Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45487.t1 | XP_013442989.1 | 90.6 | 191 | 11 | 2 | 1 | 188 | 1 | 187 | 1.30E-85 | 325.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45487.t1 | Q9MA15 | 64.3 | 115 | 41 | 0 | 74 | 188 | 77 | 191 | 5.6e-37 | 155.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45487.t1 | A0A072THI5 | 90.6 | 191 | 11 | 2 | 1 | 188 | 1 | 187 | 9.3e-86 | 325.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050670 | MS.gene45487 | 0.823262 | 1.52E-53 | -1.69E-46 |
| MS.gene051525 | MS.gene45487 | 0.801927 | 7.15E-49 | -1.69E-46 |
| MS.gene051588 | MS.gene45487 | 0.816339 | 5.82E-52 | -1.69E-46 |
| MS.gene052414 | MS.gene45487 | 0.829529 | 4.89E-55 | -1.69E-46 |
| MS.gene054102 | MS.gene45487 | 0.812865 | 3.42E-51 | -1.69E-46 |
| MS.gene054183 | MS.gene45487 | 0.809426 | 1.90E-50 | -1.69E-46 |
| MS.gene055539 | MS.gene45487 | 0.801943 | 7.09E-49 | -1.69E-46 |
| MS.gene055741 | MS.gene45487 | 0.807593 | 4.69E-50 | -1.69E-46 |
| MS.gene055744 | MS.gene45487 | 0.818283 | 2.12E-52 | -1.69E-46 |
| MS.gene056514 | MS.gene45487 | 0.837263 | 5.76E-57 | -1.69E-46 |
| MS.gene058007 | MS.gene45487 | 0.805804 | 1.12E-49 | -1.69E-46 |
| MS.gene059420 | MS.gene45487 | 0.804424 | 2.17E-49 | -1.69E-46 |
| MS.gene059807 | MS.gene45487 | 0.819145 | 1.35E-52 | -1.69E-46 |
| MS.gene059868 | MS.gene45487 | 0.810082 | 1.38E-50 | -1.69E-46 |
| MS.gene059933 | MS.gene45487 | 0.804809 | 1.81E-49 | -1.69E-46 |
| MS.gene060372 | MS.gene45487 | 0.819586 | 1.07E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45487.t1 | MTR_0053s0030 | 90.576 | 191 | 11 | 2 | 1 | 188 | 1 | 187 | 1.01e-114 | 342 |
| MS.gene45487.t1 | MTR_4g026450 | 52.020 | 198 | 79 | 5 | 2 | 188 | 7 | 199 | 7.05e-52 | 177 |
| MS.gene45487.t1 | MTR_6g038750 | 38.710 | 93 | 55 | 2 | 93 | 184 | 78 | 169 | 1.28e-12 | 65.9 |
| MS.gene45487.t1 | MTR_1g046620 | 29.530 | 149 | 100 | 2 | 37 | 183 | 78 | 223 | 5.17e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45487.t1 | AT1G79600 | 64.407 | 118 | 39 | 1 | 74 | 188 | 77 | 194 | 1.28e-45 | 160 |
| MS.gene45487.t1 | AT3G24190 | 35.870 | 92 | 59 | 0 | 92 | 183 | 140 | 231 | 3.92e-13 | 67.4 |
Find 46 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGACCATATTCACAAATT+TGG | 0.128326 | 2.1:-6870237 | MS.gene45487:CDS |
| GAATTGTTGGCTTCTAAATA+TGG | 0.152719 | 2.1:-6871376 | MS.gene45487:CDS |
| CATTTGCCCACCTGAATATT+TGG | 0.168236 | 2.1:-6870168 | MS.gene45487:CDS |
| TGGTCCCAAATTTGTGAATA+TGG | 0.278942 | 2.1:+6870232 | None:intergenic |
