Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45677.t1 | XP_003606904.1 | 98.4 | 311 | 4 | 1 | 1 | 310 | 1 | 311 | 1.70E-159 | 572 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45677.t1 | Q8GUH2 | 43.2 | 294 | 136 | 10 | 36 | 308 | 42 | 325 | 5.3e-37 | 156.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45677.t1 | G7JG61 | 98.4 | 311 | 4 | 1 | 1 | 310 | 1 | 311 | 1.2e-159 | 572.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053082 | MS.gene45677 | 0.802267 | 6.08E-49 | -1.69E-46 |
| MS.gene054985 | MS.gene45677 | 0.807467 | 4.98E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene79923 | MS.gene45677 | PPI |
| MS.gene45677 | MS.gene019686 | PPI |
| MS.gene92099 | MS.gene45677 | PPI |
| MS.gene45677 | MS.gene000647 | PPI |
| MS.gene45677 | MS.gene056832 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45677.t1 | MTR_4g070020 | 98.392 | 311 | 4 | 1 | 1 | 310 | 1 | 311 | 0.0 | 629 |
| MS.gene45677.t1 | MTR_4g070020 | 97.881 | 236 | 4 | 1 | 1 | 235 | 1 | 236 | 6.67e-170 | 471 |
| MS.gene45677.t1 | MTR_1g022190 | 49.320 | 294 | 127 | 7 | 26 | 309 | 30 | 311 | 6.77e-91 | 273 |
| MS.gene45677.t1 | MTR_1g022190 | 49.320 | 294 | 127 | 7 | 26 | 309 | 55 | 336 | 1.76e-90 | 273 |
| MS.gene45677.t1 | MTR_1g022190 | 49.153 | 295 | 128 | 7 | 26 | 310 | 60 | 342 | 2.48e-90 | 273 |
| MS.gene45677.t1 | MTR_8g028630 | 41.667 | 312 | 154 | 9 | 14 | 309 | 3 | 302 | 1.44e-64 | 207 |
| MS.gene45677.t1 | MTR_1g022190 | 49.515 | 206 | 88 | 4 | 26 | 227 | 55 | 248 | 1.26e-62 | 199 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45677.t1 | AT1G19400 | 54.485 | 301 | 127 | 5 | 13 | 310 | 10 | 303 | 1.12e-107 | 316 |
| MS.gene45677.t1 | AT1G19400 | 54.485 | 301 | 127 | 5 | 13 | 310 | 10 | 303 | 1.12e-107 | 316 |
| MS.gene45677.t1 | AT1G19400 | 54.485 | 301 | 127 | 5 | 13 | 310 | 10 | 303 | 1.12e-107 | 316 |
| MS.gene45677.t1 | AT1G75180 | 56.934 | 274 | 114 | 3 | 41 | 310 | 42 | 315 | 5.51e-107 | 314 |
| MS.gene45677.t1 | AT1G75180 | 56.934 | 274 | 114 | 3 | 41 | 310 | 42 | 315 | 5.51e-107 | 314 |
| MS.gene45677.t1 | AT1G19400 | 54.185 | 227 | 98 | 3 | 13 | 236 | 10 | 233 | 7.55e-79 | 240 |
| MS.gene45677.t1 | AT1G75180 | 56.477 | 193 | 82 | 1 | 41 | 231 | 42 | 234 | 1.32e-72 | 224 |
| MS.gene45677.t1 | AT1G75180 | 56.477 | 193 | 82 | 1 | 41 | 231 | 42 | 234 | 1.47e-71 | 223 |
| MS.gene45677.t1 | AT1G01500 | 41.892 | 296 | 141 | 10 | 36 | 310 | 42 | 327 | 1.10e-63 | 204 |
Find 81 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCAGGCACAAAGTTCTTTA+AGG | 0.155540 | 4.4:+37851958 | MS.gene45677:CDS |
