Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45418.t1 | XP_013468199.1 | 94.6 | 129 | 7 | 0 | 1 | 129 | 1 | 129 | 2.60E-58 | 234.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45418.t1 | I3S5D8 | 94.6 | 129 | 7 | 0 | 1 | 129 | 1 | 129 | 1.9e-58 | 234.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049824 | MS.gene45418 | 0.806303 | 8.78E-50 | -1.69E-46 |
| MS.gene049825 | MS.gene45418 | 0.81193 | 5.47E-51 | -1.69E-46 |
| MS.gene052376 | MS.gene45418 | 0.803722 | 3.04E-49 | -1.69E-46 |
| MS.gene052613 | MS.gene45418 | 0.822567 | 2.21E-53 | -1.69E-46 |
| MS.gene052665 | MS.gene45418 | 0.801631 | 8.22E-49 | -1.69E-46 |
| MS.gene053221 | MS.gene45418 | 0.802558 | 5.30E-49 | -1.69E-46 |
| MS.gene057060 | MS.gene45418 | 0.804692 | 1.91E-49 | -1.69E-46 |
| MS.gene058084 | MS.gene45418 | 0.803063 | 4.17E-49 | -1.69E-46 |
| MS.gene059317 | MS.gene45418 | 0.806374 | 8.48E-50 | -1.69E-46 |
| MS.gene05954 | MS.gene45418 | 0.822873 | 1.88E-53 | -1.69E-46 |
| MS.gene060587 | MS.gene45418 | 0.805913 | 1.06E-49 | -1.69E-46 |
| MS.gene060619 | MS.gene45418 | 0.801279 | 9.70E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45418.t1 | MTR_1g064490 | 94.574 | 129 | 7 | 0 | 1 | 129 | 1 | 129 | 7.87e-87 | 249 |
| MS.gene45418.t1 | MTR_1g064490 | 92.500 | 80 | 6 | 0 | 1 | 80 | 1 | 80 | 8.54e-50 | 154 |
| MS.gene45418.t1 | MTR_1g064490 | 82.500 | 80 | 6 | 1 | 1 | 80 | 1 | 72 | 1.56e-40 | 130 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45418.t1 | AT2G37195 | 52.294 | 109 | 51 | 1 | 21 | 129 | 32 | 139 | 3.70e-34 | 116 |
| MS.gene45418.t1 | AT2G37195 | 52.294 | 109 | 51 | 1 | 21 | 129 | 22 | 129 | 3.72e-34 | 115 |
Find 30 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTGTTTATTTCAGACTTT+GGG | 0.230009 | 1.1:-48746329 | MS.gene45418:CDS |
| TTTGTAGTATTGCAAATTTA+TGG | 0.242937 | 1.1:+48744760 | None:intergenic |
| GTTAATACCAGGAGCATCTT+TGG | 0.296511 | 1.1:+48744782 | None:intergenic |
| ACAGTTTGATATTGCTAATA+GGG | 0.305827 | 1.1:-48745197 | MS.gene45418:CDS |
| GACAGTTTGATATTGCTAAT+AGG | 0.308680 | 1.1:-48745198 | MS.gene45418:CDS |
| AAGATCAACGTTAGTGGGTT+TGG | 0.327165 | 1.1:-48746374 | MS.gene45418:CDS |
| TAGGGTGAATGGGTGCTTAA+AGG | 0.333923 | 1.1:-48745122 | MS.gene45418:CDS |
| TTGCTGTTTATTTCAGACTT+TGG | 0.349606 | 1.1:-48746330 | MS.gene45418:CDS |
| GAAAAGAAGATCAACGTTAG+TGG | 0.411060 | 1.1:-48746380 | MS.gene45418:CDS |
| AAGGAGGTGGATAGGGTGAA+TGG | 0.422556 | 1.1:-48745133 | MS.gene45418:CDS |
| GTATGATAAGGAGGTGGATA+GGG | 0.427663 | 1.1:-48745140 | MS.gene45418:CDS |
