AlfalfaGEDB | MS.gene45557

M. sativa cultivar XinJiangDaYe / MS.gene45557

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0008270 GO:0043167 GO:0043169 GO:0046872 GO:0046914 GO:0097159 GO:1901363
PFAM: PF01428.19 PF01754.19

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45557.t1	XP_024632562.1	97.7	172	4	0	1	172	1	172	1.60E-90	342

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45557.t1	A2YEZ6	70.1	174	47	3	1	172	1	171	2.1e-64	246.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45557.t1	B7FGP6	97.7	172	4	0	1	172	1	172	1.1e-90	342.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050623	MS.gene45557	0.845175	4.79E-59	-1.69E-46
MS.gene051662	MS.gene45557	-0.822794	1.96E-53	-1.69E-46
MS.gene052048	MS.gene45557	0.99031	4.97E-182	-1.69E-46
MS.gene054942	MS.gene45557	-0.815081	1.11E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene050335	MS.gene45557	PPI
MS.gene45557	MS.gene24724	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45557.t1	MTR_2g098160	97.674	172	4	0	1	172	1	172	2.81e-124	347
MS.gene45557.t1	MTR_0249s0070	61.765	170	61	2	3	172	4	169	2.54e-76	225
MS.gene45557.t1	MTR_0249s0070	61.765	170	61	2	3	172	12	177	2.72e-76	226
MS.gene45557.t1	MTR_4g065570	77.622	143	25	2	31	172	1	137	1.36e-75	222
MS.gene45557.t1	MTR_7g092400	63.743	171	59	3	3	172	92	260	1.55e-75	227
MS.gene45557.t1	MTR_7g104320	46.061	165	79	3	12	172	10	168	1.59e-45	147
MS.gene45557.t1	MTR_4g053440	44.643	168	86	4	8	172	7	170	1.89e-42	139
MS.gene45557.t1	MTR_2g086190	44.304	158	71	5	15	172	10	150	4.60e-41	135
MS.gene45557.t1	MTR_1g060380	44.785	163	74	4	11	172	9	156	1.92e-37	126
MS.gene45557.t1	MTR_3g028010	37.821	156	77	2	17	172	28	163	7.51e-29	104

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45557.t1	AT1G51200	60.452	177	61	4	1	172	1	173	1.16e-62	191
MS.gene45557.t1	AT1G51200	60.452	177	61	4	1	172	1	173	1.16e-62	191
MS.gene45557.t1	AT1G51200	60.452	177	61	4	1	172	1	173	1.16e-62	191
MS.gene45557.t1	AT1G51200	60.452	177	61	4	1	172	1	173	1.16e-62	191
MS.gene45557.t1	AT2G36320	47.879	165	71	4	11	172	9	161	4.94e-46	148
MS.gene45557.t1	AT4G12040	42.683	164	90	2	12	172	13	175	1.71e-45	147
MS.gene45557.t1	AT4G12040	42.683	164	90	2	12	172	13	175	1.71e-45	147
MS.gene45557.t1	AT2G27580	40.123	162	85	2	15	172	10	163	3.76e-42	139
MS.gene45557.t1	AT2G27580	40.123	162	85	2	15	172	10	163	3.76e-42	139
MS.gene45557.t1	AT1G12440	40.123	162	92	2	11	172	12	168	6.01e-40	133

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Find 48 sgRNAs with CRISPR-Local

