Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene44930.t1 | XP_003629580.1 | 99.7 | 360 | 1 | 0 | 1 | 360 | 1 | 360 | 1.00E-208 | 735.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene44930.t1 | Q9C566 | 71.1 | 360 | 103 | 1 | 1 | 359 | 1 | 360 | 6.8e-153 | 541.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene44930.t1 | G7LGD2 | 99.7 | 360 | 1 | 0 | 1 | 360 | 1 | 360 | 7.3e-209 | 735.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050134 | MS.gene44930 | 0.804801 | 1.81E-49 | -1.69E-46 |
MS.gene052209 | MS.gene44930 | 0.802195 | 6.30E-49 | -1.69E-46 |
MS.gene052664 | MS.gene44930 | 0.811697 | 6.15E-51 | -1.69E-46 |
MS.gene054662 | MS.gene44930 | 0.824253 | 8.92E-54 | -1.69E-46 |
MS.gene057367 | MS.gene44930 | 0.800975 | 1.12E-48 | -1.69E-46 |
MS.gene06093 | MS.gene44930 | 0.806348 | 8.59E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene44930.t1 | MTR_8g079690 | 99.722 | 360 | 1 | 0 | 1 | 360 | 1 | 360 | 0.0 | 742 |
MS.gene44930.t1 | MTR_4g086760 | 73.961 | 361 | 93 | 1 | 1 | 360 | 1 | 361 | 0.0 | 566 |
MS.gene44930.t1 | MTR_4g086760 | 74.096 | 332 | 85 | 1 | 1 | 331 | 1 | 332 | 0.0 | 525 |
MS.gene44930.t1 | MTR_4g086760 | 73.567 | 314 | 82 | 1 | 1 | 313 | 1 | 314 | 1.38e-175 | 490 |
MS.gene44930.t1 | MTR_7g116340 | 63.429 | 175 | 60 | 3 | 1 | 174 | 1 | 172 | 6.90e-71 | 219 |
MS.gene44930.t1 | MTR_7g095750 | 60.773 | 181 | 68 | 2 | 3 | 182 | 6 | 184 | 1.55e-69 | 229 |
MS.gene44930.t1 | MTR_4g075290 | 61.143 | 175 | 64 | 3 | 1 | 174 | 1 | 172 | 1.86e-69 | 215 |
MS.gene44930.t1 | MTR_3g463900 | 60.355 | 169 | 65 | 2 | 5 | 173 | 35 | 201 | 2.70e-64 | 203 |
MS.gene44930.t1 | MTR_3g070500 | 58.480 | 171 | 69 | 2 | 5 | 175 | 65 | 233 | 1.13e-63 | 202 |
MS.gene44930.t1 | MTR_3g117750 | 58.140 | 172 | 68 | 3 | 5 | 175 | 13 | 181 | 2.07e-63 | 201 |
MS.gene44930.t1 | MTR_1g117010 | 57.558 | 172 | 62 | 2 | 5 | 173 | 78 | 241 | 3.57e-61 | 197 |
MS.gene44930.t1 | MTR_1g117010 | 57.558 | 172 | 62 | 2 | 5 | 173 | 78 | 241 | 3.57e-61 | 197 |
MS.gene44930.t1 | MTR_7g110980 | 55.030 | 169 | 68 | 1 | 5 | 173 | 97 | 257 | 9.69e-60 | 193 |
MS.gene44930.t1 | MTR_1g085560 | 57.647 | 170 | 63 | 2 | 5 | 173 | 86 | 247 | 1.97e-59 | 192 |
MS.gene44930.t1 | MTR_4g073650 | 56.805 | 169 | 72 | 1 | 5 | 173 | 47 | 214 | 3.43e-59 | 191 |
MS.gene44930.t1 | MTR_8g040180 | 55.233 | 172 | 73 | 2 | 3 | 173 | 17 | 185 | 3.14e-58 | 187 |
MS.gene44930.t1 | MTR_3g070500 | 64.228 | 123 | 43 | 1 | 5 | 127 | 65 | 186 | 7.30e-50 | 166 |
MS.gene44930.t1 | MTR_3g107660 | 47.500 | 200 | 100 | 3 | 3 | 201 | 9 | 204 | 2.57e-46 | 169 |
MS.gene44930.t1 | MTR_1g011980 | 49.708 | 171 | 82 | 3 | 6 | 175 | 9 | 176 | 2.53e-43 | 160 |
MS.gene44930.t1 | MTR_8g036015 | 49.664 | 149 | 62 | 3 | 18 | 165 | 10 | 146 | 8.95e-40 | 138 |
MS.gene44930.t1 | MTR_2g085075 | 50.000 | 154 | 64 | 3 | 18 | 170 | 471 | 612 | 4.58e-38 | 144 |
MS.gene44930.t1 | MTR_3g070500 | 63.542 | 96 | 34 | 1 | 5 | 100 | 65 | 159 | 1.03e-36 | 130 |
MS.gene44930.t1 | MTR_3g070500 | 62.000 | 100 | 37 | 1 | 5 | 104 | 65 | 163 | 1.04e-36 | 130 |
MS.gene44930.t1 | MTR_7g105220 | 44.242 | 165 | 74 | 5 | 4 | 167 | 10 | 157 | 6.17e-36 | 129 |
MS.gene44930.t1 | MTR_5g015500 | 40.102 | 197 | 83 | 6 | 18 | 213 | 314 | 476 | 3.10e-32 | 127 |
MS.gene44930.t1 | MTR_5g015500 | 40.102 | 197 | 83 | 6 | 18 | 213 | 354 | 516 | 4.84e-32 | 127 |
MS.gene44930.t1 | MTR_2g023120 | 43.919 | 148 | 66 | 6 | 18 | 161 | 22 | 156 | 2.41e-22 | 98.6 |
MS.gene44930.t1 | MTR_3g085705 | 52.273 | 88 | 38 | 2 | 64 | 151 | 32 | 115 | 5.63e-21 | 87.8 |
MS.gene44930.t1 | MTR_6g084140 | 34.591 | 159 | 83 | 5 | 18 | 167 | 10 | 156 | 1.28e-17 | 84.7 |
MS.gene44930.t1 | MTR_6g084140 | 34.591 | 159 | 83 | 5 | 18 | 167 | 27 | 173 | 1.59e-17 | 84.3 |
MS.gene44930.t1 | MTR_8g080980 | 35.366 | 164 | 96 | 4 | 203 | 359 | 383 | 543 | 5.19e-17 | 82.8 |
MS.gene44930.t1 | MTR_8g012340 | 34.965 | 143 | 89 | 3 | 219 | 360 | 409 | 548 | 1.40e-16 | 81.3 |
MS.gene44930.t1 | MTR_8g442420 | 33.962 | 159 | 84 | 5 | 18 | 167 | 10 | 156 | 1.42e-16 | 81.3 |
MS.gene44930.t1 | MTR_7g053470 | 33.333 | 174 | 105 | 5 | 194 | 359 | 369 | 539 | 2.99e-15 | 77.4 |
MS.gene44930.t1 | MTR_1g094065 | 33.758 | 157 | 81 | 7 | 17 | 170 | 88 | 224 | 7.99e-14 | 70.5 |
MS.gene44930.t1 | MTR_1g035360 | 31.818 | 154 | 89 | 4 | 17 | 170 | 87 | 224 | 1.67e-12 | 66.6 |
MS.gene44930.t1 | MTR_1g017870 | 32.164 | 171 | 92 | 6 | 203 | 359 | 381 | 541 | 9.59e-12 | 66.6 |
MS.gene44930.t1 | MTR_1g017870 | 32.164 | 171 | 92 | 6 | 203 | 359 | 381 | 541 | 1.01e-11 | 66.6 |
MS.gene44930.t1 | MTR_1g017870 | 32.164 | 171 | 92 | 6 | 203 | 359 | 357 | 517 | 1.61e-11 | 65.9 |
MS.gene44930.t1 | MTR_1g017870 | 31.818 | 176 | 96 | 6 | 198 | 359 | 166 | 331 | 1.63e-11 | 65.1 |
MS.gene44930.t1 | MTR_1g017870 | 31.818 | 176 | 96 | 6 | 198 | 359 | 250 | 415 | 1.78e-11 | 65.5 |
MS.gene44930.t1 | MTR_1g017870 | 31.818 | 176 | 96 | 6 | 198 | 359 | 166 | 331 | 2.00e-11 | 65.1 |
MS.gene44930.t1 | MTR_1g017870 | 31.818 | 176 | 96 | 6 | 198 | 359 | 250 | 415 | 2.30e-11 | 65.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene44930.t1 | AT2G15790 | 71.111 | 360 | 103 | 1 | 1 | 359 | 1 | 360 | 0.0 | 545 |
MS.gene44930.t1 | AT3G63400 | 66.667 | 174 | 55 | 2 | 3 | 175 | 6 | 177 | 3.08e-75 | 238 |
MS.gene44930.t1 | AT3G63400 | 66.667 | 174 | 55 | 2 | 3 | 175 | 6 | 177 | 2.99e-73 | 238 |
MS.gene44930.t1 | AT3G63400 | 66.667 | 174 | 55 | 2 | 3 | 175 | 6 | 177 | 2.99e-73 | 238 |
MS.gene44930.t1 | AT3G63400 | 66.667 | 174 | 55 | 2 | 3 | 175 | 6 | 177 | 2.99e-73 | 238 |
MS.gene44930.t1 | AT4G34870 | 62.857 | 175 | 61 | 3 | 1 | 174 | 1 | 172 | 3.50e-71 | 220 |
