Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45495.t1 | XP_013465396.1 | 92.9 | 693 | 44 | 3 | 1 | 689 | 1 | 692 | 0.00E+00 | 1219.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45495.t1 | F4HSD5 | 27.0 | 701 | 346 | 27 | 1 | 687 | 1 | 549 | 2.6e-28 | 128.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45495.t1 | A0A072VCX1 | 92.9 | 693 | 44 | 3 | 1 | 689 | 1 | 692 | 0.0e+00 | 1219.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051121 | MS.gene45495 | 0.8105 | 1.12E-50 | -1.69E-46 |
| MS.gene052040 | MS.gene45495 | 0.802727 | 4.89E-49 | -1.69E-46 |
| MS.gene052118 | MS.gene45495 | 0.85475 | 1.00E-61 | -1.69E-46 |
| MS.gene054892 | MS.gene45495 | 0.801767 | 7.71E-49 | -1.69E-46 |
| MS.gene05624 | MS.gene45495 | 0.819801 | 9.60E-53 | -1.69E-46 |
| MS.gene05952 | MS.gene45495 | 0.824682 | 7.07E-54 | -1.69E-46 |
| MS.gene060522 | MS.gene45495 | 0.825866 | 3.71E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45495.t1 | MTR_2g096870 | 92.929 | 693 | 44 | 3 | 1 | 689 | 1 | 692 | 0.0 | 1311 |
| MS.gene45495.t1 | MTR_2g096870 | 88.098 | 731 | 44 | 4 | 1 | 689 | 1 | 730 | 0.0 | 1290 |
| MS.gene45495.t1 | MTR_1g047660 | 40.361 | 166 | 98 | 1 | 525 | 689 | 682 | 847 | 1.32e-34 | 141 |
| MS.gene45495.t1 | MTR_4g021865 | 34.637 | 179 | 97 | 4 | 510 | 688 | 270 | 428 | 9.83e-25 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45495.t1 | AT5G02390 | 32.112 | 464 | 249 | 17 | 247 | 679 | 396 | 824 | 1.32e-50 | 189 |
| MS.gene45495.t1 | AT5G02390 | 32.112 | 464 | 249 | 17 | 247 | 679 | 396 | 824 | 1.32e-50 | 189 |
| MS.gene45495.t1 | AT1G07620 | 26.554 | 708 | 366 | 27 | 1 | 687 | 1 | 575 | 3.30e-39 | 153 |
| MS.gene45495.t1 | AT1G07620 | 25.952 | 709 | 343 | 27 | 1 | 687 | 1 | 549 | 4.36e-37 | 146 |
| MS.gene45495.t1 | AT1G07620 | 25.952 | 709 | 343 | 27 | 1 | 687 | 1 | 549 | 4.36e-37 | 146 |
| MS.gene45495.t1 | AT1G07620 | 25.952 | 709 | 343 | 27 | 1 | 687 | 1 | 549 | 4.36e-37 | 146 |
| MS.gene45495.t1 | AT5G02390 | 28.723 | 376 | 203 | 16 | 247 | 592 | 396 | 736 | 6.81e-22 | 101 |
Find 100 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCTTTGACATATTTGAAAT+TGG | 0.199181 | 2.1:+6783091 | None:intergenic |
| ACCTTGGAAGGCGCGGTTAA+AGG | 0.224919 | 2.1:+6784391 | None:intergenic |
| GGTCTAAGCAAACCGAAATT+TGG | 0.233160 | 2.1:-6784342 | MS.gene45495:CDS |
| AGTGATTTATCAATCTTTAA+AGG | 0.241353 | 2.1:+6783605 | None:intergenic |
| ACTATCTTGTTAAAGAAGTA+TGG | 0.258917 | 2.1:-6782794 | MS.gene45495:CDS |
| TTGTCTTGACAGCTAATTTC+AGG | 0.275591 | 2.1:+6783455 | None:intergenic |
| TTCTTCTAAAGCTGTGAATA+AGG | 0.278916 | 2.1:+6782992 | None:intergenic |
| TAGTTGAATGCAAAGGGTTT+TGG | 0.302998 | 2.1:+6782843 | None:intergenic |
| AATTGAAATGTCTCTGTTAA+GGG | 0.304642 | 2.1:+6784561 | None:intergenic |
| GGTCTACCGTGTATCGCATT+TGG | 0.311231 | 2.1:+6783030 | None:intergenic |