| GATACCCTTCTTGAAGTTAA+TGG | 0.212761 | 4.4:+37851683 | MS.gene45677:CDS |
| GAGAATGATGCAAATGAAAA+TGG | 0.217056 | 4.4:+37852133 | MS.gene45677:CDS |
| TCCTTCTGCGCTTGCTTTGC+AGG | 0.233001 | 4.4:+37852162 | MS.gene45677:CDS |
| CATGGTTTAACGCCGGTGTT+AGG | 0.255714 | 4.4:+37852986 | MS.gene45677:CDS |
| CTCATATCAACCTTCGATAA+AGG | 0.271146 | 4.4:+37851550 | MS.gene45677:CDS |
| GAGAATTCGTATAAGGTTAA+TGG | 0.283457 | 4.4:+37851482 | MS.gene45677:CDS |
| GGAAATGGACCAAGTGAAAA+TGG | 0.283915 | 4.4:+37851503 | MS.gene45677:CDS |
| GTTAGGGTTGGTGTTGGTAT+TGG | 0.297925 | 4.4:+37853003 | MS.gene45677:CDS |
| AGAAGGGTATCAGGATTTAA+AGG | 0.331368 | 4.4:-37851671 | None:intergenic |
| AAAGATAAGCTTCTTCTGTT+TGG | 0.350138 | 4.4:+37851845 | MS.gene45677:CDS |
| TTAACTTCAAGAAGGGTATC+AGG | 0.353127 | 4.4:-37851680 | None:intergenic |
| TCGTATAAGGTTAATGGAAA+TGG | 0.363071 | 4.4:+37851488 | MS.gene45677:CDS |
| GCGAAGATGGGGAACTTTCA+TGG | 0.371984 | 4.4:+37852968 | MS.gene45677:CDS |
| AGAATAGCCGTCTTCTGAAT+TGG | 0.372025 | 4.4:-37853095 | None:intergenic |
| TATATTGCCGGGTCCTTCTC+TGG | 0.379377 | 4.4:+37852028 | MS.gene45677:CDS |
| CGTTACCGTGGTTAGACATA+AGG | 0.381604 | 4.4:+37851576 | MS.gene45677:CDS |
| CTTAGTGTTTGTCTTGGAAT+TGG | 0.388291 | 4.4:+37853027 | MS.gene45677:CDS |
| ACAATTGAGGTCTATATTGC+CGG | 0.393367 | 4.4:+37852016 | MS.gene45677:CDS |
| TTGTAAGCACTGATAGTATA+AGG | 0.394406 | 4.4:+37851789 | MS.gene45677:CDS |
| TGTTTGTCATACATGTAATC+TGG | 0.402010 | 4.4:-37852895 | None:intergenic |
| GCTTACAAACGTAACTTCTT+CGG | 0.405082 | 4.4:-37851774 | None:intergenic |
| CGCGATGGAGAATTCGTATA+AGG | 0.406902 | 4.4:+37851475 | None:intergenic |
| TTCTTGAAGTTAATGGTGTT+CGG | 0.422504 | 4.4:+37851690 | MS.gene45677:CDS |
| TGATTAAGTGTGAGAATCTC+AGG | 0.428692 | 4.4:-37851644 | None:intergenic |
| CTTGGAATTGGCATTGGAGT+TGG | 0.434913 | 4.4:+37853039 | MS.gene45677:CDS |
| CGGAGTAGTTTATATTCTGA+TGG | 0.435949 | 4.4:+37851710 | MS.gene45677:CDS |
| GCAATATAGACCTCAATTGT+TGG | 0.437528 | 4.4:-37852013 | None:intergenic |
| CATGCTCCAACTTTGTCCAT+TGG | 0.443619 | 4.4:-37851915 | None:intergenic |
| GGATTCCAACCCTTCTCAAA+AGG | 0.443968 | 4.4:+37851732 | MS.gene45677:CDS |
| TCCTTAAAGAACTTTGTGCC+TGG | 0.447833 | 4.4:-37851959 | None:intergenic |
| TCATATCAACCTTCGATAAA+GGG | 0.448459 | 4.4:+37851551 | MS.gene45677:CDS |
| TGTGAGTCGAATATAATTCC+AGG | 0.452189 | 4.4:+37851941 | MS.gene45677:CDS |
| ATGGTTTAACGCCGGTGTTA+GGG | 0.458989 | 4.4:+37852987 | MS.gene45677:CDS |
| AGAATGATGCAAATGAAAAT+GGG | 0.470852 | 4.4:+37852134 | MS.gene45677:CDS |