| TAAATTTGCAATACTACAAA+AGG | 0.456708 | 1.1:-48744757 | MS.gene45418:intron |
| AGTATGATAAGGAGGTGGAT+AGG | 0.469594 | 1.1:-48745141 | MS.gene45418:CDS |
| GAATGCAATCTTACTTGAAA+GGG | 0.497392 | 1.1:-48744367 | MS.gene45418:CDS |
| GTGGAGGCTAAAGTATGATA+AGG | 0.498733 | 1.1:-48745152 | MS.gene45418:CDS |
| AGAATGCAATCTTACTTGAA+AGG | 0.506970 | 1.1:-48744368 | MS.gene45418:CDS |
| TCGATGATTCTGAGCTCATA+AGG | 0.511176 | 1.1:-48746285 | MS.gene45418:intron |
| AGGAGGTGGATAGGGTGAAT+GGG | 0.514681 | 1.1:-48745132 | MS.gene45418:CDS |
| AAAAGAAGATCAACGTTAGT+GGG | 0.526220 | 1.1:-48746379 | MS.gene45418:CDS |
| TGCAATCTTACTTGAAAGGG+TGG | 0.548429 | 1.1:-48744364 | MS.gene45418:CDS |
| CAGATAGCCAAAGATGCTCC+TGG | 0.550020 | 1.1:-48744789 | MS.gene45418:CDS |
| TATTGCTAATAGGGAGGCAA+TGG | 0.551574 | 1.1:-48745188 | MS.gene45418:CDS |
| GCTAAAGTATGATAAGGAGG+TGG | 0.572359 | 1.1:-48745146 | MS.gene45418:CDS |
| GAGGCTAAAGTATGATAAGG+AGG | 0.580238 | 1.1:-48745149 | MS.gene45418:CDS |
| GCAAATTTATGGTTAATACC+AGG | 0.588657 | 1.1:+48744771 | None:intergenic |
| ATTAAAACGACAGCTTGAAG+AGG | 0.605851 | 1.1:-48744337 | MS.gene45418:CDS |
| GTTTGATATTGCTAATAGGG+AGG | 0.640077 | 1.1:-48745194 | MS.gene45418:CDS |
| GTGCTTAAAGGAACTTCAAG+TGG | 0.655527 | 1.1:-48745110 | MS.gene45418:intron |
| TGGATGAATCTGCTGAGTGG+AGG | 0.660472 | 1.1:-48745168 | MS.gene45418:CDS |
| CAATGGATGAATCTGCTGAG+TGG | 0.681919 | 1.1:-48745171 | MS.gene45418:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTAATTTTTAAAATTT+GGG | + | chr1.1:48746144-48746163 | None:intergenic | 0.0% |
| !!! | TAAATTTAATTTTTAAAATT+TGG | + | chr1.1:48746145-48746164 | None:intergenic | 0.0% |
| !! | AGAAAAACACATAATATTAA+AGG | + | chr1.1:48745152-48745171 | None:intergenic | 15.0% |
| !! | GAAAAACACATAATATTAAA+GGG | + | chr1.1:48745151-48745170 | None:intergenic | 15.0% |
| !!! | ATTTTTTTTTTTTTTTGGAG+AGG | - | chr1.1:48745084-48745103 | MS.gene45418:intron | 15.0% |
| !!! | TTGAATTTAACTAGATTTTT+CGG | + | chr1.1:48744737-48744756 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTTTTTGGAGA+GGG | - | chr1.1:48745085-48745104 | MS.gene45418:intron | 15.0% |
| !! | AACAAGGATAAAATTGTTAA+AGG | - | chr1.1:48746055-48746074 | MS.gene45418:intron | 20.0% |
| !! | TAAATTTGCAATACTACAAA+AGG | - | chr1.1:48745945-48745964 | MS.gene45418:intron | 20.0% |
| !! | TATTTGTACCAAGATAAAAT+TGG | - | chr1.1:48745765-48745784 | MS.gene45418:intron | 20.0% |
| !! | TGAGTATTTATATATCTTGT+TGG | - | chr1.1:48745177-48745196 | MS.gene45418:CDS | 20.0% |