| TTAACAAGATAGTTCCCTTT+AGG | 0.319585 | 2.1:+6782804 | None:intergenic |
| CTTGGGAAAGTGCCAAATTT+CGG | 0.322890 | 2.1:+6784330 | None:intergenic |
| TAATTGAAATGTCTCTGTTA+AGG | 0.329455 | 2.1:+6784560 | None:intergenic |
| TTATGAAACGCCGAAGCTTT+CGG | 0.334227 | 2.1:-6784239 | MS.gene45495:CDS |
| TATTCTTGATTATCATCGTT+GGG | 0.343497 | 2.1:-6785189 | MS.gene45495:CDS |
| AAGCTTTCGGCGAGCGATCT+TGG | 0.344645 | 2.1:-6784226 | MS.gene45495:CDS |
| GTCTACCGTGTATCGCATTT+GGG | 0.345633 | 2.1:+6783031 | None:intergenic |
| CCACTTGATTCCATCCTTTG+TGG | 0.349946 | 2.1:+6784137 | None:intergenic |
| TAGGCTAGCTTCATGTTTGT+TGG | 0.375152 | 2.1:+6783919 | None:intergenic |
| AAAGCGAAATTGACAAAATC+AGG | 0.380909 | 2.1:-6784421 | MS.gene45495:CDS |
| AACTCAAACCAATGCCTAAA+GGG | 0.384062 | 2.1:-6782818 | MS.gene45495:CDS |
| GTGAATAAGGAAGGTTTCAT+TGG | 0.396105 | 2.1:+6783005 | None:intergenic |
| GAGATGATGTTCTTCGCATT+AGG | 0.406169 | 2.1:+6783900 | None:intergenic |
| ATGCCTAATCTTGAGTCCTT+AGG | 0.420369 | 2.1:-6783719 | MS.gene45495:CDS |
| AGATCGCTCGCCGAAAGCTT+CGG | 0.452317 | 2.1:+6784229 | None:intergenic |
| ATCATCGTTGGGGTGTCAAA+AGG | 0.453879 | 2.1:-6785178 | MS.gene45495:CDS |
| AGATAGTTCCCTTTAGGCAT+TGG | 0.454693 | 2.1:+6782810 | None:intergenic |
| AATATCAAATGCTAAAGGTC+AGG | 0.458115 | 2.1:-6784641 | MS.gene45495:CDS |
| AATCTTTAAACATACCTTGA+GGG | 0.459378 | 2.1:+6784780 | None:intergenic |
| ATATTCTTGATTATCATCGT+TGG | 0.463067 | 2.1:-6785190 | MS.gene45495:CDS |
| CGAAATTTGGCACTTTCCCA+AGG | 0.470153 | 2.1:-6784329 | MS.gene45495:CDS |
| CAGACATTAGATGATGTTGT+TGG | 0.474147 | 2.1:-6782729 | MS.gene45495:CDS |
| AATCCTAAGGACTCAAGATT+AGG | 0.474891 | 2.1:+6783716 | None:intergenic |
| AGATCTCTTTCTCGTTATTG+TGG | 0.476200 | 2.1:+6784023 | None:intergenic |
| ATAAGGAAGGTTTCATTGGC+TGG | 0.476766 | 2.1:+6783009 | None:intergenic |
| TCCTAGTTCTTTATCTGCTG+TGG | 0.479016 | 2.1:-6783522 | MS.gene45495:CDS |
| GTCAATTTCGCTTTGTTGTG+AGG | 0.479415 | 2.1:+6784430 | None:intergenic |
| AAAGTTGCTAGCTGGAACTC+AGG | 0.480623 | 2.1:-6784302 | MS.gene45495:CDS |
| AGTTTGTAGTTGAATGCAAA+GGG | 0.481518 | 2.1:+6782837 | None:intergenic |
| GAAGGCTTTGAAGAAATACT+TGG | 0.482916 | 2.1:+6784172 | None:intergenic |
| AAACTCAAACCAATGCCTAA+AGG | 0.488700 | 2.1:-6782819 | MS.gene45495:CDS |
| TGGTTGGATGAATCTTCAAC+AGG | 0.489385 | 2.1:-6782685 | MS.gene45495:CDS |
| GCTAAAGGTCAGGCTAGTAG+TGG | 0.495455 | 2.1:-6784631 | MS.gene45495:CDS |
| TCCTTTAACCGCGCCTTCCA+AGG | 0.498449 | 2.1:-6784392 | MS.gene45495:CDS |
| TAAATTTGTTACCTTCTGCT+TGG | 0.498904 | 2.1:+6783423 | None:intergenic |
| ACATTAGCTCTAGTACCTTC+CGG | 0.504712 | 2.1:-6784363 | MS.gene45495:CDS |
| TCTAAAGCTGTGAATAAGGA+AGG | 0.504713 | 2.1:+6782996 | None:intergenic |
| TTGTGGCTTACTCCTTCAGA+AGG | 0.507237 | 2.1:+6784154 | None:intergenic |
| AACAAATGAAGAAAATAATA+CGG | 0.513989 | 2.1:-6783669 | MS.gene45495:CDS |
