AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene45833


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45833.t1 MTR_8g104280 55.046 218 47 7 189 355 157 374 2.86e-58 206
MS.gene45833.t1 MTR_8g104280 66.379 116 32 1 347 462 603 711 1.78e-35 140
MS.gene45833.t1 MTR_2g099870 63.793 116 35 1 347 462 497 605 4.69e-35 139
MS.gene45833.t1 MTR_2g099870 55.856 111 30 1 189 280 142 252 1.61e-26 113
MS.gene45833.t1 MTR_2g044070 89.855 69 7 0 50 118 122 190 3.10e-33 134
MS.gene45833.t1 MTR_2g044070 90.196 51 5 0 1 51 1 51 2.28e-19 92.0
MS.gene45833.t1 MTR_4g124660 83.582 67 11 0 52 118 126 192 2.76e-29 122
MS.gene45833.t1 MTR_4g124660 81.250 48 9 0 4 51 6 53 2.00e-15 79.7
MS.gene45833.t1 MTR_4g124660 83.582 67 11 0 52 118 126 192 3.10e-29 122
MS.gene45833.t1 MTR_4g124660 81.250 48 9 0 4 51 6 53 2.14e-15 79.7
MS.gene45833.t1 MTR_0602s0010 77.941 68 15 0 101 168 61 128 1.47e-25 108
MS.gene45833.t1 MTR_4g025470 80.303 66 13 0 103 168 1156 1221 1.35e-24 108
MS.gene45833.t1 MTR_4g025470 43.750 144 31 4 171 300 1533 1640 2.51e-20 95.5
MS.gene45833.t1 MTR_7g108930 68.254 63 20 0 56 118 130 192 3.47e-21 97.8
MS.gene45833.t1 MTR_1g088170 62.687 67 25 0 52 118 129 195 1.24e-20 95.9
MS.gene45833.t1 MTR_4g025430 77.966 59 13 0 110 168 1130 1188 3.65e-20 95.1
MS.gene45833.t1 MTR_7g025190 63.636 55 20 0 52 106 27 81 1.41e-15 72.8
MS.gene45833.t1 MTR_1g036750 37.405 131 60 4 100 208 1150 1280 1.70e-11 67.8
MS.gene45833.t1 MTR_0006s0230 44.318 88 38 2 100 176 1150 1237 3.03e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45833.t1 AT4G10760 56.637 113 42 1 347 459 570 675 1.27e-29 123
MS.gene45833.t1 AT4G10760 39.175 194 88 6 189 355 158 348 5.82e-25 109
MS.gene45833.t1 AT3G43190 79.688 64 13 0 55 118 131 194 3.34e-26 113
MS.gene45833.t1 AT3G43190 65.957 47 16 0 4 50 8 54 7.54e-12 68.6
MS.gene45833.t1 AT3G43190 79.688 64 13 0 55 118 131 194 3.34e-26 113
MS.gene45833.t1 AT3G43190 65.957 47 16 0 4 50 8 54 7.54e-12 68.6
MS.gene45833.t1 AT5G49190 59.091 66 27 0 53 118 116 181 3.74e-20 94.7
MS.gene45833.t1 AT5G49190 59.091 66 27 0 53 118 126 191 3.81e-20 94.7
MS.gene45833.t1 AT5G49190 59.091 66 27 0 53 118 60 125 4.07e-20 94.4
MS.gene45833.t1 AT4G02280 62.903 62 23 0 57 118 133 194 8.83e-19 90.5
MS.gene45833.t1 AT5G20830 67.500 80 23 1 55 131 131 210 9.30e-19 90.1
MS.gene45833.t1 AT5G20830 67.500 80 23 1 55 131 131 210 9.30e-19 90.1
MS.gene45833.t1 AT5G20830 67.500 80 23 1 55 131 131 210 9.30e-19 90.1

Find 114 sgRNAs with CRISPR-Local

Find 332 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAGGTTTCTGTTTATTTC+TGG 0.123764 4.4:-76223484 None:intergenic
CGCTCACATGAATGAAATTT+TGG 0.151632 4.4:+76219569 MS.gene45833:CDS
TGCTGATGTTGTGCAGTTTC+AGG 0.175332 4.4:-76222909 None:intergenic
ACTAAATAAGAGATTGTTTA+GGG 0.251304 4.4:+76223194 MS.gene45833:CDS
GACTACCCTTTATTCCAAAA+AGG 0.260131 4.4:-76223462 None:intergenic
AACATATGACGAGGATATTA+AGG 0.260841 4.4:+76223158 MS.gene45833:CDS
CTCAGGCTTCACAACTATAA+TGG 0.265646 4.4:+76220238 MS.gene45833:CDS
CCAATCGACTTGTTCAGATT+TGG 0.310737 4.4:-76220133 None:intergenic
CTGCAACTCTTCCGTTCATA+TGG 0.348696 4.4:+76222224 MS.gene45833:CDS
TACTAAATAAGAGATTGTTT+AGG 0.379866 4.4:+76223193 MS.gene45833:CDS
CCATAAAAGCCTTTGAGCTT+CGG 0.390151 4.4:-76221675 None:intergenic
CATATGAACGGAAGAGTTGC+AGG 0.393145 4.4:-76222223 None:intergenic
TCAGGCTTCACAACTATAAT+GGG 0.400158 4.4:+76220239 MS.gene45833:CDS
GCTGGCTGCAACTCCACATA+TGG 0.404331 4.4:-76224372 None:intergenic
AAGGGGAGCACCAAGACTAA+TGG 0.405694 4.4:+76223077 MS.gene45833:intron
AACTCTTAATGTAGTTCTAA+AGG 0.410031 4.4:+76220058 MS.gene45833:intron
AGCCACTGTTGGAATTCCTC+AGG 0.416144 4.4:+76220221 MS.gene45833:CDS