| CGTATGCTGTTCTTGTGTAT+AGG | 0.473133 | 4.4:-37852939 | None:intergenic |
| GTTTGTCTTGGAATTGGCAT+TGG | 0.473444 | 4.4:+37853033 | MS.gene45677:CDS |
| TGAATTGGCCGGTGGCACCT+TGG | 0.475731 | 4.4:-37853080 | None:intergenic |
| CAACCCTTCTCAAAAGGGAT+AGG | 0.480345 | 4.4:+37851738 | MS.gene45677:CDS |
| ATTGGACTTAGTGTTTGTCT+TGG | 0.481547 | 4.4:+37853021 | MS.gene45677:CDS |
| CAAATTCCAATGGACAAAGT+TGG | 0.486066 | 4.4:+37851909 | MS.gene45677:CDS |
| GCATACGCTGACGGCGAAGA+TGG | 0.492307 | 4.4:+37852955 | MS.gene45677:CDS |
| GTTACCGTGGTTAGACATAA+GGG | 0.505953 | 4.4:+37851577 | MS.gene45677:CDS |
| CATACGCTGACGGCGAAGAT+GGG | 0.511131 | 4.4:+37852956 | MS.gene45677:CDS |
| GATTCCAACCCTTCTCAAAA+GGG | 0.526688 | 4.4:+37851733 | MS.gene45677:CDS |
| GGAGTAGTTTATATTCTGAT+GGG | 0.528712 | 4.4:+37851711 | MS.gene45677:CDS |
| ACCTGCAAAGCAAGCGCAGA+AGG | 0.534939 | 4.4:-37852163 | None:intergenic |
| AACCCTTCTCAAAAGGGATA+GGG | 0.548703 | 4.4:+37851739 | MS.gene45677:CDS |
| GAGTGGTAGTGTGAAGTTTG+AGG | 0.549063 | 4.4:+37851814 | MS.gene45677:CDS |
| GCCGGTGTTAGGGTTGGTGT+TGG | 0.549235 | 4.4:+37852997 | MS.gene45677:CDS |
| CTCTACTCTTCCAACAATTG+AGG | 0.551724 | 4.4:+37852003 | MS.gene45677:CDS |
| ATTGTTGGAAGAGTAGAGTC+TGG | 0.555280 | 4.4:-37851998 | None:intergenic |
| AAATCATACCAAGGTGCCAC+CGG | 0.568352 | 4.4:+37853072 | MS.gene45677:CDS |
| GAACACCATTAACTTCAAGA+AGG | 0.569037 | 4.4:-37851688 | None:intergenic |
| TTTAACGCCGGTGTTAGGGT+TGG | 0.570434 | 4.4:+37852991 | MS.gene45677:CDS |
| GTTAGAGAATCAAATTCCAA+TGG | 0.572887 | 4.4:+37851899 | MS.gene45677:CDS |
| CGATAAAGGGTTCGTTACCG+TGG | 0.575746 | 4.4:+37851564 | MS.gene45677:CDS |
| TAGCCGTCTTCTGAATTGGC+CGG | 0.581948 | 4.4:-37853091 | None:intergenic |
| CAATTGAGGTCTATATTGCC+GGG | 0.582339 | 4.4:+37852017 | MS.gene45677:CDS |
| CCACCGGCCAATTCAGAAGA+CGG | 0.588469 | 4.4:+37853088 | MS.gene45677:CDS |
| TCTGGAATTGCATTCAACGC+CGG | 0.588676 | 4.4:-37852112 | None:intergenic |
| AAAATGGATACTCTATTGCT+AGG | 0.589815 | 4.4:+37851519 | MS.gene45677:CDS |
| AAGGTCTTCGTTAAGATGAT+CGG | 0.592566 | 4.4:-37852055 | None:intergenic |
| CGGAGTGCCAGAGAAGGACC+CGG | 0.592882 | 4.4:-37852035 | None:intergenic |
| GATGCAAATGAAAATGGGAA+AGG | 0.596141 | 4.4:+37852139 | MS.gene45677:CDS |
| AACACCATTAACTTCAAGAA+GGG | 0.596194 | 4.4:-37851687 | None:intergenic |
| CCTTCTCAAAAGGGATAGGG+TGG | 0.600087 | 4.4:+37851742 | MS.gene45677:CDS |
| ACAAGAACAGCATACGCTGA+CGG | 0.606360 | 4.4:+37852946 | MS.gene45677:CDS |
| TTAGAATTATGTAACAGCAA+TGG | 0.617960 | 4.4:+37851872 | MS.gene45677:CDS |
| ACCAACACCAACCCTAACAC+CGG | 0.618909 | 4.4:-37852998 | None:intergenic |