| GAGAGTTCTTCCAAATATTC+AGG | 0.282444 | 2.1:+6870158 | None:intergenic |
| TATTTAGAAGCCAACAATTC+AGG | 0.302555 | 2.1:+6871379 | None:intergenic |
| AAGACCATATTCACAAATTT+GGG | 0.307258 | 2.1:-6870236 | MS.gene45487:CDS |
| GGAAGAACTCTCTGAGCTTC+AGG | 0.314029 | 2.1:-6870147 | MS.gene45487:intron |
| GTGAGTGCTTTGGGTTCATT+TGG | 0.326353 | 2.1:-6870329 | MS.gene45487:CDS |
| GTTGAAATTGTGAGTGCTTT+GGG | 0.327077 | 2.1:-6870338 | MS.gene45487:CDS |
| ATCGTACCTTTGGTTAGAAA+TGG | 0.357079 | 2.1:-6871499 | MS.gene45487:CDS |
| GACACTTGATAAGAATAAAA+AGG | 0.358611 | 2.1:-6870276 | MS.gene45487:CDS |
| TCTGTATGGTCCTGAATTGT+TGG | 0.372909 | 2.1:-6871389 | MS.gene45487:CDS |
| TGTTGAAATTGTGAGTGCTT+TGG | 0.381233 | 2.1:-6870339 | MS.gene45487:CDS |
| AATTGTTGGCTTCTAAATAT+GGG | 0.410967 | 2.1:-6871375 | MS.gene45487:CDS |
| GCCACTGTTTCCTGTGATAG+TGG | 0.427336 | 2.1:-6869414 | MS.gene45487:CDS |
| GCTATTAATGCTACTCTGTA+TGG | 0.440035 | 2.1:-6871403 | MS.gene45487:CDS |
| TACAAGTAACATCGTACCTT+TGG | 0.441869 | 2.1:-6871509 | MS.gene45487:CDS |
| TCGTTGGATAGGAATTGAAC+TGG | 0.469500 | 2.1:+6871603 | None:intergenic |
| TATTCAGGTGGGCAAATGTC+AGG | 0.469978 | 2.1:+6870173 | None:intergenic |
| CTGAAACGACGTCGTTGGAT+AGG | 0.472321 | 2.1:+6871592 | None:intergenic |
| TGACCTAACTTCACAAAAGT+TGG | 0.472861 | 2.1:+6870212 | None:intergenic |
| TGAGTGCTTTGGGTTCATTT+GGG | 0.477483 | 2.1:-6870328 | MS.gene45487:CDS |
| CACAACCATGTTATTCATCA+TGG | 0.483949 | 2.1:-6871642 | MS.gene45487:CDS |
| CAAAATTCTTGCTGCTGTGG+TGG | 0.496154 | 2.1:-6871545 | MS.gene45487:CDS |
| ATATCATCAGCACGGTTCAA+TGG | 0.498271 | 2.1:+6871454 | None:intergenic |
| TATGGTTTAGGTTGTACAAA+GGG | 0.520941 | 2.1:-6870363 | MS.gene45487:intron |
| AAAGGTACGATGTTACTTGT+AGG | 0.523602 | 2.1:+6871511 | None:intergenic |
| TTTGTTCCATTTCTAACCAA+AGG | 0.539371 | 2.1:+6871493 | None:intergenic |
| TGCCTCTGAAACGACGTCGT+TGG | 0.544692 | 2.1:+6871587 | None:intergenic |
| ATCCAACGACGTCGTTTCAG+AGG | 0.546238 | 2.1:-6871589 | MS.gene45487:CDS |
| TCTCAAAATTCTTGCTGCTG+TGG | 0.563774 | 2.1:-6871548 | MS.gene45487:CDS |
| TTGGTCTACTCCACTATCAC+AGG | 0.564955 | 2.1:+6869404 | None:intergenic |
| TAGGTCAAGGATCGTCCACT+AGG | 0.585067 | 2.1:-6870196 | MS.gene45487:CDS |
| ATATGGGTCCCAACGCATCA+AGG | 0.588051 | 2.1:-6871359 | MS.gene45487:intron |
| TGGGCAAATGTCAGGCCTAG+TGG | 0.591643 | 2.1:+6870181 | None:intergenic |
| AGTTCTTCCAAATATTCAGG+TGG | 0.604803 | 2.1:+6870161 | None:intergenic |