CTGAACAAGTCGATTGGAAA+TGG 0.416149 4.4:+76220139 MS.gene45833:CDS
ATGTCATTGTTGCTGAAGTT+CGG 0.417882 4.4:+76223512 MS.gene45833:CDS
TGATAACGGTGCCGTTGAAT+TGG 0.421148 4.4:+76222812 MS.gene45833:CDS
TTTATATGGCATCACATCAA+TGG 0.423784 4.4:-76223130 None:intergenic
CAACGACCTGATGGTGTTGT+AGG 0.432088 4.4:-76219925 None:intergenic
AGGGGAGCACCAAGACTAAT+GGG 0.437318 4.4:+76223078 MS.gene45833:intron
TCCATCAGGTGGTTGTCTCC+TGG 0.437714 4.4:+76224285 MS.gene45833:intron
CAAACCTCCACGCAACTCTT+CGG 0.442018 4.4:+76222254 MS.gene45833:CDS
AGACTCTAGTGTTGCTGAGC+TGG 0.452737 4.4:+76224425 MS.gene45833:CDS
TGTCATTGTTGCTGAAGTTC+GGG 0.452854 4.4:+76223513 MS.gene45833:CDS
AGGATTGAAGCAAAGGGAAA+GGG 0.460460 4.4:+76219899 MS.gene45833:intron
TGTGGATGTGAATGGTGTTA+TGG 0.470456 4.4:+76222950 MS.gene45833:CDS
TTGGAAGAGTTTGTTGTAAG+TGG 0.472057 4.4:+76222831 MS.gene45833:CDS
ATATAGATAGGACCGGTCTC+TGG 0.478453 4.4:+76222877 MS.gene45833:CDS
TTACACTACTCGACTGTGAA+TGG 0.479973 4.4:-76223943 None:intergenic
CAGATTTGGTCGAGGAAAAG+AGG 0.483537 4.4:-76220119 None:intergenic
AGAAAGCTTGCAGCCACTGT+TGG 0.489165 4.4:+76220210 MS.gene45833:CDS
TACACTACTCGACTGTGAAT+GGG 0.490671 4.4:-76223942 None:intergenic
GCCAACATTCCCATTAGTCT+TGG 0.495054 4.4:-76223087 None:intergenic
GTGCAAATACAAACCTCATC+TGG 0.496595 4.4:-76223550 None:intergenic
TGGAAGAGTTTGTTGTAAGT+GGG 0.496976 4.4:+76222832 MS.gene45833:CDS
AGGCAACTTTGTGCTTGAGT+TGG 0.498220 4.4:+76220078 MS.gene45833:CDS
CGAGGAAAAGAGGCGTTGAA+TGG 0.500710 4.4:-76220109 None:intergenic
CGAGGTAGCTTTGAGGTCAA+TGG 0.500717 4.4:+76222785 MS.gene45833:CDS
ACCACATTTCGTTGTTGAAG+AGG 0.502510 4.4:+76221803 MS.gene45833:CDS
GCTGCAAGCTTTCTTTGCCA+TGG 0.503047 4.4:-76220201 None:intergenic
GGTGTAAGGTTAGTTGATGA+AGG 0.503650 4.4:+76224321 MS.gene45833:CDS
GAGATTCATCAAATCTCTCA+TGG 0.510008 4.4:-76219542 None:intergenic
GTAATCAATTGAGTGGTGTA+AGG 0.514327 4.4:+76224307 MS.gene45833:CDS
AGGCAATTCTCTCCAGAGAC+CGG 0.514697 4.4:-76222889 None:intergenic
TTGATGAAGGGCTGCTGGCA+AGG 0.514978 4.4:+76224334 MS.gene45833:CDS
TTGTGATCGAGGTAGCTTTG+AGG 0.517149 4.4:+76222778 MS.gene45833:CDS
CACAGTCGAGTAGTGTAAGC+TGG 0.518099 4.4:+76223948 MS.gene45833:CDS
ACAGTCATCACTCTCAAAGA+TGG 0.518318 4.4:-76221720 None:intergenic
ACCTCTTAGAGCTTCTGCTA+TGG 0.518633 4.4:+76224398 MS.gene45833:CDS
AAGTGGGAAGTCAAGAATTG+TGG 0.518691 4.4:+76222848 MS.gene45833:CDS
GGGAATCCTACAACACCATC+AGG 0.520671 4.4:+76219919 MS.gene45833:CDS
ACACCACTCAATTGATTACC+AGG 0.521151 4.4:-76224303 None:intergenic
GTTAAAAGGATTGAAGCAAA+GGG 0.521973 4.4:+76219893 MS.gene45833:intron
AACAAACTCTTCCAATTCAA+CGG 0.525096 4.4:-76222823 None:intergenic
AAGGATTGAAGCAAAGGGAA+AGG 0.525891 4.4:+76219898 MS.gene45833:intron
TGTTAAAAGGATTGAAGCAA+AGG 0.529921 4.4:+76219892 MS.gene45833:intron
CCATGCACACATACTCATGC+AGG 0.531535 4.4:+76223983 MS.gene45833:CDS
GTGTTATGGCTGTGATGGGC+AGG 0.532324 4.4:+76222964 MS.gene45833:CDS
AAAGCTGCACTTCAAGAGCT+TGG 0.534531 4.4:+76222732 MS.gene45833:CDS
CCAAATCTGAACAAGTCGAT+TGG 0.536578 4.4:+76220133 MS.gene45833:CDS
TAAAGCAGCTTATCCATATG+TGG 0.537056 4.4:+76224359 MS.gene45833:CDS
ACCAAGACTAATGGGAATGT+TGG 0.537251 4.4:+76223086 MS.gene45833:CDS
TCCATAGCAGAAGCTCTAAG+AGG 0.537539 4.4:-76224399 None:intergenic
GTTAGTTGATGAAGGGCTGC+TGG 0.539111 4.4:+76224329 MS.gene45833:CDS
GGAAAAGTTTAGCAGAAAGA+TGG 0.541317 4.4:-76220180 None:intergenic
GCTGCACTTCAAGAGCTTGG+TGG 0.543909 4.4:+76222735 MS.gene45833:CDS
AAAGCCTTTGAGCTTCGGTA+AGG 0.551913 4.4:-76221670 None:intergenic
GAATGGTGTTATGGCTGTGA+TGG 0.553062 4.4:+76222959 MS.gene45833:CDS
GTTGACTGTATTTAAAACTC+AGG 0.553848 4.4:+76221758 MS.gene45833:CDS
GAAGCTCTAAGAGGTGATGC+TGG 0.557595 4.4:-76224390 None:intergenic