Find 51 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCAAACCCTGTTGTGA+AGG	0.563268	2.1:-6132892	MS.gene45557:CDS
AACTAACGGTTCTGCAGAGA+TGG	0.516940	2.1:+6133106	None:intergenic
AAGATGGACCATGATCAGAC+TGG	0.612119	2.1:-6133368	MS.gene45557:CDS
AATAAGCGGGTTGGTTTGAC+AGG	0.421004	2.1:-6133017	MS.gene45557:CDS
AATGGAAGATGCTGCAAGTG+TGG	0.642024	2.1:+6133223	None:intergenic
ACACTTGCAGCATCTTCCAT+TGG	0.488087	2.1:-6133221	MS.gene45557:CDS
ACAGGATTTAATTGTCGATG+TGG	0.589267	2.1:-6132999	MS.gene45557:CDS
ACCTGCTATCACTGCCAGCG+TGG	0.686751	2.1:-6133159	MS.gene45557:CDS
AGCAACTGCAATAAGCGGGT+TGG	0.585228	2.1:-6133026	MS.gene45557:CDS
AGCCGAAGGATGGTCCTAAG+CGG	0.700565	2.1:-6133052	MS.gene45557:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACAGGATTTAATTGTCGATG+TGG	-	chr2.1:6133235-6133254	MS.gene45557:CDS	35.0%
AAAAGCAAACCCTGTTGTGA+AGG	-	chr2.1:6133342-6133361	MS.gene45557:CDS	40.0%
ATGTTGTGCATCAACAACTG+TGG	-	chr2.1:6132914-6132933	MS.gene45557:CDS	40.0%
CAAAGACATGATGCTGAAAC+AGG	-	chr2.1:6132982-6133001	MS.gene45557:CDS	40.0%
CAGTTGTTGATGCACAACAT+AGG	+	chr2.1:6132914-6132933	None:intergenic	40.0%
CCATTGGGAACATCATGAAT+GGG	-	chr2.1:6133029-6133048	MS.gene45557:CDS	40.0%
GTTTCAGCATCATGTCTTTG+TGG	+	chr2.1:6132982-6133001	None:intergenic	40.0%
TCCATTGGGAACATCATGAA+TGG	-	chr2.1:6133028-6133047	MS.gene45557:CDS	40.0%
AACTAACGGTTCTGCAGAGA+TGG	+	chr2.1:6133131-6133150	None:intergenic	45.0%
AATGGAAGATGCTGCAAGTG+TGG	+	chr2.1:6133014-6133033	None:intergenic	45.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	6132869	6133387	6132869	ID=MS.gene45557
chr2.1	mRNA	6132869	6133387	6132869	ID=MS.gene45557.t1;Parent=MS.gene45557
chr2.1	exon	6132869	6133387	6132869	ID=MS.gene45557.t1.exon1;Parent=MS.gene45557.t1
chr2.1	CDS	6132869	6133387	6132869	ID=cds.MS.gene45557.t1;Parent=MS.gene45557.t1

Gene Sequence

>MS.gene45557

ATGGACCATGATCAGACTGGATGTGAAGCTGCCCCAGAGGGTCCTATGTTGTGCATCAACAACTGTGGATTTTTCGGAAGCGCAGCTACCATGAACATGTGTTCCAAGTGCCACAAAGACATGATGCTGAAACAGGAGCAGGCCACACTTGCAGCATCTTCCATTGGGAACATCATGAATGGGTCATCCAGCAGCAGTGTAATTGAACCTGCTATCACTGCCAGCGTGGAGATCTCAGTCGATCAAGTGGAGCCCAAAACCATCTCTGCAGAACCGTTAGTTGCTTCCGGCTCAGAGGAGAGTTTGGAGAAGAAGCCGAAGGATGGTCCTAAGCGGTGCAGCAACTGCAATAAGCGGGTTGGTTTGACAGGATTTAATTGTCGATGTGGTAACCTTTACTGTGCTGTACATCGCTACTCAGACAAGCATGACTGCCCATTTGATTACCGCACTGCTGGACGTGATGCAATAGCAAAAGCAAACCCTGTTGTGAAGGCTGAAAAGCTTGACAAGATCTAG

Protein sequence

>MS.gene45557.t1

MDHDQTGCEAAPEGPMLCINNCGFFGSAATMNMCSKCHKDMMLKQEQATLAASSIGNIMNGSSSSSVIEPAITASVEISVDQVEPKTISAEPLVASGSEESLEKKPKDGPKRCSNCNKRVGLTGFNCRCGNLYCAVHRYSDKHDCPFDYRTAGRDAIAKANPVVKAEKLDKI