| ATACGCTGACGGCGAAGATG+GGG | 0.629010 | 4.4:+37852957 | MS.gene45677:CDS |
| ACTGATAGTATAAGGATGAG+TGG | 0.634943 | 4.4:+37851797 | MS.gene45677:CDS |
| GGTAACGAACCCTTTATCGA+AGG | 0.635026 | 4.4:-37851560 | None:intergenic |
| CATGATGATGAGGATTATCA+CGG | 0.635768 | 4.4:+37852916 | MS.gene45677:CDS |
| GATGATCGGAGTGCCAGAGA+AGG | 0.637274 | 4.4:-37852041 | None:intergenic |
| CCGTCTTCTGAATTGGCCGG+TGG | 0.642624 | 4.4:-37853088 | None:intergenic |
| AACACCCTTATGTCTAACCA+CGG | 0.647619 | 4.4:-37851581 | None:intergenic |
| GAACTTTCATGGTTTAACGC+CGG | 0.650464 | 4.4:+37852979 | MS.gene45677:CDS |
| AAGTGTGAGAATCTCAGGAG+TGG | 0.662685 | 4.4:-37851639 | None:intergenic |
| GTATGACAAACATGATGATG+AGG | 0.669080 | 4.4:+37852906 | MS.gene45677:CDS |
| ATACTCGTTAAATCATACCA+AGG | 0.711189 | 4.4:+37853063 | MS.gene45677:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATAACTGTAAATTATCT+TGG | + | chr4.4:37852607-37852626 | MS.gene45677:intron | 15.0% |
| !! | GCATTTACATATAAATAATA+AGG | - | chr4.4:37852867-37852886 | None:intergenic | 15.0% |
| !!! | AAATTTTTAAAATCTTGTCA+AGG | - | chr4.4:37852777-37852796 | None:intergenic | 15.0% |
| !! | TTTAAATAAGCACATGAAAA+AGG | - | chr4.4:37852211-37852230 | None:intergenic | 20.0% |
| !!! | AGGAATTATCTATAATTTGT+TGG | - | chr4.4:37852847-37852866 | None:intergenic | 20.0% |
| !!! | GGAATTATCTATAATTTGTT+GGG | - | chr4.4:37852846-37852865 | None:intergenic | 20.0% |
| ! | AGAATGATGCAAATGAAAAT+GGG | + | chr4.4:37852134-37852153 | MS.gene45677:CDS | 25.0% |
| ! | ATATTTATGACCAAACCAAA+TGG | + | chr4.4:37852797-37852816 | MS.gene45677:intron | 25.0% |
| ! | TATTTATATGTAAATGCTGC+AGG | + | chr4.4:37852870-37852889 | MS.gene45677:intron | 25.0% |
| ! | TTAGAATTATGTAACAGCAA+TGG | + | chr4.4:37851872-37851891 | MS.gene45677:CDS | 25.0% |
| ! | TTCTTCATAAGATTTCCATT+TGG | - | chr4.4:37852815-37852834 | None:intergenic | 25.0% |
| !! | TACAAAGTGTTCTTAAATAG+TGG | + | chr4.4:37852382-37852401 | MS.gene45677:intron | 25.0% |
| !!! | TCTATAATTTGTTGGGAAAA+TGG | - | chr4.4:37852839-37852858 | None:intergenic | 25.0% |
| AAAATGGATACTCTATTGCT+AGG | + | chr4.4:37851519-37851538 | MS.gene45677:CDS | 30.0% | |
| AAAGATAAGCTTCTTCTGTT+TGG | + | chr4.4:37851845-37851864 | MS.gene45677:CDS | 30.0% | |
| AACACCATTAACTTCAAGAA+GGG | - | chr4.4:37851690-37851709 | None:intergenic | 30.0% | |
| ATACTCGTTAAATCATACCA+AGG | + | chr4.4:37853063-37853082 | MS.gene45677:CDS | 30.0% | |
| ATTCAAGCAACAAGTTAACA+AGG | - | chr4.4:37852264-37852283 | None:intergenic | 30.0% | |
| CATAAGATTTCCATTTGGTT+TGG | - | chr4.4:37852810-37852829 | None:intergenic | 30.0% | |