| GATGGCAAGACAACAGATCA+AGG | 0.516248 | 2.1:-6784586 | MS.gene45495:CDS |
| AAATTTCGGTTTGCTTAGAC+CGG | 0.520967 | 2.1:+6784344 | None:intergenic |
| CAAATTCAAGAAGTTAATCA+AGG | 0.522924 | 2.1:-6785233 | MS.gene45495:CDS |
| GAAGTTGATGAAACAGTTGA+AGG | 0.525274 | 2.1:-6783563 | MS.gene45495:CDS |
| GCACTTCATCAGAAGAAAGA+TGG | 0.526893 | 2.1:-6784604 | MS.gene45495:CDS |
| AGCTGTCAAGACAATACAAT+CGG | 0.528083 | 2.1:-6783446 | MS.gene45495:CDS |
| AAGGAGTAAGCCACAAAGGA+TGG | 0.528298 | 2.1:-6784147 | MS.gene45495:CDS |
| GATGAATCTTCAACAGGAAG+AGG | 0.528776 | 2.1:-6782679 | MS.gene45495:CDS |
| ATGATAAGATTCACAAGAGT+AGG | 0.532170 | 2.1:-6783775 | MS.gene45495:CDS |
| ATTTCTTCAAAGCCTTCTGA+AGG | 0.533424 | 2.1:-6784166 | MS.gene45495:CDS |
| TCATCGTTGGGGTGTCAAAA+GGG | 0.534999 | 2.1:-6785177 | MS.gene45495:CDS |
| AGAGAAATATCAAATGCTAA+AGG | 0.539737 | 2.1:-6784646 | MS.gene45495:CDS |
| AAGTTAATCAAGGATGTATG+TGG | 0.539941 | 2.1:-6785223 | MS.gene45495:CDS |
| CTATCTTGTTAAAGAAGTAT+GGG | 0.540514 | 2.1:-6782793 | MS.gene45495:CDS |
| TTCGGTTTGCTTAGACCGGA+AGG | 0.541362 | 2.1:+6784348 | None:intergenic |
| ATCATCTCTTAATGAATCGA+TGG | 0.543352 | 2.1:-6783885 | MS.gene45495:CDS |
| GAAGATAAAACATGCACTTG+TGG | 0.545595 | 2.1:-6784086 | MS.gene45495:CDS |
| AAAACACTTGATTAGTTCAG+AGG | 0.547935 | 2.1:-6785267 | MS.gene45495:CDS |
| TCCACAGCAGATAAAGAACT+AGG | 0.548583 | 2.1:+6783521 | None:intergenic |
| TTTCTAAGAGATATAGACAT+TGG | 0.556008 | 2.1:-6784475 | MS.gene45495:CDS |
| TCTAATGTCTGATCTAACTC+TGG | 0.557841 | 2.1:+6782741 | None:intergenic |
| ATTCTTGATTATCATCGTTG+GGG | 0.567532 | 2.1:-6785188 | MS.gene45495:CDS |
| CTAAGAGATATAGACATTGG+TGG | 0.569025 | 2.1:-6784472 | MS.gene45495:CDS |
| GCACGAGCAAAGAGATCAAG+TGG | 0.575717 | 2.1:-6783835 | MS.gene45495:CDS |
| AGTTAATCAAGGATGTATGT+GGG | 0.578331 | 2.1:-6785222 | MS.gene45495:CDS |
| AATACAATCGGCCAAGCAGA+AGG | 0.578706 | 2.1:-6783434 | MS.gene45495:intron |
| ATCTCACAAAGCTTAGATGT+TGG | 0.579095 | 2.1:-6784004 | MS.gene45495:CDS |
| GAAATTTGGCACTTTCCCAA+GGG | 0.581947 | 2.1:-6784328 | MS.gene45495:CDS |
| GAGTTTGTAGTTGAATGCAA+AGG | 0.582588 | 2.1:+6782836 | None:intergenic |
| GTGTGTAGCACTTGAACTTG+AGG | 0.590237 | 2.1:-6782655 | MS.gene45495:CDS |
| ATTTGACGAAAAGAAGTGGT+TGG | 0.594040 | 2.1:-6782701 | MS.gene45495:CDS |
| GATGAAACAGTTGAAGGGAG+TGG | 0.594980 | 2.1:-6783557 | MS.gene45495:CDS |
| CATGACTACTAATCTTAGCA+AGG | 0.600526 | 2.1:-6783492 | MS.gene45495:CDS |
| AAACAATGATGATGTTATGG+AGG | 0.602597 | 2.1:-6784530 | MS.gene45495:CDS |
| CTAAAGGTCAGGCTAGTAGT+GGG | 0.612454 | 2.1:-6784630 | MS.gene45495:CDS |
| AAGTTGATGAAACAGTTGAA+GGG | 0.625255 | 2.1:-6783562 | MS.gene45495:CDS |
| TCTTGGAATCGATAGTGTCA+TGG | 0.628298 | 2.1:-6784209 | MS.gene45495:CDS |
| AAAGAGTAAGAGCTTGAGTG+AGG | 0.644516 | 2.1:-6783963 | MS.gene45495:CDS |
| TGTTATGGAGGTAATTAGTG+TGG | 0.644603 | 2.1:-6784518 | MS.gene45495:CDS |