CAAACTCAGCAACGACCTGA+TGG 0.557924 4.4:-76219934 None:intergenic
CGAGGATATTAAGGATCTTG+AGG 0.568156 4.4:+76223167 MS.gene45833:CDS
GCAGCACTTCGATTCTGTGC+CGG 0.570481 4.4:-76224468 None:intergenic
GACTTGTTCAGATTTGGTCG+AGG 0.570825 4.4:-76220127 None:intergenic
GTTGCTGAGCTGGTCAAACA+AGG 0.571647 4.4:+76224435 MS.gene45833:CDS
CCTGCATGAGTATGTGTGCA+TGG 0.574887 4.4:-76223983 None:intergenic
CTCTCAAAGATGGACATGCA+AGG 0.577617 4.4:-76221710 None:intergenic
AATGGTGTTATGGCTGTGAT+GGG 0.577836 4.4:+76222960 MS.gene45833:CDS
ACCTCTTCAACAACGAAATG+TGG 0.587914 4.4:-76221804 None:intergenic
TGAGTATGTGTGCATGGGAG+CGG 0.588704 4.4:-76223977 None:intergenic
TCGTTGCTGAGTTTGAAGAA+AGG 0.589641 4.4:+76219942 MS.gene45833:CDS
AAGGCCTTACCGAAGCTCAA+AGG 0.593664 4.4:+76221666 MS.gene45833:intron
GAATCTAGTGTGGATGTGAA+TGG 0.601492 4.4:+76222942 MS.gene45833:CDS
AACAAGCGGCAAGCCAGATG+AGG 0.602444 4.4:+76223537 MS.gene45833:CDS
CAAAATTTCATTCATGTGAG+CGG 0.604294 4.4:-76219568 None:intergenic
GCTACCTCGATCACAAGTGT+TGG 0.611347 4.4:-76222771 None:intergenic
AGGGCCAACACTTGTGATCG+AGG 0.611689 4.4:+76222767 MS.gene45833:CDS
TCTGATGCGTGGATGTTACA+TGG 0.613801 4.4:+76223005 MS.gene45833:CDS
TTGCTGAGCTGGTCAAACAA+GGG 0.614060 4.4:+76224436 MS.gene45833:CDS
TCTCAAAGATGGACATGCAA+GGG 0.615083 4.4:-76221709 None:intergenic
AGGTCAATGGCTGATGATAA+CGG 0.617616 4.4:+76222798 MS.gene45833:CDS
CTGCATGAGTATGTGTGCAT+GGG 0.625824 4.4:-76223982 None:intergenic
AACATCCACGCATCAGACAT+AGG 0.629646 4.4:-76222999 None:intergenic
CAACAATGACATCAGTGTCA+AGG 0.632031 4.4:-76223501 None:intergenic
TGCTGAGCTGGTCAAACAAG+GGG 0.634141 4.4:+76224437 MS.gene45833:CDS
CATTATAGTTGTGAAGCCTG+AGG 0.634698 4.4:-76220237 None:intergenic
TTTGTCGATATCCATATGAA+CGG 0.638345 4.4:-76222235 None:intergenic
TCTCCTGGTAATCAATTGAG+TGG 0.640738 4.4:+76224300 MS.gene45833:CDS
GCAGCAAAATGAATCTAGTG+TGG 0.643108 4.4:+76222932 MS.gene45833:CDS
GCTGAAGTTCGGGAAACAAG+CGG 0.644179 4.4:+76223523 MS.gene45833:CDS
GCTTCACAACTATAATGGGA+AGG 0.647192 4.4:+76220243 MS.gene45833:CDS
GGTTCTTGAAGCAACATCAG+AGG 0.652647 4.4:-76221783 None:intergenic
GAGCTTGGTGGAGATTCAAG+AGG 0.654675 4.4:+76222747 MS.gene45833:CDS
AGTCGAACCGAAGAGTTGCG+TGG 0.657964 4.4:-76222261 None:intergenic
ATGGGAATGTTGGCTGCACA+TGG 0.658639 4.4:+76223096 MS.gene45833:CDS
TGAGGCCTATGTCTGATGCG+TGG 0.664183 4.4:+76222994 MS.gene45833:CDS
GTGTAAGGTTAGTTGATGAA+GGG 0.665822 4.4:+76224322 MS.gene45833:CDS
AGCTTGGTGGAGATTCAAGA+GGG 0.676393 4.4:+76222748 MS.gene45833:CDS
CATGCACACATACTCATGCA+GGG 0.683799 4.4:+76223984 MS.gene45833:CDS
CGAACCGAAGAGTTGCGTGG+AGG 0.697911 4.4:-76222258 None:intergenic
AGCCTGAGGAATTCCAACAG+TGG 0.740321 4.4:-76220223 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAAAAACATTTATTTTGT+CGG - chr4.4:76222556-76222575 None:intergenic 10.0%
!!! ATAATGTAAAACAATTTTTT+TGG - chr4.4:76223686-76223705 None:intergenic 10.0%
!!! GTTCTAAAATATAAATAAAA+TGG + chr4.4:76221991-76222010 MS.gene45833:intron 10.0%
!!! GTTCTAAAATATAAATATAA+CGG + chr4.4:76220740-76220759 MS.gene45833:intron 10.0%
!!! TAAATGTTTTTATTGAAAAT+TGG + chr4.4:76222562-76222581 MS.gene45833:intron 10.0%
!! AAAAAAAATATACATGTGAA+TGG - chr4.4:76223746-76223765 None:intergenic 15.0%
!! AAAGAGTTATTATTGAAAAT+GGG - chr4.4:76222649-76222668 None:intergenic 15.0%
!! AATTAAACTATTTACAAGAT+CGG - chr4.4:76223812-76223831 None:intergenic 15.0%
!! TAAAGAGTTATTATTGAAAA+TGG - chr4.4:76222650-76222669 None:intergenic 15.0%
!! TCTTAAAAGTTAAAATAGTT+TGG + chr4.4:76224060-76224079 MS.gene45833:intron 15.0%
!! TTTAAATTCAAATACTCAAA+TGG - chr4.4:76223859-76223878 None:intergenic 15.0%
!!! GTTTTACATTATAATAAACT+CGG + chr4.4:76223694-76223713 MS.gene45833:intron 15.0%
