Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049413.t1 | XP_013461490.1 | 91.9 | 873 | 68 | 2 | 1 | 872 | 1 | 871 | 0.00E+00 | 1434.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049413.t1 | Q9FHK4 | 39.7 | 131 | 68 | 1 | 641 | 771 | 470 | 589 | 5.9e-17 | 91.3 |
| MS.gene049413.t1 | Q9FHK4 | 41.7 | 60 | 35 | 0 | 1 | 60 | 1 | 60 | 2.1e-06 | 56.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049413.t1 | A0A072VBG6 | 91.9 | 873 | 68 | 2 | 1 | 872 | 1 | 871 | 0.0e+00 | 1434.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049413 | MS.gene050669 | 0.80913 | 2.20E-50 | -1.69E-46 |
| MS.gene049413 | MS.gene050961 | 0.820902 | 5.37E-53 | -1.69E-46 |
| MS.gene049413 | MS.gene051959 | 0.809002 | 2.35E-50 | -1.69E-46 |
| MS.gene049413 | MS.gene051960 | 0.805768 | 1.14E-49 | -1.69E-46 |
| MS.gene049413 | MS.gene052537 | 0.808027 | 3.79E-50 | -1.69E-46 |
| MS.gene049413 | MS.gene054892 | 0.831313 | 1.79E-55 | -1.69E-46 |
| MS.gene049413 | MS.gene054893 | 0.825193 | 5.36E-54 | -1.69E-46 |
| MS.gene049413 | MS.gene057220 | 0.805211 | 1.49E-49 | -1.69E-46 |
| MS.gene049413 | MS.gene060413 | 0.802398 | 5.72E-49 | -1.69E-46 |
| MS.gene049413 | MS.gene061682 | 0.831381 | 1.72E-55 | -1.69E-46 |
| MS.gene049413 | MS.gene061729 | 0.800523 | 1.39E-48 | -1.69E-46 |
| MS.gene049413 | MS.gene063094 | 0.840148 | 1.04E-57 | -1.69E-46 |
| MS.gene049413 | MS.gene063691 | 0.830458 | 2.90E-55 | -1.69E-46 |
| MS.gene049413 | MS.gene064415 | 0.816644 | 4.97E-52 | -1.69E-46 |
| MS.gene049413 | MS.gene064638 | 0.810022 | 1.42E-50 | -1.69E-46 |
| MS.gene049413 | MS.gene064844 | 0.820109 | 8.16E-53 | -1.69E-46 |
| MS.gene049413 | MS.gene06543 | 0.948316 | 1.20E-106 | -1.69E-46 |
| MS.gene049413 | MS.gene066879 | 0.800338 | 1.51E-48 | -1.69E-46 |
| MS.gene049413 | MS.gene067477 | 0.806095 | 9.72E-50 | -1.69E-46 |
| MS.gene049413 | MS.gene06788 | 0.964591 | 1.61E-123 | -1.69E-46 |
| MS.gene049413 | MS.gene068282 | 0.800161 | 1.64E-48 | -1.69E-46 |
| MS.gene049413 | MS.gene06846 | 0.812306 | 4.53E-51 | -1.69E-46 |
| MS.gene049413 | MS.gene068941 | 0.801068 | 1.07E-48 | -1.69E-46 |
| MS.gene049413 | MS.gene070014 | 0.812863 | 3.42E-51 | -1.69E-46 |
| MS.gene049413 | MS.gene071703 | 0.822537 | 2.25E-53 | -1.69E-46 |
| MS.gene049413 | MS.gene071949 | 0.804582 | 2.02E-49 | -1.69E-46 |
| MS.gene049413 | MS.gene072325 | 0.80817 | 3.53E-50 | -1.69E-46 |
| MS.gene049413 | MS.gene072326 | 0.815491 | 9.00E-52 | -1.69E-46 |
| MS.gene049413 | MS.gene21437 | 0.805667 | 1.20E-49 | -1.69E-46 |
| MS.gene049413 | MS.gene22661 | 0.822656 | 2.11E-53 | -1.69E-46 |
| MS.gene049413 | MS.gene25879 | 0.839084 | 1.96E-57 | -1.69E-46 |
| MS.gene049413 | MS.gene29036 | 0.803505 | 3.38E-49 | -1.69E-46 |
| MS.gene049413 | MS.gene29096 | 0.802175 | 6.36E-49 | -1.69E-46 |
| MS.gene049413 | MS.gene30961 | 0.807503 | 4.90E-50 | -1.69E-46 |
| MS.gene049413 | MS.gene32929 | 0.801881 | 7.30E-49 | -1.69E-46 |
| MS.gene049413 | MS.gene33741 | 0.814208 | 1.73E-51 | -1.69E-46 |
| MS.gene049413 | MS.gene33742 | 0.82149 | 3.93E-53 | -1.69E-46 |
| MS.gene049413 | MS.gene36268 | 0.807604 | 4.66E-50 | -1.69E-46 |
| MS.gene049413 | MS.gene36865 | 0.802667 | 5.03E-49 | -1.69E-46 |
| MS.gene049413 | MS.gene36866 | 0.820942 | 5.25E-53 | -1.69E-46 |
| MS.gene049413 | MS.gene39401 | 0.809348 | 1.98E-50 | -1.69E-46 |
| MS.gene049413 | MS.gene41022 | 0.821704 | 3.51E-53 | -1.69E-46 |
| MS.gene049413 | MS.gene43381 | 0.837865 | 4.04E-57 | -1.69E-46 |
| MS.gene049413 | MS.gene43937 | 0.815364 | 9.60E-52 | -1.69E-46 |
| MS.gene049413 | MS.gene45115 | 0.818399 | 2.00E-52 | -1.69E-46 |
| MS.gene049413 | MS.gene45398 | 0.80037 | 1.49E-48 | -1.69E-46 |
| MS.gene049413 | MS.gene54123 | 0.833048 | 6.67E-56 | -1.69E-46 |
| MS.gene049413 | MS.gene56623 | 0.804364 | 2.24E-49 | -1.69E-46 |
| MS.gene049413 | MS.gene59032 | 0.812906 | 3.35E-51 | -1.69E-46 |
| MS.gene049413 | MS.gene68141 | 0.838355 | 3.02E-57 | -1.69E-46 |
| MS.gene049413 | MS.gene69750 | 0.819424 | 1.17E-52 | -1.69E-46 |
| MS.gene049413 | MS.gene69852 | 0.809951 | 1.47E-50 | -1.69E-46 |
| MS.gene049413 | MS.gene70365 | 0.822727 | 2.03E-53 | -1.69E-46 |
| MS.gene049413 | MS.gene71511 | 0.811056 | 8.47E-51 | -1.69E-46 |
| MS.gene049413 | MS.gene76159 | 0.805783 | 1.13E-49 | -1.69E-46 |
| MS.gene049413 | MS.gene80821 | 0.805627 | 1.22E-49 | -1.69E-46 |
| MS.gene049413 | MS.gene82743 | 0.821769 | 3.38E-53 | -1.69E-46 |
| MS.gene049413 | MS.gene83853 | 0.820247 | 7.59E-53 | -1.69E-46 |
| MS.gene049413 | MS.gene84162 | 0.805853 | 1.09E-49 | -1.69E-46 |
| MS.gene049413 | MS.gene84733 | 0.801997 | 6.91E-49 | -1.69E-46 |
| MS.gene049413 | MS.gene84734 | 0.805779 | 1.13E-49 | -1.69E-46 |
| MS.gene049413 | MS.gene85281 | 0.801638 | 8.19E-49 | -1.69E-46 |
| MS.gene049413 | MS.gene86139 | 0.808913 | 2.45E-50 | -1.69E-46 |
| MS.gene049413 | MS.gene89702 | 0.81659 | 5.11E-52 | -1.69E-46 |
| MS.gene049413 | MS.gene92076 | 0.845728 | 3.39E-59 | -1.69E-46 |
| MS.gene049413 | MS.gene93163 | 0.818235 | 2.18E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049413.t1 | MTR_3g093780 | 94.387 | 873 | 46 | 2 | 1 | 872 | 1 | 871 | 0.0 | 1680 |