MS.gene44930.t1 | AT2G16600 | 63.006 | 173 | 60 | 3 | 3 | 174 | 4 | 173 | 5.52e-71 | 219 |
MS.gene44930.t1 | AT4G38740 | 61.714 | 175 | 63 | 3 | 1 | 174 | 1 | 172 | 2.28e-70 | 218 |
MS.gene44930.t1 | AT2G21130 | 61.494 | 174 | 63 | 3 | 3 | 175 | 4 | 174 | 3.97e-70 | 217 |
MS.gene44930.t1 | AT3G56070 | 63.218 | 174 | 60 | 3 | 1 | 173 | 1 | 171 | 9.35e-70 | 216 |
MS.gene44930.t1 | AT3G56070 | 63.218 | 174 | 60 | 3 | 1 | 173 | 1 | 171 | 9.35e-70 | 216 |
MS.gene44930.t1 | AT2G29960 | 59.763 | 169 | 66 | 2 | 5 | 173 | 33 | 199 | 5.30e-64 | 202 |
MS.gene44930.t1 | AT2G29960 | 59.763 | 169 | 66 | 2 | 5 | 173 | 33 | 199 | 5.30e-64 | 202 |
MS.gene44930.t1 | AT5G13120 | 57.386 | 176 | 64 | 2 | 5 | 177 | 87 | 254 | 5.35e-64 | 204 |
MS.gene44930.t1 | AT5G13120 | 57.386 | 176 | 64 | 2 | 5 | 177 | 91 | 258 | 6.39e-64 | 204 |
MS.gene44930.t1 | AT3G55920 | 60.000 | 170 | 66 | 2 | 5 | 174 | 60 | 227 | 8.64e-64 | 203 |
MS.gene44930.t1 | AT3G62030 | 58.580 | 169 | 62 | 1 | 5 | 173 | 95 | 255 | 1.09e-62 | 201 |
MS.gene44930.t1 | AT3G62030 | 58.580 | 169 | 62 | 1 | 5 | 173 | 96 | 256 | 1.14e-62 | 201 |
MS.gene44930.t1 | AT3G62030 | 58.580 | 169 | 62 | 1 | 5 | 173 | 149 | 309 | 2.75e-62 | 202 |
MS.gene44930.t1 | AT5G58710 | 58.580 | 169 | 68 | 2 | 5 | 173 | 36 | 202 | 1.02e-60 | 194 |
MS.gene44930.t1 | AT2G38730 | 56.395 | 172 | 71 | 2 | 3 | 173 | 31 | 199 | 4.67e-59 | 189 |
MS.gene44930.t1 | AT2G29960 | 57.396 | 169 | 60 | 3 | 5 | 173 | 33 | 189 | 1.83e-58 | 188 |
MS.gene44930.t1 | AT4G34960 | 53.846 | 169 | 77 | 1 | 5 | 173 | 48 | 215 | 1.86e-57 | 186 |
MS.gene44930.t1 | AT2G16600 | 55.491 | 173 | 51 | 3 | 3 | 174 | 4 | 151 | 4.84e-57 | 183 |
MS.gene44930.t1 | AT4G34960 | 57.377 | 122 | 51 | 1 | 5 | 126 | 48 | 168 | 6.88e-44 | 149 |
MS.gene44930.t1 | AT4G32420 | 47.953 | 171 | 86 | 2 | 3 | 172 | 6 | 174 | 4.35e-43 | 159 |
MS.gene44930.t1 | AT4G32420 | 47.953 | 171 | 86 | 2 | 3 | 172 | 6 | 174 | 4.35e-43 | 159 |
MS.gene44930.t1 | AT4G32420 | 47.953 | 171 | 86 | 2 | 3 | 172 | 6 | 174 | 4.35e-43 | 159 |
MS.gene44930.t1 | AT4G32420 | 47.953 | 171 | 86 | 2 | 3 | 172 | 6 | 174 | 4.35e-43 | 159 |
MS.gene44930.t1 | AT3G22920 | 46.703 | 182 | 85 | 6 | 1 | 179 | 1 | 173 | 2.99e-41 | 145 |
MS.gene44930.t1 | AT4G32420 | 48.993 | 149 | 76 | 0 | 3 | 151 | 6 | 154 | 7.95e-41 | 153 |
MS.gene44930.t1 | AT3G44600 | 51.299 | 154 | 62 | 3 | 18 | 170 | 485 | 626 | 3.08e-39 | 147 |
MS.gene44930.t1 | AT1G01940 | 48.993 | 149 | 63 | 3 | 18 | 165 | 10 | 146 | 1.19e-38 | 135 |
MS.gene44930.t1 | AT2G36130 | 44.242 | 165 | 74 | 5 | 4 | 167 | 10 | 157 | 1.50e-35 | 127 |
MS.gene44930.t1 | AT5G67530 | 44.156 | 154 | 73 | 4 | 18 | 170 | 353 | 494 | 1.27e-32 | 128 |
MS.gene44930.t1 | AT4G33060 | 43.919 | 148 | 66 | 6 | 18 | 161 | 22 | 156 | 3.30e-26 | 109 |
MS.gene44930.t1 | AT1G53720 | 34.591 | 159 | 83 | 5 | 18 | 167 | 10 | 156 | 3.61e-19 | 87.8 |
MS.gene44930.t1 | AT1G53720 | 34.591 | 159 | 83 | 5 | 18 | 167 | 10 | 156 | 1.18e-18 | 87.4 |
MS.gene44930.t1 | AT3G25230 | 36.207 | 174 | 100 | 5 | 194 | 359 | 375 | 545 | 4.20e-18 | 85.9 |
MS.gene44930.t1 | AT3G25230 | 36.207 | 174 | 100 | 5 | 194 | 359 | 375 | 545 | 4.69e-18 | 85.9 |
MS.gene44930.t1 | AT5G48570 | 32.121 | 165 | 102 | 3 | 203 | 360 | 395 | 556 | 1.83e-15 | 78.2 |
MS.gene44930.t1 | AT1G58450 | 35.172 | 145 | 83 | 4 | 219 | 359 | 17 | 154 | 5.90e-13 | 66.6 |
MS.gene44930.t1 | AT2G47320 | 29.801 | 151 | 91 | 4 | 17 | 167 | 86 | 221 | 5.82e-11 | 62.4 |
Find 106 sgRNAs with CRISPR-Local
Find 292 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCGCAAGGCTTTGCGTTATT+TGG | 0.146656 | 8.1:-28080363 | MS.gene44930:CDS |
CAGAGAAGAGCACTGCTTTA+AGG | 0.171724 | 8.1:-28080188 | MS.gene44930:CDS |
CAGGCCTGTAAATTAAAATT+AGG | 0.205661 | 8.1:-28079419 | MS.gene44930:CDS |
TCTCTCTGCACCGGCGAAAA+AGG | 0.252295 | 8.1:-28081300 | MS.gene44930:CDS |
GATGGGAAGCATGTGGTGTT+TGG | 0.308347 | 8.1:-28081021 | MS.gene44930:CDS |
GACGACGAGGACTCCGCATT+TGG | 0.329574 | 8.1:-28081043 | MS.gene44930:CDS |
TGTATTACTGACCTTCTTCC+TGG | 0.341120 | 8.1:+28077933 | None:intergenic |
AACTGACTCCCATTGGTGTT+TGG | 0.342691 | 8.1:+28081075 | None:intergenic |
CTGTTGAGCTTGGTCCGGTT+GGG | 0.343040 | 8.1:-28080966 | MS.gene44930:CDS |
ATGGGAAGCATGTGGTGTTT+GGG | 0.357969 | 8.1:-28081020 | MS.gene44930:CDS |
CTTTGGAAATGAACACTATA+AGG | 0.386961 | 8.1:-28080761 | MS.gene44930:intron |
CAGTGGAGCTTTACTTGATT+CGG | 0.393358 | 8.1:-28079390 | MS.gene44930:CDS |
AATAGTCACCAACCATCATT+TGG | 0.395698 | 8.1:+28078583 | None:intergenic |
TTGCTGAAGGGGAGGATGAA+GGG | 0.404415 | 8.1:-28080894 | MS.gene44930:CDS |
TGAAAGGGATTGGAGTTGTT+AGG | 0.404472 | 8.1:-28080990 | MS.gene44930:CDS |
GGGAAGGTTGTGAAAGGGAT+TGG | 0.404533 | 8.1:-28081000 | MS.gene44930:CDS |
GTTGAATCTATCAAGGGCTT+TGG | 0.411683 | 8.1:-28080778 | MS.gene44930:CDS |
ACCTAAAACACGAACGGAAA+GGG | 0.412914 | 8.1:-28081122 | MS.gene44930:CDS |
CAATGACCTGGATGCCGCTC+TGG | 0.426988 | 8.1:-28078635 | MS.gene44930:CDS |
GCGTTATTTGGACATGTGTT+GGG | 0.434614 | 8.1:-28080351 | MS.gene44930:CDS |
TGCGTTATTTGGACATGTGT+TGG | 0.447762 | 8.1:-28080352 | MS.gene44930:CDS |
ATCTCCGCCTCCGACGGAAC+CGG | 0.449439 | 8.1:-28081189 | MS.gene44930:CDS |
ATCCACCATTCAAGCTCCTC+CGG | 0.449666 | 8.1:+28080808 | None:intergenic |
ATTGCTGAAGGGGAGGATGA+AGG | 0.452826 | 8.1:-28080895 | MS.gene44930:CDS |
TCTGTTGAGCTTGGTCCGGT+TGG | 0.454918 | 8.1:-28080967 | MS.gene44930:CDS |
ATGTTGTGATTGCTGATTGT+GGG | 0.460587 | 8.1:-28080921 | MS.gene44930:CDS |
GGCTTGGTATCAAGATCAAC+AGG | 0.465685 | 8.1:+28080829 | None:intergenic |
GGAAGATGGAGTTCTTGAAA+TGG | 0.467050 | 8.1:+28081250 | None:intergenic |