| !! | TTATAATCTATAGTAAACGA+TGG | + | chr1.1:48745448-48745467 | None:intergenic | 20.0% |
| !! | TTTGTAGTATTGCAAATTTA+TGG | + | chr1.1:48745945-48745964 | None:intergenic | 20.0% |
| !!! | AATTATTTTTGGCATTCTTT+TGG | - | chr1.1:48746248-48746267 | MS.gene45418:intron | 20.0% |
| !!! | AATTTTCTTAAATTAGTCAC+TGG | - | chr1.1:48745340-48745359 | MS.gene45418:intron | 20.0% |
| !!! | ACATTTAGAACTTATTTTGA+TGG | - | chr1.1:48745050-48745069 | MS.gene45418:intron | 20.0% |
| !!! | AGTTCTAAATGTAATCAAAA+TGG | + | chr1.1:48745042-48745061 | None:intergenic | 20.0% |
| !!! | ATTTAGAACTTGATTTTGTT+AGG | - | chr1.1:48745013-48745032 | MS.gene45418:intron | 20.0% |
| !!! | ATTTTCTACCATTTTGATTT+TGG | - | chr1.1:48746221-48746240 | MS.gene45418:intron | 20.0% |
| !!! | ATTTTGGTGGAAATTATTTT+TGG | - | chr1.1:48746237-48746256 | MS.gene45418:intron | 20.0% |
| !!! | CATTTAGAACTTATTTTGAT+GGG | - | chr1.1:48745051-48745070 | MS.gene45418:intron | 20.0% |
| !!! | TTTTTTTTTTTTTTGGAGAG+GGG | - | chr1.1:48745086-48745105 | MS.gene45418:intron | 20.0% |
| ! | AAAATTAACAGTTCATAGTG+TGG | + | chr1.1:48746085-48746104 | None:intergenic | 25.0% |
| ! | AATTTCCACCAAAATCAAAA+TGG | + | chr1.1:48746232-48746251 | None:intergenic | 25.0% |
| ! | ACAATATTAGGTCACTTAAA+TGG | + | chr1.1:48744926-48744945 | None:intergenic | 25.0% |
| ! | ACAGTTTGATATTGCTAATA+GGG | - | chr1.1:48745505-48745524 | MS.gene45418:intron | 25.0% |
| ! | AGATTGTGAATTTGTGATTA+AGG | + | chr1.1:48745726-48745745 | None:intergenic | 25.0% |
| ! | ATGATTTCAGCATAAAGATA+TGG | + | chr1.1:48744515-48744534 | None:intergenic | 25.0% |
| ! | GATTATAATATAACGATGCT+TGG | - | chr1.1:48745460-48745479 | MS.gene45418:intron | 25.0% |
| ! | TGATTTCAGCATAAAGATAT+GGG | + | chr1.1:48744514-48744533 | None:intergenic | 25.0% |
| !! | AAGTTTCGTTTTATGATTGA+TGG | - | chr1.1:48744579-48744598 | MS.gene45418:intron | 25.0% |
| !! | AGTTTCGTTTTATGATTGAT+GGG | - | chr1.1:48744580-48744599 | MS.gene45418:intron | 25.0% |
| !! | ATCATGTACCAATTTTATCT+TGG | + | chr1.1:48745776-48745795 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTTTTTGGAGAGG+GGG | - | chr1.1:48745087-48745106 | MS.gene45418:intron | 25.0% |
| AAAAGAAGATCAACGTTAGT+GGG | - | chr1.1:48744323-48744342 | MS.gene45418:CDS | 30.0% | |
| AAATGTAATCAAGATGAACG+AGG | + | chr1.1:48744997-48745016 | None:intergenic | 30.0% | |
| AAATTCACAATCTGTGTGAA+TGG | - | chr1.1:48745733-48745752 | MS.gene45418:intron | 30.0% | |
| AATGTAATCAAGATGAACGA+GGG | + | chr1.1:48744996-48745015 | None:intergenic | 30.0% | |