| MS.gene049413.t1 | MTR_5g068060 | 36.449 | 856 | 374 | 32 | 72 | 870 | 197 | 939 | 2.52e-124 | 399 |
| MS.gene049413.t1 | MTR_5g068060 | 52.128 | 94 | 43 | 2 | 1 | 92 | 1 | 94 | 3.79e-17 | 87.0 |
| MS.gene049413.t1 | MTR_7g107300 | 60.465 | 129 | 44 | 3 | 460 | 582 | 4 | 131 | 2.02e-37 | 138 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049413.t1 | AT5G05190 | 49.398 | 83 | 42 | 0 | 641 | 723 | 470 | 552 | 1.21e-20 | 97.8 |
| MS.gene049413.t1 | AT3G56410 | 45.714 | 70 | 38 | 0 | 647 | 716 | 223 | 292 | 8.32e-13 | 73.2 |
| MS.gene049413.t1 | AT3G56410 | 45.714 | 70 | 38 | 0 | 647 | 716 | 312 | 381 | 9.77e-13 | 73.2 |
| MS.gene049413.t1 | AT3G56410 | 45.714 | 70 | 38 | 0 | 647 | 716 | 359 | 428 | 1.03e-12 | 72.8 |
Find 192 sgRNAs with CRISPR-Local
Find 224 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTCATATTATGATGATTA+TGG | 0.138733 | 3.1:+75044492 | MS.gene049413:CDS |
| GCAGATGCGGTGTTGATTTC+TGG | 0.149630 | 3.1:+75042839 | MS.gene049413:CDS |
| GAAATCACTGAAACTAATTT+TGG | 0.164374 | 3.1:+75042797 | MS.gene049413:CDS |
| TGTAACTGGCTTCTCTTTAT+TGG | 0.169718 | 3.1:-75042879 | None:intergenic |
| ACATTTAACTATCCGAATTT+TGG | 0.174552 | 3.1:-75041784 | None:intergenic |
| TCACAGTGAGTGATGTTATT+TGG | 0.210386 | 3.1:-75042650 | None:intergenic |
| TCAAAGTTTAATGGTGTTCT+TGG | 0.238441 | 3.1:+75043283 | MS.gene049413:CDS |
| GTTTCAGTGATTTCCATTTC+AGG | 0.261394 | 3.1:-75042788 | None:intergenic |
| GATCATAGTTCAAAGTTTAA+TGG | 0.262570 | 3.1:+75043274 | MS.gene049413:CDS |
| GGAAGAAGTTGCCGGCATTT+AGG | 0.282712 | 3.1:-75041807 | None:intergenic |
| AATCCTGAAGTGGAAATTAT+TGG | 0.286338 | 3.1:+75042911 | MS.gene049413:CDS |
| TCAAGAGAGTGTTATTTAGA+TGG | 0.287618 | 3.1:+75042503 | MS.gene049413:CDS |
| GGATTTGCACCTTCTGTAAC+TGG | 0.294631 | 3.1:-75042893 | None:intergenic |
| GAACAAATTAAGTCCTCTTT+TGG | 0.307285 | 3.1:-75042716 | None:intergenic |
| TTCCAGTAATTTCCCCTTCA+AGG | 0.315354 | 3.1:-75043048 | None:intergenic |
| TTTCCAATAATTTCCACTTC+AGG | 0.322328 | 3.1:-75042914 | None:intergenic |
| TGCCTTCTGAGTGACAATTT+AGG | 0.324245 | 3.1:-75042605 | None:intergenic |
| TTTCATATTATGATGATTAT+GGG | 0.327417 | 3.1:+75044493 | MS.gene049413:CDS |
| TGGAGCTGATTTATCACTAT+TGG | 0.334684 | 3.1:-75043014 | None:intergenic |
| TACAGCTAAGAAACAAAGTT+TGG | 0.337502 | 3.1:+75042334 | MS.gene049413:intron |
| ATTATTGGAAATGATTTAGA+AGG | 0.342099 | 3.1:+75042926 | MS.gene049413:CDS |
| ATTGAGGAGATAAGTAATAA+TGG | 0.344048 | 3.1:+75042674 | MS.gene049413:CDS |
| ATAGCTGATTGGTCATTGTT+AGG | 0.346593 | 3.1:-75043148 | None:intergenic |
| TGCATTGATTTCTTGCATAC+TGG | 0.352905 | 3.1:-75042372 | None:intergenic |
| TGTTGTGTCCACTTCAGATT+TGG | 0.354447 | 3.1:-75043179 | None:intergenic |
| CTTGTTGCTTCAGCTGAATA+AGG | 0.358091 | 3.1:-75043943 | None:intergenic |
| AGCTCCTCGTATGGGGATCT+TGG | 0.360440 | 3.1:+75043421 | MS.gene049413:CDS |
| GTTGAGCTAGGAGAGACATT+TGG | 0.361833 | 3.1:-75044606 | None:intergenic |
| TCATCATGCACTCCATTTGA+TGG | 0.364226 | 3.1:-75043622 | None:intergenic |
| AACCTTGAAGGGGAAATTAC+TGG | 0.369393 | 3.1:+75043046 | MS.gene049413:CDS |
| TTGAGCTAGGAGAGACATTT+GGG | 0.377528 | 3.1:-75044605 | None:intergenic |
| TTCATTACAAAGACCAAAAG+AGG | 0.384209 | 3.1:+75042703 | MS.gene049413:CDS |
| ATAATCATCATAATATGAAA+TGG | 0.389072 | 3.1:-75044490 | None:intergenic |
| CAGGAAATTGTCAGCAGAAA+AGG | 0.389892 | 3.1:+75044728 | MS.gene049413:CDS |
| CCTTCAAGGTTCGTACCAAC+TGG | 0.397424 | 3.1:-75043034 | None:intergenic |
| TTTCCTGGTTTCAGACATAC+TGG | 0.398983 | 3.1:-75044712 | None:intergenic |
| CTGTGGTGAGGAAATACTTA+AGG | 0.400170 | 3.1:+75044148 | MS.gene049413:CDS |
| GATAGGGGACAGACCTGAAA+TGG | 0.402925 | 3.1:+75042775 | MS.gene049413:CDS |
| TATGACAAATCAGCTCTGAT+AGG | 0.403629 | 3.1:+75042758 | MS.gene049413:CDS |
| CTCTCCTAGCTCAACATTCA+AGG | 0.405053 | 3.1:+75044614 | MS.gene049413:CDS |
| GCCCCTCTTATCACTTTACT+TGG | 0.409919 | 3.1:-75044804 | None:intergenic |
| CTGTGCTGTCTTTCATGACA+TGG | 0.414712 | 3.1:-75043480 | None:intergenic |
| TCCAACATGAAGATTTATAC+AGG | 0.415572 | 3.1:+75044043 | MS.gene049413:CDS |
| AACATATTTACCACCATTCA+AGG | 0.420023 | 3.1:-75044580 | None:intergenic |
| GTTCACAGACGAAGAAGAAC+TGG | 0.424525 | 3.1:+75042565 | MS.gene049413:CDS |
| ACAGAATATCCTTGAGGCTC+TGG | 0.425857 | 3.1:-75041828 | None:intergenic |
| ATTTGTTCATCTGATGAAGA+TGG | 0.427120 | 3.1:+75042731 | MS.gene049413:CDS |
| GTAAGGTGGTTACCAAAATT+CGG | 0.427969 | 3.1:+75041772 | MS.gene049413:CDS |
| TCTTCGTCTGTGAACTTGAA+TGG | 0.431704 | 3.1:-75042557 | None:intergenic |
| CAAGAAATCAATGCAGCTCC+TGG | 0.432286 | 3.1:+75042380 | MS.gene049413:CDS |
| CCTTTCTCATCGAATACTAT+AGG | 0.433792 | 3.1:+75044366 | MS.gene049413:CDS |
| GAGTGTTATTTAGATGGAAA+TGG | 0.434349 | 3.1:+75042509 | MS.gene049413:CDS |
| TCGAGAATGCCTTACAGATC+AGG | 0.435054 | 3.1:+75043583 | MS.gene049413:CDS |
| TCCGCGAGTACTTATGCCTT+TGG | 0.441596 | 3.1:-75043918 | None:intergenic |
| GGAGTAGAAGACTTGAATAA+TGG | 0.442556 | 3.1:+75042947 | MS.gene049413:CDS |
| CCAGTTGGTACGAACCTTGA+AGG | 0.447258 | 3.1:+75043034 | MS.gene049413:CDS |
| CTTAAGGGACAAACATAACT+TGG | 0.447454 | 3.1:+75044164 | MS.gene049413:CDS |
| TCCTCGGAAAGATAGTTTGA+AGG | 0.454231 | 3.1:+75042463 | MS.gene049413:CDS |