| TACAGATGCAGAATCCCTCA+AGG | 0.647198 | 2.1:-6784794 | MS.gene45495:intron |
| GTTAATCAAGGATGTATGTG+GGG | 0.647876 | 2.1:-6785221 | MS.gene45495:CDS |
| ATCATGTAGAATGAATCCTA+AGG | 0.650965 | 2.1:+6783703 | None:intergenic |
| CGTGATTTGACGAAAAGAAG+TGG | 0.655367 | 2.1:-6782705 | MS.gene45495:CDS |
| GCAGACCCAAATGCGATACA+CGG | 0.657845 | 2.1:-6783036 | MS.gene45495:CDS |
| CCACAAAGGATGGAATCAAG+TGG | 0.658566 | 2.1:-6784137 | MS.gene45495:CDS |
| TCTGAAGGAGTAAGCCACAA+AGG | 0.665084 | 2.1:-6784151 | MS.gene45495:CDS |
| AAATTTGGCACTTTCCCAAG+GGG | 0.665909 | 2.1:-6784327 | MS.gene45495:CDS |
| AATTTGGCACTTTCCCAAGG+GGG | 0.673506 | 2.1:-6784326 | MS.gene45495:CDS |
| AAATTGCTTCTAGAAAACAT+AGG | 0.675542 | 2.1:+6783746 | None:intergenic |
| AAATGAAGAAAATAATACGG+TGG | 0.680803 | 2.1:-6783666 | MS.gene45495:CDS |
| GACTACTAATCTTAGCAAGG+AGG | 0.711361 | 2.1:-6783489 | MS.gene45495:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACATGATAAAAATATATATA+AGG | - | chr2.1:6782877-6782896 | MS.gene45495:CDS | 10.0% |
| !! | ATGATAAAAATATATATAAG+GGG | - | chr2.1:6782879-6782898 | MS.gene45495:CDS | 10.0% |
| !! | CATGATAAAAATATATATAA+GGG | - | chr2.1:6782878-6782897 | MS.gene45495:CDS | 10.0% |
| !! | AACAAATGAAGAAAATAATA+CGG | - | chr2.1:6784214-6784233 | MS.gene45495:CDS | 15.0% |
| !! | TTCTACTTTAAATAATTCTA+AGG | + | chr2.1:6782981-6783000 | None:intergenic | 15.0% |
| !!! | AATTCTTTATTTATTTGTGA+CGG | + | chr2.1:6783150-6783169 | None:intergenic | 15.0% |
| !!! | AGATTCATGATTATATTTTA+TGG | - | chr2.1:6783121-6783140 | MS.gene45495:CDS | 15.0% |
| !!! | ATCATTACTAATCTTTTTTT+TGG | - | chr2.1:6784646-6784665 | MS.gene45495:CDS | 15.0% |
| !!! | TTTAAATAATTCTAAGGTAT+AGG | + | chr2.1:6782975-6782994 | None:intergenic | 15.0% |
| !!! | TTTTAATGATTATAAAGCAA+TGG | + | chr2.1:6782851-6782870 | None:intergenic | 15.0% |
| !! | AGTGATTTATCAATCTTTAA+AGG | + | chr2.1:6784281-6784300 | None:intergenic | 20.0% |
| ! | AAATGAAGAAAATAATACGG+TGG | - | chr2.1:6784217-6784236 | MS.gene45495:CDS | 25.0% |
| ! | AATCTTTAAACATACCTTGA+GGG | + | chr2.1:6783106-6783125 | None:intergenic | 25.0% |
| ! | AATTGAAATGTCTCTGTTAA+GGG | + | chr2.1:6783325-6783344 | None:intergenic | 25.0% |
| ! | ACTATCTTGTTAAAGAAGTA+TGG | - | chr2.1:6785089-6785108 | MS.gene45495:intron | 25.0% |
| ! | AGAGAAATATCAAATGCTAA+AGG | - | chr2.1:6783237-6783256 | MS.gene45495:intron | 25.0% |
| ! | ATAAAAGAAGAAACATAGTG+TGG | + | chr2.1:6782780-6782799 | None:intergenic | 25.0% |
| ! | ATATTCTTGATTATCATCGT+TGG | - | chr2.1:6782693-6782712 | MS.gene45495:CDS | 25.0% |
| ! | CAAATTCAAGAAGTTAATCA+AGG | - | chr2.1:6782650-6782669 | MS.gene45495:CDS | 25.0% |
| ! | TAATTGAAATGTCTCTGTTA+AGG | + | chr2.1:6783326-6783345 | None:intergenic | 25.0% |
| ! | TATTCTTGATTATCATCGTT+GGG | - | chr2.1:6782694-6782713 | MS.gene45495:CDS | 25.0% |