!!! TTTAACTTTTAAGAATACAA+AGG - chr4.4:76224054-76224073 None:intergenic 15.0%
!!! TTTATTTTAATGTTTTCACA+TGG + chr4.4:76224516-76224535 MS.gene45833:CDS 15.0%
!! AAAAGTTAAAATAGTTTGGT+TGG + chr4.4:76224064-76224083 MS.gene45833:intron 20.0%
!! AAAGTTAAAATAGTTTGGTT+GGG + chr4.4:76224065-76224084 MS.gene45833:intron 20.0%
!! AACTATAAAAAGTAAAAACC+TGG - chr4.4:76223576-76223595 None:intergenic 20.0%
!! AAGAATATGATTAGATTTGA+AGG - chr4.4:76220397-76220416 None:intergenic 20.0%
!! AATTAACATTCAAAATCTCA+TGG + chr4.4:76219869-76219888 MS.gene45833:intron 20.0%
!! ACTAAATAAGAGATTGTTTA+GGG + chr4.4:76223194-76223213 MS.gene45833:CDS 20.0%
!! ACTAAATATGCAAAAAAACA+AGG - chr4.4:76219627-76219646 None:intergenic 20.0%
!! ACTATAAAAAGTAAAAACCT+GGG - chr4.4:76223575-76223594 None:intergenic 20.0%
!! ATAGGAAATGTAATTAATCA+AGG - chr4.4:76221011-76221030 None:intergenic 20.0%
!! CAAACATTATTAATATCTGA+TGG - chr4.4:76220298-76220317 None:intergenic 20.0%
!! CAAAGAAATGTAATTAATCA+AGG - chr4.4:76222294-76222313 None:intergenic 20.0%
!! CTTGATTAATTACATTTCTT+TGG + chr4.4:76222292-76222311 MS.gene45833:intron 20.0%
!! GTAAATAGTTTAATTAAGCT+TGG + chr4.4:76223817-76223836 MS.gene45833:intron 20.0%
!! GTAATTAATCAAGGAAATTA+CGG - chr4.4:76221002-76221021 None:intergenic 20.0%
!! TACCAAAGCTAAAAAATATA+TGG + chr4.4:76221371-76221390 MS.gene45833:intron 20.0%
!! TACTAAATAAGAGATTGTTT+AGG + chr4.4:76223193-76223212 MS.gene45833:CDS 20.0%
!! TGATTAATTACATTTCCTAT+GGG + chr4.4:76221011-76221030 MS.gene45833:intron 20.0%
!! TTAATCATAATCAAATGTGT+GGG + chr4.4:76222122-76222141 MS.gene45833:intron 20.0%
!! TTGATTAATTACATTTCCTA+TGG + chr4.4:76221010-76221029 MS.gene45833:intron 20.0%
!! TTTAATCATAATCAAATGTG+TGG + chr4.4:76222121-76222140 MS.gene45833:intron 20.0%
!!! ATTTTTAAGAGATAGGATTA+TGG + chr4.4:76220589-76220608 MS.gene45833:intron 20.0%
!!! TCATATGTTTTTGGTTTATA+TGG - chr4.4:76223147-76223166 None:intergenic 20.0%
!!! TTGGTAATGTATCTATAATT+AGG + chr4.4:76223648-76223667 MS.gene45833:intron 20.0%
! AAGAGTTAATGAAACATGTT+AGG - chr4.4:76220045-76220064 None:intergenic 25.0%
! AAGTTAAAATAGTTTGGTTG+GGG + chr4.4:76224066-76224085 MS.gene45833:intron 25.0%
! AATTAAGAATTGTCGTTCAA+TGG + chr4.4:76221213-76221232 MS.gene45833:intron 25.0%
! AGTTGTGAAAAAGAAATCTT+TGG + chr4.4:76222618-76222637 MS.gene45833:intron 25.0%
! ATTATTAATATCTGATGGCA+TGG - chr4.4:76220293-76220312 None:intergenic 25.0%
! CAAGTAGCATTTAAAAATCA+TGG - chr4.4:76222080-76222099 None:intergenic 25.0%
! CATTTACTGGAAAGTTATTA+TGG - chr4.4:76222331-76222350 None:intergenic 25.0%
! GAGTTTCTGTATAATACAAA+AGG - chr4.4:76222201-76222220 None:intergenic 25.0%
! GATTAATTACATTTCCTATG+GGG + chr4.4:76221012-76221031 MS.gene45833:intron 25.0%
! GCTAAAAAATATATGGAGTA+TGG + chr4.4:76221378-76221397 MS.gene45833:intron 25.0%
! GTTGTGAAAAAGAAATCTTT+GGG + chr4.4:76222619-76222638 MS.gene45833:intron 25.0%
! TCCTATCTCTTAAAAATCAA+AGG - chr4.4:76220586-76220605 None:intergenic 25.0%
!! CAACAATTTGAAATTCATGA+GGG + chr4.4:76222684-76222703 MS.gene45833:intron 25.0%
!! TCAACAATTTGAAATTCATG+AGG + chr4.4:76222683-76222702 MS.gene45833:intron 25.0%
!! TTGAAAAGAACACATGTTTT+GGG + chr4.4:76221863-76221882 MS.gene45833:intron 25.0%
!!! AACTCTTAATGTAGTTCTAA+AGG + chr4.4:76220058-76220077 MS.gene45833:intron 25.0%
!!! ACAACATGTTTTGATACTAT+GGG + chr4.4:76222019-76222038 MS.gene45833:intron 25.0%
!!! CTCCATATATTTTTTAGCTT+TGG - chr4.4:76221376-76221395 None:intergenic 25.0%
!!! TACAACATGTTTTGATACTA+TGG + chr4.4:76222018-76222037 MS.gene45833:intron 25.0%
!!! TTGTGGTTTTGAATATAGAT+AGG + chr4.4:76222865-76222884 MS.gene45833:CDS 25.0%
!!! TTTTAAAAACCTTAGACAAC+TGG + chr4.4:76221189-76221208 MS.gene45833:intron 25.0%