| GAAGGTCATGGCTATGGTAT+TGG | 0.459591 | 3.1:-75043822 | None:intergenic |
| CACTAACCACCTCGCTTCTA+CGG | 0.460505 | 3.1:-75044410 | None:intergenic |
| CGTAGAAGCGAGGTGGTTAG+TGG | 0.462545 | 3.1:+75044411 | MS.gene049413:CDS |
| CAATGACCAATCAGCTATAG+AGG | 0.463430 | 3.1:+75043153 | MS.gene049413:CDS |
| TATATTTGAAGGAATATGTC+TGG | 0.464306 | 3.1:+75041750 | None:intergenic |
| GAGGTAAAGCCTCCACAAAA+AGG | 0.465708 | 3.1:+75044750 | MS.gene049413:CDS |
| ACGGATACAGATGAATCAAC+TGG | 0.473634 | 3.1:+75044681 | MS.gene049413:CDS |
| CAACAAATTCATCCCTTGAA+TGG | 0.475924 | 3.1:+75044567 | MS.gene049413:CDS |
| ATATGAGCTTCTTGTGGTTG+AGG | 0.478521 | 3.1:-75043326 | None:intergenic |
| TGGTATCCTCTATAGCTGAT+TGG | 0.481238 | 3.1:-75043159 | None:intergenic |
| ACACCAAGTAAAGTGATAAG+AGG | 0.482329 | 3.1:+75044801 | MS.gene049413:CDS |
| TTGCTAATAGCTCCTCGTAT+GGG | 0.484351 | 3.1:+75043413 | MS.gene049413:CDS |
| ATGACAAATCAGCTCTGATA+GGG | 0.484835 | 3.1:+75042759 | MS.gene049413:CDS |
| CTTTCATAGCCTGATCTGTA+AGG | 0.485476 | 3.1:-75043592 | None:intergenic |
| TAATCATCATAATATGAAAT+GGG | 0.485762 | 3.1:-75044489 | None:intergenic |
| TGTGGTGAGGAAATACTTAA+GGG | 0.486354 | 3.1:+75044149 | MS.gene049413:CDS |
| GTTATTTGGACCACCTTTGT+TGG | 0.486422 | 3.1:-75042636 | None:intergenic |
| CATCACTCACTGTGAGATTG+AGG | 0.490880 | 3.1:+75042658 | MS.gene049413:CDS |
| TTCTGCTGGTGTATCTTACA+AGG | 0.491674 | 3.1:+75043780 | MS.gene049413:CDS |
| GCTGAAGGAATGACCAGAAA+AGG | 0.496200 | 3.1:+75043382 | MS.gene049413:CDS |
| AGAAGAACTGGAAAGTGAGT+TGG | 0.497447 | 3.1:+75042577 | MS.gene049413:CDS |
| AGGTACTCTTCATAAACTCA+TGG | 0.498632 | 3.1:+75044770 | MS.gene049413:CDS |
| TTTGTTGTGTAAGAGAAAGA+AGG | 0.499054 | 3.1:-75044551 | None:intergenic |
| TAAGAGGGGCATCTTGTTGA+AGG | 0.499268 | 3.1:+75044817 | MS.gene049413:CDS |
| GAAAGTGGCAGGCCATCAAA+TGG | 0.507500 | 3.1:+75043610 | MS.gene049413:CDS |
| GTGTACAAGTGTGGTGGATG+TGG | 0.512363 | 3.1:+75041849 | MS.gene049413:CDS |
| GCATATTGATAGAAAACGTC+AGG | 0.513186 | 3.1:+75042436 | MS.gene049413:CDS |
| AAGGAATATGTCTGGTAAGG+TGG | 0.515393 | 3.1:+75041758 | None:intergenic |
| CGACATCACAAGCCAGTGGC+AGG | 0.515436 | 3.1:+75044192 | MS.gene049413:CDS |
| CTTGATCACTCTAGATGTAT+CGG | 0.516311 | 3.1:+75043868 | MS.gene049413:CDS |
| GCCATGACCTTCATGAGGGA+AGG | 0.519968 | 3.1:+75043833 | MS.gene049413:CDS |
| TCCTCTCCTTCTCCCTCTTG+TGG | 0.520199 | 3.1:-75043109 | None:intergenic |
| AATCTGCAGGTAGCTGAAGC+AGG | 0.520263 | 3.1:-75044251 | None:intergenic |
| CGAGTACTTATGCCTTTGGC+GGG | 0.521127 | 3.1:-75043914 | None:intergenic |
| GAGGCTCTGGAAGAAGTTGC+CGG | 0.525192 | 3.1:-75041815 | None:intergenic |
| ACCTGTATAAATCTTCATGT+TGG | 0.526192 | 3.1:-75044044 | None:intergenic |
| GTTGATTCATCTGTATCCGT+TGG | 0.526902 | 3.1:-75044678 | None:intergenic |
| TCTGGTCATTCCTTCAGCAA+CGG | 0.529453 | 3.1:-75043377 | None:intergenic |
| ATTACTGGAAACAATATAGC+AGG | 0.531297 | 3.1:+75043061 | MS.gene049413:CDS |
| GGATGTGGCACTGACCTTCA+AGG | 0.532393 | 3.1:+75041864 | MS.gene049413:CDS |
| TTTGGAAACTTGTCGCTAGA+GGG | 0.532723 | 3.1:+75042815 | MS.gene049413:CDS |
| AAAGGAGCTCCACCTGCCAC+TGG | 0.533821 | 3.1:-75044204 | None:intergenic |
| CCTCATGAAGGTCATGGCTA+TGG | 0.534051 | 3.1:-75043828 | None:intergenic |
| TTTGCCTTGAATGTTGAGCT+AGG | 0.534758 | 3.1:-75044618 | None:intergenic |
| TAGTTAAATGTCCTAAATGC+CGG | 0.534878 | 3.1:+75041796 | MS.gene049413:CDS |
| TAATGCAATCGCGGCTCCAA+CGG | 0.535239 | 3.1:+75044662 | MS.gene049413:CDS |
| CCTATAGTATTCGATGAGAA+AGG | 0.535878 | 3.1:-75044366 | None:intergenic |
| TTGAAGGAATATGTCTGGTA+AGG | 0.536667 | 3.1:+75041755 | None:intergenic |
| CATTTATGACAAGTGACAAA+AGG | 0.537261 | 3.1:-75044222 | None:intergenic |
| CCTCCAGTATGTCTGAAACC+AGG | 0.539270 | 3.1:+75044709 | MS.gene049413:CDS |
| CAGTTGGTACGAACCTTGAA+GGG | 0.541921 | 3.1:+75043035 | MS.gene049413:CDS |
| CACCAAGTAAAGTGATAAGA+GGG | 0.542812 | 3.1:+75044802 | MS.gene049413:CDS |
| AAATGCAAGCAATGAGATTG+TGG | 0.546365 | 3.1:+75043225 | MS.gene049413:CDS |
| GATCAGGCTATGAAAGTGGC+AGG | 0.549263 | 3.1:+75043599 | MS.gene049413:CDS |
| CTCGCGTGAGGACACTGACC+AGG | 0.551465 | 3.1:+75043669 | MS.gene049413:CDS |
| GCGAGTACTTATGCCTTTGG+CGG | 0.552548 | 3.1:-75043915 | None:intergenic |
| TGCTAATAGCTCCTCGTATG+GGG | 0.553250 | 3.1:+75043414 | MS.gene049413:CDS |
| CTTGCTAATAGCTCCTCGTA+TGG | 0.554567 | 3.1:+75043412 | MS.gene049413:CDS |
| TGTATCGGAAGATGTAATCA+TGG | 0.555125 | 3.1:+75043883 | MS.gene049413:CDS |
| GAGAAAACCTTCCCTCATGA+AGG | 0.564438 | 3.1:-75043840 | None:intergenic |
| ATCAAATGGAGTGCATGATG+AGG | 0.568884 | 3.1:+75043624 | MS.gene049413:CDS |
| ATGGAATTGCGTCCCGCCAA+AGG | 0.570672 | 3.1:+75043902 | MS.gene049413:CDS |
| TAATGGCAATTTGCCACTAG+AGG | 0.571741 | 3.1:+75042964 | MS.gene049413:CDS |
| CTGCTGGTGTATCTTACAAG+GGG | 0.572567 | 3.1:+75043782 | MS.gene049413:CDS |
| TACAGATCAGGCTATGAAAG+TGG | 0.576466 | 3.1:+75043595 | MS.gene049413:CDS |
| TGCAGCTCCTGGAAAAGCAT+CGG | 0.577154 | 3.1:+75042391 | MS.gene049413:CDS |
| AAAGAGAAGCCAGTTACAGA+AGG | 0.579951 | 3.1:+75042884 | MS.gene049413:CDS |
| GCCACAAGAGGGAGAAGGAG+AGG | 0.582814 | 3.1:+75043108 | MS.gene049413:CDS |
| ACAAATGGAAGAGTTTCTGC+TGG | 0.583470 | 3.1:+75043766 | MS.gene049413:CDS |
