron |
| TTTATGATCACAGACGATCA+AGG | 0.543698 | 5.2:+59240337 | MS.gene44874:CDS |
| TGAACTTGATGCAGGAAAAG+AGG | 0.544149 | 5.2:+59242999 | MS.gene44874:CDS |
| AGATATCACATTAACACGGC+TGG | 0.547116 | 5.2:-59246830 | None:intergenic |
| ACAGTCCATGAAGCAGTTGT+CGG | 0.548490 | 5.2:+59245781 | MS.gene44874:CDS |
| CAGAGATAGAAGAGCTTAAG+CGG | 0.550591 | 5.2:+59241532 | MS.gene44874:CDS |
| ATCAAGACAAGGATAGCCCT+CGG | 0.552296 | 5.2:+59245067 | MS.gene44874:CDS |
| CCATATTATGTTGTACAACA+AGG | 0.554517 | 5.2:+59232949 | MS.gene44874:CDS |
| AGACAAGCTGAACTTGATGC+AGG | 0.558384 | 5.2:+59242991 | MS.gene44874:CDS |
| TGAGCGATTGGATTTACTGA+AGG | 0.561514 | 5.2:+59233110 | MS.gene44874:CDS |
| CAGGAACTTAGGGATGCTAA+AGG | 0.564377 | 5.2:+59242129 | MS.gene44874:CDS |
| CCACAAATGCAGATAAAACT+GGG | 0.565032 | 5.2:-59231823 | None:intergenic |
| ATCAACAAAGAAGTATAATG+AGG | 0.570587 | 5.2:+59235149 | MS.gene44874:CDS |
| GCTCTCTTCAAACACGGCAC+AGG | 0.572042 | 5.2:+59235958 | MS.gene44874:CDS |
| ACTGAGAGCAGAAGTTGAGA+AGG | 0.575102 | 5.2:+59237486 | MS.gene44874:CDS |
| TCAAAGGTAGCTCGTACCAA+TGG | 0.575939 | 5.2:+59240168 | MS.gene44874:CDS |
| TTCTAAATACTGTACAACTT+GGG | 0.576033 | 5.2:-59233620 | None:intergenic |
| CAAACGGCCAAGTCACGTGA+AGG | 0.576112 | 5.2:+59237275 | MS.gene44874:CDS |
| CCTCCGTGGCAATTTGCTCT+CGG | 0.576502 | 5.2:-59230939 | None:intergenic |
| CCTCGGGAAGCAAAGCCAAA+GGG | 0.577969 | 5.2:+59245084 | MS.gene44874:CDS |
| TTGGACTGCATAACACTGGA+AGG | 0.580092 | 5.2:+59240192 | MS.gene44874:CDS |
| GAGTGTTTGCTATGTCTGCC+CGG | 0.581179 | 5.2:-59246729 | None:intergenic |
| TTGTACAGTATTTAGAAGAG+AGG | 0.585238 | 5.2:+59233626 | MS.gene44874:CDS |
| TCTGTGATCATAAAATCCTC+CGG | 0.586231 | 5.2:-59240328 | None:intergenic |
| GGGAGAGTAGAAAACTACAT+TGG | 0.588863 | 5.2:+59245105 | MS.gene44874:CDS |
| TGTTATGCAGTCCAAACCAT+TGG | 0.589083 | 5.2:-59240184 | None:intergenic |
| ACCAAGAAAATAAGGGAACT+GGG | 0.589324 | 5.2:+59242512 | MS.gene44874:CDS |
| CCCTCGGGAAGCAAAGCCAA+AGG | 0.589705 | 5.2:+59245083 | MS.gene44874:CDS |
| CCTTTGGCTTTGCTTCCCGA+GGG | 0.589978 | 5.2:-59245083 | None:intergenic |
| TAATTTGAAAGATATAATGA+AGG | 0.590282 | 5.2:+59235209 | MS.gene44874:CDS |
| TATTTGGCTGCAGTCTCTGG+AGG | 0.594949 | 5.2:+59242397 | MS.gene44874:intron |
| AGTATTCTCTATCAAAAGCA+AGG | 0.597708 | 5.2:+59235860 | MS.gene44874:CDS |
| GCTGATGATGACTCTTTGCA+TGG | 0.599425 | 5.2:+59242087 | MS.gene44874:CDS |
| TCATCTGGATATGATGAAGA+AGG | 0.600551 | 5.2:+59243570 | MS.gene44874:CDS |
| TATCTGCGAGAATCTGGATG+TGG | 0.602318 | 5.2:+59240143 | MS.gene44874:CDS |