| TGCTGATGATATTCAAGCTG+AGG | 0.610385 | 2.1:-6871443 | MS.gene45487:CDS |
| TTATGGTTTAGGTTGTACAA+AGG | 0.612841 | 2.1:-6870364 | MS.gene45487:intron |
| CGAGTCCATGATGAATAACA+TGG | 0.613087 | 2.1:+6871637 | None:intergenic |
| TCCACTATCACAGGAAACAG+TGG | 0.629471 | 2.1:+6869413 | None:intergenic |
| GTTCTTCCAAATATTCAGGT+GGG | 0.636431 | 2.1:+6870162 | None:intergenic |
| CGTTGGATAGGAATTGAACT+GGG | 0.640236 | 2.1:+6871604 | None:intergenic |
| TGTTATTCATCATGGACTCG+TGG | 0.651746 | 2.1:-6871634 | MS.gene45487:CDS |
| CAGCTTGAATATCATCAGCA+CGG | 0.663261 | 2.1:+6871446 | None:intergenic |
| TCAATGGAAGTGTAAGAACA+CGG | 0.678089 | 2.1:+6871470 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATAATACAAACAAAATA+GGG | - | chr2.1:6869839-6869858 | MS.gene45487:intron | 10.0% |
| !! | TTATATAATACAAACAAAAT+AGG | - | chr2.1:6869838-6869857 | MS.gene45487:intron | 10.0% |
| !! | TGATTATTATGTACTTTATT+TGG | - | chr2.1:6870075-6870094 | MS.gene45487:intron | 15.0% |
| !!! | TTCAAATATACATAACTTTT+CGG | + | chr2.1:6870344-6870363 | None:intergenic | 15.0% |
| !! | AAAATGCAACTATATAAATG+AGG | + | chr2.1:6870970-6870989 | None:intergenic | 20.0% |
| !! | AAATGCAACTATATAAATGA+GGG | + | chr2.1:6870969-6870988 | None:intergenic | 20.0% |
| !! | ACATACACATAAAAAATTGT+AGG | + | chr2.1:6870276-6870295 | None:intergenic | 20.0% |
| !! | ATAAAAAATTGTAGGCAATA+AGG | + | chr2.1:6870268-6870287 | None:intergenic | 20.0% |
| !! | CAAATTTCAACAACAATATT+TGG | + | chr2.1:6870558-6870577 | None:intergenic | 20.0% |
| ! | AACCAATAAAACCAAAATCA+GGG | + | chr2.1:6870688-6870707 | None:intergenic | 25.0% |
| ! | AACTATATAAATGAGGGAAA+GGG | + | chr2.1:6870963-6870982 | None:intergenic | 25.0% |
| ! | AAGACCATATTCACAAATTT+GGG | - | chr2.1:6870834-6870853 | MS.gene45487:intron | 25.0% |
| ! | ATGTATATTTGAACACAGTT+TGG | - | chr2.1:6870351-6870370 | MS.gene45487:CDS | 25.0% |
| ! | CAAGAAAGAACTTTCAAAAA+GGG | + | chr2.1:6869927-6869946 | None:intergenic | 25.0% |
| ! | GACACTTGATAAGAATAAAA+AGG | - | chr2.1:6870794-6870813 | MS.gene45487:intron | 25.0% |
| ! | TAACCAATAAAACCAAAATC+AGG | + | chr2.1:6870689-6870708 | None:intergenic | 25.0% |
| ! | TCAAGAAAGAACTTTCAAAA+AGG | + | chr2.1:6869928-6869947 | None:intergenic | 25.0% |
| ! | TGTCATTAGTTACGATATTT+AGG | + | chr2.1:6870420-6870439 | None:intergenic | 25.0% |
| ! | TTGAATTCAAGCTCATAAAA+AGG | + | chr2.1:6871166-6871185 | None:intergenic | 25.0% |
| ! | TTTCAACAACAATATTTGGA+CGG | + | chr2.1:6870554-6870573 | None:intergenic | 25.0% |