| GAGAATGATGCAAATGAAAA+TGG | + | chr4.4:37852133-37852152 | MS.gene45677:CDS | 30.0% | |
| GAGAATTCGTATAAGGTTAA+TGG | + | chr4.4:37851482-37851501 | MS.gene45677:CDS | 30.0% | |
| GGAGTAGTTTATATTCTGAT+GGG | + | chr4.4:37851711-37851730 | MS.gene45677:CDS | 30.0% | |
| GTTAGAGAATCAAATTCCAA+TGG | + | chr4.4:37851899-37851918 | MS.gene45677:CDS | 30.0% | |
| GTTCTCAAAAAAGACATACA+AGG | + | chr4.4:37852086-37852105 | MS.gene45677:CDS | 30.0% | |
| TCATATCAACCTTCGATAAA+GGG | + | chr4.4:37851551-37851570 | MS.gene45677:CDS | 30.0% | |
| TCGTATAAGGTTAATGGAAA+TGG | + | chr4.4:37851488-37851507 | MS.gene45677:CDS | 30.0% | |
| TGTTTGTCATACATGTAATC+TGG | - | chr4.4:37852898-37852917 | None:intergenic | 30.0% | |
| TTCTTGAAGTTAATGGTGTT+CGG | + | chr4.4:37851690-37851709 | MS.gene45677:CDS | 30.0% | |
| ! | TTTTCATTTGCATCATTCTC+TGG | - | chr4.4:37852133-37852152 | None:intergenic | 30.0% |
| !! | ATAGAGTATCCATTTTCACT+TGG | - | chr4.4:37851515-37851534 | None:intergenic | 30.0% |
| !! | TTGTAAGCACTGATAGTATA+AGG | + | chr4.4:37851789-37851808 | MS.gene45677:CDS | 30.0% |
| !! | TTTTTGAGAACTAAGATGCA+AGG | - | chr4.4:37852077-37852096 | None:intergenic | 30.0% |
| !!! | ACATAAGGGTGTTTTATGTA+AGG | + | chr4.4:37851591-37851610 | MS.gene45677:CDS | 30.0% |
| !!! | CATAAGGGTGTTTTATGTAA+GGG | + | chr4.4:37851592-37851611 | MS.gene45677:CDS | 30.0% |
| AAAAAGACATACAAGGAAGC+CGG | + | chr4.4:37852093-37852112 | MS.gene45677:CDS | 35.0% | |
| AAGGTCTTCGTTAAGATGAT+CGG | - | chr4.4:37852058-37852077 | None:intergenic | 35.0% | |
| ACAATTGAGGTCTATATTGC+CGG | + | chr4.4:37852016-37852035 | MS.gene45677:CDS | 35.0% | |
| ACTGATAGTATAAGGATGAG+TGG | + | chr4.4:37851797-37851816 | MS.gene45677:CDS | 35.0% | |
| ATTATGTTCCATCTCCTACT+AGG | - | chr4.4:37852579-37852598 | None:intergenic | 35.0% | |
| ATTGGACTTAGTGTTTGTCT+TGG | + | chr4.4:37853021-37853040 | MS.gene45677:CDS | 35.0% | |
| CAAATTCCAATGGACAAAGT+TGG | + | chr4.4:37851909-37851928 | MS.gene45677:CDS | 35.0% | |
| CGGAGTAGTTTATATTCTGA+TGG | + | chr4.4:37851710-37851729 | MS.gene45677:CDS | 35.0% | |
| CTCATATCAACCTTCGATAA+AGG | + | chr4.4:37851550-37851569 | MS.gene45677:CDS | 35.0% | |
| CTTAGTGTTTGTCTTGGAAT+TGG | + | chr4.4:37853027-37853046 | MS.gene45677:CDS | 35.0% | |
| GAACACCATTAACTTCAAGA+AGG | - | chr4.4:37851691-37851710 | None:intergenic | 35.0% | |
| GATACCCTTCTTGAAGTTAA+TGG | + | chr4.4:37851683-37851702 | MS.gene45677:CDS | 35.0% | |
| GATGCAAATGAAAATGGGAA+AGG | + | chr4.4:37852139-37852158 | MS.gene45677:CDS | 35.0% | |