| TGAATTTACTGGAAAGTGCT+GGG | 0.602515 | 5.2:+59232911 | MS.gene44874:CDS |
| ATATGCAGGATGTTAGAAGA+GGG | 0.603171 | 5.2:+59238414 | MS.gene44874:intron |
| GAAACGGTCTTCTTGATGAG+AGG | 0.605497 | 5.2:+59237321 | MS.gene44874:CDS |
| AGAGATAGAAGAGCTTAAGC+GGG | 0.605946 | 5.2:+59241533 | MS.gene44874:CDS |
| TTATGTTGTACAACAAGGAA+AGG | 0.607085 | 5.2:+59232954 | MS.gene44874:CDS |
| TGAAATGCGTGGCTGTGATA+CGG | 0.607154 | 5.2:+59237211 | MS.gene44874:CDS |
| TTATAGGTCCTTATGGAGCA+GGG | 0.607493 | 5.2:+59237435 | MS.gene44874:intron |
| GTAAAGCTGCTCGTGATCAG+TGG | 0.610771 | 5.2:+59235903 | MS.gene44874:CDS |
| TCAAGACAAGGATAGCCCTC+GGG | 0.615040 | 5.2:+59245068 | MS.gene44874:CDS |
| AGATGAAATTAATAAATGGA+AGG | 0.616624 | 5.2:+59242318 | MS.gene44874:CDS |
| GTATGGCAAAGATAAGTGCA+AGG | 0.617710 | 5.2:-59245826 | None:intergenic |
| GAGGCTGAAGGAACTAGATG+AGG | 0.617909 | 5.2:+59233645 | MS.gene44874:CDS |
| TGCTCAGCTAAAGCTTGCAG+AGG | 0.618147 | 5.2:+59233753 | MS.gene44874:CDS |
| AAGTTCCTGACTCTTTGACT+CGG | 0.619980 | 5.2:-59242115 | None:intergenic |
| ATCACTCAACACGAAACGAA+TGG | 0.624342 | 5.2:-59231633 | None:intergenic |
| TAATTCAGACAATCGTATCC+CGG | 0.625351 | 5.2:+59231859 | MS.gene44874:CDS |
| TGGTTTGGACTGCATAACAC+TGG | 0.626774 | 5.2:+59240188 | MS.gene44874:CDS |
| AACAGTGCTAGATCAACAGA+AGG | 0.627814 | 5.2:+59243465 | MS.gene44874:CDS |
| CCACAGTACAGAACTGCCGT+TGG | 0.630949 | 5.2:+59245905 | MS.gene44874:CDS |
| AAACGGCCAAGTCACGTGAA+GGG | 0.631549 | 5.2:+59237276 | MS.gene44874:CDS |
| CATTGACCATTTAACGCCAG+AGG | 0.631987 | 5.2:+59241816 | MS.gene44874:CDS |
| GTACTAGAGTTTATGAGGAG+AGG | 0.632212 | 5.2:+59233142 | MS.gene44874:CDS |
| CTCTGTGGATAAGTGATGCG+TGG | 0.632709 | 5.2:-59238896 | None:intergenic |
| CTCGGGAAGCAAAGCCAAAG+GGG | 0.634172 | 5.2:+59245085 | MS.gene44874:CDS |
| GAGAAGAAAACAAGAGCTGG+AGG | 0.634923 | 5.2:+59242050 | MS.gene44874:CDS |
| CAGTAAATCCAATCGCTCAG+AGG | 0.636170 | 5.2:-59233106 | None:intergenic |
| TAGAATCATGAAGCACGAGA+AGG | 0.636405 | 5.2:+59235832 | MS.gene44874:intron |
| TTGCTTAATGTTGAAATGCG+TGG | 0.638129 | 5.2:+59237200 | MS.gene44874:CDS |
| AATATGCAGGATGTTAGAAG+AGG | 0.640786 | 5.2:+59238413 | MS.gene44874:intron |
| CAACTTTCACTAGCTCTGGA+CGG | 0.648302 | 5.2:-59246771 | None:intergenic |
| CTGTGAATAGGTTGACAAGG+AGG | 0.648630 | 5.2:+59232670 | MS.gene44874:intron |
| CTTTCAGAACTTACGCAGTG+AGG | 0.651455 | 5.2:+59231658 | MS.gene44874:CDS |
| TCCATGAAGCAGTTGTCGGG+AGG | 0.652613 | 5.2:+59245785 | MS.gene44874:CDS |
| GTATTTAGAAGAGAGGCTGA+AGG | 0.652631 | 5.2:+59233633 | MS.gene44874:CDS |