| !! | ATGAATTCAAGTTTGAGTTA+AGG | + | chr2.1:6870595-6870614 | None:intergenic | 25.0% |
| !!! | AATTGTTGGCTTCTAAATAT+GGG | - | chr2.1:6869695-6869714 | MS.gene45487:intron | 25.0% |
| !!! | GATTTTGGTTTTATTGGTTA+TGG | - | chr2.1:6870689-6870708 | MS.gene45487:intron | 25.0% |
| !!! | TGTTTTTAGAGCAAAAGAAT+GGG | - | chr2.1:6870772-6870791 | MS.gene45487:intron | 25.0% |
| AACTAATGACATTCATGATG+TGG | - | chr2.1:6870429-6870448 | MS.gene45487:intron | 30.0% | |
| ACATATCTTACATCTGTTCT+AGG | - | chr2.1:6871445-6871464 | MS.gene45487:CDS | 30.0% | |
| AGACGGTTAATGAATATAAC+AGG | + | chr2.1:6870494-6870513 | None:intergenic | 30.0% | |
| ATAGTACTAGTTCATACATG+TGG | - | chr2.1:6870118-6870137 | MS.gene45487:intron | 30.0% | |
| ATATTTGAACACAGTTTGGT+TGG | - | chr2.1:6870355-6870374 | MS.gene45487:CDS | 30.0% | |
| ATTCAAGCTCTTGAACAATT+CGG | - | chr2.1:6871180-6871199 | MS.gene45487:intron | 30.0% | |
| CAACTATATAAATGAGGGAA+AGG | + | chr2.1:6870964-6870983 | None:intergenic | 30.0% | |
| GAACAGATGTAAGATATGTT+TGG | + | chr2.1:6871444-6871463 | None:intergenic | 30.0% | |
| GAAGACCATATTCACAAATT+TGG | - | chr2.1:6870833-6870852 | MS.gene45487:intron | 30.0% | |
| GACAATGCATAAAATATGCA+AGG | - | chr2.1:6871337-6871356 | MS.gene45487:intron | 30.0% | |
| GTAGTACTTGATTCACTAAT+TGG | - | chr2.1:6869948-6869967 | MS.gene45487:intron | 30.0% | |
| TATTTAGAAGCCAACAATTC+AGG | + | chr2.1:6869694-6869713 | None:intergenic | 30.0% | |
| TCATAAGGCGAAAAAAGTAA+TGG | + | chr2.1:6869749-6869768 | None:intergenic | 30.0% | |
| TGATGTGGTTAATTACAATC+AGG | - | chr2.1:6870444-6870463 | MS.gene45487:intron | 30.0% | |
| TTTGTTCCATTTCTAACCAA+AGG | + | chr2.1:6869580-6869599 | None:intergenic | 30.0% | |
| ! | GTACTTTATTTGGTACTTGT+AGG | - | chr2.1:6870085-6870104 | MS.gene45487:intron | 30.0% |
| ! | TTTTGTGCGATTTGAAAATG+TGG | - | chr2.1:6871049-6871068 | MS.gene45487:intron | 30.0% |
| !! | GAATTGTTGGCTTCTAAATA+TGG | - | chr2.1:6869694-6869713 | MS.gene45487:intron | 30.0% |
| !! | TATGGTTTAGGTTGTACAAA+GGG | - | chr2.1:6870707-6870726 | MS.gene45487:intron | 30.0% |
| !! | TTATGGTTTAGGTTGTACAA+AGG | - | chr2.1:6870706-6870725 | MS.gene45487:intron | 30.0% |
| !!! | AATGTTTTAACGTGTTTTGG+AGG | - | chr2.1:6869798-6869817 | MS.gene45487:intron | 30.0% |
| !!! | CTGTTTTTAGAGCAAAAGAA+TGG | - | chr2.1:6870771-6870790 | MS.gene45487:intron | 30.0% |
| !!! | GGAAATGTTTTAACGTGTTT+TGG | - | chr2.1:6869795-6869814 | MS.gene45487:intron | 30.0% |
| !!! | GGTTTTATTGGTTATGGTTT+AGG | - | chr2.1:6870695-6870714 | MS.gene45487:intron | 30.0% |