| AATTCACAATCTGTGTGAAT+GGG | - | chr1.1:48745734-48745753 | MS.gene45418:intron | 30.0% | |
| AGAATGCAATCTTACTTGAA+AGG | - | chr1.1:48746334-48746353 | MS.gene45418:CDS | 30.0% | |
| AGTGTTACATTCATAGACTA+AGG | + | chr1.1:48744651-48744670 | None:intergenic | 30.0% | |
| ATACATGTTAGTGTTCTGTT+CGG | - | chr1.1:48745363-48745382 | MS.gene45418:intron | 30.0% | |
| ATGTTGTTAATCTCAGATAG+TGG | + | chr1.1:48745304-48745323 | None:intergenic | 30.0% | |
| CGTGTTTGATTGTTTGATTA+TGG | - | chr1.1:48744952-48744971 | MS.gene45418:intron | 30.0% | |
| GAATGCAATCTTACTTGAAA+GGG | - | chr1.1:48746335-48746354 | MS.gene45418:CDS | 30.0% | |
| GACAGTTTGATATTGCTAAT+AGG | - | chr1.1:48745504-48745523 | MS.gene45418:intron | 30.0% | |
| GCAAATTTATGGTTAATACC+AGG | + | chr1.1:48745934-48745953 | None:intergenic | 30.0% | |
| GTTCAAGTATTATACCATTG+TGG | - | chr1.1:48745676-48745695 | MS.gene45418:intron | 30.0% | |
| TAATCAAACAATCAAACACG+AGG | + | chr1.1:48744952-48744971 | None:intergenic | 30.0% | |
| TTGTGAATTTGTGATTAAGG+CGG | + | chr1.1:48745723-48745742 | None:intergenic | 30.0% | |
| ! | AGATTTTACAGGAAAGACAA+AGG | + | chr1.1:48745866-48745885 | None:intergenic | 30.0% |
| ! | ATTTGGGACTGATTATAAGT+TGG | + | chr1.1:48746128-48746147 | None:intergenic | 30.0% |
| ! | ATTTTACAGGAAAGACAAAG+GGG | + | chr1.1:48745864-48745883 | None:intergenic | 30.0% |
| ! | GATTTTACAGGAAAGACAAA+GGG | + | chr1.1:48745865-48745884 | None:intergenic | 30.0% |
| ! | TGCTGTTTATTTCAGACTTT+GGG | - | chr1.1:48744373-48744392 | MS.gene45418:intron | 30.0% |
| ! | TTCCTGTAAAATCTTTTGTG+TGG | - | chr1.1:48745872-48745891 | MS.gene45418:intron | 30.0% |
| !! | TTGCTGTTTATTTCAGACTT+TGG | - | chr1.1:48744372-48744391 | MS.gene45418:CDS | 30.0% |
| !! | TTGGCTTTTCTAATGTTCAT+GGG | - | chr1.1:48744347-48744366 | MS.gene45418:CDS | 30.0% |
| !!! | TTCTACCATTTTGATTTTGG+TGG | - | chr1.1:48746224-48746243 | MS.gene45418:intron | 30.0% |
| !!! | TTTGGCTTTTCTAATGTTCA+TGG | - | chr1.1:48744346-48744365 | MS.gene45418:CDS | 30.0% |
| AACACGAGGCTTACAATATT+AGG | + | chr1.1:48744938-48744957 | None:intergenic | 35.0% | |
| ACACTGACATTTCAGATTGA+AGG | - | chr1.1:48744666-48744685 | MS.gene45418:intron | 35.0% | |
| ATCGTGTCAGTATCAAACAA+AGG | + | chr1.1:48744713-48744732 | None:intergenic | 35.0% | |
| ATGAATAGTGGTAGAAAAGC+AGG | - | chr1.1:48744874-48744893 | MS.gene45418:intron | 35.0% | |
| ATTAAAACGACAGCTTGAAG+AGG | - | chr1.1:48746365-48746384 | MS.gene45418:CDS | 35.0% | |
| ATTCACAATCTGTGTGAATG+GGG | - | chr1.1:48745735-48745754 | MS.gene45418:intron | 35.0% | |