| AGGAGGAAGTGCACTTACGC+CGG | 0.654057 | 5.2:+59232687 | MS.gene44874:CDS |
| CTACATTGGAGTGAAAGTGA+AGG | 0.657266 | 5.2:+59245119 | MS.gene44874:CDS |
| TATGGCAAAGATAAGTGCAA+GGG | 0.657792 | 5.2:-59245825 | None:intergenic |
| ATATTCTCTGAACTTGTACA+GGG | 0.659628 | 5.2:+59243538 | MS.gene44874:CDS |
| GCAGAAAGAAGGAAAGAAAG+CGG | 0.659893 | 5.2:+59241996 | MS.gene44874:intron |
| TCTCAGTTTATCAATTTCAG+CGG | 0.660174 | 5.2:-59237470 | None:intergenic |
| GATCATTCTTGCAAGCAACA+AGG | 0.666516 | 5.2:-59241891 | None:intergenic |
| TTACCGAGAGCAAATTGCCA+CGG | 0.669011 | 5.2:+59230936 | MS.gene44874:CDS |
| CAGTATTCACATCAAAGAGG+AGG | 0.672571 | 5.2:+59240395 | MS.gene44874:CDS |
| GGTTGTTGAAAATGATGACA+AGG | 0.678450 | 5.2:+59238796 | MS.gene44874:CDS |
| CCGAGAGCAAATTGCCACGG+AGG | 0.678977 | 5.2:+59230939 | MS.gene44874:CDS |
| CCAACGGCAGTTCTGTACTG+TGG | 0.684386 | 5.2:-59245905 | None:intergenic |
| ACAGGTGCTCTCTTCAAACA+CGG | 0.686036 | 5.2:+59235952 | MS.gene44874:CDS |
| GATTTACTGAAGGAAATAGG+TGG | 0.687534 | 5.2:+59233120 | MS.gene44874:CDS |
| TGACAGTATTCACATCAAAG+AGG | 0.689556 | 5.2:+59240392 | MS.gene44874:CDS |
| TTCTCTGAACTTGTACAGGG+CGG | 0.695410 | 5.2:+59243541 | MS.gene44874:CDS |
| TTAGGATGATGATCAAGACA+AGG | 0.697149 | 5.2:+59245056 | MS.gene44874:intron |
| CTTGTAGGAGAAATCGCGTG+AGG | 0.698612 | 5.2:+59241723 | MS.gene44874:intron |
| AGAAAGAAGGAAAGAAAGCG+GGG | 0.698971 | 5.2:+59241998 | MS.gene44874:intron |
| TGTCTGTGAATAGGTTGACA+AGG | 0.707821 | 5.2:+59232667 | MS.gene44874:intron |
| GGTAGGATATCAGAACTCTG+TGG | 0.710062 | 5.2:-59238911 | None:intergenic |
| GACATGATAGGTACAAACAG+AGG | 0.718579 | 5.2:+59242842 | MS.gene44874:intron |
| TCTCAGATATCACATTAACA+CGG | 0.733641 | 5.2:-59246834 | None:intergenic |
| TTTAGGACTGAAATCCTCCG+TGG | 0.739596 | 5.2:-59230953 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 59230699 | 59246906 | 59230699 | ID=MS.gene44874 |
| chr5.2 | mRNA | 59230699 | 59246906 | 59230699 | ID=MS.gene44874.t1;Parent=MS.gene44874 |
| chr5.2 | exon | 59230699 | 59230713 | 59230699 | ID=MS.gene44874.t1.exon1;Parent=MS.gene44874.t1 |
| chr5.2 | CDS | 59230699 | 59230713 | 59230699 | ID=cds.MS.gene44874.t1;Parent=MS.gene44874.t1 |
| chr5.2 | exon | 59230913 | 59230988 | 59230913 | ID=MS.gene44874.t1.exon2;Parent=MS.gene44874.t1 |
| chr5.2 | CDS | 59230913 | 59230988 | 59230913 | ID=cds.MS.gene44874.t1;Parent=MS.gene44874.t1 |
| chr5.2 | exon | 59231463 | 59231501 | 59231463 | ID=MS.gene44874.t1.exon3;Parent=MS.gene44874.t1 |
