AlfalfaGEDB | MS.gene45414

M. sativa cultivar XinJiangDaYe / MS.gene45414

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45414.t1	XP_013468203.1	76.4	364	33	1	2	312	222	585	1.90E-137	498.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45414.t1	Q9S7D9	44.8	308	106	5	61	312	294	593	4.6e-55	216.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45414.t1	A0A072VVX2	76.4	364	33	1	2	312	222	585	1.4e-137	498.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049807	MS.gene45414	0.834904	2.29E-56	-1.69E-46
MS.gene050646	MS.gene45414	0.807605	4.66E-50	-1.69E-46
MS.gene051852	MS.gene45414	0.81511	1.09E-51	-1.69E-46
MS.gene052307	MS.gene45414	0.84026	9.68E-58	-1.69E-46
MS.gene052609	MS.gene45414	0.808191	3.50E-50	-1.69E-46
MS.gene053143	MS.gene45414	0.809555	1.79E-50	-1.69E-46
MS.gene061100	MS.gene45414	0.801067	1.07E-48	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45414.t1	MTR_1g064560	81.868	364	13	1	2	312	222	585	0.0	594
MS.gene45414.t1	MTR_5g082630	28.142	366	202	11	2	312	212	571	4.77e-26	109
MS.gene45414.t1	MTR_4g067230	29.648	398	175	15	2	312	211	590	5.27e-23	100
MS.gene45414.t1	MTR_3g464080	27.479	353	185	11	20	312	229	570	4.18e-18	85.9
MS.gene45414.t1	MTR_2g012670	38.710	93	57	0	225	317	421	513	3.12e-17	83.2
MS.gene45414.t1	MTR_8g106100	33.742	163	96	4	159	312	491	650	3.67e-17	83.2
MS.gene45414.t1	MTR_4g046113	38.614	101	62	0	217	317	531	631	3.89e-17	82.8
MS.gene45414.t1	MTR_4g046113	38.614	101	62	0	217	317	531	631	4.15e-17	82.8
MS.gene45414.t1	MTR_4g046113	38.614	101	62	0	217	317	410	510	5.72e-17	82.4
MS.gene45414.t1	MTR_8g442270	31.765	170	100	6	147	312	393	550	7.95e-17	82.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45414.t1	AT3G09780	51.892	370	111	6	2	312	232	593	1.43e-114	349
MS.gene45414.t1	AT2G39180	46.579	380	129	10	2	312	218	592	2.18e-85	273
MS.gene45414.t1	AT5G47850	28.280	343	199	13	2	312	199	526	2.20e-20	92.8
MS.gene45414.t1	AT3G59420	47.727	88	46	0	225	312	498	585	1.73e-18	87.0
MS.gene45414.t1	AT5G54380	36.310	168	90	5	154	312	422	581	9.30e-18	84.7
MS.gene45414.t1	AT2G01820	32.692	156	88	3	174	312	503	658	5.74e-17	82.4
MS.gene45414.t1	AT1G79620	42.308	104	53	2	214	312	608	709	1.20e-16	81.3
MS.gene45414.t1	AT1G79620	42.308	104	53	2	214	312	608	709	1.55e-16	81.3
MS.gene45414.t1	AT1G79620	42.308	104	53	2	214	312	608	709	1.58e-16	81.3
MS.gene45414.t1	AT1G79620	42.308	104	53	2	214	312	634	735	1.84e-16	80.9

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Find 75 sgRNAs with CRISPR-Local

Find 99 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAATCCAAGTCTTGTAT+TGG	0.464155	1.1:+48844981	MS.gene45414:CDS
AAGCTGCTTTGGCTGATGGG+AGG	0.652952	1.1:+48845189	MS.gene45414:CDS
AATTCATCTTTGGTTCCTAA+AGG	0.440583	1.1:+48844442	MS.gene45414:CDS
ACAAAGCTGCTTTGGCTGAT+GGG	0.473300	1.1:+48845186	MS.gene45414:CDS
ACACTTTCTGATCACATTCA+CGG	0.536758	1.1:+48845385	MS.gene45414:CDS
ACCCCAACATCTCAAATCAC+CGG	0.574872	1.1:-48844305	None:intergenic
AGAACCTCCGTTGAAAACGG+AGG	0.724484	1.1:+48844333	MS.gene45414:CDS
AGACGCTACTAACGGTTTCA+AGG	0.461020	1.1:+48845124	MS.gene45414:CDS
AGCCTTAAGCTCCAATTGAG+AGG	0.588300	1.1:-48845418	None:intergenic
AGCTTGGGAGAGGAAGTTAT+GGG	0.427505	1.1:+48845156	MS.gene45414:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACACATAAACTTGTCAAATC+TGG	-	chr1.1:48844667-48844686	None:intergenic	30.0%
ATGTTTACCAATACAAGACT+TGG	-	chr1.1:48844991-48845010	None:intergenic	30.0%
GGGTAATTTGAATTCATCTT+TGG	+	chr1.1:48844432-48844451	MS.gene45414:CDS	30.0%
GTTTATGAGTATATGTCTCA+TGG	+	chr1.1:48845361-48845380	MS.gene45414:CDS	30.0%
TATGTGTTAGACAAGATTTG+AGG	+	chr1.1:48844680-48844699	MS.gene45414:intron	30.0%
TCTTCTGATTATACTACTTG+TGG	+	chr1.1:48844487-48844506	MS.gene45414:CDS	30.0%
ACACTTTCTGATCACATTCA+CGG	+	chr1.1:48845385-48845404	MS.gene45414:CDS	35.0%
ATAGTCATGAGGTTGAATGT+TGG	+	chr1.1:48844410-48844429	MS.gene45414:CDS	35.0%
ATGGGTTCAAGGAAAAAACA+TGG	+	chr1.1:48844951-48844970	MS.gene45414:CDS	35.0%
ATTGGCATCATATTCGTAGA+TGG	+	chr1.1:48844856-48844875	MS.gene45414:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	48844268	48845436	48844268	ID=MS.gene45414
chr1.1	mRNA	48844268	48845436	48844268	ID=MS.gene45414.t1;Parent=MS.gene45414
chr1.1	exon	48844268	48844645	48844268	ID=MS.gene45414.t1.exon1;Parent=MS.gene45414.t1
chr1.1	CDS	48844268	48844645	48844268	ID=cds.MS.gene45414.t1;Parent=MS.gene45414.t1
chr1.1	exon	48844804	48845436	48844804	ID=MS.gene45414.t1.exon2;Parent=MS.gene45414.t1
chr1.1	CDS	48844804	48845436	48844804	ID=cds.MS.gene45414.t1;Parent=MS.gene45414.t1