| CAAATCAAATGTTGCAGAAG+AGG | + | chr1.1:48744449-48744468 | None:intergenic | 35.0% | |
| CTACTCTTAAAGATGCTTTG+CGG | + | chr1.1:48744835-48744854 | None:intergenic | 35.0% | |
| CTCCTGGAATATAAAGTTGA+AGG | + | chr1.1:48746316-48746335 | None:intergenic | 35.0% | |
| CTTAAATGGTTAAACCGCTA+CGG | + | chr1.1:48744912-48744931 | None:intergenic | 35.0% | |
| GAAAAGAAGATCAACGTTAG+TGG | - | chr1.1:48744322-48744341 | MS.gene45418:CDS | 35.0% | |
| GACCTTCAACTTTATATTCC+AGG | - | chr1.1:48746311-48746330 | MS.gene45418:CDS | 35.0% | |
| GTGAATGACTAGAAAGGTTA+AGG | - | chr1.1:48745654-48745673 | MS.gene45418:intron | 35.0% | |
| GTTTGATATTGCTAATAGGG+AGG | - | chr1.1:48745508-48745527 | MS.gene45418:intron | 35.0% | |
| TACTCTATGAATCACAGACA+CGG | + | chr1.1:48745410-48745429 | None:intergenic | 35.0% | |
| TACTCTTAAAGATGCTTTGC+GGG | + | chr1.1:48744834-48744853 | None:intergenic | 35.0% | |
| TCCAAAGTGAATGACTAGAA+AGG | - | chr1.1:48745648-48745667 | MS.gene45418:intron | 35.0% | |
| TGAATAGTGGTAGAAAAGCA+GGG | - | chr1.1:48744875-48744894 | MS.gene45418:intron | 35.0% | |
| TTAAGAGTAGTGTGTGTTAG+CGG | - | chr1.1:48744845-48744864 | MS.gene45418:intron | 35.0% | |
| TTCTAGTCATTCACTTTGGA+AGG | + | chr1.1:48745648-48745667 | None:intergenic | 35.0% | |
| ! | ACCTTTCTAGTCATTCACTT+TGG | + | chr1.1:48745652-48745671 | None:intergenic | 35.0% |
| ! | TGCCACACAAAAGATTTTAC+AGG | + | chr1.1:48745877-48745896 | None:intergenic | 35.0% |
| ! | TTATCCTTGTTTCCCTAAGA+TGG | + | chr1.1:48746046-48746065 | None:intergenic | 35.0% |
| !! | ATTGACTTGAGCAAAATCAG+CGG | + | chr1.1:48746177-48746196 | None:intergenic | 35.0% |
| !! | TTTTTGGCATTCTTTTGGCA+TGG | - | chr1.1:48746253-48746272 | MS.gene45418:intron | 35.0% |
| AATTTGTGATTAAGGCGGCT+AGG | + | chr1.1:48745718-48745737 | None:intergenic | 40.0% | |
| AGTATGATAAGGAGGTGGAT+AGG | - | chr1.1:48745561-48745580 | MS.gene45418:intron | 40.0% | |
| CAAGTAAGATTGCATTCTCC+TGG | + | chr1.1:48746332-48746351 | None:intergenic | 40.0% | |
| GAGGCTAAAGTATGATAAGG+AGG | - | chr1.1:48745553-48745572 | MS.gene45418:intron | 40.0% | |
| GCTAAAGTATGATAAGGAGG+TGG | - | chr1.1:48745556-48745575 | MS.gene45418:intron | 40.0% | |
| GTATGATAAGGAGGTGGATA+GGG | - | chr1.1:48745562-48745581 | MS.gene45418:intron | 40.0% | |
| GTCTCCTACATATAGTTGAG+TGG | + | chr1.1:48745487-48745506 | None:intergenic | 40.0% | |
| GTGCTTAAAGGAACTTCAAG+TGG | - | chr1.1:48745592-48745611 | MS.gene45418:intron | 40.0% | |
| GTGGAGGCTAAAGTATGATA+AGG | - | chr1.1:48745550-48745569 | MS.gene45418:intron | 40.0% | |