| !!! | TTGCGCACAGATTTTAAAAT+CGG | - | chr2.1:6869774-6869793 | MS.gene45487:intron | 30.0% |
| AAAAGGTTCATGATGAACTC+AGG | + | chr2.1:6871149-6871168 | None:intergenic | 35.0% | |
| AAACGCAGTCAATCATGATT+AGG | - | chr2.1:6870240-6870259 | MS.gene45487:CDS | 35.0% | |
| AAGTAAAAACCTTGATGCGT+TGG | + | chr2.1:6869723-6869742 | None:intergenic | 35.0% | |
| AATTGGTAGAGCTGTCAAAA+CGG | - | chr2.1:6869965-6869984 | MS.gene45487:intron | 35.0% | |
| AGTAAAAACCTTGATGCGTT+GGG | + | chr2.1:6869722-6869741 | None:intergenic | 35.0% | |
| AGTTCTTCCAAATATTCAGG+TGG | + | chr2.1:6870912-6870931 | None:intergenic | 35.0% | |
| ATCAATAGGGTAGGAAAAGA+AGG | - | chr2.1:6869872-6869891 | MS.gene45487:intron | 35.0% | |
| ATCGTACCTTTGGTTAGAAA+TGG | - | chr2.1:6869571-6869590 | MS.gene45487:intron | 35.0% | |
| CACAACCATGTTATTCATCA+TGG | - | chr2.1:6869428-6869447 | MS.gene45487:intron | 35.0% | |
| GAGAGTTCTTCCAAATATTC+AGG | + | chr2.1:6870915-6870934 | None:intergenic | 35.0% | |
| GCTATTAATGCTACTCTGTA+TGG | - | chr2.1:6869667-6869686 | MS.gene45487:intron | 35.0% | |
| GCTCAATAGTTTGACTCATT+TGG | - | chr2.1:6871207-6871226 | MS.gene45487:intron | 35.0% | |
| GCTTAGGACAGAACAAAATT+AGG | - | chr2.1:6871018-6871037 | MS.gene45487:intron | 35.0% | |
| GGTTGATTACGTTCAATAGA+CGG | + | chr2.1:6870511-6870530 | None:intergenic | 35.0% | |
| GTATGCATGCAATGTAGATT+GGG | - | chr2.1:6870643-6870662 | MS.gene45487:intron | 35.0% | |
| GTCAGTGCAATTTAAATACG+TGG | + | chr2.1:6870532-6870551 | None:intergenic | 35.0% | |
| GTTAATTACAATCAGGTCGA+TGG | - | chr2.1:6870451-6870470 | MS.gene45487:intron | 35.0% | |
| GTTCTTCCAAATATTCAGGT+GGG | + | chr2.1:6870911-6870930 | None:intergenic | 35.0% | |
| GTTGAAATTGTGAGTGCTTT+GGG | - | chr2.1:6870732-6870751 | MS.gene45487:intron | 35.0% | |
| TACAAGTAACATCGTACCTT+TGG | - | chr2.1:6869561-6869580 | MS.gene45487:intron | 35.0% | |
| TCATGATTGACTGCGTTTAA+TGG | + | chr2.1:6870238-6870257 | None:intergenic | 35.0% | |
| TGACCTAACTTCACAAAAGT+TGG | + | chr2.1:6870861-6870880 | None:intergenic | 35.0% | |
| TGCATAAAATATGCAAGGTC+CGG | - | chr2.1:6871342-6871361 | MS.gene45487:intron | 35.0% | |
| TGGTCCCAAATTTGTGAATA+TGG | + | chr2.1:6870841-6870860 | None:intergenic | 35.0% | |
| TGTATGCATGCAATGTAGAT+TGG | - | chr2.1:6870642-6870661 | MS.gene45487:intron | 35.0% | |
| TGTTGAAATTGTGAGTGCTT+TGG | - | chr2.1:6870731-6870750 | MS.gene45487:intron | 35.0% | |
| ! | AAAGGTACGATGTTACTTGT+AGG | + | chr2.1:6869562-6869581 | None:intergenic | 35.0% |