| AGAGGATACCAAATCTGAAG+TGG | 0.584314 | 3.1:+75043171 | MS.gene049413:CDS |
| CATCACAAGCCAGTGGCAGG+TGG | 0.586203 | 3.1:+75044195 | MS.gene049413:CDS |
| ACATATTTACCACCATTCAA+GGG | 0.586967 | 3.1:-75044579 | None:intergenic |
| ACCTTCCCTCATGAAGGTCA+TGG | 0.587046 | 3.1:-75043834 | None:intergenic |
| GGTATTGGTATGCAGAACTA+CGG | 0.587389 | 3.1:-75043807 | None:intergenic |
| ACTATGATCTCTTAATTCTG+TGG | 0.588099 | 3.1:-75043260 | None:intergenic |
| GGTACTCTTCATAAACTCAT+GGG | 0.590389 | 3.1:+75044771 | MS.gene049413:CDS |
| TTATAAAGGAGAAAATCTGC+AGG | 0.591353 | 3.1:-75044264 | None:intergenic |
| GCCTTCAAACTATCTTTCCG+AGG | 0.593288 | 3.1:-75042464 | None:intergenic |
| GTCGCTAGAGGGAGCAGATG+CGG | 0.597570 | 3.1:+75042826 | MS.gene049413:CDS |
| AATGCTTACACCGTTGCTGA+AGG | 0.598914 | 3.1:+75043367 | MS.gene049413:CDS |
| TAATGGAAAATGGCCACAAG+AGG | 0.599730 | 3.1:+75043096 | MS.gene049413:CDS |
| TACCTAAATTGTCACTCAGA+AGG | 0.601587 | 3.1:+75042603 | MS.gene049413:CDS |
| GGAATGACCAGAAAAGGTAA+AGG | 0.602415 | 3.1:+75043388 | MS.gene049413:CDS |
| AGAAGGTGCAAATCCTGAAG+TGG | 0.603285 | 3.1:+75042901 | MS.gene049413:CDS |
| TCTGCTGGTGTATCTTACAA+GGG | 0.604895 | 3.1:+75043781 | MS.gene049413:CDS |
| CTACGGTGAAGCTCACGAGA+TGG | 0.605302 | 3.1:-75044393 | None:intergenic |
| TCAAATGGAGTGCATGATGA+GGG | 0.605561 | 3.1:+75043625 | MS.gene049413:CDS |
| TATATGAGTGAGGAAACAAA+TGG | 0.606561 | 3.1:+75043751 | MS.gene049413:CDS |
| CAAATTCATCCCTTGAATGG+TGG | 0.607888 | 3.1:+75044570 | MS.gene049413:CDS |
| GATCTGTAAGGCATTCTCGA+TGG | 0.608638 | 3.1:-75043580 | None:intergenic |
| GAAAACGTCAGGTTCTTCCT+CGG | 0.608765 | 3.1:+75042447 | MS.gene049413:CDS |
| CTAAGACACGGGAACAACAA+TGG | 0.613621 | 3.1:-75043996 | None:intergenic |
| CACAACATGGTAATTCACGT+TGG | 0.615905 | 3.1:+75043530 | MS.gene049413:CDS |
| ACAAGAAGCTCATATATCAC+AGG | 0.619189 | 3.1:+75043334 | MS.gene049413:CDS |
| TCTTTCACACGACTCGCGTG+AGG | 0.622099 | 3.1:+75043657 | MS.gene049413:CDS |
| GAAATTGTCAGCAGAAAAGG+AGG | 0.624190 | 3.1:+75044731 | MS.gene049413:CDS |
| TGTGATATATGAGCTTCTTG+TGG | 0.626127 | 3.1:-75043332 | None:intergenic |
| AAATGGCCACAAGAGGGAGA+AGG | 0.626477 | 3.1:+75043103 | MS.gene049413:CDS |
| CCAGAATTAAAATCCTCTAG+TGG | 0.627898 | 3.1:-75042977 | None:intergenic |
| GGCATAGGGCTACTGTGGTG+AGG | 0.627962 | 3.1:+75044136 | MS.gene049413:CDS |
| AGAAGAATCTGCTAAGACAC+GGG | 0.628845 | 3.1:-75044007 | None:intergenic |
| AATGGAAAATGGCCACAAGA+GGG | 0.631353 | 3.1:+75043097 | MS.gene049413:CDS |
| GTATGTCACAAGCTGAAATG+TGG | 0.632938 | 3.1:+75044291 | MS.gene049413:CDS |
| CATAGAGTGTCCAACAAAGG+TGG | 0.635172 | 3.1:+75042626 | MS.gene049413:CDS |
| TCTGTTTCACTGAAGCATTG+TGG | 0.635814 | 3.1:-75044099 | None:intergenic |
| GAGAAGAATCTGCTAAGACA+CGG | 0.636353 | 3.1:-75044008 | None:intergenic |
| TCAGAGGCATAGGGCTACTG+TGG | 0.638205 | 3.1:+75044131 | MS.gene049413:CDS |
| TGACAAATCAGCTCTGATAG+GGG | 0.640991 | 3.1:+75042760 | MS.gene049413:CDS |
| GAAATGTGGTAAATGTTCAG+AGG | 0.642119 | 3.1:+75044305 | MS.gene049413:CDS |
| TCTGAAGTGGACACAACAGA+AGG | 0.642126 | 3.1:+75043184 | MS.gene049413:CDS |
| GATGGAAATGGTGAGTACAA+TGG | 0.642186 | 3.1:+75042521 | MS.gene049413:CDS |
| CAACTTCTTCCAGAGCCTCA+AGG | 0.642945 | 3.1:+75041819 | MS.gene049413:CDS |
| CCTGGTTTCAGACATACTGG+AGG | 0.645462 | 3.1:-75044709 | None:intergenic |
| CCATAGCCATGACCTTCATG+AGG | 0.648193 | 3.1:+75043828 | MS.gene049413:CDS |
| AGTGATAAATCAGCTCCAGT+TGG | 0.651091 | 3.1:+75043019 | MS.gene049413:CDS |
| AGGCATAGAGTGTCCAACAA+AGG | 0.653537 | 3.1:+75042623 | MS.gene049413:CDS |
| CAAGACTCGCTATATGAGTG+AGG | 0.657867 | 3.1:+75043741 | MS.gene049413:CDS |
| CATAGCCATGACCTTCATGA+GGG | 0.658552 | 3.1:+75043829 | MS.gene049413:CDS |
| TATTCTGTGTACAAGTGTGG+TGG | 0.659670 | 3.1:+75041843 | MS.gene049413:CDS |
| GGTAACAAGAATGATCTACA+TGG | 0.670834 | 3.1:-75043975 | None:intergenic |
| TGAGCTTCACCGTAGAAGCG+AGG | 0.674280 | 3.1:+75044401 | MS.gene049413:CDS |
| AGTTGGTACGAACCTTGAAG+GGG | 0.674859 | 3.1:+75043036 | MS.gene049413:CDS |
| GCCAAAGGCATAAGTACTCG+CGG | 0.688085 | 3.1:+75043917 | MS.gene049413:CDS |
| TGTTCCAAGATCCCCATACG+AGG | 0.688484 | 3.1:-75043425 | None:intergenic |
| CATACGAGGAGCTATTAGCA+AGG | 0.689093 | 3.1:-75043411 | None:intergenic |
| ACCAAGTAAAGTGATAAGAG+GGG | 0.689921 | 3.1:+75044803 | MS.gene049413:CDS |
| GGATATTCTGTGTACAAGTG+TGG | 0.693148 | 3.1:+75041840 | MS.gene049413:CDS |
| TAGTTGACATGAGATACTGA+TGG | 0.696878 | 3.1:-75044444 | None:intergenic |
| GGAAATGGTGAGTACAATGG+CGG | 0.699790 | 3.1:+75042524 | MS.gene049413:CDS |
| GTGTTGGACAATACACAACA+TGG | 0.710351 | 3.1:+75043517 | MS.gene049413:CDS |
| TAAGCGACATCACAAGCCAG+TGG | 0.712041 | 3.1:+75044188 | MS.gene049413:CDS |
| TTGTACACAGAATATCCTTG+AGG | 0.719345 | 3.1:-75041834 | None:intergenic |
| TCATGTTGGAAATGAACACG+TGG | 0.723896 | 3.1:-75044030 | None:intergenic |
| GCTTCACCGTAGAAGCGAGG+TGG | 0.726929 | 3.1:+75044404 | MS.gene049413:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAATTAAATAATGGAAAA+TGG | + | chr3.1:75043086-75043105 | MS.gene049413:CDS | 10.0% |
| !! | ATAATCATCATAATATGAAA+TGG | - | chr3.1:75044493-75044512 | None:intergenic | 15.0% |