AGCTCTGTTTCGCAAAGGCC+AGG | 0.474119 | 8.1:-28079336 | MS.gene44930:intron |
TTTGGACATGTGTTGGGAGA+AGG | 0.474985 | 8.1:-28080345 | MS.gene44930:CDS |
TGTTGAGCTTGGTCCGGTTG+GGG | 0.477465 | 8.1:-28080965 | MS.gene44930:CDS |
GTTGTTAGGTCTGTTGAGCT+TGG | 0.477926 | 8.1:-28080976 | MS.gene44930:CDS |
GAATGCTGTTGAATCTATCA+AGG | 0.478392 | 8.1:-28080785 | MS.gene44930:CDS |
TCGAAGTACACTCTTGGGTT+CGG | 0.485037 | 8.1:+28081408 | None:intergenic |
CTTATGTCGAAGTACACTCT+TGG | 0.486685 | 8.1:+28081402 | None:intergenic |
CCAAGCCGGAGGAGCTTGAA+TGG | 0.487486 | 8.1:-28080813 | MS.gene44930:CDS |
ATCTTCCACCGTGTCGTCAA+AGG | 0.488625 | 8.1:-28081234 | MS.gene44930:CDS |
ACGAGGACTCCGCATTTGGA+TGG | 0.494223 | 8.1:-28081039 | MS.gene44930:CDS |
GGTTGCTGATAGACATGATA+AGG | 0.494242 | 8.1:-28077827 | MS.gene44930:CDS |
AGCTATCCAGAGCGGCATCC+AGG | 0.495882 | 8.1:+28078629 | None:intergenic |
TGCTGAAGGGGAGGATGAAG+GGG | 0.498218 | 8.1:-28080893 | MS.gene44930:CDS |
GGTCGATCATTCTCCCCAAC+CGG | 0.499007 | 8.1:+28080952 | None:intergenic |
TGACTCGCCGCCGGTTCCGT+CGG | 0.502311 | 8.1:+28081179 | None:intergenic |
GGAGAATGATCGACCGGAGC+AGG | 0.502619 | 8.1:-28080944 | MS.gene44930:CDS |
TTATGTCGAAGTACACTCTT+GGG | 0.506372 | 8.1:+28081403 | None:intergenic |
CCATTCAAGCTCCTCCGGCT+TGG | 0.508001 | 8.1:+28080813 | None:intergenic |
TTTCGCCGGTGCAGAGAGAT+CGG | 0.511855 | 8.1:+28081304 | None:intergenic |
GCCGCCGGTTCCGTCGGAGG+CGG | 0.516656 | 8.1:+28081185 | None:intergenic |
TTTGACGACACGGTGGAAGA+TGG | 0.517502 | 8.1:+28081236 | None:intergenic |
AGGCGGAGATGTCACCGCCT+TGG | 0.518147 | 8.1:+28081202 | None:intergenic |
ATACCGGTCCAAACACCAAT+GGG | 0.522499 | 8.1:-28081083 | MS.gene44930:CDS |
TTAGAGTTGGAGCCAAATGA+TGG | 0.524064 | 8.1:-28078595 | MS.gene44930:intron |
CTTCAAGAGAGCATTAGAGT+TGG | 0.526509 | 8.1:-28078608 | MS.gene44930:CDS |
AAGCATCGGCGGTGAACTCG+AGG | 0.527582 | 8.1:-28081382 | MS.gene44930:CDS |
GTGTTTGGGAAGGTTGTGAA+AGG | 0.528665 | 8.1:-28081006 | MS.gene44930:CDS |
TAGGTCTGTTGAGCTTGGTC+CGG | 0.531881 | 8.1:-28080971 | MS.gene44930:CDS |
ACTCCCATTGGTGTTTGGAC+CGG | 0.534347 | 8.1:+28081080 | None:intergenic |
TTGTGGGGAGATTGCTGAAG+GGG | 0.543269 | 8.1:-28080905 | MS.gene44930:CDS |
GATGTTGTGATTGCTGATTG+TGG | 0.548690 | 8.1:-28080922 | MS.gene44930:CDS |
CTCGCCGCCGGTTCCGTCGG+AGG | 0.551251 | 8.1:+28081182 | None:intergenic |
GCAATCACAACATCCTGCTC+CGG | 0.552793 | 8.1:+28080931 | None:intergenic |
ACAGAAGCAAGATTATAAGA+TGG | 0.553869 | 8.1:-28080399 | MS.gene44930:intron |
ACCGTAGATTGACTCGCCGC+CGG | 0.554056 | 8.1:+28081170 | None:intergenic |
TGGGGAGATTGCTGAAGGGG+AGG | 0.554625 | 8.1:-28080902 | MS.gene44930:CDS |
TGTTTGGGAAGGTTGTGAAA+GGG | 0.554643 | 8.1:-28081005 | MS.gene44930:CDS |
GACCTAAAACACGAACGGAA+AGG | 0.557928 | 8.1:-28081123 | MS.gene44930:CDS |
GTACGCAATTGCCAGGAAGA+AGG | 0.562491 | 8.1:-28077944 | MS.gene44930:intron |
GTTTGGACCGGTATTCGCCA+TGG | 0.566119 | 8.1:+28081092 | None:intergenic |
ACCGGCGGCGAGTCAATCTA+CGG | 0.568908 | 8.1:-28081171 | MS.gene44930:CDS |
GAAGCATGTGGTGTTTGGGA+AGG | 0.570028 | 8.1:-28081016 | MS.gene44930:CDS |
GTCAAAGGCTTCATGATCCA+AGG | 0.574138 | 8.1:-28081219 | MS.gene44930:CDS |
TGTGATACTTACTGAACTGT+TGG | 0.576217 | 8.1:+28080143 | None:intergenic |
TCCGCCTCCGACGGAACCGG+CGG | 0.580073 | 8.1:-28081186 | MS.gene44930:CDS |
CGAGGACTCCGCATTTGGAT+GGG | 0.581508 | 8.1:-28081038 | MS.gene44930:CDS |
GGTGACATCTCCGCCTCCGA+CGG | 0.583678 | 8.1:-28081195 | MS.gene44930:CDS |
GATTGTGGGGAGATTGCTGA+AGG | 0.584654 | 8.1:-28080907 | MS.gene44930:CDS |
CTTGAAATGGAGAGGGACGT+TGG | 0.592824 | 8.1:+28081263 | None:intergenic |
ATGGAGTTCTTGAAATGGAG+AGG | 0.601662 | 8.1:+28081255 | None:intergenic |
GGTTGGGGAGAATGATCGAC+CGG | 0.607475 | 8.1:-28080950 | MS.gene44930:CDS |
TGGAGTTCTTGAAATGGAGA+GGG | 0.613006 | 8.1:+28081256 | None:intergenic |
GACATGTGTTGGGAGAAGGA+TGG | 0.614412 | 8.1:-28080341 | MS.gene44930:CDS |
AGCATCGGCGGTGAACTCGA+GGG | 0.617751 | 8.1:-28081381 | MS.gene44930:CDS |
TCATGAAGCCTTTGACGACA+CGG | 0.625678 | 8.1:+28081226 | None:intergenic |
TGTTGATCTTGATACCAAGC+CGG | 0.625762 | 8.1:-28080827 | MS.gene44930:CDS |
AATACCGGTCCAAACACCAA+TGG | 0.627525 | 8.1:-28081084 | MS.gene44930:CDS |
TGTTGTGATTGCTGATTGTG+GGG | 0.627931 | 8.1:-28080920 | MS.gene44930:CDS |
AGCCGGAGGAGCTTGAATGG+TGG | 0.631915 | 8.1:-28080810 | MS.gene44930:CDS |
AATTTCCGATCTCTCTGCAC+CGG | 0.632806 | 8.1:-28081309 | MS.gene44930:CDS |
ATTTCGACCTAAAACACGAA+CGG | 0.634503 | 8.1:-28081128 | MS.gene44930:CDS |
TCGGACTTTGCAATGCACGA+TGG | 0.636187 | 8.1:-28079371 | MS.gene44930:CDS |
AATGCTGTTGAATCTATCAA+GGG | 0.636468 | 8.1:-28080784 | MS.gene44930:CDS |
ATTGTGGGGAGATTGCTGAA+GGG | 0.637501 | 8.1:-28080906 | MS.gene44930:CDS |
TGGAGAGGGACGTTGGTGTG+TGG | 0.640483 | 8.1:+28081270 | None:intergenic |
GTATATGTTACTCAATGACC+TGG | 0.641203 | 8.1:-28078647 | MS.gene44930:CDS |
GCAAAAGCTCTGTTTCGCAA+AGG | 0.644842 | 8.1:-28079341 | MS.gene44930:CDS |
GTGTACTTCGACATAAGCAT+CGG | 0.649168 | 8.1:-28081396 | MS.gene44930:CDS |
GAGAAGGATGGTGTTGACCA+AGG | 0.659869 | 8.1:-28080329 | MS.gene44930:intron |
TACTTCGACATAAGCATCGG+CGG | 0.673491 | 8.1:-28081393 | MS.gene44930:CDS |
ACATGCTTCCCATCCAAATG+CGG | 0.674230 | 8.1:+28081030 | None:intergenic |
TGATCTTGATACCAAGCCGG+AGG | 0.689161 | 8.1:-28080824 | MS.gene44930:CDS |
GCATTTGGATGGGAAGCATG+TGG | 0.693552 | 8.1:-28081028 | MS.gene44930:CDS |
TTAAAATTAGGTGACCTCAG+TGG | 0.703190 | 8.1:-28079407 | MS.gene44930:CDS |
TGAAGCCTTTGACGACACGG+TGG | 0.743535 | 8.1:+28081229 | None:intergenic |
TCTCTTGAAGCTATCCAGAG+CGG | 0.756413 | 8.1:+28078621 | None:intergenic |