| ! | AACACAGTTTGGTTGGTTAA+CGG | - | chr2.1:6870362-6870381 | MS.gene45487:intron | 35.0% |
| ! | ACTTTTGTGAAGTTAGGTCA+AGG | - | chr2.1:6870861-6870880 | MS.gene45487:intron | 35.0% |
| ! | CAATGTAGATTGGGTTTTTG+AGG | - | chr2.1:6870652-6870671 | MS.gene45487:intron | 35.0% |
| ! | GATAAGAATAAAAAGGCACG+TGG | - | chr2.1:6870801-6870820 | MS.gene45487:intron | 35.0% |
| ! | TCAATGGAAGTGTAAGAACA+CGG | + | chr2.1:6869603-6869622 | None:intergenic | 35.0% |
| ! | TTGGTTGGTTAACGGATAAT+CGG | - | chr2.1:6870370-6870389 | MS.gene45487:intron | 35.0% |
| !! | ACATGTTCTATGTGTTGCTT+AGG | - | chr2.1:6871002-6871021 | MS.gene45487:intron | 35.0% |
| !!! | AATTTTGAGACGTTTGAGGT+AGG | + | chr2.1:6869512-6869531 | None:intergenic | 35.0% |
| !!! | CAAGAATTTTGAGACGTTTG+AGG | + | chr2.1:6869516-6869535 | None:intergenic | 35.0% |
| !!! | GACCCTGATTTTGGTTTTAT+TGG | - | chr2.1:6870683-6870702 | MS.gene45487:intron | 35.0% |
| !!! | GGTTGACAGTGAACTTTTTT+TGG | + | chr2.1:6871388-6871407 | None:intergenic | 35.0% |
| !!! | TGACAGTGAACTTTTTTTGG+TGG | + | chr2.1:6871385-6871404 | None:intergenic | 35.0% |
| ACACAAAGAAGCTAGTTACC+TGG | + | chr2.1:6871569-6871588 | None:intergenic | 40.0% | |
| ATATCATCAGCACGGTTCAA+TGG | + | chr2.1:6869619-6869638 | None:intergenic | 40.0% | |
| ATTGGTAGAGCTGTCAAAAC+GGG | - | chr2.1:6869966-6869985 | MS.gene45487:intron | 40.0% | |
| CAGCTTGAATATCATCAGCA+CGG | + | chr2.1:6869627-6869646 | None:intergenic | 40.0% | |
| CATAAAATATGCAAGGTCCG+GGG | - | chr2.1:6871344-6871363 | MS.gene45487:intron | 40.0% | |
| CATTTGCCCACCTGAATATT+TGG | - | chr2.1:6870902-6870921 | MS.gene45487:intron | 40.0% | |
| CGAGTCCATGATGAATAACA+TGG | + | chr2.1:6869436-6869455 | None:intergenic | 40.0% | |
| CGTTGGATAGGAATTGAACT+GGG | + | chr2.1:6869469-6869488 | None:intergenic | 40.0% | |
| CTAGCTTCTTTGTGTATGCT+TGG | - | chr2.1:6871574-6871593 | MS.gene45487:CDS | 40.0% | |
| CTGTAAAACTGCCCTATGTA+GGG | + | chr2.1:6871409-6871428 | None:intergenic | 40.0% | |
| GCATAAAATATGCAAGGTCC+GGG | - | chr2.1:6871343-6871362 | MS.gene45487:intron | 40.0% | |
| GCGATTTGAAAATGTGGCTA+GGG | - | chr2.1:6871055-6871074 | MS.gene45487:intron | 40.0% | |
| GGGTTGAAAATGAGTCGAAT+TGG | - | chr2.1:6871075-6871094 | MS.gene45487:intron | 40.0% | |
| TACTCAGTTGCACCGAATAT+AGG | + | chr2.1:6871489-6871508 | None:intergenic | 40.0% | |
| TCGTTGGATAGGAATTGAAC+TGG | + | chr2.1:6869470-6869489 | None:intergenic | 40.0% | |
| TCTCAAAATTCTTGCTGCTG+TGG | - | chr2.1:6869522-6869541 | MS.gene45487:intron | 40.0% | |