| !! | AAAGACATTCTTGAATTTTC+GGG | - | chr2.1:6784809-6784828 | MS.gene45495:CDS | 25.0% |
| !! | AAATTGCTTCTAGAAAACAT+AGG | + | chr2.1:6784140-6784159 | None:intergenic | 25.0% |
| !! | CAAAAACAATGATGATGTTA+TGG | - | chr2.1:6783350-6783369 | MS.gene45495:intron | 25.0% |
| !! | CAAAGACATTCTTGAATTTT+CGG | - | chr2.1:6784808-6784827 | MS.gene45495:CDS | 25.0% |
| !! | CTATCTTGTTAAAGAAGTAT+GGG | - | chr2.1:6785090-6785109 | MS.gene45495:intron | 25.0% |
| !! | GTCTTTGACATATTTGAAAT+TGG | + | chr2.1:6784795-6784814 | None:intergenic | 25.0% |
| !! | TCTTTTTCTTATCTGCATAT+AGG | + | chr2.1:6783041-6783060 | None:intergenic | 25.0% |
| !! | TTTCTAAGAGATATAGACAT+TGG | - | chr2.1:6783408-6783427 | MS.gene45495:intron | 25.0% |
| !!! | ATCACTTGAACATTTTAAAG+AGG | - | chr2.1:6784295-6784314 | MS.gene45495:CDS | 25.0% |
| !!! | TTTTTGGCTATATATATACC+AGG | - | chr2.1:6784662-6784681 | MS.gene45495:intron | 25.0% |
| AAAGCGAAATTGACAAAATC+AGG | - | chr2.1:6783462-6783481 | MS.gene45495:CDS | 30.0% | |
| AAGTTAATCAAGGATGTATG+TGG | - | chr2.1:6782660-6782679 | MS.gene45495:CDS | 30.0% | |
| AATATCAAATGCTAAAGGTC+AGG | - | chr2.1:6783242-6783261 | MS.gene45495:intron | 30.0% | |
| ACTAACGTAACATTTCTTTG+AGG | - | chr2.1:6784499-6784518 | MS.gene45495:CDS | 30.0% | |
| AGTTAATCAAGGATGTATGT+GGG | - | chr2.1:6782661-6782680 | MS.gene45495:CDS | 30.0% | |
| AGTTTGTAGTTGAATGCAAA+GGG | + | chr2.1:6785049-6785068 | None:intergenic | 30.0% | |
| ATCATCTCTTAATGAATCGA+TGG | - | chr2.1:6783998-6784017 | MS.gene45495:CDS | 30.0% | |
| ATCATGTAGAATGAATCCTA+AGG | + | chr2.1:6784183-6784202 | None:intergenic | 30.0% | |
| ATGATAAGATTCACAAGAGT+AGG | - | chr2.1:6784108-6784127 | MS.gene45495:CDS | 30.0% | |
| ATTCTTGATTATCATCGTTG+GGG | - | chr2.1:6782695-6782714 | MS.gene45495:CDS | 30.0% | |
| CAGCTGTTTATATACACAAA+AGG | + | chr2.1:6782930-6782949 | None:intergenic | 30.0% | |
| GAATCTTTAAACATACCTTG+AGG | + | chr2.1:6783107-6783126 | None:intergenic | 30.0% | |
| TGACCAAGTTAAAAAGAAGT+TGG | + | chr2.1:6784976-6784995 | None:intergenic | 30.0% | |
| TTAACAAGATAGTTCCCTTT+AGG | + | chr2.1:6785082-6785101 | None:intergenic | 30.0% | |
| ! | AAAACACTTGATTAGTTCAG+AGG | - | chr2.1:6782616-6782635 | MS.gene45495:CDS | 30.0% |
| ! | AAACAATGATGATGTTATGG+AGG | - | chr2.1:6783353-6783372 | MS.gene45495:intron | 30.0% |
| ! | CATCTGTAACAACATTTTGT+TGG | + | chr2.1:6783077-6783096 | None:intergenic | 30.0% |
| !! | AAGTTGATGAAACAGTTGAA+GGG | - | chr2.1:6784321-6784340 | MS.gene45495:CDS | 30.0% |
| !! | TAAATTTGTTACCTTCTGCT+TGG | + | chr2.1:6784463-6784482 | None:intergenic | 30.0% |
| !! | TCACCAACTTCTTTTTAACT+TGG | - | chr2.1:6784970-6784989 | MS.gene45495:intron | 30.0% |
| !! | TTCTTCTAAAGCTGTGAATA+AGG | + | chr2.1:6784894-6784913 | None:intergenic | 30.0% |
| !!! | AAACTTGATCCAAGCTTTTT+TGG | + | chr2.1:6783609-6783628 | None:intergenic | 30.0% |
| !!! | AAGGGTTTTGGAAAATAAGT+TGG | + | chr2.1:6785031-6785050 | None:intergenic | 30.0% |