AAAGGCTTCATGATCCAAGG+CGG | 0.764461 | 8.1:-28081216 | MS.gene44930:CDS |
AATCAAGTAAAGCTCCACTG+AGG | 0.768633 | 8.1:+28079393 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATTACTATATATAATACA+TGG | + | chr8.1:28080506-28080525 | None:intergenic | 10.0% |
!!! | TTAATGTTTTAGTTTTATTT+GGG | - | chr8.1:28078706-28078725 | MS.gene44930:intron | 10.0% |
!!! | CTTAATGTTTTAGTTTTATT+TGG | - | chr8.1:28078705-28078724 | MS.gene44930:intron | 15.0% |
!!! | GTTATTAACTTTTTTAAAGA+TGG | - | chr8.1:28078335-28078354 | MS.gene44930:intron | 15.0% |
!!! | TAAATGTGAATTAAATTTTC+AGG | - | chr8.1:28079768-28079787 | MS.gene44930:intron | 15.0% |
!! | AAATTGACAAAAAGTTTAAG+GGG | - | chr8.1:28080177-28080196 | MS.gene44930:CDS | 20.0% |
!! | AAGTATTTGTAAAGAAAACA+TGG | + | chr8.1:28079534-28079553 | None:intergenic | 20.0% |
!! | AATTACTTTCTTATAACACT+GGG | - | chr8.1:28080721-28080740 | MS.gene44930:intron | 20.0% |
!! | ACAAATTGACAAAAAGTTTA+AGG | - | chr8.1:28080175-28080194 | MS.gene44930:CDS | 20.0% |
!! | AGTATTTGTAAAGAAAACAT+GGG | + | chr8.1:28079533-28079552 | None:intergenic | 20.0% |
!! | ATTAAAGACAAAACAATGAA+AGG | + | chr8.1:28080934-28080953 | None:intergenic | 20.0% |
!! | CAAATTGACAAAAAGTTTAA+GGG | - | chr8.1:28080176-28080195 | MS.gene44930:CDS | 20.0% |
!! | TAAAGTAGCAAATTACAATT+CGG | + | chr8.1:28080270-28080289 | None:intergenic | 20.0% |
!! | TTAAAGACAAAACAATGAAA+GGG | + | chr8.1:28080933-28080952 | None:intergenic | 20.0% |
!! | TTCATATAGAAACATATCTT+TGG | - | chr8.1:28080815-28080834 | MS.gene44930:CDS | 20.0% |
!!! | CAAAGTTAATTTGATATTTC+TGG | - | chr8.1:28081189-28081208 | MS.gene44930:CDS | 20.0% |
!!! | GTAATTTGCTATTTGTTTTT+TGG | - | chr8.1:28080519-28080538 | MS.gene44930:intron | 20.0% |
!!! | TCATGTTTTGTAAATTTAGT+TGG | - | chr8.1:28079431-28079450 | MS.gene44930:intron | 20.0% |
! | AAATAGTGTAGTGTTTATTC+TGG | - | chr8.1:28080890-28080909 | MS.gene44930:CDS | 25.0% |
! | AATAATCGAAAACAACAATG+AGG | + | chr8.1:28078550-28078569 | None:intergenic | 25.0% |
! | ACTAAAACATTAAGCTTACA+TGG | + | chr8.1:28078699-28078718 | None:intergenic | 25.0% |
! | AGCAATCAATTATTGAAAGT+CGG | + | chr8.1:28079284-28079303 | None:intergenic | 25.0% |
! | AGTCAAAACCATCAAATTTA+TGG | - | chr8.1:28080323-28080342 | MS.gene44930:intron | 25.0% |
! | ATAAGGTGAATTTCAAAGAA+TGG | - | chr8.1:28078462-28078481 | MS.gene44930:intron | 25.0% |
! | ATAGATGACATTGTTAAACA+CGG | + | chr8.1:28079944-28079963 | None:intergenic | 25.0% |
! | ATTACTTTCTTATAACACTG+GGG | - | chr8.1:28080722-28080741 | MS.gene44930:intron | 25.0% |
! | CAAAGAATGGTTATAGAATA+GGG | - | chr8.1:28078475-28078494 | MS.gene44930:intron | 25.0% |
! | CAAATAAAAGATACACACTA+GGG | + | chr8.1:28078577-28078596 | None:intergenic | 25.0% |
! | CAATTACTTTCTTATAACAC+TGG | - | chr8.1:28080720-28080739 | MS.gene44930:intron | 25.0% |
! | CTATATATAATACATGGCTA+TGG | + | chr8.1:28080500-28080519 | None:intergenic | 25.0% |
! | GTCAAAACCATCAAATTTAT+GGG | - | chr8.1:28080324-28080343 | MS.gene44930:intron | 25.0% |
! | TACAAATACTTACTCTCTTA+GGG | - | chr8.1:28079543-28079562 | MS.gene44930:intron | 25.0% |
! | TAGTAAAATAGTCATTCACA+AGG | + | chr8.1:28079504-28079523 | None:intergenic | 25.0% |
! | TCAAAGAATGGTTATAGAAT+AGG | - | chr8.1:28078474-28078493 | MS.gene44930:intron | 25.0% |
! | TTAACAAGTCAAAGTGTAAA+TGG | - | chr8.1:28081050-28081069 | MS.gene44930:CDS | 25.0% |
! | TTACAAATACTTACTCTCTT+AGG | - | chr8.1:28079542-28079561 | MS.gene44930:intron | 25.0% |
! | TTGATGCATATCTTTGTTAA+AGG | - | chr8.1:28078518-28078537 | MS.gene44930:intron | 25.0% |
!! | AAAATCATGAGAAGAGTTTT+AGG | + | chr8.1:28079232-28079251 | None:intergenic | 25.0% |
!! | AAATTTTCGTCTTCGAAATT+TGG | + | chr8.1:28078062-28078081 | None:intergenic | 25.0% |
!! | TTTATTCTGTTTACTGCTTT+TGG | - | chr8.1:28081351-28081370 | MS.gene44930:CDS | 25.0% |
!!! | AAGACTTTAGTTTTGGAAAT+TGG | - | chr8.1:28079348-28079367 | MS.gene44930:CDS | 25.0% |
!!! | AATTTGATGGTTTTGACTTT+TGG | + | chr8.1:28080321-28080340 | None:intergenic | 25.0% |
!!! | AGACTTTAGTTTTGGAAATT+GGG | - | chr8.1:28079349-28079368 | MS.gene44930:CDS | 25.0% |
!!! | AGTTTTATTTGGGAATATAG+TGG | - | chr8.1:28078716-28078735 | MS.gene44930:intron | 25.0% |
!!! | GTCACCTAATTTTAATTTAC+AGG | + | chr8.1:28079794-28079813 | None:intergenic | 25.0% |
AATGCTGTTGAATCTATCAA+GGG | - | chr8.1:28078422-28078441 | MS.gene44930:intron | 30.0% | |
AATTGTTTAATAGGGAGGAA+AGG | - | chr8.1:28080115-28080134 | MS.gene44930:intron | 30.0% | |
AATTTGTACCAAGATGGATA+GGG | + | chr8.1:28080162-28080181 | None:intergenic | 30.0% | |
ACAGAAGCAAGATTATAAGA+TGG | - | chr8.1:28078807-28078826 | MS.gene44930:intron | 30.0% | |
AGAATGTGACACATTATAAC+AGG | + | chr8.1:28079711-28079730 | None:intergenic | 30.0% | |
AGAGATTTCATGTTGAATTG+TGG | + | chr8.1:28081020-28081039 | None:intergenic | 30.0% | |
AGAGTTTCAATAGAGAAAGT+AGG | - | chr8.1:28079908-28079927 | MS.gene44930:intron | 30.0% | |
ATAACTATAACCAGTCATAG+GGG | - | chr8.1:28080444-28080463 | MS.gene44930:intron | 30.0% | |
ATTGAGATCCAAAACATCTT+TGG | - | chr8.1:28081129-28081148 | MS.gene44930:CDS | 30.0% | |
ATTGTTTAATAGGGAGGAAA+GGG | - | chr8.1:28080116-28080135 | MS.gene44930:intron | 30.0% | |
CAGGCCTGTAAATTAAAATT+AGG | - | chr8.1:28079787-28079806 | MS.gene44930:intron | 30.0% | |
CCAAATAAAAGATACACACT+AGG | + | chr8.1:28078578-28078597 | None:intergenic | 30.0% | |
CTGGTGTGAATTGTTTAATA+GGG | - | chr8.1:28080107-28080126 | MS.gene44930:intron | 30.0% | |
GAAATGGTAAAGGAAGAAAA+AGG | + | chr8.1:28081299-28081318 | None:intergenic | 30.0% | |
GATAACTATAACCAGTCATA+GGG | - | chr8.1:28080443-28080462 | MS.gene44930:intron | 30.0% | |