| GCAATATAGACCTCAATTGT+TGG | - | chr4.4:37852016-37852035 | None:intergenic | 35.0% | |
| GCTTACAAACGTAACTTCTT+CGG | - | chr4.4:37851777-37851796 | None:intergenic | 35.0% | |
| TGATATGCGATTGACAATAC+AGG | + | chr4.4:37852454-37852473 | MS.gene45677:intron | 35.0% | |
| TGATTAAGTGTGAGAATCTC+AGG | - | chr4.4:37851647-37851666 | None:intergenic | 35.0% | |
| TGTGAGTCGAATATAATTCC+AGG | + | chr4.4:37851941-37851960 | MS.gene45677:CDS | 35.0% | |
| ! | AACTATTTTCATCACTCGTC+AGG | - | chr4.4:37852753-37852772 | None:intergenic | 35.0% |
| ! | AGGTATAGCGTTGCTTTAAT+TGG | + | chr4.4:37852474-37852493 | MS.gene45677:intron | 35.0% |
| ! | CATGATGATGAGGATTATCA+CGG | + | chr4.4:37852916-37852935 | MS.gene45677:CDS | 35.0% |
| ! | GATTTGTTCAAATCCCTCAA+GGG | - | chr4.4:37852335-37852354 | None:intergenic | 35.0% |
| ! | GTATGACAAACATGATGATG+AGG | + | chr4.4:37852906-37852925 | MS.gene45677:CDS | 35.0% |
| !! | AGAAGGGTATCAGGATTTAA+AGG | - | chr4.4:37851674-37851693 | None:intergenic | 35.0% |
| !! | ATTGGCTCAACGCAATTTTA+TGG | + | chr4.4:37852492-37852511 | MS.gene45677:intron | 35.0% |
| !! | TTAACTTCAAGAAGGGTATC+AGG | - | chr4.4:37851683-37851702 | None:intergenic | 35.0% |
| !! | TTATCTTGGCTCTTTTTCTG+AGG | + | chr4.4:37852621-37852640 | MS.gene45677:intron | 35.0% |
| AACACCCTTATGTCTAACCA+CGG | - | chr4.4:37851584-37851603 | None:intergenic | 40.0% | |
| AACCCTTCTCAAAAGGGATA+GGG | + | chr4.4:37851739-37851758 | MS.gene45677:CDS | 40.0% | |
| AGAATAGCCGTCTTCTGAAT+TGG | - | chr4.4:37853098-37853117 | None:intergenic | 40.0% | |
| AGTACCGCAATTTGACAACA+CGG | - | chr4.4:37852301-37852320 | None:intergenic | 40.0% | |
| ATTGTTGGAAGAGTAGAGTC+TGG | - | chr4.4:37852001-37852020 | None:intergenic | 40.0% | |
| CAATTGAGGTCTATATTGCC+GGG | + | chr4.4:37852017-37852036 | MS.gene45677:CDS | 40.0% | |
| CGTATGCTGTTCTTGTGTAT+AGG | - | chr4.4:37852942-37852961 | None:intergenic | 40.0% | |
| CTCTACTCTTCCAACAATTG+AGG | + | chr4.4:37852003-37852022 | MS.gene45677:CDS | 40.0% | |
| GAACTTTCATGGTTTAACGC+CGG | + | chr4.4:37852979-37852998 | MS.gene45677:CDS | 40.0% | |
| GATTCCAACCCTTCTCAAAA+GGG | + | chr4.4:37851733-37851752 | MS.gene45677:CDS | 40.0% | |
| GCTATGGCATTGTACTTTAG+TGG | + | chr4.4:37852406-37852425 | MS.gene45677:intron | 40.0% | |
| GGAAATGGACCAAGTGAAAA+TGG | + | chr4.4:37851503-37851522 | MS.gene45677:CDS | 40.0% | |
| GGAGTCGTTTGAATATGACA+TGG | + | chr4.4:37852513-37852532 | MS.gene45677:intron | 40.0% | |
| GTTACCGTGGTTAGACATAA+GGG | + | chr4.4:37851577-37851596 | MS.gene45677:CDS | 40.0% | |
| GTTCTTAAATAGTGGCGCTA+TGG | + | chr4.4:37852390-37852409 | MS.gene45677:intron | 40.0% | |