| !! | ATTAATATCATTATTTGAAC+CGG | - | chr3.1:75042249-75042268 | None:intergenic | 15.0% |
| !! | ATTTCATATTATGATGATTA+TGG | + | chr3.1:75044492-75044511 | MS.gene049413:CDS | 15.0% |
| !! | GAAATTTATATCAATCAAAT+AGG | - | chr3.1:75042115-75042134 | None:intergenic | 15.0% |
| !! | TAATCATCATAATATGAAAT+GGG | - | chr3.1:75044492-75044511 | None:intergenic | 15.0% |
| !! | TTTCATATTATGATGATTAT+GGG | + | chr3.1:75044493-75044512 | MS.gene049413:CDS | 15.0% |
| !! | ATTATTGGAAATGATTTAGA+AGG | + | chr3.1:75042926-75042945 | MS.gene049413:CDS | 20.0% |
| ! | AAAAATGAAACTGATGAGAA+TGG | + | chr3.1:75043693-75043712 | MS.gene049413:CDS | 25.0% |
| ! | AATTCTCATGTAAATGTTGT+TGG | - | chr3.1:75042187-75042206 | None:intergenic | 25.0% |
| ! | AGTGAATAAAAACAAAGTGT+TGG | + | chr3.1:75043501-75043520 | MS.gene049413:CDS | 25.0% |
| ! | ATTGAGGAGATAAGTAATAA+TGG | + | chr3.1:75042674-75042693 | MS.gene049413:CDS | 25.0% |
| ! | GATCATAGTTCAAAGTTTAA+TGG | + | chr3.1:75043274-75043293 | MS.gene049413:CDS | 25.0% |
| ! | GCAGGAGAAAAATTAAATAA+TGG | + | chr3.1:75043079-75043098 | MS.gene049413:CDS | 25.0% |
| ! | TATAACAGAATACATGACAT+TGG | - | chr3.1:75042077-75042096 | None:intergenic | 25.0% |
| ! | TGAGAATTTCTATGAATATC+CGG | + | chr3.1:75042227-75042246 | MS.gene049413:intron | 25.0% |
| !! | AATTAGATTTTTCACCTTGA+AGG | - | chr3.1:75041881-75041900 | None:intergenic | 25.0% |
| !! | ACATTTAACTATCCGAATTT+TGG | - | chr3.1:75041787-75041806 | None:intergenic | 25.0% |
| !! | AGTAAAATTGAAGAGTACAA+TGG | - | chr3.1:75041917-75041936 | None:intergenic | 25.0% |
| !! | GAAATCACTGAAACTAATTT+TGG | + | chr3.1:75042797-75042816 | MS.gene049413:CDS | 25.0% |
| !! | TGTGACATACTCTTTTATAA+AGG | - | chr3.1:75044281-75044300 | None:intergenic | 25.0% |
| !!! | AAGATATTTTAATGCAATCG+CGG | + | chr3.1:75044653-75044672 | MS.gene049413:CDS | 25.0% |
| AACATATTTACCACCATTCA+AGG | - | chr3.1:75044583-75044602 | None:intergenic | 30.0% | |
| AATCCTGAAGTGGAAATTAT+TGG | + | chr3.1:75042911-75042930 | MS.gene049413:CDS | 30.0% | |
| ACATATTTACCACCATTCAA+GGG | - | chr3.1:75044582-75044601 | None:intergenic | 30.0% | |
| ACCTGTATAAATCTTCATGT+TGG | - | chr3.1:75044047-75044066 | None:intergenic | 30.0% | |
| ACTATGATCTCTTAATTCTG+TGG | - | chr3.1:75043263-75043282 | None:intergenic | 30.0% | |
| ATTACTGGAAACAATATAGC+AGG | + | chr3.1:75043061-75043080 | MS.gene049413:CDS | 30.0% | |
| ATTTGTTCATCTGATGAAGA+TGG | + | chr3.1:75042731-75042750 | MS.gene049413:CDS | 30.0% | |
| CATTTATGACAAGTGACAAA+AGG | - | chr3.1:75044225-75044244 | None:intergenic | 30.0% | |
| CTCTTGTAATAGTTTGACAT+TGG | + | chr3.1:75042010-75042029 | MS.gene049413:intron | 30.0% | |
| TACAGCTAAGAAACAAAGTT+TGG | + | chr3.1:75042334-75042353 | MS.gene049413:intron | 30.0% | |
| TAGTTAAATGTCCTAAATGC+CGG | + | chr3.1:75041796-75041815 | MS.gene049413:CDS | 30.0% | |
| TATATGAGTGAGGAAACAAA+TGG | + | chr3.1:75043751-75043770 | MS.gene049413:CDS | 30.0% | |
| TCAAAGTTTAATGGTGTTCT+TGG | + | chr3.1:75043283-75043302 | MS.gene049413:CDS | 30.0% | |
| TCCAACATGAAGATTTATAC+AGG | + | chr3.1:75044043-75044062 | MS.gene049413:CDS | 30.0% | |
| TTATAAAGGAGAAAATCTGC+AGG | - | chr3.1:75044267-75044286 | None:intergenic | 30.0% | |
| TTCATTACAAAGACCAAAAG+AGG | + | chr3.1:75042703-75042722 | MS.gene049413:CDS | 30.0% | |
| TTTCCAATAATTTCCACTTC+AGG | - | chr3.1:75042917-75042936 | None:intergenic | 30.0% | |
| ! | AAACAGATTCTGATTTTCAG+AGG | + | chr3.1:75044115-75044134 | MS.gene049413:CDS | 30.0% |
| ! | CTCAAGTTTTCATTGAAGAA+TGG | + | chr3.1:75044330-75044349 | MS.gene049413:CDS | 30.0% |
| ! | GAACAAATTAAGTCCTCTTT+TGG | - | chr3.1:75042719-75042738 | None:intergenic | 30.0% |
| ! | TTTGTTGTGTAAGAGAAAGA+AGG | - | chr3.1:75044554-75044573 | None:intergenic | 30.0% |
| !! | GAGTGTTATTTAGATGGAAA+TGG | + | chr3.1:75042509-75042528 | MS.gene049413:CDS | 30.0% |
| !! | TAATATGAAATGGGTTTTGC+AGG | - | chr3.1:75044483-75044502 | None:intergenic | 30.0% |
| !! | TCAAGAGAGTGTTATTTAGA+TGG | + | chr3.1:75042503-75042522 | MS.gene049413:CDS | 30.0% |
| !!! | ATGACATGGTTTTTTTCATG+TGG | - | chr3.1:75043469-75043488 | None:intergenic | 30.0% |
| !!! | TCATCAGTTTCATTTTTTCC+TGG | - | chr3.1:75043690-75043709 | None:intergenic | 30.0% |
| !!! | TTATGAAGAGTACCTTTTTG+TGG | - | chr3.1:75044765-75044784 | None:intergenic | 30.0% |
| AAATGCAAGCAATGAGATTG+TGG | + | chr3.1:75043225-75043244 | MS.gene049413:CDS | 35.0% | |
| ACAAGAAGCTCATATATCAC+AGG | + | chr3.1:75043334-75043353 | MS.gene049413:CDS | 35.0% | |
| ACACCAAGTAAAGTGATAAG+AGG | + | chr3.1:75044801-75044820 | MS.gene049413:CDS | 35.0% | |
| ACAGAATACATGACATTGGT+TGG | - | chr3.1:75042073-75042092 | None:intergenic | 35.0% | |
| ACCAAGTAAAGTGATAAGAG+GGG | + | chr3.1:75044803-75044822 | MS.gene049413:CDS | 35.0% | |
| AGGTACTCTTCATAAACTCA+TGG | + | chr3.1:75044770-75044789 | MS.gene049413:CDS | 35.0% | |
| CAACAAATTCATCCCTTGAA+TGG | + | chr3.1:75044567-75044586 | MS.gene049413:CDS | 35.0% | |
| CACCAAGTAAAGTGATAAGA+GGG | + | chr3.1:75044802-75044821 | MS.gene049413:CDS | 35.0% | |
| CCAGAATTAAAATCCTCTAG+TGG | - | chr3.1:75042980-75042999 | None:intergenic | 35.0% | |
| CCTATAGTATTCGATGAGAA+AGG | - | chr3.1:75044369-75044388 | None:intergenic | 35.0% | |