GTCAAAGTGTAAATGGAATT+AGG | - | chr8.1:28081057-28081076 | MS.gene44930:CDS | 30.0% | |
TAAAATAGTCATTCACAAGG+TGG | + | chr8.1:28079501-28079520 | None:intergenic | 30.0% | |
TAATCAGCAGATCATAAGAA+TGG | + | chr8.1:28078752-28078771 | None:intergenic | 30.0% | |
TGATAACTATAACCAGTCAT+AGG | - | chr8.1:28080442-28080461 | MS.gene44930:intron | 30.0% | |
TGTAGTTAAAGGCTTAAGAA+TGG | - | chr8.1:28079199-28079218 | MS.gene44930:intron | 30.0% | |
TTAAGTGAACTGATTGAAGA+AGG | + | chr8.1:28079746-28079765 | None:intergenic | 30.0% | |
TTACAATTCGGTACTTAAGA+AGG | + | chr8.1:28080258-28080277 | None:intergenic | 30.0% | |
TTCCAAAACTAAAGTCTTGA+AGG | + | chr8.1:28079346-28079365 | None:intergenic | 30.0% | |
TTCTTTAGTATCTCATCTCA+TGG | - | chr8.1:28078977-28078996 | MS.gene44930:intron | 30.0% | |
TTTATTTCATTCATTGCCTG+TGG | - | chr8.1:28080661-28080680 | MS.gene44930:intron | 30.0% | |
TTTGTCAATTTGTACCAAGA+TGG | + | chr8.1:28080168-28080187 | None:intergenic | 30.0% | |
! | AATAAAAAACTGACTCCCAT+TGG | + | chr8.1:28078141-28078160 | None:intergenic | 30.0% |
! | AGCTTTAGTTGTGTAGTTAA+AGG | - | chr8.1:28079188-28079207 | MS.gene44930:intron | 30.0% |
! | CATAGAACTTTTATGCTACT+AGG | - | chr8.1:28080042-28080061 | MS.gene44930:intron | 30.0% |
! | CCTAGTGTGTATCTTTTATT+TGG | - | chr8.1:28078575-28078594 | MS.gene44930:intron | 30.0% |
! | CTTTGGAAATGAACACTATA+AGG | - | chr8.1:28078445-28078464 | MS.gene44930:intron | 30.0% |
! | GTCATAATCCAAAGATGTTT+TGG | + | chr8.1:28081140-28081159 | None:intergenic | 30.0% |
! | GTCATCATTTTATGTGACTA+GGG | - | chr8.1:28079088-28079107 | MS.gene44930:intron | 30.0% |
! | TGTCATCATTTTATGTGACT+AGG | - | chr8.1:28079087-28079106 | MS.gene44930:intron | 30.0% |
!! | TTTTTGGTCTGCTTAATTTC+AGG | - | chr8.1:28080535-28080554 | MS.gene44930:intron | 30.0% |
AACCAATCATGTGTGCAATT+TGG | + | chr8.1:28079412-28079431 | None:intergenic | 35.0% | |
AACTACACAACTAAAGCTTG+TGG | + | chr8.1:28079186-28079205 | None:intergenic | 35.0% | |
AATAGTCACCAACCATCATT+TGG | + | chr8.1:28080626-28080645 | None:intergenic | 35.0% | |
ACAAAACAATGAAAGGGAGA+GGG | + | chr8.1:28080927-28080946 | None:intergenic | 35.0% | |
ACCAATCATGTGTGCAATTT+GGG | + | chr8.1:28079411-28079430 | None:intergenic | 35.0% | |
ATCAATTATTGAAAGTCGGC+TGG | + | chr8.1:28079280-28079299 | None:intergenic | 35.0% | |
ATTGTGGAAATGATGTGACT+TGG | + | chr8.1:28081004-28081023 | None:intergenic | 35.0% | |
ATTTCGACCTAAAACACGAA+CGG | - | chr8.1:28078078-28078097 | MS.gene44930:intron | 35.0% | |
CAATTTGTACCAAGATGGAT+AGG | + | chr8.1:28080163-28080182 | None:intergenic | 35.0% | |
CAGAGTTCCCATAAATTTGA+TGG | + | chr8.1:28080334-28080353 | None:intergenic | 35.0% | |
CATACAGTCATATTGTATGC+TGG | - | chr8.1:28080088-28080107 | MS.gene44930:intron | 35.0% | |
CGTGTATGTTTCATACACAA+AGG | + | chr8.1:28081104-28081123 | None:intergenic | 35.0% | |
GAACAAGACAGCATTTGAAA+TGG | + | chr8.1:28081315-28081334 | None:intergenic | 35.0% | |
GAAGGAGTCTATTCATGATA+AGG | - | chr8.1:28080850-28080869 | MS.gene44930:CDS | 35.0% | |
GAATGCTGTTGAATCTATCA+AGG | - | chr8.1:28078421-28078440 | MS.gene44930:intron | 35.0% | |
GACAAAAAGTTTAAGGGGAA+GGG | - | chr8.1:28080182-28080201 | MS.gene44930:CDS | 35.0% | |
GCATACAATATGACTGTATG+AGG | + | chr8.1:28080088-28080107 | None:intergenic | 35.0% | |
GCTGGTGTGAATTGTTTAAT+AGG | - | chr8.1:28080106-28080125 | MS.gene44930:intron | 35.0% | |
GGTTATAGTTATCAATTCCC+TGG | + | chr8.1:28080436-28080455 | None:intergenic | 35.0% | |
GTATATGTTACTCAATGACC+TGG | - | chr8.1:28080559-28080578 | MS.gene44930:intron | 35.0% | |
GTGTGAATTGTTTAATAGGG+AGG | - | chr8.1:28080110-28080129 | MS.gene44930:intron | 35.0% | |
TGACAAAAAGTTTAAGGGGA+AGG | - | chr8.1:28080181-28080200 | MS.gene44930:CDS | 35.0% | |
TGTGATACTTACTGAACTGT+TGG | + | chr8.1:28079066-28079085 | None:intergenic | 35.0% | |
TTAAAATTAGGTGACCTCAG+TGG | - | chr8.1:28079799-28079818 | MS.gene44930:intron | 35.0% | |
TTATGTCGAAGTACACTCTT+GGG | + | chr8.1:28077806-28077825 | None:intergenic | 35.0% | |
TTCTGTAAGAAAAAGGGGAA+GGG | + | chr8.1:28080405-28080424 | None:intergenic | 35.0% | |
TTGAGTGTAATGAACTTCCT+GGG | - | chr8.1:28080763-28080782 | MS.gene44930:CDS | 35.0% | |
! | AAACATATCTTTGGCTTACC+AGG | - | chr8.1:28080824-28080843 | MS.gene44930:CDS | 35.0% |
! | AACATATCTTTGGCTTACCA+GGG | - | chr8.1:28080825-28080844 | MS.gene44930:CDS | 35.0% |
! | ACTATTTCTTGTCTCGACAT+TGG | + | chr8.1:28080877-28080896 | None:intergenic | 35.0% |
! | ATGGTGATACTTTTGCTGAT+TGG | - | chr8.1:28078354-28078373 | MS.gene44930:intron | 35.0% |
! | ATGTTGTGATTGCTGATTGT+GGG | - | chr8.1:28078285-28078304 | MS.gene44930:intron | 35.0% |
! | ATTTTATCCATGGCGAATAC+CGG | - | chr8.1:28078107-28078126 | MS.gene44930:intron | 35.0% |
! | CTATTTCTTGTCTCGACATT+GGG | + | chr8.1:28080876-28080895 | None:intergenic | 35.0% |
! | GACAGCATTTGAAATGGTAA+AGG | + | chr8.1:28081309-28081328 | None:intergenic | 35.0% |
!! | TGAAAAGCATTTATGACCAC+AGG | + | chr8.1:28080680-28080699 | None:intergenic | 35.0% |
!! | TGCCTTCAAGACTTTAGTTT+TGG | - | chr8.1:28079341-28079360 | MS.gene44930:CDS | 35.0% |
!! | TGTTTACTGCTTTTGGTTAC+AGG | - | chr8.1:28081358-28081377 | MS.gene44930:CDS | 35.0% |
!!! | AGTTTTTTATTACGACGACG+AGG | - | chr8.1:28078150-28078169 | MS.gene44930:intron | 35.0% |
!!! | TTGATGGTTTTGACTTTTGG+AGG | + | chr8.1:28080318-28080337 | None:intergenic | 35.0% |
AAGCAGACCTACTCAGAAAT+GGG | + | chr8.1:28079636-28079655 | None:intergenic | 40.0% | |
AATCAAGTAAAGCTCCACTG+AGG | + | chr8.1:28079816-28079835 | None:intergenic | 40.0% | |