| GTTTGTCTTGGAATTGGCAT+TGG | + | chr4.4:37853033-37853052 | MS.gene45677:CDS | 40.0% | |
| TCCAGGCACAAAGTTCTTTA+AGG | + | chr4.4:37851958-37851977 | MS.gene45677:CDS | 40.0% | |
| TCCTTAAAGAACTTTGTGCC+TGG | - | chr4.4:37851962-37851981 | None:intergenic | 40.0% | |
| TTTGAGAAATAGCTGTCCTC+CGG | + | chr4.4:37852687-37852706 | MS.gene45677:intron | 40.0% | |
| ! | ATGCGCTGACATAGTTAAAG+AGG | - | chr4.4:37852238-37852257 | None:intergenic | 40.0% |
| ! | CGATTTGTTCAAATCCCTCA+AGG | - | chr4.4:37852336-37852355 | None:intergenic | 40.0% |
| AAGTGTGAGAATCTCAGGAG+TGG | - | chr4.4:37851642-37851661 | None:intergenic | 45.0% | |
| ACAAGAACAGCATACGCTGA+CGG | + | chr4.4:37852946-37852965 | MS.gene45677:CDS | 45.0% | |
| CAACCCTTCTCAAAAGGGAT+AGG | + | chr4.4:37851738-37851757 | MS.gene45677:CDS | 45.0% | |
| CATGCTCCAACTTTGTCCAT+TGG | - | chr4.4:37851918-37851937 | None:intergenic | 45.0% | |
| CGTTACCGTGGTTAGACATA+AGG | + | chr4.4:37851576-37851595 | MS.gene45677:CDS | 45.0% | |
| GACTCCGTGTTGTCAAATTG+CGG | + | chr4.4:37852294-37852313 | MS.gene45677:intron | 45.0% | |
| GACTGATGTCACAACCTAGT+AGG | + | chr4.4:37852562-37852581 | MS.gene45677:intron | 45.0% | |
| GGATTCCAACCCTTCTCAAA+AGG | + | chr4.4:37851732-37851751 | MS.gene45677:CDS | 45.0% | |
| GGTAACGAACCCTTTATCGA+AGG | - | chr4.4:37851563-37851582 | None:intergenic | 45.0% | |
| TGTCACAACCTAGTAGGAGA+TGG | + | chr4.4:37852568-37852587 | MS.gene45677:intron | 45.0% | |
| ! | AAATCATACCAAGGTGCCAC+CGG | + | chr4.4:37853072-37853091 | MS.gene45677:CDS | 45.0% |
| ! | ATGGTTTAACGCCGGTGTTA+GGG | + | chr4.4:37852987-37853006 | MS.gene45677:CDS | 45.0% |
| ! | CTTGGAATTGGCATTGGAGT+TGG | + | chr4.4:37853039-37853058 | MS.gene45677:CDS | 45.0% |
| ! | GAGTGGTAGTGTGAAGTTTG+AGG | + | chr4.4:37851814-37851833 | MS.gene45677:CDS | 45.0% |
| ! | TCTGGAATTGCATTCAACGC+CGG | - | chr4.4:37852115-37852134 | None:intergenic | 45.0% |
| !! | CACCCTATCCCTTTTGAGAA+GGG | - | chr4.4:37851744-37851763 | None:intergenic | 45.0% |
| !! | CTATCCCTTTTGAGAAGGGT+TGG | - | chr4.4:37851740-37851759 | None:intergenic | 45.0% |
| !! | GTTAGGGTTGGTGTTGGTAT+TGG | + | chr4.4:37853003-37853022 | MS.gene45677:CDS | 45.0% |
| ACCAACACCAACCCTAACAC+CGG | - | chr4.4:37853001-37853020 | None:intergenic | 50.0% | |
| ACTATAGCGCTATGCCCTTG+AGG | + | chr4.4:37852318-37852337 | MS.gene45677:intron | 50.0% | |
| CATGGTTTAACGCCGGTGTT+AGG | + | chr4.4:37852986-37853005 | MS.gene45677:CDS | 50.0% | |
| CCTTCTCAAAAGGGATAGGG+TGG | + | chr4.4:37851742-37851761 | MS.gene45677:CDS | 50.0% | |