AAACTTAAGTCACACAGTAA+TGG - chr4.4:76221922-76221941 None:intergenic 30.0%
AAAGTTAATGCGACATTTAC+TGG - chr4.4:76222344-76222363 None:intergenic 30.0%
AACAAACTCTTCCAATTCAA+CGG - chr4.4:76222826-76222845 None:intergenic 30.0%
AACATATGACGAGGATATTA+AGG + chr4.4:76223158-76223177 MS.gene45833:CDS 30.0%
AAGGTTAACAATCACAAATG+TGG - chr4.4:76223783-76223802 None:intergenic 30.0%
AATGTGTTAAGGAGATCATT+TGG + chr4.4:76223363-76223382 MS.gene45833:intron 30.0%
ACAACAAGTTTAGATACCAT+GGG + chr4.4:76220768-76220787 MS.gene45833:intron 30.0%
ACTGGAAAGTTATTATGGTT+TGG - chr4.4:76222326-76222345 None:intergenic 30.0%
AGAACTTAAGTCACACATAA+TGG - chr4.4:76220672-76220691 None:intergenic 30.0%
ATATATCATCCAGAATGATG+AGG - chr4.4:76222502-76222521 None:intergenic 30.0%
ATCATTACAACAGAGGAAAA+TGG + chr4.4:76221068-76221087 MS.gene45833:intron 30.0%
ATGTGTTAAGGAGATCATTT+GGG + chr4.4:76223364-76223383 MS.gene45833:intron 30.0%
CAAAATTTCATTCATGTGAG+CGG - chr4.4:76219571-76219590 None:intergenic 30.0%
CATTAACTTTCTATTGTTGG+GGG + chr4.4:76222354-76222373 MS.gene45833:intron 30.0%
CGCATTAACTTTCTATTGTT+GGG + chr4.4:76222352-76222371 MS.gene45833:intron 30.0%
CTCTAGATGATATGTATTGT+AGG - chr4.4:76220492-76220511 None:intergenic 30.0%
GAAGAAACAGTGATATAGTT+GGG - chr4.4:76222048-76222067 None:intergenic 30.0%
GAAGAGTTTCTGTGTAATAA+TGG - chr4.4:76220921-76220940 None:intergenic 30.0%
GCATTAACTTTCTATTGTTG+GGG + chr4.4:76222353-76222372 MS.gene45833:intron 30.0%
GTGATATAATCTGATAAGCA+AGG - chr4.4:76222179-76222198 None:intergenic 30.0%
GTTAAAAGGATTGAAGCAAA+GGG + chr4.4:76219893-76219912 MS.gene45833:intron 30.0%
TAAACAAGTAGCATGAATCA+TGG - chr4.4:76220829-76220848 None:intergenic 30.0%
TAAACCAAAAACATATGACG+AGG + chr4.4:76223149-76223168 MS.gene45833:CDS 30.0%
TCAAGGTTTCTGTTTATTTC+TGG - chr4.4:76223487-76223506 None:intergenic 30.0%
TCATATCTTCTATACTGCTT+TGG - chr4.4:76221321-76221340 None:intergenic 30.0%
TCATTACAACAGAGGAAAAT+GGG + chr4.4:76221069-76221088 MS.gene45833:intron 30.0%
TCGCATTAACTTTCTATTGT+TGG + chr4.4:76222351-76222370 MS.gene45833:intron 30.0%
TCTTAATTTCCAGTTGTCTA+AGG - chr4.4:76221201-76221220 None:intergenic 30.0%
TGAAGAAACAGTAATATTGC+TGG - chr4.4:76220798-76220817 None:intergenic 30.0%
TGAAGAAACAGTGATATAGT+TGG - chr4.4:76222049-76222068 None:intergenic 30.0%
TGTTAAAAGGATTGAAGCAA+AGG + chr4.4:76219892-76219911 MS.gene45833:intron 30.0%
TTATCTTAGAAGAACATGCT+AGG - chr4.4:76220360-76220379 None:intergenic 30.0%
TTGGGGATATAAATGTGTTA+AGG + chr4.4:76223352-76223371 MS.gene45833:intron 30.0%
TTGTTCAACTTTGAATGTGT+GGG + chr4.4:76222097-76222116 MS.gene45833:intron 30.0%
TTTATATGGCATCACATCAA+TGG - chr4.4:76223133-76223152 None:intergenic 30.0%
TTTCAAATCCAGACAATACT+CGG - chr4.4:76224092-76224111 None:intergenic 30.0%
TTTGTCGATATCCATATGAA+CGG - chr4.4:76222238-76222257 None:intergenic 30.0%
! ATATCCTCGTCATATGTTTT+TGG - chr4.4:76223156-76223175 None:intergenic 30.0%
! ATGCAAAAATCTAAAACTGG+TGG + chr4.4:76223219-76223238 MS.gene45833:intron 30.0%
! CAAAATCTCATGGTGTTAAA+AGG + chr4.4:76219879-76219898 MS.gene45833:intron 30.0%
! CTTGAAAAGAACACATGTTT+TGG + chr4.4:76221862-76221881 MS.gene45833:intron 30.0%
! GAGATGCAAAAATCTAAAAC+TGG + chr4.4:76223216-76223235 MS.gene45833:CDS 30.0%
! GGGTGAAAACAAATTAGTTT+CGG + chr4.4:76223384-76223403 MS.gene45833:intron 30.0%
! GTTGACTGTATTTAAAACTC+AGG + chr4.4:76221758-76221777 MS.gene45833:CDS 30.0%
! TGCAAAAATCTAAAACTGGT+GGG + chr4.4:76223220-76223239 MS.gene45833:intron 30.0%
! TTAGTAAGTTCGTTTTGTCT+TGG - chr4.4:76223720-76223739 None:intergenic 30.0%
! TTCATGCTACTTGTTTAACT+TGG + chr4.4:76220832-76220851 MS.gene45833:intron 30.0%
!! AAATTTTGGCACTTTTGTCA+AGG + chr4.4:76219583-76219602 MS.gene45833:CDS 30.0%