| TCTGTATGGTCCTGAATTGT+TGG | - | chr2.1:6869681-6869700 | MS.gene45487:intron | 40.0% | |
| TGCGATTTGAAAATGTGGCT+AGG | - | chr2.1:6871054-6871073 | MS.gene45487:intron | 40.0% | |
| TGCTGATGATATTCAAGCTG+AGG | - | chr2.1:6869627-6869646 | MS.gene45487:intron | 40.0% | |
| TGTTATTCATCATGGACTCG+TGG | - | chr2.1:6869436-6869455 | MS.gene45487:intron | 40.0% | |
| TTCACTGTCAACCCTACATA+GGG | - | chr2.1:6871395-6871414 | MS.gene45487:CDS | 40.0% | |
| ! | GGACCAACTTTTGTGAAGTT+AGG | - | chr2.1:6870855-6870874 | MS.gene45487:intron | 40.0% |
| ! | TGAGTGCTTTGGGTTCATTT+GGG | - | chr2.1:6870742-6870761 | MS.gene45487:intron | 40.0% |
| !! | ATTTTGACAGCTCTACTGGT+TGG | - | chr2.1:6870001-6870020 | MS.gene45487:intron | 40.0% |
| !! | GTACTTGGTGAACTTTTGCT+TGG | - | chr2.1:6871543-6871562 | MS.gene45487:CDS | 40.0% |
| !!! | CAGTGAACTTTTTTTGGTGG+TGG | + | chr2.1:6871382-6871401 | None:intergenic | 40.0% |
| !!! | GATTGATTCGACCCTGATTT+TGG | - | chr2.1:6870674-6870693 | MS.gene45487:intron | 40.0% |
| !!! | GTCTATTTTGACAGCTCTAC+TGG | - | chr2.1:6869997-6870016 | MS.gene45487:intron | 40.0% |
| ACACCACAGTCATTGACATC+TGG | - | chr2.1:6871508-6871527 | MS.gene45487:CDS | 45.0% | |
| AGAGCTCCTGAGCCTATATT+CGG | - | chr2.1:6871474-6871493 | MS.gene45487:CDS | 45.0% | |
| CAAAATTCTTGCTGCTGTGG+TGG | - | chr2.1:6869525-6869544 | MS.gene45487:intron | 45.0% | |
| CCTGTAAAACTGCCCTATGT+AGG | + | chr2.1:6871410-6871429 | None:intergenic | 45.0% | |
| CTGTGCGCAAGAAACTCATA+AGG | + | chr2.1:6869764-6869783 | None:intergenic | 45.0% | |
| GCGTGAGAAATCAATAGGGT+AGG | - | chr2.1:6869863-6869882 | MS.gene45487:intron | 45.0% | |
| GTTCACTGTCAACCCTACAT+AGG | - | chr2.1:6871394-6871413 | MS.gene45487:CDS | 45.0% | |
| TATTCAGGTGGGCAAATGTC+AGG | + | chr2.1:6870900-6870919 | None:intergenic | 45.0% | |
| TCCACTATCACAGGAAACAG+TGG | + | chr2.1:6871660-6871679 | None:intergenic | 45.0% | |
| TGACCAGATGTCAATGACTG+TGG | + | chr2.1:6871514-6871533 | None:intergenic | 45.0% | |
| TGAGCTTAGCTCAGTTGGTT+GGG | - | chr2.1:6871315-6871334 | MS.gene45487:intron | 45.0% | |
| ! | CCTACATAGGGCAGTTTTAC+AGG | - | chr2.1:6871407-6871426 | MS.gene45487:CDS | 45.0% |
| ! | GTGAGTGCTTTGGGTTCATT+TGG | - | chr2.1:6870741-6870760 | MS.gene45487:intron | 45.0% |
| !!! | AACTTTTTTTGGTGGTGGCC+GGG | + | chr2.1:6871377-6871396 | None:intergenic | 45.0% |
| !!! | GAACTTTTTTTGGTGGTGGC+CGG | + | chr2.1:6871378-6871397 | None:intergenic | 45.0% |
| AGGGCGCGTGAGAAATCAAT+AGG | - | chr2.1:6869858-6869877 | MS.gene45487:intron | 50.0% | |