| TATTGCTAATAGGGAGGCAA+TGG | - | chr1.1:48745514-48745533 | MS.gene45418:intron | 40.0% | |
| TCAGTATCAAACAAAGGCAG+TGG | + | chr1.1:48744707-48744726 | None:intergenic | 40.0% | |
| TCGATGATTCTGAGCTCATA+AGG | - | chr1.1:48744417-48744436 | MS.gene45418:intron | 40.0% | |
| TCTATTCCCTAGCCATCTTA+GGG | - | chr1.1:48746031-48746050 | MS.gene45418:intron | 40.0% | |
| TGCAATCTTACTTGAAAGGG+TGG | - | chr1.1:48746338-48746357 | MS.gene45418:CDS | 40.0% | |
| TGGTCCACTCAACTATATGT+AGG | - | chr1.1:48745480-48745499 | MS.gene45418:intron | 40.0% | |
| TTCTATTCCCTAGCCATCTT+AGG | - | chr1.1:48746030-48746049 | MS.gene45418:intron | 40.0% | |
| TTGTTTCCCTAAGATGGCTA+GGG | + | chr1.1:48746040-48746059 | None:intergenic | 40.0% | |
| TTTCAGATTGAAGGTCTGTC+TGG | - | chr1.1:48744675-48744694 | MS.gene45418:intron | 40.0% | |
| ! | TATACCGCTAGAGCATCTTT+GGG | - | chr1.1:48745263-48745282 | MS.gene45418:intron | 40.0% |
| ! | TGAAGTACTACGAACCACAA+TGG | + | chr1.1:48745693-48745712 | None:intergenic | 40.0% |
| ! | TTGACTTGAGCAAAATCAGC+GGG | + | chr1.1:48746176-48746195 | None:intergenic | 40.0% |
| !! | AAGATCAACGTTAGTGGGTT+TGG | - | chr1.1:48744328-48744347 | MS.gene45418:CDS | 40.0% |
| !! | GTTAATACCAGGAGCATCTT+TGG | + | chr1.1:48745923-48745942 | None:intergenic | 40.0% |
| AAGATGCTCTAGCGGTATAG+CGG | + | chr1.1:48745262-48745281 | None:intergenic | 45.0% | |
| ACTACACTACACCGCAATAG+CGG | + | chr1.1:48744789-48744808 | None:intergenic | 45.0% | |
| CAATGGATGAATCTGCTGAG+TGG | - | chr1.1:48745531-48745550 | MS.gene45418:intron | 45.0% | |
| CTAGCCATCTTAGGGAAACA+AGG | - | chr1.1:48746039-48746058 | MS.gene45418:intron | 45.0% | |
| CTTGTTTCCCTAAGATGGCT+AGG | + | chr1.1:48746041-48746060 | None:intergenic | 45.0% | |
| GTATCAAACAAAGGCAGTGG+TGG | + | chr1.1:48744704-48744723 | None:intergenic | 45.0% | |
| TAGCGGTTGCGAATGAATAG+TGG | - | chr1.1:48744862-48744881 | MS.gene45418:intron | 45.0% | |
| TAGGGTGAATGGGTGCTTAA+AGG | - | chr1.1:48745580-48745599 | MS.gene45418:intron | 45.0% | |
| ! | ATACCGCTAGAGCATCTTTG+GGG | - | chr1.1:48745264-48745283 | MS.gene45418:intron | 45.0% |
| ! | CTATACCGCTAGAGCATCTT+TGG | - | chr1.1:48745262-48745281 | MS.gene45418:intron | 45.0% |
| ! | TTGAGCAAAATCAGCGGGTT+CGG | + | chr1.1:48746171-48746190 | None:intergenic | 45.0% |
| !!! | ACAATATTTTTTTTTTTTTT+TGG | - | chr1.1:48745079-48745098 | MS.gene45418:intron | 5.0% |
| AAGGAGGTGGATAGGGTGAA+TGG | - | chr1.1:48745569-48745588 | MS.gene45418:intron | 50.0% | |
| AGGAGGTGGATAGGGTGAAT+GGG | - | chr1.1:48745570-48745589 | MS.gene45418:intron | 50.0% | |