AATGCATCAGCATACCACAA+AGG | + | chr8.1:28078775-28078794 | None:intergenic | 40.0% | |
ACCCAAATTGCACACATGAT+TGG | - | chr8.1:28079407-28079426 | MS.gene44930:CDS | 40.0% | |
ACCTAAAACACGAACGGAAA+GGG | - | chr8.1:28078084-28078103 | MS.gene44930:intron | 40.0% | |
AGACTAACTAAAACCGACCT+TGG | + | chr8.1:28078897-28078916 | None:intergenic | 40.0% | |
AGGAAAGGGTAAGGAAAAGA+AGG | - | chr8.1:28080130-28080149 | MS.gene44930:intron | 40.0% | |
AGTTATCAATTCCCTGGTCT+GGG | + | chr8.1:28080430-28080449 | None:intergenic | 40.0% | |
ATAGTCATTCACAAGGTGGT+AGG | + | chr8.1:28079497-28079516 | None:intergenic | 40.0% | |
ATGGAGTTCTTGAAATGGAG+AGG | + | chr8.1:28077954-28077973 | None:intergenic | 40.0% | |
CAGTGGAGCTTTACTTGATT+CGG | - | chr8.1:28079816-28079835 | MS.gene44930:intron | 40.0% | |
CATGATATATCCCCTATGAC+TGG | + | chr8.1:28080457-28080476 | None:intergenic | 40.0% | |
CGTTTGTAAATCGTCCTGTT+CGG | - | chr8.1:28080965-28080984 | MS.gene44930:CDS | 40.0% | |
CTTATGTCGAAGTACACTCT+TGG | + | chr8.1:28077807-28077826 | None:intergenic | 40.0% | |
GACAAAACAATGAAAGGGAG+AGG | + | chr8.1:28080928-28080947 | None:intergenic | 40.0% | |
GACTTGTCTCGTCAACTATT+AGG | - | chr8.1:28079119-28079138 | MS.gene44930:intron | 40.0% | |
GCGTTATTTGGACATGTGTT+GGG | - | chr8.1:28078855-28078874 | MS.gene44930:intron | 40.0% | |
GGAAAGGGTAAGGAAAAGAA+GGG | - | chr8.1:28080131-28080150 | MS.gene44930:intron | 40.0% | |
GGAAGATGGAGTTCTTGAAA+TGG | + | chr8.1:28077959-28077978 | None:intergenic | 40.0% | |
GGGTTCTTGATAAAGCTGTA+AGG | - | chr8.1:28080783-28080802 | MS.gene44930:CDS | 40.0% | |
GGTTGCTGATAGACATGATA+AGG | - | chr8.1:28081379-28081398 | MS.gene44930:CDS | 40.0% | |
GTGTACTTCGACATAAGCAT+CGG | - | chr8.1:28077810-28077829 | MS.gene44930:CDS | 40.0% | |
GTTCTGTAAGAAAAAGGGGA+AGG | + | chr8.1:28080406-28080425 | None:intergenic | 40.0% | |
GTTGAATCTATCAAGGGCTT+TGG | - | chr8.1:28078428-28078447 | MS.gene44930:intron | 40.0% | |
GTTGAGTGTAATGAACTTCC+TGG | - | chr8.1:28080762-28080781 | MS.gene44930:CDS | 40.0% | |
GTTTGTAAATCGTCCTGTTC+GGG | - | chr8.1:28080966-28080985 | MS.gene44930:CDS | 40.0% | |
TAAGAAAAAGGGGAAGGGAA+TGG | + | chr8.1:28080400-28080419 | None:intergenic | 40.0% | |
TAGGTCTGCATGATTCAACA+TGG | - | chr8.1:28079664-28079683 | MS.gene44930:intron | 40.0% | |
TAGGTCTGCTTCATTCAACT+AGG | - | chr8.1:28079645-28079664 | MS.gene44930:intron | 40.0% | |
TAGTTATCAATTCCCTGGTC+TGG | + | chr8.1:28080431-28080450 | None:intergenic | 40.0% | |
TCTATTGAAAGATGCCAACC+TGG | + | chr8.1:28079891-28079910 | None:intergenic | 40.0% | |
TGAAAGGGATTGGAGTTGTT+AGG | - | chr8.1:28078216-28078235 | MS.gene44930:intron | 40.0% | |
TGCGTTATTTGGACATGTGT+TGG | - | chr8.1:28078854-28078873 | MS.gene44930:intron | 40.0% | |
TGGAGTTCTTGAAATGGAGA+GGG | + | chr8.1:28077953-28077972 | None:intergenic | 40.0% | |
TGGGGGTTCTGTAAGAAAAA+GGG | + | chr8.1:28080411-28080430 | None:intergenic | 40.0% | |
TGTATTACTGACCTTCTTCC+TGG | + | chr8.1:28081276-28081295 | None:intergenic | 40.0% | |
TGTTGATCTTGATACCAAGC+CGG | - | chr8.1:28078379-28078398 | MS.gene44930:intron | 40.0% | |
TGTTTGGGAAGGTTGTGAAA+GGG | - | chr8.1:28078201-28078220 | MS.gene44930:intron | 40.0% | |
TTAATAGGGAGGAAAGGGTA+AGG | - | chr8.1:28080121-28080140 | MS.gene44930:intron | 40.0% | |
TTAGAGTTGGAGCCAAATGA+TGG | - | chr8.1:28080611-28080630 | MS.gene44930:intron | 40.0% | |
TTTATCCCTCCTGAAGAACA+GGG | + | chr8.1:28081236-28081255 | None:intergenic | 40.0% | |
! | AAAAAGAGTACGCAATTGCC+AGG | - | chr8.1:28081255-28081274 | MS.gene44930:CDS | 40.0% |
! | ACGGAAAGGGATTTTATCCA+TGG | - | chr8.1:28078097-28078116 | MS.gene44930:intron | 40.0% |
! | GATGTTGTGATTGCTGATTG+TGG | - | chr8.1:28078284-28078303 | MS.gene44930:intron | 40.0% |
! | GCAGAGAGATCGGAAATTTT+CGG | + | chr8.1:28077895-28077914 | None:intergenic | 40.0% |
! | TACAGCTTTATCAAGAACCC+AGG | + | chr8.1:28080783-28080802 | None:intergenic | 40.0% |
! | TGATCTGCTGATTACCTTTG+TGG | - | chr8.1:28078758-28078777 | MS.gene44930:intron | 40.0% |
! | TGTTGTGATTGCTGATTGTG+GGG | - | chr8.1:28078286-28078305 | MS.gene44930:intron | 40.0% |
! | TTTTATCCCTCCTGAAGAAC+AGG | + | chr8.1:28081237-28081256 | None:intergenic | 40.0% |
!! | CTTCAAGAGAGCATTAGAGT+TGG | - | chr8.1:28080598-28080617 | MS.gene44930:intron | 40.0% |
!! | GGCTATCAAAAAGTATCGCA+AGG | - | chr8.1:28078828-28078847 | MS.gene44930:intron | 40.0% |
!! | GTTCTGTGCTGTTCTGTTTT+TGG | - | chr8.1:28078926-28078945 | MS.gene44930:intron | 40.0% |
!!! | GGGAATATAGTGGCTAGTTT+TGG | - | chr8.1:28078726-28078745 | MS.gene44930:intron | 40.0% |
!!! | TCTGTTTTTGGTTGTTTCCG+TGG | - | chr8.1:28078938-28078957 | MS.gene44930:intron | 40.0% |
AAAGGCTTCATGATCCAAGG+CGG | - | chr8.1:28077990-28078009 | MS.gene44930:intron | 45.0% | |
AATACCGGTCCAAACACCAA+TGG | - | chr8.1:28078122-28078141 | MS.gene44930:intron | 45.0% | |
AATTTCCGATCTCTCTGCAC+CGG | - | chr8.1:28077897-28077916 | MS.gene44930:intron | 45.0% | |
ACATGCTTCCCATCCAAATG+CGG | + | chr8.1:28078179-28078198 | None:intergenic | 45.0% | |
AGCAAAGCAGTAACTAGCCA+CGG | + | chr8.1:28078958-28078977 | None:intergenic | 45.0% | |
AGTTGGAGCCAAATGATGGT+TGG | - | chr8.1:28080615-28080634 | MS.gene44930:intron | 45.0% | |
ATACCGGTCCAAACACCAAT+GGG | - | chr8.1:28078123-28078142 | MS.gene44930:intron | 45.0% | |
ATTGTGGGGAGATTGCTGAA+GGG | - | chr8.1:28078300-28078319 | MS.gene44930:intron | 45.0% | |
CTCTTAGGGCCAAACTAACA+AGG | - | chr8.1:28079557-28079576 | MS.gene44930:intron | 45.0% | |
CTGGGGGTTCTGTAAGAAAA+AGG | + | chr8.1:28080412-28080431 | None:intergenic | 45.0% | |
GAAGCAGACCTACTCAGAAA+TGG | + | chr8.1:28079637-28079656 | None:intergenic | 45.0% | |