| ATATGGGTCCCAACGCATCA+AGG | - | chr2.1:6869711-6869730 | MS.gene45487:intron | 50.0% | |
| ATCCAACGACGTCGTTTCAG+AGG | - | chr2.1:6869481-6869500 | MS.gene45487:intron | 50.0% | |
| CTGAAACGACGTCGTTGGAT+AGG | + | chr2.1:6869481-6869500 | None:intergenic | 50.0% | |
| GCCACTGTTTCCTGTGATAG+TGG | - | chr2.1:6871656-6871675 | MS.gene45487:CDS | 50.0% | |
| GGAAGAACTCTCTGAGCTTC+AGG | - | chr2.1:6870923-6870942 | MS.gene45487:intron | 50.0% | |
| GGGCGCGTGAGAAATCAATA+GGG | - | chr2.1:6869859-6869878 | MS.gene45487:intron | 50.0% | |
| GTCATTGACATCTGGTCAGC+TGG | - | chr2.1:6871516-6871535 | MS.gene45487:CDS | 50.0% | |
| GTGAGCTTAGCTCAGTTGGT+TGG | - | chr2.1:6871314-6871333 | MS.gene45487:intron | 50.0% | |
| GTTGCACCGAATATAGGCTC+AGG | + | chr2.1:6871483-6871502 | None:intergenic | 50.0% | |
| TAGGTCAAGGATCGTCCACT+AGG | - | chr2.1:6870874-6870893 | MS.gene45487:intron | 50.0% | |
| ! | TGGTGAACTTTTGCTTGGCC+AGG | - | chr2.1:6871548-6871567 | MS.gene45487:CDS | 50.0% |
| !! | GCTGTCAAAACGGGCTAAAG+TGG | - | chr2.1:6869975-6869994 | MS.gene45487:intron | 50.0% |
| CCAACTGAGCTAAGCTCACG+AGG | + | chr2.1:6871313-6871332 | None:intergenic | 55.0% | |
| CCTCGTGAGCTTAGCTCAGT+TGG | - | chr2.1:6871310-6871329 | MS.gene45487:intron | 55.0% | |
| TGGGCAAATGTCAGGCCTAG+TGG | + | chr2.1:6870892-6870911 | None:intergenic | 55.0% | |
| TGGTCAGCTGGTTGCGTACT+TGG | - | chr2.1:6871528-6871547 | MS.gene45487:CDS | 55.0% | |
| !! | TGCCTCTGAAACGACGTCGT+TGG | + | chr2.1:6869486-6869505 | None:intergenic | 55.0% |
| AAGGTCCGGGGTTCGATTCC+CGG | - | chr2.1:6871356-6871375 | MS.gene45487:intron | 60.0% | |
| GGTGGCCGGGAATCGAACCC+CGG | + | chr2.1:6871364-6871383 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.1 | gene | 6869409 | 6871683 | 6869409 | ID=MS.gene45487 |
| chr2.1 | mRNA | 6869409 | 6871683 | 6869409 | ID=MS.gene45487.t1;Parent=MS.gene45487 |
| chr2.1 | exon | 6871360 | 6871683 | 6871360 | ID=MS.gene45487.t1.exon1;Parent=MS.gene45487.t1 |
| chr2.1 | CDS | 6871360 | 6871683 | 6871360 | ID=cds.MS.gene45487.t1;Parent=MS.gene45487.t1 |
| chr2.1 | exon | 6870148 | 6870375 | 6870148 | ID=MS.gene45487.t1.exon2;Parent=MS.gene45487.t1 |
| chr2.1 | CDS | 6870148 | 6870375 | 6870148 | ID=cds.MS.gene45487.t1;Parent=MS.gene45487.t1 |
| chr2.1 | exon | 6869409 | 6869435 | 6869409 | ID=MS.gene45487.t1.exon3;Parent=MS.gene45487.t1 |
| chr2.1 | CDS | 6869409 | 6869435 | 6869409 | ID=cds.MS.gene45487.t1;Parent=MS.gene45487.t1 |
| Gene Sequence |
| Protein sequence |