| !!! | ATTTTGTTGGTCTTGCAAAA+TGG | + | chr2.1:6783064-6783083 | None:intergenic | 30.0% |
| AAACTCAAACCAATGCCTAA+AGG | - | chr2.1:6785064-6785083 | MS.gene45495:intron | 35.0% | |
| AACTCAAACCAATGCCTAAA+GGG | - | chr2.1:6785065-6785084 | MS.gene45495:intron | 35.0% | |
| AATCCTAAGGACTCAAGATT+AGG | + | chr2.1:6784170-6784189 | None:intergenic | 35.0% | |
| ACAAAAGGTTCTTGATGAGA+TGG | + | chr2.1:6782915-6782934 | None:intergenic | 35.0% | |
| AGATCTCTTTCTCGTTATTG+TGG | + | chr2.1:6783863-6783882 | None:intergenic | 35.0% | |
| AGCTGTCAAGACAATACAAT+CGG | - | chr2.1:6784437-6784456 | MS.gene45495:CDS | 35.0% | |
| ATCTCACAAAGCTTAGATGT+TGG | - | chr2.1:6783879-6783898 | MS.gene45495:CDS | 35.0% | |
| ATTTCTTCAAAGCCTTCTGA+AGG | - | chr2.1:6783717-6783736 | MS.gene45495:CDS | 35.0% | |
| ATTTGACGAAAAGAAGTGGT+TGG | - | chr2.1:6785182-6785201 | MS.gene45495:CDS | 35.0% | |
| CAGACATTAGATGATGTTGT+TGG | - | chr2.1:6785154-6785173 | MS.gene45495:CDS | 35.0% | |
| CATGACTACTAATCTTAGCA+AGG | - | chr2.1:6784391-6784410 | MS.gene45495:CDS | 35.0% | |
| CTAAGAGATATAGACATTGG+TGG | - | chr2.1:6783411-6783430 | MS.gene45495:intron | 35.0% | |
| CTTGTGGAACTCAAAAAAAG+TGG | - | chr2.1:6783813-6783832 | MS.gene45495:CDS | 35.0% | |
| GAAGATAAAACATGCACTTG+TGG | - | chr2.1:6783797-6783816 | MS.gene45495:CDS | 35.0% | |
| GAGTTTGTAGTTGAATGCAA+AGG | + | chr2.1:6785050-6785069 | None:intergenic | 35.0% | |
| GGCTATATATATACCAGGAA+AGG | - | chr2.1:6784667-6784686 | MS.gene45495:intron | 35.0% | |
| GGTATGAAATTGCTTACATC+TGG | + | chr2.1:6782759-6782778 | None:intergenic | 35.0% | |
| GTGAATAAGGAAGGTTTCAT+TGG | + | chr2.1:6784881-6784900 | None:intergenic | 35.0% | |
| GTTAATCAAGGATGTATGTG+GGG | - | chr2.1:6782662-6782681 | MS.gene45495:CDS | 35.0% | |
| TCTAATGTCTGATCTAACTC+TGG | + | chr2.1:6785145-6785164 | None:intergenic | 35.0% | |
| TGTTATGGAGGTAATTAGTG+TGG | - | chr2.1:6783365-6783384 | MS.gene45495:intron | 35.0% | |
| TTGTCTTGACAGCTAATTTC+AGG | + | chr2.1:6784431-6784450 | None:intergenic | 35.0% | |
| ! | AAATTTCGGTTTGCTTAGAC+CGG | + | chr2.1:6783542-6783561 | None:intergenic | 35.0% |
| ! | AGAGCTAATGTTTTTCACCT+TGG | + | chr2.1:6783511-6783530 | None:intergenic | 35.0% |
| ! | CTAATGTTTTTCACCTTGGA+AGG | + | chr2.1:6783507-6783526 | None:intergenic | 35.0% |
| ! | TAGTTGAATGCAAAGGGTTT+TGG | + | chr2.1:6785043-6785062 | None:intergenic | 35.0% |
| ! | TCTAAAGCTGTGAATAAGGA+AGG | + | chr2.1:6784890-6784909 | None:intergenic | 35.0% |
| !! | GAAGGCTTTGAAGAAATACT+TGG | + | chr2.1:6783714-6783733 | None:intergenic | 35.0% |
| !! | GAAGTTGATGAAACAGTTGA+AGG | - | chr2.1:6784320-6784339 | MS.gene45495:CDS | 35.0% |
| !!! | CTTGAATTTTCGGGTTTCAT+GGG | - | chr2.1:6784818-6784837 | MS.gene45495:CDS | 35.0% |
| !!! | TCTTGAATTTTCGGGTTTCA+TGG | - | chr2.1:6784817-6784836 | MS.gene45495:CDS | 35.0% |