GACCTAAAACACGAACGGAA+AGG | - | chr8.1:28078083-28078102 | MS.gene44930:intron | 45.0% | |
GCAAAAGCTCTGTTTCGCAA+AGG | - | chr8.1:28079865-28079884 | MS.gene44930:intron | 45.0% | |
GGGGGTTCTGTAAGAAAAAG+GGG | + | chr8.1:28080410-28080429 | None:intergenic | 45.0% | |
GGGTAAAACCCTATCCATCT+TGG | - | chr8.1:28080151-28080170 | MS.gene44930:intron | 45.0% | |
GTCAAAGGCTTCATGATCCA+AGG | - | chr8.1:28077987-28078006 | MS.gene44930:intron | 45.0% | |
GTGTTTGGGAAGGTTGTGAA+AGG | - | chr8.1:28078200-28078219 | MS.gene44930:intron | 45.0% | |
GTTATCAATTCCCTGGTCTG+GGG | + | chr8.1:28080429-28080448 | None:intergenic | 45.0% | |
GTTGTTAGGTCTGTTGAGCT+TGG | - | chr8.1:28078230-28078249 | MS.gene44930:intron | 45.0% | |
TAGGGCCAAACTAACAAGGT+TGG | - | chr8.1:28079561-28079580 | MS.gene44930:intron | 45.0% | |
TCATGAAGCCTTTGACGACA+CGG | + | chr8.1:28077983-28078002 | None:intergenic | 45.0% | |
TCGAAGTACACTCTTGGGTT+CGG | + | chr8.1:28077801-28077820 | None:intergenic | 45.0% | |
TCGCAAGGCTTTGCGTTATT+TGG | - | chr8.1:28078843-28078862 | MS.gene44930:intron | 45.0% | |
TCTCTTGAAGCTATCCAGAG+CGG | + | chr8.1:28080588-28080607 | None:intergenic | 45.0% | |
TGAATAGACTCCTTCAACCC+TGG | + | chr8.1:28080845-28080864 | None:intergenic | 45.0% | |
TTATAACACTGGGGTCCTGA+GGG | - | chr8.1:28080731-28080750 | MS.gene44930:intron | 45.0% | |
TTATCAATTCCCTGGTCTGG+GGG | + | chr8.1:28080428-28080447 | None:intergenic | 45.0% | |
TTTGGACATGTGTTGGGAGA+AGG | - | chr8.1:28078861-28078880 | MS.gene44930:intron | 45.0% | |
! | AACTGACTCCCATTGGTGTT+TGG | + | chr8.1:28078134-28078153 | None:intergenic | 45.0% |
! | ATGGGAAGCATGTGGTGTTT+GGG | - | chr8.1:28078186-28078205 | MS.gene44930:intron | 45.0% |
! | CGGAAATTTTCGGCGGTTTT+GGG | + | chr8.1:28077885-28077904 | None:intergenic | 45.0% |
! | GAGAGATCGGAAATTTTCGG+CGG | + | chr8.1:28077892-28077911 | None:intergenic | 45.0% |
! | GAGGATTTGTTTACCCGAAC+AGG | + | chr8.1:28080982-28081001 | None:intergenic | 45.0% |
! | GCCAAACTAACAAGGTTGGT+GGG | - | chr8.1:28079565-28079584 | MS.gene44930:intron | 45.0% |
! | GGCTTGGTATCAAGATCAAC+AGG | + | chr8.1:28078380-28078399 | None:intergenic | 45.0% |
! | GTGGAAATGATGTGACTTGG+AGG | + | chr8.1:28081001-28081020 | None:intergenic | 45.0% |
! | TCCCTTTCCGTTCGTGTTTT+AGG | + | chr8.1:28078088-28078107 | None:intergenic | 45.0% |
! | TCGGAAATTTTCGGCGGTTT+TGG | + | chr8.1:28077886-28077905 | None:intergenic | 45.0% |
!! | CAAACTAACAAGGTTGGTGG+GGG | - | chr8.1:28079567-28079586 | MS.gene44930:intron | 45.0% |
!! | CAGAGAAGAGCACTGCTTTA+AGG | - | chr8.1:28079018-28079037 | MS.gene44930:intron | 45.0% |
!! | CCAAACTAACAAGGTTGGTG+GGG | - | chr8.1:28079566-28079585 | MS.gene44930:intron | 45.0% |
!! | TACTTCGACATAAGCATCGG+CGG | - | chr8.1:28077813-28077832 | MS.gene44930:CDS | 45.0% |
ATCCACCATTCAAGCTCCTC+CGG | + | chr8.1:28078401-28078420 | None:intergenic | 50.0% | |
ATCTTCCACCGTGTCGTCAA+AGG | - | chr8.1:28077972-28077991 | MS.gene44930:intron | 50.0% | |
ATTGCTGAAGGGGAGGATGA+AGG | - | chr8.1:28078311-28078330 | MS.gene44930:intron | 50.0% | |
CATACCTTGCCCTGTTCTTC+AGG | - | chr8.1:28081224-28081243 | MS.gene44930:CDS | 50.0% | |
CCCCACCAACCTTGTTAGTT+TGG | + | chr8.1:28079569-28079588 | None:intergenic | 50.0% | |
CTCACTGCCCATTTCTGAGT+AGG | - | chr8.1:28079626-28079645 | MS.gene44930:intron | 50.0% | |
CTTATAACACTGGGGTCCTG+AGG | - | chr8.1:28080730-28080749 | MS.gene44930:intron | 50.0% | |
CTTGAAATGGAGAGGGACGT+TGG | + | chr8.1:28077946-28077965 | None:intergenic | 50.0% | |
GAAGCATGTGGTGTTTGGGA+AGG | - | chr8.1:28078190-28078209 | MS.gene44930:intron | 50.0% | |
GACATGTGTTGGGAGAAGGA+TGG | - | chr8.1:28078865-28078884 | MS.gene44930:intron | 50.0% | |
GATTGTGGGGAGATTGCTGA+AGG | - | chr8.1:28078299-28078318 | MS.gene44930:intron | 50.0% | |
GCAATCACAACATCCTGCTC+CGG | + | chr8.1:28078278-28078297 | None:intergenic | 50.0% | |
GGCCAAACTAACAAGGTTGG+TGG | - | chr8.1:28079564-28079583 | MS.gene44930:intron | 50.0% | |
GGGAAGGTTGTGAAAGGGAT+TGG | - | chr8.1:28078206-28078225 | MS.gene44930:intron | 50.0% | |
GTACGCAATTGCCAGGAAGA+AGG | - | chr8.1:28081262-28081281 | MS.gene44930:CDS | 50.0% | |
GTGCTCTTCTCTGCAAAGTC+AGG | + | chr8.1:28079011-28079030 | None:intergenic | 50.0% | |
TAGGTCTGTTGAGCTTGGTC+CGG | - | chr8.1:28078235-28078254 | MS.gene44930:intron | 50.0% | |
TCGGACTTTGCAATGCACGA+TGG | - | chr8.1:28079835-28079854 | MS.gene44930:intron | 50.0% | |
TGATCTTGATACCAAGCCGG+AGG | - | chr8.1:28078382-28078401 | MS.gene44930:intron | 50.0% | |
TTCACAAGGTGGTAGGTCAC+CGG | + | chr8.1:28079490-28079509 | None:intergenic | 50.0% | |
TTGCTGAAGGGGAGGATGAA+GGG | - | chr8.1:28078312-28078331 | MS.gene44930:intron | 50.0% | |
TTGTGGGGAGATTGCTGAAG+GGG | - | chr8.1:28078301-28078320 | MS.gene44930:intron | 50.0% | |
TTTGACGACACGGTGGAAGA+TGG | + | chr8.1:28077973-28077992 | None:intergenic | 50.0% | |
! | ACTCCCATTGGTGTTTGGAC+CGG | + | chr8.1:28078129-28078148 | None:intergenic | 50.0% |
! | CTTTGGCTTACCAGGGTTGA+AGG | - | chr8.1:28080832-28080851 | MS.gene44930:CDS | 50.0% |
! | GATGGGAAGCATGTGGTGTT+TGG | - | chr8.1:28078185-28078204 | MS.gene44930:intron | 50.0% |
! | GCATTTGGATGGGAAGCATG+TGG | - | chr8.1:28078178-28078197 | MS.gene44930:intron | 50.0% |
! | TGTCCTGTGCCTGTTTTCTC+CGG | - | chr8.1:28079468-28079487 | MS.gene44930:intron | 50.0% |
!! | AGGATGGTGTTGACCAAGGT+CGG | - | chr8.1:28078881-28078900 | MS.gene44930:intron | 50.0% |
!! | GAGAAGGATGGTGTTGACCA+AGG | - | chr8.1:28078877-28078896 | MS.gene44930:intron | 50.0% |
ACCTTGCCCTGTTCTTCAGG+AGG | - | chr8.1:28081227-28081246 | MS.gene44930:CDS | 55.0% | |