Gene Sequence

>MS.gene45414

CAGGGAGGGACCGCGGTATGCGGTGTTTTGAATGTTTCCGGTGATTTGAGATGTTGGGGTGACATAGAACCTCCGTTGAAAACGGAGGTTCGTTTTGTTTCACTATCTGGTGGGGCGCGTCATTTTTGCGGTGTTGGAGAGGATAGTCATGAGGTTGAATGTTGGGGTAATTTGAATTCATCTTTGGTTCCTAAAGGTATTGGCTTTATGGCAATTGCTTCTTCTGATTATACTACTTGTGGTATAAGGGAAGATGATCTTCTTTTAGATTGTTGGTTGGTCAACGCTTCAAAGCCAGATTTTGACCCACCTTTAGAGCTTTCAAGTCCTGGTCTTTGTAGGTCAAGTTCTTGTGAAGCTAATGAATTTGATTTCAATGTTAGTGTTCTTAATCAACCAGATTTGACAAGTTTATGTGTTAGACAAGATTTGAGGATTTGTTCACCTTGTGGGTACAATTGTTCACAAGGTTTCTTTTTGTCTAGTCCTTGTACTCAAATTTTGATAGAGTTTGCACACCTTGTTCTCTTTGTCAGAACAGTTCTTGTCTGAGTGTTTGTAAACTTCATTCTTCAAATGGGTTTTGGCATTGGCATCATATTCGTAGATGGGTTCTCATAGTTGGATCTTCTGTTTTGTGTTTGTTGTTGATTTTGACTTGTGGGTGCATTCTTCGATGTTCGATGGGTTCAAGGAAAAAACATGGCACAAAGAAACAATCCAAGTCTTGTATTGGTAAACATGAACAAGAGAATGATGATGAGGTCAATGGTAATGGTAATGGCCTTCTTCACTCGGCTTCTTCGGCTGCGTCTTGTCCAGGTTTGCCTCAGGTTTTCAGGCTTTCGGAGTTGAAAGACGCTACTAACGGTTTCAAGGAGTTTAATGAGCTTGGGAGAGGAAGTTATGGGTTTGTTTACAAAGCTGCTTTGGCTGATGGGAGGACTGTTGCTGTCAAGAGAGCGAACGCTGCGACTATAATTCACACCAACAATCGCGACTTTGAAATGGAGTTGGAAATTTTGTGCAAAATTCGGCATGTTAATATTGTTAACTTGTTGGGTTATTGTGCTGAGATGGGTGAGAGGTTGCTGTTTATGAGTATATGTCTCATGGAACACTTTCTGATCACATTCACGGTGGTCTTTCTCCTCTCAATTGGAGCTTAA

Protein sequence

>MS.gene45414.t1

QGGTAVCGVLNVSGDLRCWGDIEPPLKTEVRFVSLSGGARHFCGVGEDSHEVECWGNLNSSLVPKGIGFMAIASSDYTTCGIREDDLLLDCWLVNASKPDFDPPLELSSPGLCRSSSCEANEFDFNNSSCLSVCKLHSSNGFWHWHHIRRWVLIVGSSVLCLLLILTCGCILRCSMGSRKKHGTKKQSKSCIGKHEQENDDEVNGNGNGLLHSASSAASCPGLPQVFRLSELKDATNGFKEFNELGRGSYGFVYKAALADGRTVAVKRANAATIIHTNNRDFEMELEILCKIRHVNIVNLLGYCAEMGERLLFMSICLMEHFLITFTVVFLLSIGA