!! GATTTCTTTTTCACAACTTG+AGG - chr4.4:76222616-76222635 None:intergenic 30.0%
!! GCCTTTGATTTTTAAGAGAT+AGG + chr4.4:76220582-76220601 MS.gene45833:intron 30.0%
!! GTTTTGAATATAGATAGGAC+CGG + chr4.4:76222870-76222889 MS.gene45833:CDS 30.0%
!!! AAATCTGAAGCTGTTTTTTG+AGG + chr4.4:76224230-76224249 MS.gene45833:intron 30.0%
!!! AAGTTGCCTTTTTGGAATAA+AGG + chr4.4:76223456-76223475 MS.gene45833:CDS 30.0%
!!! AATTCCAGCTTTCTTGTTTT+TGG - chr4.4:76223915-76223934 None:intergenic 30.0%
!!! AGTTGCCTTTTTGGAATAAA+GGG + chr4.4:76223457-76223476 MS.gene45833:CDS 30.0%
!!! ATTTTGTCGGTTTCTTATTC+TGG - chr4.4:76222543-76222562 None:intergenic 30.0%
!!! GTACTTATTTTTGTCTACCA+TGG + chr4.4:76221159-76221178 MS.gene45833:intron 30.0%
!!! GTTTTTAAAACTTCCAACCA+TGG - chr4.4:76221179-76221198 None:intergenic 30.0%
!!! TTATTTTTGTCTACCATGGT+TGG + chr4.4:76221163-76221182 MS.gene45833:intron 30.0%
AAGCTCAATCGTCTTTGTAT+AGG + chr4.4:76221549-76221568 MS.gene45833:intron 35.0%
AAGTCCAAAAACAAGAAAGC+TGG + chr4.4:76223908-76223927 MS.gene45833:CDS 35.0%
AATAACTAGAACTGGACGTA+CGG + chr4.4:76223409-76223428 MS.gene45833:intron 35.0%
ACTTGAAAACTTTGATCGTG+TGG + chr4.4:76221119-76221138 MS.gene45833:intron 35.0%
ATATGGAGTATGGATCCTAA+TGG + chr4.4:76221388-76221407 MS.gene45833:intron 35.0%
ATATTCTCCATTGTTCCATC+AGG + chr4.4:76224271-76224290 MS.gene45833:intron 35.0%
ATGTCATTGTTGCTGAAGTT+CGG + chr4.4:76223512-76223531 MS.gene45833:CDS 35.0%
ATTCTGTCAAATTTACCTCG+AGG + chr4.4:76219813-76219832 MS.gene45833:intron 35.0%
CCATTGCAGAAAAAATCAAG+AGG - chr4.4:76219990-76220009 None:intergenic 35.0%
CTTGAAAACTTTGATCGTGT+GGG + chr4.4:76221120-76221139 MS.gene45833:intron 35.0%
CTTGTTCAACTTTGAATGTG+TGG + chr4.4:76222096-76222115 MS.gene45833:intron 35.0%
GAACTACATATACATCAGTG+TGG + chr4.4:76221436-76221455 MS.gene45833:intron 35.0%
GACAACAAGTTTAGATACCA+TGG + chr4.4:76220767-76220786 MS.gene45833:intron 35.0%
GACTACCCTTTATTCCAAAA+AGG - chr4.4:76223465-76223484 None:intergenic 35.0%
GAGATTCATCAAATCTCTCA+TGG - chr4.4:76219545-76219564 None:intergenic 35.0%
GGAAAAGTTTAGCAGAAAGA+TGG - chr4.4:76220183-76220202 None:intergenic 35.0%
GGGCAGAAAAAATCATCTAT+AGG + chr4.4:76224202-76224221 MS.gene45833:intron 35.0%
GTAATCAATTGAGTGGTGTA+AGG + chr4.4:76224307-76224326 MS.gene45833:CDS 35.0%
TAAAGCAGCTTATCCATATG+TGG + chr4.4:76224359-76224378 MS.gene45833:CDS 35.0%
TAAGAATTGTCGTTCAATGG+AGG + chr4.4:76221216-76221235 MS.gene45833:intron 35.0%
TCAGGCTTCACAACTATAAT+GGG + chr4.4:76220239-76220258 MS.gene45833:CDS 35.0%
TCTTTGTATAGGTGATTGCA+AGG + chr4.4:76221516-76221535 MS.gene45833:intron 35.0%
TGAAAATGCAGAACTCCATT+AGG - chr4.4:76221406-76221425 None:intergenic 35.0%
TGAAGCAATCATTACAACAG+AGG + chr4.4:76221061-76221080 MS.gene45833:intron 35.0%
TGATTGCAAGGAAATTGTTG+CGG + chr4.4:76221572-76221591 MS.gene45833:intron 35.0%
TGCAATCACCTATACAAAGA+CGG - chr4.4:76221516-76221535 None:intergenic 35.0%
TTGAATATCTCTTCCACTGA+AGG - chr4.4:76221283-76221302 None:intergenic 35.0%
TTTCGGCAAATAACTAGAAC+TGG + chr4.4:76223401-76223420 MS.gene45833:intron 35.0%
! ACTTTGGAAAAAGCTACACT+CGG - chr4.4:76219776-76219795 None:intergenic 35.0%
! AGGTTTTCAATTCTCATGAC+TGG + chr4.4:76224008-76224027 MS.gene45833:intron 35.0%
! CGCTCACATGAATGAAATTT+TGG + chr4.4:76219569-76219588 MS.gene45833:CDS 35.0%
! CTTAAAAGTTAGAGTGCTCA+AGG - chr4.4:76221649-76221668 None:intergenic 35.0%
! CTTGAGCACTCTAACTTTTA+AGG + chr4.4:76221647-76221666 MS.gene45833:intron 35.0%
! CTTTCTGCTAAACTTTTCCA+TGG + chr4.4:76220184-76220203 MS.gene45833:CDS 35.0%
! GCAAAAATCTAAAACTGGTG+GGG + chr4.4:76223221-76223240 MS.gene45833:intron 35.0%