| CCTTTCTCATCGAATACTAT+AGG | + | chr3.1:75044366-75044385 | MS.gene049413:CDS | 35.0% | |
| CTTAAGGGACAAACATAACT+TGG | + | chr3.1:75044164-75044183 | MS.gene049413:CDS | 35.0% | |
| CTTGATCACTCTAGATGTAT+CGG | + | chr3.1:75043868-75043887 | MS.gene049413:CDS | 35.0% | |
| GAAATGTGGTAAATGTTCAG+AGG | + | chr3.1:75044305-75044324 | MS.gene049413:CDS | 35.0% | |
| GCATATTGATAGAAAACGTC+AGG | + | chr3.1:75042436-75042455 | MS.gene049413:CDS | 35.0% | |
| GGAGTAGAAGACTTGAATAA+TGG | + | chr3.1:75042947-75042966 | MS.gene049413:CDS | 35.0% | |
| GGTAACAAGAATGATCTACA+TGG | - | chr3.1:75043978-75043997 | None:intergenic | 35.0% | |
| GGTACTCTTCATAAACTCAT+GGG | + | chr3.1:75044771-75044790 | MS.gene049413:CDS | 35.0% | |
| GTAAATGTTGTTGGACAACA+TGG | - | chr3.1:75042178-75042197 | None:intergenic | 35.0% | |
| GTAAGGTGGTTACCAAAATT+CGG | + | chr3.1:75041772-75041791 | MS.gene049413:CDS | 35.0% | |
| GTTTCAGTGATTTCCATTTC+AGG | - | chr3.1:75042791-75042810 | None:intergenic | 35.0% | |
| TACCTAAATTGTCACTCAGA+AGG | + | chr3.1:75042603-75042622 | MS.gene049413:CDS | 35.0% | |
| TAGTTGACATGAGATACTGA+TGG | - | chr3.1:75044447-75044466 | None:intergenic | 35.0% | |
| TCACAGTGAGTGATGTTATT+TGG | - | chr3.1:75042653-75042672 | None:intergenic | 35.0% | |
| TGTATCGGAAGATGTAATCA+TGG | + | chr3.1:75043883-75043902 | MS.gene049413:CDS | 35.0% | |
| TGTGATATATGAGCTTCTTG+TGG | - | chr3.1:75043335-75043354 | None:intergenic | 35.0% | |
| TGTGGTGAGGAAATACTTAA+GGG | + | chr3.1:75044149-75044168 | MS.gene049413:CDS | 35.0% | |
| TTGTACACAGAATATCCTTG+AGG | - | chr3.1:75041837-75041856 | None:intergenic | 35.0% | |
| ! | ATAGCTGATTGGTCATTGTT+AGG | - | chr3.1:75043151-75043170 | None:intergenic | 35.0% |
| ! | ATGACAAATCAGCTCTGATA+GGG | + | chr3.1:75042759-75042778 | MS.gene049413:CDS | 35.0% |
| ! | TATGACAAATCAGCTCTGAT+AGG | + | chr3.1:75042758-75042777 | MS.gene049413:CDS | 35.0% |
| ! | TGGAGCTGATTTATCACTAT+TGG | - | chr3.1:75043017-75043036 | None:intergenic | 35.0% |
| ! | TGTAACTGGCTTCTCTTTAT+TGG | - | chr3.1:75042882-75042901 | None:intergenic | 35.0% |
| !! | ATTCTGATTTTCAGAGGCAT+AGG | + | chr3.1:75044121-75044140 | MS.gene049413:CDS | 35.0% |
| !! | TGCATTGATTTCTTGCATAC+TGG | - | chr3.1:75042375-75042394 | None:intergenic | 35.0% |
| !! | TTCTGATTTTCAGAGGCATA+GGG | + | chr3.1:75044122-75044141 | MS.gene049413:CDS | 35.0% |
| !!! | CCACTAGAGGATTTTAATTC+TGG | + | chr3.1:75042977-75042996 | MS.gene049413:CDS | 35.0% |
| AAAGAGAAGCCAGTTACAGA+AGG | + | chr3.1:75042884-75042903 | MS.gene049413:CDS | 40.0% | |
| AACCTTGAAGGGGAAATTAC+TGG | + | chr3.1:75043046-75043065 | MS.gene049413:CDS | 40.0% | |
| AATGGAAAATGGCCACAAGA+GGG | + | chr3.1:75043097-75043116 | MS.gene049413:CDS | 40.0% | |
| ACAAATGGAAGAGTTTCTGC+TGG | + | chr3.1:75043766-75043785 | MS.gene049413:CDS | 40.0% | |
| ACGGATACAGATGAATCAAC+TGG | + | chr3.1:75044681-75044700 | MS.gene049413:CDS | 40.0% | |
| AGAAGAACTGGAAAGTGAGT+TGG | + | chr3.1:75042577-75042596 | MS.gene049413:CDS | 40.0% | |
| AGAAGAATCTGCTAAGACAC+GGG | - | chr3.1:75044010-75044029 | None:intergenic | 40.0% | |
| AGAGGATACCAAATCTGAAG+TGG | + | chr3.1:75043171-75043190 | MS.gene049413:CDS | 40.0% | |
| AGTGATAAATCAGCTCCAGT+TGG | + | chr3.1:75043019-75043038 | MS.gene049413:CDS | 40.0% | |
| ATATGAGCTTCTTGTGGTTG+AGG | - | chr3.1:75043329-75043348 | None:intergenic | 40.0% | |
| ATCAAATGGAGTGCATGATG+AGG | + | chr3.1:75043624-75043643 | MS.gene049413:CDS | 40.0% | |
| CAAATTCATCCCTTGAATGG+TGG | + | chr3.1:75044570-75044589 | MS.gene049413:CDS | 40.0% | |
| CAATGACCAATCAGCTATAG+AGG | + | chr3.1:75043153-75043172 | MS.gene049413:CDS | 40.0% | |
| CACAACATGGTAATTCACGT+TGG | + | chr3.1:75043530-75043549 | MS.gene049413:CDS | 40.0% | |
| CAGGAAATTGTCAGCAGAAA+AGG | + | chr3.1:75044728-75044747 | MS.gene049413:CDS | 40.0% | |
| CAGTGATTCAGAACAGAAAG+AGG | - | chr3.1:75042289-75042308 | None:intergenic | 40.0% | |
| CTGTGGTGAGGAAATACTTA+AGG | + | chr3.1:75044148-75044167 | MS.gene049413:CDS | 40.0% | |
| CTTTCATAGCCTGATCTGTA+AGG | - | chr3.1:75043595-75043614 | None:intergenic | 40.0% | |
| GAAATTGTCAGCAGAAAAGG+AGG | + | chr3.1:75044731-75044750 | MS.gene049413:CDS | 40.0% | |
| GAGAAGAATCTGCTAAGACA+CGG | - | chr3.1:75044011-75044030 | None:intergenic | 40.0% | |
| GATGGAAATGGTGAGTACAA+TGG | + | chr3.1:75042521-75042540 | MS.gene049413:CDS | 40.0% | |
| GGAATGACCAGAAAAGGTAA+AGG | + | chr3.1:75043388-75043407 | MS.gene049413:CDS | 40.0% | |
| GGATATTCTGTGTACAAGTG+TGG | + | chr3.1:75041840-75041859 | MS.gene049413:CDS | 40.0% | |
| GTATGTCACAAGCTGAAATG+TGG | + | chr3.1:75044291-75044310 | MS.gene049413:CDS | 40.0% | |
| GTGTTGGACAATACACAACA+TGG | + | chr3.1:75043517-75043536 | MS.gene049413:CDS | 40.0% | |
| GTTATTTGGACCACCTTTGT+TGG | - | chr3.1:75042639-75042658 | None:intergenic | 40.0% | |
| TAATGGAAAATGGCCACAAG+AGG | + | chr3.1:75043096-75043115 | MS.gene049413:CDS | 40.0% | |
| TAATGGCAATTTGCCACTAG+AGG | + | chr3.1:75042964-75042983 | MS.gene049413:CDS | 40.0% | |
| TACAGATCAGGCTATGAAAG+TGG | + | chr3.1:75043595-75043614 | MS.gene049413:CDS | 40.0% | |
| TATTCTGTGTACAAGTGTGG+TGG | + | chr3.1:75041843-75041862 | MS.gene049413:CDS | 40.0% | |