| AAAGAGTAAGAGCTTGAGTG+AGG | - | chr2.1:6783920-6783939 | MS.gene45495:CDS | 40.0% | |
| AAATTTGGCACTTTCCCAAG+GGG | - | chr2.1:6783556-6783575 | MS.gene45495:CDS | 40.0% | |
| AGATAGTTCCCTTTAGGCAT+TGG | + | chr2.1:6785076-6785095 | None:intergenic | 40.0% | |
| ATAAGGAAGGTTTCATTGGC+TGG | + | chr2.1:6784877-6784896 | None:intergenic | 40.0% | |
| ATGCCTAATCTTGAGTCCTT+AGG | - | chr2.1:6784164-6784183 | MS.gene45495:CDS | 40.0% | |
| CGTGATTTGACGAAAAGAAG+TGG | - | chr2.1:6785178-6785197 | MS.gene45495:CDS | 40.0% | |
| GAAATTTGGCACTTTCCCAA+GGG | - | chr2.1:6783555-6783574 | MS.gene45495:CDS | 40.0% | |
| GACTACTAATCTTAGCAAGG+AGG | - | chr2.1:6784394-6784413 | MS.gene45495:CDS | 40.0% | |
| GAGATGATGTTCTTCGCATT+AGG | + | chr2.1:6783986-6784005 | None:intergenic | 40.0% | |
| GATGAATCTTCAACAGGAAG+AGG | - | chr2.1:6785204-6785223 | MS.gene45495:CDS | 40.0% | |
| GCACTTCATCAGAAGAAAGA+TGG | - | chr2.1:6783279-6783298 | MS.gene45495:intron | 40.0% | |
| GGTCTAAGCAAACCGAAATT+TGG | - | chr2.1:6783541-6783560 | MS.gene45495:CDS | 40.0% | |
| TCCACAGCAGATAAAGAACT+AGG | + | chr2.1:6784365-6784384 | None:intergenic | 40.0% | |
| TCTTGGAATCGATAGTGTCA+TGG | - | chr2.1:6783674-6783693 | MS.gene45495:CDS | 40.0% | |
| TGGTTGGATGAATCTTCAAC+AGG | - | chr2.1:6785198-6785217 | MS.gene45495:CDS | 40.0% | |
| TTATGAAACGCCGAAGCTTT+CGG | - | chr2.1:6783644-6783663 | MS.gene45495:CDS | 40.0% | |
| ! | GTCAATTTCGCTTTGTTGTG+AGG | + | chr2.1:6783456-6783475 | None:intergenic | 40.0% |
| ! | TCCTAGTTCTTTATCTGCTG+TGG | - | chr2.1:6784361-6784380 | MS.gene45495:CDS | 40.0% |
| !! | ACATTAGCTCTAGTACCTTC+CGG | - | chr2.1:6783520-6783539 | MS.gene45495:CDS | 40.0% |
| !! | CTTGGGAAAGTGCCAAATTT+CGG | + | chr2.1:6783556-6783575 | None:intergenic | 40.0% |
| !! | TAGGCTAGCTTCATGTTTGT+TGG | + | chr2.1:6783967-6783986 | None:intergenic | 40.0% |
| AAAGTTGCTAGCTGGAACTC+AGG | - | chr2.1:6783581-6783600 | MS.gene45495:CDS | 45.0% | |
| AAGGAGTAAGCCACAAAGGA+TGG | - | chr2.1:6783736-6783755 | MS.gene45495:CDS | 45.0% | |
| AATACAATCGGCCAAGCAGA+AGG | - | chr2.1:6784449-6784468 | MS.gene45495:CDS | 45.0% | |
| AATTTGGCACTTTCCCAAGG+GGG | - | chr2.1:6783557-6783576 | MS.gene45495:CDS | 45.0% | |
| ACTCAGGCTCCAAAAAAGCT+TGG | - | chr2.1:6783597-6783616 | MS.gene45495:CDS | 45.0% | |
| CCACAAAGGATGGAATCAAG+TGG | - | chr2.1:6783746-6783765 | MS.gene45495:CDS | 45.0% | |
| CCACTTGATTCCATCCTTTG+TGG | + | chr2.1:6783749-6783768 | None:intergenic | 45.0% | |
| CGAAATTTGGCACTTTCCCA+AGG | - | chr2.1:6783554-6783573 | MS.gene45495:CDS | 45.0% | |
| CTAAAGGTCAGGCTAGTAGT+GGG | - | chr2.1:6783253-6783272 | MS.gene45495:intron | 45.0% | |
| GATGAAACAGTTGAAGGGAG+TGG | - | chr2.1:6784326-6784345 | MS.gene45495:CDS | 45.0% | |
| GATGGCAAGACAACAGATCA+AGG | - | chr2.1:6783297-6783316 | MS.gene45495:intron | 45.0% | |
| GTCTACCGTGTATCGCATTT+GGG | + | chr2.1:6784855-6784874 | None:intergenic | 45.0% | |