! TATCATCTAGAGCCTTCAAT+AGG + chr4.4:76220500-76220519 MS.gene45833:intron 35.0%
! TTACAACCAATGTTTTCTGG+TGG + chr4.4:76223047-76223066 MS.gene45833:intron 35.0%
! TTGAGAGTGATGACTGTTTT+AGG + chr4.4:76221726-76221745 MS.gene45833:CDS 35.0%
! TTGCCTAACTTTGAAAAACG+TGG + chr4.4:76223612-76223631 MS.gene45833:intron 35.0%
!! AAAGTTAGGCAAAGCATTGA+AGG - chr4.4:76223604-76223623 None:intergenic 35.0%
!! GTGTAAGGTTAGTTGATGAA+GGG + chr4.4:76224322-76224341 MS.gene45833:CDS 35.0%
!! TGACCACGTTTTTCAAAGTT+AGG - chr4.4:76223618-76223637 None:intergenic 35.0%
!! TGGAAGAGTTTGTTGTAAGT+GGG + chr4.4:76222832-76222851 MS.gene45833:CDS 35.0%
!! TGTAGCTTTTTCCAAAGTCA+TGG + chr4.4:76219778-76219797 MS.gene45833:intron 35.0%
!! TTGGAAGAGTTTGTTGTAAG+TGG + chr4.4:76222831-76222850 MS.gene45833:CDS 35.0%
!!! CCTCTTGATTTTTTCTGCAA+TGG + chr4.4:76219987-76220006 MS.gene45833:intron 35.0%
AACTTGAGGTTCAAGTCTGA+AGG - chr4.4:76222602-76222621 None:intergenic 40.0%
AAGCTCACAGTTCCTATTGA+AGG - chr4.4:76220515-76220534 None:intergenic 40.0%
AAGGATTGAAGCAAAGGGAA+AGG + chr4.4:76219898-76219917 MS.gene45833:intron 40.0%
AAGTGGGAAGTCAAGAATTG+TGG + chr4.4:76222848-76222867 MS.gene45833:CDS 40.0%
ACAATGTGTCACCATGACTT+TGG - chr4.4:76219792-76219811 None:intergenic 40.0%
ACACCACTCAATTGATTACC+AGG - chr4.4:76224306-76224325 None:intergenic 40.0%
ACAGTCATCACTCTCAAAGA+TGG - chr4.4:76221723-76221742 None:intergenic 40.0%
ACCAAGACTAATGGGAATGT+TGG + chr4.4:76223086-76223105 MS.gene45833:CDS 40.0%
ACCACATTTCGTTGTTGAAG+AGG + chr4.4:76221803-76221822 MS.gene45833:CDS 40.0%
ACCTCTTCAACAACGAAATG+TGG - chr4.4:76221807-76221826 None:intergenic 40.0%
AGAGAACATCCTCATCATTC+TGG + chr4.4:76222490-76222509 MS.gene45833:intron 40.0%
AGATGTATCCTTTGTTCGAG+AGG + chr4.4:76223883-76223902 MS.gene45833:intron 40.0%
AGGATTGAAGCAAAGGGAAA+GGG + chr4.4:76219899-76219918 MS.gene45833:intron 40.0%
AGGTCAATGGCTGATGATAA+CGG + chr4.4:76222798-76222817 MS.gene45833:CDS 40.0%
ATAACTAGAACTGGACGTAC+GGG + chr4.4:76223410-76223429 MS.gene45833:intron 40.0%
ATGCTCAACCGTCTTTGTAT+AGG + chr4.4:76221505-76221524 MS.gene45833:intron 40.0%
CAGCAAATGACTACAGAAAG+AGG - chr4.4:76221481-76221500 None:intergenic 40.0%
CATTATAGTTGTGAAGCCTG+AGG - chr4.4:76220240-76220259 None:intergenic 40.0%
CCAAATCTGAACAAGTCGAT+TGG + chr4.4:76220133-76220152 MS.gene45833:CDS 40.0%
CCATAAAAGCCTTTGAGCTT+CGG - chr4.4:76221678-76221697 None:intergenic 40.0%
CGAGGATATTAAGGATCTTG+AGG + chr4.4:76223167-76223186 MS.gene45833:CDS 40.0%
CTCAGGCTTCACAACTATAA+TGG + chr4.4:76220238-76220257 MS.gene45833:CDS 40.0%
CTGAACAAGTCGATTGGAAA+TGG + chr4.4:76220139-76220158 MS.gene45833:CDS 40.0%
CTTTGACGAAGAACCTAATC+TGG + chr4.4:76224162-76224181 MS.gene45833:intron 40.0%
GAATCTAGTGTGGATGTGAA+TGG + chr4.4:76222942-76222961 MS.gene45833:CDS 40.0%
GATTACAGATTGTCCTTCAG+TGG + chr4.4:76221267-76221286 MS.gene45833:intron 40.0%
GCAGCAAAATGAATCTAGTG+TGG + chr4.4:76222932-76222951 MS.gene45833:CDS 40.0%
GCGATACGATATGATAAGCA+AGG - chr4.4:76220899-76220918 None:intergenic 40.0%
GTGCAAATACAAACCTCATC+TGG - chr4.4:76223553-76223572 None:intergenic 40.0%
TACACTACTCGACTGTGAAT+GGG - chr4.4:76223945-76223964 None:intergenic 40.0%
TATACAAAGACGGTTGAGCA+TGG - chr4.4:76221506-76221525 None:intergenic 40.0%
TATACATCAGTGTGGAAGCT+TGG + chr4.4:76221444-76221463 MS.gene45833:intron 40.0%
TATATCCCCAAAGTTCCAAG+CGG - chr4.4:76223343-76223362 None:intergenic 40.0%
TCACCTCTTAGCATTCATTC+AGG - chr4.4:76222405-76222424 None:intergenic 40.0%
TCAGAGTATATTTCACCTCG+AGG - chr4.4:76219831-76219850 None:intergenic 40.0%
TCGTTGCTGAGTTTGAAGAA+AGG + chr4.4:76219942-76219961 MS.gene45833:CDS 40.0%
TCTATACTGCTTTGGTCACT+CGG - chr4.4:76221313-76221332 None:intergenic 40.0%