| TCAAATGGAGTGCATGATGA+GGG | + | chr3.1:75043625-75043644 | MS.gene049413:CDS | 40.0% | |
| TCATCATGCACTCCATTTGA+TGG | - | chr3.1:75043625-75043644 | None:intergenic | 40.0% | |
| TCATGTTGGAAATGAACACG+TGG | - | chr3.1:75044033-75044052 | None:intergenic | 40.0% | |
| TCCTCGGAAAGATAGTTTGA+AGG | + | chr3.1:75042463-75042482 | MS.gene049413:CDS | 40.0% | |
| TCTGCTGGTGTATCTTACAA+GGG | + | chr3.1:75043781-75043800 | MS.gene049413:CDS | 40.0% | |
| TCTTCGTCTGTGAACTTGAA+TGG | - | chr3.1:75042560-75042579 | None:intergenic | 40.0% | |
| TGCCTTCTGAGTGACAATTT+AGG | - | chr3.1:75042608-75042627 | None:intergenic | 40.0% | |
| TGGTATCCTCTATAGCTGAT+TGG | - | chr3.1:75043162-75043181 | None:intergenic | 40.0% | |
| TGTTGTGTCCACTTCAGATT+TGG | - | chr3.1:75043182-75043201 | None:intergenic | 40.0% | |
| TTCCAGTAATTTCCCCTTCA+AGG | - | chr3.1:75043051-75043070 | None:intergenic | 40.0% | |
| TTCTGCTGGTGTATCTTACA+AGG | + | chr3.1:75043780-75043799 | MS.gene049413:CDS | 40.0% | |
| TTGAGCTAGGAGAGACATTT+GGG | - | chr3.1:75044608-75044627 | None:intergenic | 40.0% | |
| TTGCTAATAGCTCCTCGTAT+GGG | + | chr3.1:75043413-75043432 | MS.gene049413:CDS | 40.0% | |
| TTTCCTGGTTTCAGACATAC+TGG | - | chr3.1:75044715-75044734 | None:intergenic | 40.0% | |
| TTTGCCTTGAATGTTGAGCT+AGG | - | chr3.1:75044621-75044640 | None:intergenic | 40.0% | |
| TTTGGAAACTTGTCGCTAGA+GGG | + | chr3.1:75042815-75042834 | MS.gene049413:CDS | 40.0% | |
| ! | CTTGTTGCTTCAGCTGAATA+AGG | - | chr3.1:75043946-75043965 | None:intergenic | 40.0% |
| ! | CTTTTCTGCTGACAATTTCC+TGG | - | chr3.1:75044730-75044749 | None:intergenic | 40.0% |
| ! | GAAGAGCAACAATTTTGCAC+TGG | - | chr3.1:75044075-75044094 | None:intergenic | 40.0% |
| ! | GCAACAATTTTGCACTGGAT+AGG | - | chr3.1:75044070-75044089 | None:intergenic | 40.0% |
| ! | GTTGATTCATCTGTATCCGT+TGG | - | chr3.1:75044681-75044700 | None:intergenic | 40.0% |
| ! | TGACAAATCAGCTCTGATAG+GGG | + | chr3.1:75042760-75042779 | MS.gene049413:CDS | 40.0% |
| !! | GGTATTGGTATGCAGAACTA+CGG | - | chr3.1:75043810-75043829 | None:intergenic | 40.0% |
| !! | TCTGTTTCACTGAAGCATTG+TGG | - | chr3.1:75044102-75044121 | None:intergenic | 40.0% |
| !! | TTTTGGAAACTTGTCGCTAG+AGG | + | chr3.1:75042814-75042833 | MS.gene049413:CDS | 40.0% |
| !!! | GAGAATGGTTTTGAAGTTGC+AGG | + | chr3.1:75043708-75043727 | MS.gene049413:CDS | 40.0% |
| !!! | TGAAGAGTACCTTTTTGTGG+AGG | - | chr3.1:75044762-75044781 | None:intergenic | 40.0% |
| AATGCTTACACCGTTGCTGA+AGG | + | chr3.1:75043367-75043386 | MS.gene049413:CDS | 45.0% | |
| ACAGAATATCCTTGAGGCTC+TGG | - | chr3.1:75041831-75041850 | None:intergenic | 45.0% | |
| CAAGAAATCAATGCAGCTCC+TGG | + | chr3.1:75042380-75042399 | MS.gene049413:CDS | 45.0% | |
| CAAGACTCGCTATATGAGTG+AGG | + | chr3.1:75043741-75043760 | MS.gene049413:CDS | 45.0% | |
| CATACGAGGAGCTATTAGCA+AGG | - | chr3.1:75043414-75043433 | None:intergenic | 45.0% | |
| CATAGCCATGACCTTCATGA+GGG | + | chr3.1:75043829-75043848 | MS.gene049413:CDS | 45.0% | |
| CATCACTCACTGTGAGATTG+AGG | + | chr3.1:75042658-75042677 | MS.gene049413:CDS | 45.0% | |
| CTAAGACACGGGAACAACAA+TGG | - | chr3.1:75043999-75044018 | None:intergenic | 45.0% | |
| CTCTCCTAGCTCAACATTCA+AGG | + | chr3.1:75044614-75044633 | MS.gene049413:CDS | 45.0% | |
| CTGCTGGTGTATCTTACAAG+GGG | + | chr3.1:75043782-75043801 | MS.gene049413:CDS | 45.0% | |
| CTGTGCTGTCTTTCATGACA+TGG | - | chr3.1:75043483-75043502 | None:intergenic | 45.0% | |
| CTTGCTAATAGCTCCTCGTA+TGG | + | chr3.1:75043412-75043431 | MS.gene049413:CDS | 45.0% | |
| GAAAACGTCAGGTTCTTCCT+CGG | + | chr3.1:75042447-75042466 | MS.gene049413:CDS | 45.0% | |
| GAAGGTCATGGCTATGGTAT+TGG | - | chr3.1:75043825-75043844 | None:intergenic | 45.0% | |
| GAGAAAACCTTCCCTCATGA+AGG | - | chr3.1:75043843-75043862 | None:intergenic | 45.0% | |
| GAGGTAAAGCCTCCACAAAA+AGG | + | chr3.1:75044750-75044769 | MS.gene049413:CDS | 45.0% | |
| GCCCCTCTTATCACTTTACT+TGG | - | chr3.1:75044807-75044826 | None:intergenic | 45.0% | |
| GCCTTCAAACTATCTTTCCG+AGG | - | chr3.1:75042467-75042486 | None:intergenic | 45.0% | |
| GCTGAAGGAATGACCAGAAA+AGG | + | chr3.1:75043382-75043401 | MS.gene049413:CDS | 45.0% | |
| GGAAATGGTGAGTACAATGG+CGG | + | chr3.1:75042524-75042543 | MS.gene049413:CDS | 45.0% | |
| GGATTTGCACCTTCTGTAAC+TGG | - | chr3.1:75042896-75042915 | None:intergenic | 45.0% | |
| GTTCACAGACGAAGAAGAAC+TGG | + | chr3.1:75042565-75042584 | MS.gene049413:CDS | 45.0% | |
| GTTGAGCTAGGAGAGACATT+TGG | - | chr3.1:75044609-75044628 | None:intergenic | 45.0% | |
| TCGAGAATGCCTTACAGATC+AGG | + | chr3.1:75043583-75043602 | MS.gene049413:CDS | 45.0% | |
| TCTGGTCATTCCTTCAGCAA+CGG | - | chr3.1:75043380-75043399 | None:intergenic | 45.0% | |
| TGCTAATAGCTCCTCGTATG+GGG | + | chr3.1:75043414-75043433 | MS.gene049413:CDS | 45.0% | |
| ! | ACAAGATCCGATGCTTTTCC+AGG | - | chr3.1:75042401-75042420 | None:intergenic | 45.0% |
| ! | AGAAGGTGCAAATCCTGAAG+TGG | + | chr3.1:75042901-75042920 | MS.gene049413:CDS | 45.0% |
| ! | AGCAAGGCCTTTACCTTTTC+TGG | - | chr3.1:75043398-75043417 | None:intergenic | 45.0% |
| ! | AGGCATAGAGTGTCCAACAA+AGG | + | chr3.1:75042623-75042642 | MS.gene049413:CDS | 45.0% |
| ! | AGTTGGTACGAACCTTGAAG+GGG | + | chr3.1:75043036-75043055 | MS.gene049413:CDS | 45.0% |