| ATGGTTAAACCGCTACGGCA+TGG | + | chr1.1:48744907-48744926 | None:intergenic | 50.0% | |
| CAGATAGCCAAAGATGCTCC+TGG | - | chr1.1:48745913-48745932 | MS.gene45418:intron | 50.0% | |
| TGGATGAATCTGCTGAGTGG+AGG | - | chr1.1:48745534-48745553 | MS.gene45418:intron | 50.0% | |
| ! | GAGGGCATGATGAAAGAGAG+CGG | + | chr1.1:48744978-48744997 | None:intergenic | 50.0% |
| ! | GCACTATAGTGCCGCTATTG+CGG | - | chr1.1:48744775-48744794 | MS.gene45418:CDS | 50.0% |
| ! | TACCGCTAGAGCATCTTTGG+GGG | - | chr1.1:48745265-48745284 | MS.gene45418:intron | 50.0% |
| !! | GGTATAGCGGATAGCAGGAT+GGG | + | chr1.1:48745249-48745268 | None:intergenic | 50.0% |
| GACCCCCAAAGATGCTCTAG+CGG | + | chr1.1:48745270-48745289 | None:intergenic | 55.0% | |
| TGTCCCCACTGTCACAGCAT+AGG | - | chr1.1:48744808-48744827 | MS.gene45418:intron | 55.0% | |
| !! | CGGTATAGCGGATAGCAGGA+TGG | + | chr1.1:48745250-48745269 | None:intergenic | 55.0% |
| !! | CTAGCGGTATAGCGGATAGC+AGG | + | chr1.1:48745254-48745273 | None:intergenic | 55.0% |
| !! | TTCGGTGTCAGTGTCCTGTG+TGG | - | chr1.1:48745381-48745400 | MS.gene45418:intron | 55.0% |
| CACAGACACGGACACCACAC+AGG | + | chr1.1:48745398-48745417 | None:intergenic | 60.0% | |
| CGGGCCTATGCTGTGACAGT+GGG | + | chr1.1:48744815-48744834 | None:intergenic | 60.0% | |
| GGGCAATTGCCATGCCGTAG+CGG | - | chr1.1:48744895-48744914 | MS.gene45418:intron | 60.0% | |
| GGGCCTATGCTGTGACAGTG+GGG | + | chr1.1:48744814-48744833 | None:intergenic | 60.0% | |
| GCGGGCCTATGCTGTGACAG+TGG | + | chr1.1:48744816-48744835 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 48744311 | 48746413 | 48744311 | ID=MS.gene45418 |
| chr1.1 | mRNA | 48744311 | 48746413 | 48744311 | ID=MS.gene45418.t1;Parent=MS.gene45418 |
| chr1.1 | exon | 48746286 | 48746413 | 48746286 | ID=MS.gene45418.t1.exon1;Parent=MS.gene45418.t1 |
| chr1.1 | CDS | 48746286 | 48746413 | 48746286 | ID=cds.MS.gene45418.t1;Parent=MS.gene45418.t1 |
| chr1.1 | exon | 48745111 | 48745222 | 48745111 | ID=MS.gene45418.t1.exon2;Parent=MS.gene45418.t1 |
| chr1.1 | CDS | 48745111 | 48745222 | 48745111 | ID=cds.MS.gene45418.t1;Parent=MS.gene45418.t1 |
| chr1.1 | exon | 48744758 | 48744826 | 48744758 | ID=MS.gene45418.t1.exon3;Parent=MS.gene45418.t1 |
| chr1.1 | CDS | 48744758 | 48744826 | 48744758 | ID=cds.MS.gene45418.t1;Parent=MS.gene45418.t1 |
| chr1.1 | exon | 48744311 | 48744391 | 48744311 | ID=MS.gene45418.t1.exon4;Parent=MS.gene45418.t1 |
| chr1.1 | CDS | 48744311 | 48744391 | 48744311 | ID=cds.MS.gene45418.t1;Parent=MS.gene45418.t1 |
| Gene Sequence |
| Protein sequence |