| chr5.2 | CDS | 59231463 | 59231501 | 59231463 | ID=cds.MS.gene44874.t1;Parent=MS.gene44874.t1 |
| chr5.2 | exon | 59231633 | 59231700 | 59231633 | ID=MS.gene44874.t1.exon4;Parent=MS.gene44874.t1 |
| chr5.2 | CDS | 59231633 | 59231700 | 59231633 | ID=cds.MS.gene44874.t1;Parent=MS.gene44874.t1 |
| chr5.2 | exon | 59231809 | 59231880 | 59231809 | ID=MS.gene44874.t1.exon5;Parent=MS.gene44874.t1 |
| chr5.2 | CDS | 59231809 | 59231880 | 59231809 | ID=cds.MS.gene44874.t1;Parent=MS.gene44874.t1 |
| chr5.2 | exon | 59232680 | 59232759 | 59232680 | ID=MS.gene44874.t1.exon6;Parent=MS.gene44874.t1 |
| chr5.2 | CDS | 59232680 | 59232759 | 59232680 | ID=cds.MS.gene44874.t1;Parent=MS.gene44874.t1 |
| chr5.2 | exon | 59232897 | 59232975 | 59232897 | ID=MS.gene44874.t1.exon7;Parent=MS.gene44874.t1 |
| chr5.2 | CDS | 59232897 | 59232975 | 59232897 | ID=cds.MS.gene44874.t1;Parent=MS.gene44874.t1 |
| chr5.2 | exon | 59233081 | 59233198 | 59233081 | ID=MS.gene44874.t1.exon8;Parent=MS.gene44874.t1 |
| chr5.2 | CDS | 59233081 | 59233198 | 59233081 | ID=cds.MS.gene44874.t1;Parent=MS.gene44874.t1 |
| chr5.2 | exon | 59233599 | 59233774 | 59233599 | ID=MS.gene44874.t1.exon9;Parent=MS.gene44874.t1 |
| chr5.2 | CDS | 59233599 | 59233774 | 59233599 | ID=cds.MS.gene44874.t1;Parent=MS.gene44874.t1 |
| chr5.2 | exon | 59235117 | 59235362 | 59235117 | ID=MS.gene44874.t1.exon10;Parent=MS.gene44874.t1 |
| chr5.2 | CDS | 59235117 | 59235362 | 59235117 | ID=cds.MS.gene44874.t1;Parent=MS.gene44874.t1 |
| chr5.2 | exon | 59235457 | 59235578 | 59235457 | ID=MS.gene44874.t1.exon11;Parent=MS.gene44874.t1 |
| chr5.2 | CDS | 59235457 | 59235578 | 59235457 | ID=cds.MS.gene44874.t1;Parent=MS.gene44874.t1 |
| chr5.2 | exon | 59235835 | 59235979 | 59235835 | ID=MS.gene44874.t1.exon12;Parent=MS.gene44874.t1 |
| chr5.2 | CDS | 59235835 | 59235979 | 59235835 | ID=cds.MS.gene44874.t1;Parent=MS.gene44874.t1 |
| chr5.2 | exon | 59237173 | 59237345 | 59237173 | ID=MS.gene44874.t1.exon13;Parent=MS.gene44874.t1 |
| chr5.2 | CDS | 59237173 | 59237345 | 59237173 | ID=cds.MS.gene44874.t1;Parent=MS.gene44874.t1 |
| chr5.2 | exon | 59237441 | 59237540 | 59237441 | ID=MS.gene44874.t1.exon14;Parent=MS.gene44874.t1 |
| chr5.2 | CDS | 59237441 | 59237540 | 59237441 | ID=cds.MS.gene44874.t1;Parent=MS.gene44874.t1 |
| chr5.2 | exon | 59238422 | 59238558 | 59238422 | ID=MS.gene44874.t1.exon15;Parent=MS.gene44874.t1 |
| chr5.2 | CDS | 59238422 | 59238558 | 59238422 | ID=cds.MS.gene44874.t1;Parent=MS.gene44874.t1 |
| chr5.2 | exon | 59238784 | 59238985 | 59238784 | ID=MS.gene44874.t1.exon16;Parent=MS.gene44874.t1 |