| ! | CAGTTGGTACGAACCTTGAA+GGG | + | chr3.1:75043035-75043054 | MS.gene049413:CDS | 45.0% |
| ! | CATAGAGTGTCCAACAAAGG+TGG | + | chr3.1:75042626-75042645 | MS.gene049413:CDS | 45.0% |
| ! | GATCTGTAAGGCATTCTCGA+TGG | - | chr3.1:75043583-75043602 | None:intergenic | 45.0% |
| ! | TCTGAAGTGGACACAACAGA+AGG | + | chr3.1:75043184-75043203 | MS.gene049413:CDS | 45.0% |
| ! | TGGGTTTTGCAGGTGAATAC+TGG | - | chr3.1:75044473-75044492 | None:intergenic | 45.0% |
| !!! | GCATCGGATCTTGTTTTTGC+AGG | + | chr3.1:75042407-75042426 | MS.gene049413:CDS | 45.0% |
| AAATGGCCACAAGAGGGAGA+AGG | + | chr3.1:75043103-75043122 | MS.gene049413:CDS | 50.0% | |
| AATCTGCAGGTAGCTGAAGC+AGG | - | chr3.1:75044254-75044273 | None:intergenic | 50.0% | |
| ACCTTCCCTCATGAAGGTCA+TGG | - | chr3.1:75043837-75043856 | None:intergenic | 50.0% | |
| CAACTTCTTCCAGAGCCTCA+AGG | + | chr3.1:75041819-75041838 | MS.gene049413:CDS | 50.0% | |
| CACTAACCACCTCGCTTCTA+CGG | - | chr3.1:75044413-75044432 | None:intergenic | 50.0% | |
| CCATAGCCATGACCTTCATG+AGG | + | chr3.1:75043828-75043847 | MS.gene049413:CDS | 50.0% | |
| CCTCATGAAGGTCATGGCTA+TGG | - | chr3.1:75043831-75043850 | None:intergenic | 50.0% | |
| CCTGGTTTCAGACATACTGG+AGG | - | chr3.1:75044712-75044731 | None:intergenic | 50.0% | |
| CCTTCAAGGTTCGTACCAAC+TGG | - | chr3.1:75043037-75043056 | None:intergenic | 50.0% | |
| CGAGTACTTATGCCTTTGGC+GGG | - | chr3.1:75043917-75043936 | None:intergenic | 50.0% | |
| GAAAGTGGCAGGCCATCAAA+TGG | + | chr3.1:75043610-75043629 | MS.gene049413:CDS | 50.0% | |
| GATAGGGGACAGACCTGAAA+TGG | + | chr3.1:75042775-75042794 | MS.gene049413:CDS | 50.0% | |
| GATCAGGCTATGAAAGTGGC+AGG | + | chr3.1:75043599-75043618 | MS.gene049413:CDS | 50.0% | |
| GCGAGTACTTATGCCTTTGG+CGG | - | chr3.1:75043918-75043937 | None:intergenic | 50.0% | |
| GGAAGAAGTTGCCGGCATTT+AGG | - | chr3.1:75041810-75041829 | None:intergenic | 50.0% | |
| TAAGCGACATCACAAGCCAG+TGG | + | chr3.1:75044188-75044207 | MS.gene049413:CDS | 50.0% | |
| TAATGCAATCGCGGCTCCAA+CGG | + | chr3.1:75044662-75044681 | MS.gene049413:CDS | 50.0% | |
| TCCGCGAGTACTTATGCCTT+TGG | - | chr3.1:75043921-75043940 | None:intergenic | 50.0% | |
| TGTTCCAAGATCCCCATACG+AGG | - | chr3.1:75043428-75043447 | None:intergenic | 50.0% | |
| ! | CCAGTTGGTACGAACCTTGA+AGG | + | chr3.1:75043034-75043053 | MS.gene049413:CDS | 50.0% |
| ! | CCTCCAGTATGTCTGAAACC+AGG | + | chr3.1:75044709-75044728 | MS.gene049413:CDS | 50.0% |
| ! | GCCAAAGGCATAAGTACTCG+CGG | + | chr3.1:75043917-75043936 | MS.gene049413:CDS | 50.0% |
| ! | TGCAGCTCCTGGAAAAGCAT+CGG | + | chr3.1:75042391-75042410 | MS.gene049413:CDS | 50.0% |
| !! | GCAGATGCGGTGTTGATTTC+TGG | + | chr3.1:75042839-75042858 | MS.gene049413:CDS | 50.0% |
| !! | GTGTACAAGTGTGGTGGATG+TGG | + | chr3.1:75041849-75041868 | MS.gene049413:CDS | 50.0% |
| AGCTCCTCGTATGGGGATCT+TGG | + | chr3.1:75043421-75043440 | MS.gene049413:CDS | 55.0% | |
| ATGGAATTGCGTCCCGCCAA+AGG | + | chr3.1:75043902-75043921 | MS.gene049413:CDS | 55.0% | |
| CGTAGAAGCGAGGTGGTTAG+TGG | + | chr3.1:75044411-75044430 | MS.gene049413:CDS | 55.0% | |
| CTACGGTGAAGCTCACGAGA+TGG | - | chr3.1:75044396-75044415 | None:intergenic | 55.0% | |
| GCCATGACCTTCATGAGGGA+AGG | + | chr3.1:75043833-75043852 | MS.gene049413:CDS | 55.0% | |
| TCCTCTCCTTCTCCCTCTTG+TGG | - | chr3.1:75043112-75043131 | None:intergenic | 55.0% | |
| TCTTTCACACGACTCGCGTG+AGG | + | chr3.1:75043657-75043676 | MS.gene049413:CDS | 55.0% | |
| TGAGCTTCACCGTAGAAGCG+AGG | + | chr3.1:75044401-75044420 | MS.gene049413:CDS | 55.0% | |
| ! | TCAGAGGCATAGGGCTACTG+TGG | + | chr3.1:75044131-75044150 | MS.gene049413:CDS | 55.0% |
| !! | GAGGCTCTGGAAGAAGTTGC+CGG | - | chr3.1:75041818-75041837 | None:intergenic | 55.0% |
| !! | GGATGTGGCACTGACCTTCA+AGG | + | chr3.1:75041864-75041883 | MS.gene049413:CDS | 55.0% |
| AAAGGAGCTCCACCTGCCAC+TGG | - | chr3.1:75044207-75044226 | None:intergenic | 60.0% | |
| CATCACAAGCCAGTGGCAGG+TGG | + | chr3.1:75044195-75044214 | MS.gene049413:CDS | 60.0% | |
| CGACATCACAAGCCAGTGGC+AGG | + | chr3.1:75044192-75044211 | MS.gene049413:CDS | 60.0% | |
| GCCACAAGAGGGAGAAGGAG+AGG | + | chr3.1:75043108-75043127 | MS.gene049413:CDS | 60.0% | |
| GCTTCACCGTAGAAGCGAGG+TGG | + | chr3.1:75044404-75044423 | MS.gene049413:CDS | 60.0% | |
| GGCATAGGGCTACTGTGGTG+AGG | + | chr3.1:75044136-75044155 | MS.gene049413:CDS | 60.0% | |
| GTCGCTAGAGGGAGCAGATG+CGG | + | chr3.1:75042826-75042845 | MS.gene049413:CDS | 60.0% | |
| CTCGCGTGAGGACACTGACC+AGG | + | chr3.1:75043669-75043688 | MS.gene049413:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 75041765 | 75044836 | 75041765 | ID=MS.gene049413 |
| chr3.1 | mRNA | 75041765 | 75044836 | 75041765 | ID=MS.gene049413.t1;Parent=MS.gene049413 |
| chr3.1 | exon | 75041765 | 75041885 | 75041765 | ID=MS.gene049413.t1.exon1;Parent=MS.gene049413.t1 |
| chr3.1 | CDS | 75041765 | 75041885 | 75041765 | ID=cds.MS.gene049413.t1;Parent=MS.gene049413.t1 |
| chr3.1 | exon | 75042339 | 75044836 | 75042339 | ID=MS.gene049413.t1.exon2;Parent=MS.gene049413.t1 |
| chr3.1 | CDS | 75042339 | 75044836 | 75042339 | ID=cds.MS.gene049413.t1;Parent=MS.gene049413.t1 |
| Gene Sequence |
| Protein sequence |