| GTGTGTAGCACTTGAACTTG+AGG | - | chr2.1:6785228-6785247 | MS.gene45495:CDS | 45.0% | |
| TACAGATGCAGAATCCCTCA+AGG | - | chr2.1:6783089-6783108 | MS.gene45495:CDS | 45.0% | |
| TCTGAAGGAGTAAGCCACAA+AGG | - | chr2.1:6783732-6783751 | MS.gene45495:CDS | 45.0% | |
| TTGTGGCTTACTCCTTCAGA+AGG | + | chr2.1:6783732-6783751 | None:intergenic | 45.0% | |
| ! | ATCATCGTTGGGGTGTCAAA+AGG | - | chr2.1:6782705-6782724 | MS.gene45495:CDS | 45.0% |
| ! | TCATCGTTGGGGTGTCAAAA+GGG | - | chr2.1:6782706-6782725 | MS.gene45495:CDS | 45.0% |
| !! | AATATATAAATATAAATATC+AGG | - | chr2.1:6783203-6783222 | MS.gene45495:intron | 5.0% |
| AAGGGGGAAAAGTTGCTAGC+TGG | - | chr2.1:6783573-6783592 | MS.gene45495:CDS | 50.0% | |
| CGCGTATTCGATTCCTTTCC+TGG | + | chr2.1:6784683-6784702 | None:intergenic | 50.0% | |
| GCACGAGCAAAGAGATCAAG+TGG | - | chr2.1:6784048-6784067 | MS.gene45495:CDS | 50.0% | |
| GCAGACCCAAATGCGATACA+CGG | - | chr2.1:6784847-6784866 | MS.gene45495:intron | 50.0% | |
| GCTAAAGGTCAGGCTAGTAG+TGG | - | chr2.1:6783252-6783271 | MS.gene45495:intron | 50.0% | |
| GGTCTACCGTGTATCGCATT+TGG | + | chr2.1:6784856-6784875 | None:intergenic | 50.0% | |
| ! | AGCTAGCAACTTTTCCCCCT+TGG | + | chr2.1:6783574-6783593 | None:intergenic | 50.0% |
| ! | GCTAGCAACTTTTCCCCCTT+GGG | + | chr2.1:6783573-6783592 | None:intergenic | 50.0% |
| ! | GTTTTTCACCTTGGAAGGCG+CGG | + | chr2.1:6783502-6783521 | None:intergenic | 50.0% |
| ! | TTCGGTTTGCTTAGACCGGA+AGG | + | chr2.1:6783538-6783557 | None:intergenic | 50.0% |
| AAGCTTTCGGCGAGCGATCT+TGG | - | chr2.1:6783657-6783676 | MS.gene45495:CDS | 55.0% | |
| AGATCGCTCGCCGAAAGCTT+CGG | + | chr2.1:6783657-6783676 | None:intergenic | 55.0% | |
| TCCTTTAACCGCGCCTTCCA+AGG | - | chr2.1:6783491-6783510 | MS.gene45495:CDS | 55.0% | |
| ! | ACCTTGGAAGGCGCGGTTAA+AGG | + | chr2.1:6783495-6783514 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.1 | gene | 6782611 | 6785294 | 6782611 | ID=MS.gene45495 |
| chr2.1 | mRNA | 6782611 | 6785294 | 6782611 | ID=MS.gene45495.t1;Parent=MS.gene45495 |
| chr2.1 | exon | 6785144 | 6785294 | 6785144 | ID=MS.gene45495.t1.exon1;Parent=MS.gene45495.t1 |
| chr2.1 | CDS | 6785144 | 6785294 | 6785144 | ID=cds.MS.gene45495.t1;Parent=MS.gene45495.t1 |
| chr2.1 | exon | 6784795 | 6784856 | 6784795 | ID=MS.gene45495.t1.exon2;Parent=MS.gene45495.t1 |
| chr2.1 | CDS | 6784795 | 6784856 | 6784795 | ID=cds.MS.gene45495.t1;Parent=MS.gene45495.t1 |
| chr2.1 | exon | 6783435 | 6784680 | 6783435 | ID=MS.gene45495.t1.exon3;Parent=MS.gene45495.t1 |
| chr2.1 | CDS | 6783435 | 6784680 | 6783435 | ID=cds.MS.gene45495.t1;Parent=MS.gene45495.t1 |
| chr2.1 | exon | 6782611 | 6783221 | 6782611 | ID=MS.gene45495.t1.exon4;Parent=MS.gene45495.t1 |
| chr2.1 | CDS | 6782611 | 6783221 | 6782611 | ID=cds.MS.gene45495.t1;Parent=MS.gene45495.t1 |
| Gene Sequence |
| Protein sequence |