ACGAGGACTCCGCATTTGGA+TGG | - | chr8.1:28078167-28078186 | MS.gene44930:intron | 55.0% | |
ACTCAACAACAGCCTCCCTC+AGG | + | chr8.1:28080749-28080768 | None:intergenic | 55.0% | |
AGCTCTGTTTCGCAAAGGCC+AGG | - | chr8.1:28079870-28079889 | MS.gene44930:intron | 55.0% | |
CCTTGCCCTGTTCTTCAGGA+GGG | - | chr8.1:28081228-28081247 | MS.gene44930:CDS | 55.0% | |
CGAGGACTCCGCATTTGGAT+GGG | - | chr8.1:28078168-28078187 | MS.gene44930:intron | 55.0% | |
CTGTTGAGCTTGGTCCGGTT+GGG | - | chr8.1:28078240-28078259 | MS.gene44930:intron | 55.0% | |
CTGTTTCGCAAAGGCCAGGT+TGG | - | chr8.1:28079874-28079893 | MS.gene44930:intron | 55.0% | |
CTTACAGAACCCCCAGACCA+GGG | - | chr8.1:28080416-28080435 | MS.gene44930:intron | 55.0% | |
GGTAGGTCACCGGAGAAAAC+AGG | + | chr8.1:28079480-28079499 | None:intergenic | 55.0% | |
GGTCGATCATTCTCCCCAAC+CGG | + | chr8.1:28078257-28078276 | None:intergenic | 55.0% | |
GGTTGGGGAGAATGATCGAC+CGG | - | chr8.1:28078256-28078275 | MS.gene44930:intron | 55.0% | |
GTTTGGACCGGTATTCGCCA+TGG | + | chr8.1:28078117-28078136 | None:intergenic | 55.0% | |
TCACCGGAGAAAACAGGCAC+AGG | + | chr8.1:28079474-28079493 | None:intergenic | 55.0% | |
TCTGTTGAGCTTGGTCCGGT+TGG | - | chr8.1:28078239-28078258 | MS.gene44930:intron | 55.0% | |
TCTTACAGAACCCCCAGACC+AGG | - | chr8.1:28080415-28080434 | MS.gene44930:intron | 55.0% | |
TGAAGCCTTTGACGACACGG+TGG | + | chr8.1:28077980-28077999 | None:intergenic | 55.0% | |
TGCTGAAGGGGAGGATGAAG+GGG | - | chr8.1:28078313-28078332 | MS.gene44930:intron | 55.0% | |
TGTTGAGCTTGGTCCGGTTG+GGG | - | chr8.1:28078241-28078260 | MS.gene44930:intron | 55.0% | |
TTTCGCCGGTGCAGAGAGAT+CGG | + | chr8.1:28077905-28077924 | None:intergenic | 55.0% | |
! | TCTCTCTGCACCGGCGAAAA+AGG | - | chr8.1:28077906-28077925 | MS.gene44930:intron | 55.0% |
! | TGCACCGGCGAAAAAGGCAT+CGG | - | chr8.1:28077912-28077931 | MS.gene44930:intron | 55.0% |
!! | TGGACCGATGCCTTTTTCGC+CGG | + | chr8.1:28077919-28077938 | None:intergenic | 55.0% |
!!! | GGCGGTTTTGGGAACGACAT+CGG | + | chr8.1:28077874-28077893 | None:intergenic | 55.0% |
ACCGGCGGCGAGTCAATCTA+CGG | - | chr8.1:28078035-28078054 | MS.gene44930:intron | 60.0% | |
AGCCGGAGGAGCTTGAATGG+TGG | - | chr8.1:28078396-28078415 | MS.gene44930:intron | 60.0% | |
AGCTATCCAGAGCGGCATCC+AGG | + | chr8.1:28080580-28080599 | None:intergenic | 60.0% | |
CAATGACCTGGATGCCGCTC+TGG | - | chr8.1:28080571-28080590 | MS.gene44930:intron | 60.0% | |
CCAAGCCGGAGGAGCTTGAA+TGG | - | chr8.1:28078393-28078412 | MS.gene44930:intron | 60.0% | |
CCATTCAAGCTCCTCCGGCT+TGG | + | chr8.1:28078396-28078415 | None:intergenic | 60.0% | |
CCCTCCTGAAGAACAGGGCA+AGG | + | chr8.1:28081231-28081250 | None:intergenic | 60.0% | |
GACGACGAGGACTCCGCATT+TGG | - | chr8.1:28078163-28078182 | MS.gene44930:intron | 60.0% | |
GGAGAATGATCGACCGGAGC+AGG | - | chr8.1:28078262-28078281 | MS.gene44930:intron | 60.0% | |
TAACACTGGGGTCCTGAGGG+AGG | - | chr8.1:28080734-28080753 | MS.gene44930:intron | 60.0% | |
TGGAGAGGGACGTTGGTGTG+TGG | + | chr8.1:28077939-28077958 | None:intergenic | 60.0% | |
TGGGGAGATTGCTGAAGGGG+AGG | - | chr8.1:28078304-28078323 | MS.gene44930:intron | 60.0% | |
!! | AAGCATCGGCGGTGAACTCG+AGG | - | chr8.1:28077824-28077843 | MS.gene44930:CDS | 60.0% |
!! | ACCGTAGATTGACTCGCCGC+CGG | + | chr8.1:28078039-28078058 | None:intergenic | 60.0% |
!! | AGCATCGGCGGTGAACTCGA+GGG | - | chr8.1:28077825-28077844 | MS.gene44930:CDS | 60.0% |
AGGCGGAGATGTCACCGCCT+TGG | + | chr8.1:28078007-28078026 | None:intergenic | 65.0% | |
ATCTCCGCCTCCGACGGAAC+CGG | - | chr8.1:28078017-28078036 | MS.gene44930:intron | 65.0% | |
GGTGACATCTCCGCCTCCGA+CGG | - | chr8.1:28078011-28078030 | MS.gene44930:intron | 65.0% | |
!! | TGACTCGCCGCCGGTTCCGT+CGG | + | chr8.1:28078030-28078049 | None:intergenic | 70.0% |
TCCGCCTCCGACGGAACCGG+CGG | - | chr8.1:28078020-28078039 | MS.gene44930:intron | 75.0% | |
!!! | CTCGCCGCCGGTTCCGTCGG+AGG | + | chr8.1:28078027-28078046 | None:intergenic | 80.0% |
!!! | GCCGCCGGTTCCGTCGGAGG+CGG | + | chr8.1:28078024-28078043 | None:intergenic | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.1 | gene | 28077795 | 28081433 | 28077795 | ID=MS.gene44930 |
chr8.1 | mRNA | 28077795 | 28081433 | 28077795 | ID=MS.gene44930.t1;Parent=MS.gene44930 |
chr8.1 | exon | 28080762 | 28081433 | 28080762 | ID=MS.gene44930.t1.exon1;Parent=MS.gene44930.t1 |
chr8.1 | CDS | 28080762 | 28081433 | 28080762 | ID=cds.MS.gene44930.t1;Parent=MS.gene44930.t1 |
chr8.1 | exon | 28080330 | 28080417 | 28080330 | ID=MS.gene44930.t1.exon2;Parent=MS.gene44930.t1 |
chr8.1 | CDS | 28080330 | 28080417 | 28080330 | ID=cds.MS.gene44930.t1;Parent=MS.gene44930.t1 |
chr8.1 | exon | 28080155 | 28080207 | 28080155 | ID=MS.gene44930.t1.exon3;Parent=MS.gene44930.t1 |
chr8.1 | CDS | 28080155 | 28080207 | 28080155 | ID=cds.MS.gene44930.t1;Parent=MS.gene44930.t1 |
chr8.1 | exon | 28079337 | 28079438 | 28079337 | ID=MS.gene44930.t1.exon4;Parent=MS.gene44930.t1 |
chr8.1 | CDS | 28079337 | 28079438 | 28079337 | ID=cds.MS.gene44930.t1;Parent=MS.gene44930.t1 |
chr8.1 | exon | 28078596 | 28078671 | 28078596 | ID=MS.gene44930.t1.exon5;Parent=MS.gene44930.t1 |
chr8.1 | CDS | 28078596 | 28078671 | 28078596 | ID=cds.MS.gene44930.t1;Parent=MS.gene44930.t1 |
chr8.1 | exon | 28077945 | 28077982 | 28077945 | ID=MS.gene44930.t1.exon6;Parent=MS.gene44930.t1 |
chr8.1 | CDS | 28077945 | 28077982 | 28077945 | ID=cds.MS.gene44930.t1;Parent=MS.gene44930.t1 |
chr8.1 | exon | 28077795 | 28077848 | 28077795 | ID=MS.gene44930.t1.exon7;Parent=MS.gene44930.t1 |
chr8.1 | CDS | 28077795 | 28077848 | 28077795 | ID=cds.MS.gene44930.t1;Parent=MS.gene44930.t1 |
Gene Sequence |
Protein sequence |