| chr5.2 | CDS | 59238784 | 59238985 | 59238784 | ID=cds.MS.gene44874.t1;Parent=MS.gene44874.t1 |
| chr5.2 | exon | 59240126 | 59240213 | 59240126 | ID=MS.gene44874.t1.exon17;Parent=MS.gene44874.t1 |
| chr5.2 | CDS | 59240126 | 59240213 | 59240126 | ID=cds.MS.gene44874.t1;Parent=MS.gene44874.t1 |
| chr5.2 | exon | 59240298 | 59240428 | 59240298 | ID=MS.gene44874.t1.exon18;Parent=MS.gene44874.t1 |
| chr5.2 | CDS | 59240298 | 59240428 | 59240298 | ID=cds.MS.gene44874.t1;Parent=MS.gene44874.t1 |
| chr5.2 | exon | 59241462 | 59241611 | 59241462 | ID=MS.gene44874.t1.exon19;Parent=MS.gene44874.t1 |
| chr5.2 | CDS | 59241462 | 59241611 | 59241462 | ID=cds.MS.gene44874.t1;Parent=MS.gene44874.t1 |
| chr5.2 | exon | 59241730 | 59241921 | 59241730 | ID=MS.gene44874.t1.exon20;Parent=MS.gene44874.t1 |
| chr5.2 | CDS | 59241730 | 59241921 | 59241730 | ID=cds.MS.gene44874.t1;Parent=MS.gene44874.t1 |
| chr5.2 | exon | 59242000 | 59242183 | 59242000 | ID=MS.gene44874.t1.exon21;Parent=MS.gene44874.t1 |
| chr5.2 | CDS | 59242000 | 59242183 | 59242000 | ID=cds.MS.gene44874.t1;Parent=MS.gene44874.t1 |
| chr5.2 | exon | 59242269 | 59242339 | 59242269 | ID=MS.gene44874.t1.exon22;Parent=MS.gene44874.t1 |
| chr5.2 | CDS | 59242269 | 59242339 | 59242269 | ID=cds.MS.gene44874.t1;Parent=MS.gene44874.t1 |
| chr5.2 | exon | 59242410 | 59242561 | 59242410 | ID=MS.gene44874.t1.exon23;Parent=MS.gene44874.t1 |
| chr5.2 | CDS | 59242410 | 59242561 | 59242410 | ID=cds.MS.gene44874.t1;Parent=MS.gene44874.t1 |
| chr5.2 | exon | 59242852 | 59243020 | 59242852 | ID=MS.gene44874.t1.exon24;Parent=MS.gene44874.t1 |
| chr5.2 | CDS | 59242852 | 59243020 | 59242852 | ID=cds.MS.gene44874.t1;Parent=MS.gene44874.t1 |
| chr5.2 | exon | 59243448 | 59243591 | 59243448 | ID=MS.gene44874.t1.exon25;Parent=MS.gene44874.t1 |
| chr5.2 | CDS | 59243448 | 59243591 | 59243448 | ID=cds.MS.gene44874.t1;Parent=MS.gene44874.t1 |
| chr5.2 | exon | 59245060 | 59245140 | 59245060 | ID=MS.gene44874.t1.exon26;Parent=MS.gene44874.t1 |
| chr5.2 | CDS | 59245060 | 59245140 | 59245060 | ID=cds.MS.gene44874.t1;Parent=MS.gene44874.t1 |
| chr5.2 | exon | 59245755 | 59245929 | 59245755 | ID=MS.gene44874.t1.exon27;Parent=MS.gene44874.t1 |
| chr5.2 | CDS | 59245755 | 59245929 | 59245755 | ID=cds.MS.gene44874.t1;Parent=MS.gene44874.t1 |
| chr5.2 | exon | 59246716 | 59246906 | 59246716 | ID=MS.gene44874.t1.exon28;Parent=MS.gene44874.t1 |
| chr5.2 | CDS | 59246716 | 59246906 | 59246716 | ID=cds.MS.gene44874.t1;Parent=MS.gene44874.t1 |
| Gene Sequence |
| Protein sequence |