| CGATAAAGGGTTCGTTACCG+TGG | + | chr4.4:37851564-37851583 | MS.gene45677:CDS | 50.0% | |
| CTATAGCGCTATGCCCTTGA+GGG | + | chr4.4:37852319-37852338 | MS.gene45677:intron | 50.0% | |
| GCGAAGATGGGGAACTTTCA+TGG | + | chr4.4:37852968-37852987 | MS.gene45677:CDS | 50.0% | |
| TAGCCGTCTTCTGAATTGGC+CGG | - | chr4.4:37853094-37853113 | None:intergenic | 50.0% | |
| TATATTGCCGGGTCCTTCTC+TGG | + | chr4.4:37852028-37852047 | MS.gene45677:CDS | 50.0% | |
| TGACAACACGGAGTCACACA+TGG | - | chr4.4:37852289-37852308 | None:intergenic | 50.0% | |
| ! | TTTAACGCCGGTGTTAGGGT+TGG | + | chr4.4:37852991-37853010 | MS.gene45677:CDS | 50.0% |
| !! | CCACCCTATCCCTTTTGAGA+AGG | - | chr4.4:37851745-37851764 | None:intergenic | 50.0% |
| ACCTGCAAAGCAAGCGCAGA+AGG | - | chr4.4:37852166-37852185 | None:intergenic | 55.0% | |
| ATACGCTGACGGCGAAGATG+GGG | + | chr4.4:37852957-37852976 | MS.gene45677:CDS | 55.0% | |
| CATACGCTGACGGCGAAGAT+GGG | + | chr4.4:37852956-37852975 | MS.gene45677:CDS | 55.0% | |
| CCACCGGCCAATTCAGAAGA+CGG | + | chr4.4:37853088-37853107 | MS.gene45677:CDS | 55.0% | |
| TCCTTCTGCGCTTGCTTTGC+AGG | + | chr4.4:37852162-37852181 | MS.gene45677:CDS | 55.0% | |
| ! | GATGATCGGAGTGCCAGAGA+AGG | - | chr4.4:37852044-37852063 | None:intergenic | 55.0% |
| CCGTCTTCTGAATTGGCCGG+TGG | - | chr4.4:37853091-37853110 | None:intergenic | 60.0% | |
| GCATACGCTGACGGCGAAGA+TGG | + | chr4.4:37852955-37852974 | MS.gene45677:CDS | 60.0% | |
| TGAATTGGCCGGTGGCACCT+TGG | - | chr4.4:37853083-37853102 | None:intergenic | 60.0% | |
| !! | GCCGGTGTTAGGGTTGGTGT+TGG | + | chr4.4:37852997-37853016 | MS.gene45677:CDS | 60.0% |
| GCCTGCATGTGCTCTCGAGC+CGG | - | chr4.4:37852709-37852728 | None:intergenic | 65.0% | |
| TGCATGTGCTCTCGAGCCGG+AGG | - | chr4.4:37852706-37852725 | None:intergenic | 65.0% | |
| ! | CGGAGTGCCAGAGAAGGACC+CGG | - | chr4.4:37852038-37852057 | None:intergenic | 65.0% |
| ! | TCCGGCTCGAGAGCACATGC+AGG | + | chr4.4:37852705-37852724 | MS.gene45677:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 37851479 | 37853119 | 37851479 | ID=MS.gene45677 |
| chr4.4 | mRNA | 37851479 | 37853119 | 37851479 | ID=MS.gene45677.t1;Parent=MS.gene45677 |
| chr4.4 | exon | 37851479 | 37852183 | 37851479 | ID=MS.gene45677.t1.exon1;Parent=MS.gene45677.t1 |
| chr4.4 | CDS | 37851479 | 37852183 | 37851479 | ID=cds.MS.gene45677.t1;Parent=MS.gene45677.t1 |
| chr4.4 | exon | 37852892 | 37853119 | 37852892 | ID=MS.gene45677.t1.exon2;Parent=MS.gene45677.t1 |
| chr4.4 | CDS | 37852892 | 37853119 | 37852892 | ID=cds.MS.gene45677.t1;Parent=MS.gene45677.t1 |
| Gene Sequence |
| Protein sequence |