TCTATTGTTGGGGGATGTAA+AGG + chr4.4:76222363-76222382 MS.gene45833:intron 40.0%
TCTCAAAGATGGACATGCAA+GGG - chr4.4:76221712-76221731 None:intergenic 40.0%
TCTCCTGAATGAATGCTAAG+AGG + chr4.4:76222399-76222418 MS.gene45833:intron 40.0%
TCTCCTGGTAATCAATTGAG+TGG + chr4.4:76224300-76224319 MS.gene45833:CDS 40.0%
TGTCATTGTTGCTGAAGTTC+GGG + chr4.4:76223513-76223532 MS.gene45833:CDS 40.0%
TTACACTACTCGACTGTGAA+TGG - chr4.4:76223946-76223965 None:intergenic 40.0%
! AAGCTCAAAGGCTTTTATGG+AGG + chr4.4:76221678-76221697 MS.gene45833:CDS 40.0%
! CAACAAGGAAGTTGCCTTTT+TGG + chr4.4:76223448-76223467 MS.gene45833:intron 40.0%
! GCAAAATCACAGTGTCATTG+TGG - chr4.4:76219727-76219746 None:intergenic 40.0%
! GCTTCACAACTATAATGGGA+AGG + chr4.4:76220243-76220262 MS.gene45833:CDS 40.0%
! GGGTTACAACCAATGTTTTC+TGG + chr4.4:76223044-76223063 MS.gene45833:intron 40.0%
! TGGTTGTGGTTGTAGCTTTA+GGG + chr4.4:76224182-76224201 MS.gene45833:intron 40.0%
! TGTGGATGTGAATGGTGTTA+TGG + chr4.4:76222950-76222969 MS.gene45833:CDS 40.0%
!! AATGGTGTTATGGCTGTGAT+GGG + chr4.4:76222960-76222979 MS.gene45833:CDS 40.0%
!! CCAATCGACTTGTTCAGATT+TGG - chr4.4:76220136-76220155 None:intergenic 40.0%
!! GGTGTAAGGTTAGTTGATGA+AGG + chr4.4:76224321-76224340 MS.gene45833:CDS 40.0%
!! TAATATTGCTGGTCTTCCCA+TGG - chr4.4:76220787-76220806 None:intergenic 40.0%
AAAGCCTTTGAGCTTCGGTA+AGG - chr4.4:76221673-76221692 None:intergenic 45.0%
AAAGCTGCACTTCAAGAGCT+TGG + chr4.4:76222732-76222751 MS.gene45833:CDS 45.0%
AACATCCACGCATCAGACAT+AGG - chr4.4:76223002-76223021 None:intergenic 45.0%
AAGCTACACTCGGTAAGACT+CGG - chr4.4:76219766-76219785 None:intergenic 45.0%
ACAACCACCTGATGGAACAA+TGG - chr4.4:76224281-76224300 None:intergenic 45.0%
ACCTCTTAGAGCTTCTGCTA+TGG + chr4.4:76224398-76224417 MS.gene45833:CDS 45.0%
ACGTGGTCAACAGTAGTCAT+TGG + chr4.4:76223629-76223648 MS.gene45833:intron 45.0%
AGAGTTGCGTGGAGATTTGA+TGG - chr4.4:76220970-76220989 None:intergenic 45.0%
AGGCAACTTTGTGCTTGAGT+TGG + chr4.4:76220078-76220097 MS.gene45833:CDS 45.0%
AGGTCAGAAGTTTGATCTGC+AGG + chr4.4:76222438-76222457 MS.gene45833:intron 45.0%
AGTTAGATCCGCGTTGAGTT+TGG + chr4.4:76219644-76219663 MS.gene45833:intron 45.0%
ATATAGATAGGACCGGTCTC+TGG + chr4.4:76222877-76222896 MS.gene45833:CDS 45.0%
ATGGTGACTCTCACATGTGA+GGG + chr4.4:76223024-76223043 MS.gene45833:intron 45.0%
ATTCATGAGGGCCAACACTT+AGG + chr4.4:76222696-76222715 MS.gene45833:intron 45.0%
ATTTCCTATGGGGAGCTTGA+AGG + chr4.4:76221022-76221041 MS.gene45833:intron 45.0%
CAAATCTCCACGCAACTCTT+CGG + chr4.4:76220971-76220990 MS.gene45833:intron 45.0%
CATATGAACGGAAGAGTTGC+AGG - chr4.4:76222226-76222245 None:intergenic 45.0%
CATGCACACATACTCATGCA+GGG + chr4.4:76223984-76224003 MS.gene45833:CDS 45.0%
CGAAGAACCTAATCTGGTTG+TGG + chr4.4:76224168-76224187 MS.gene45833:intron 45.0%
CTCTCAAAGATGGACATGCA+AGG - chr4.4:76221713-76221732 None:intergenic 45.0%
CTGCAACTCTTCCGTTCATA+TGG + chr4.4:76222224-76222243 MS.gene45833:CDS 45.0%
CTGCATGAGTATGTGTGCAT+GGG - chr4.4:76223985-76224004 None:intergenic 45.0%
CTGGTTGTGGTTGTAGCTTT+AGG + chr4.4:76224181-76224200 MS.gene45833:intron 45.0%
CTTGAAGTCACCCTAAGTGT+TGG - chr4.4:76222710-76222729 None:intergenic 45.0%
GAGGTGATTGTCGAAGGATT+AGG + chr4.4:76222418-76222437 MS.gene45833:intron 45.0%
GCTACAACCACAACCAGATT+AGG - chr4.4:76224178-76224197 None:intergenic 45.0%
GGTCAGAAGTTTGATCTGCA+GGG + chr4.4:76222439-76222458 MS.gene45833:intron 45.0%
GGTTCTTGAAGCAACATCAG+AGG - chr4.4:76221786-76221805 None:intergenic 45.0%
TCTGATGCGTGGATGTTACA+TGG + chr4.4:76223005-76223024 MS.gene45833:CDS 45.0%
TGAGGTTTGTATTTGCACCC+AGG + chr4.4:76223555-76223574 MS.gene45833:intron 45.0%
TGAGTTTGGCGAAATCGCAA+TGG + chr4.4:76219658-76219677 MS.gene45833:intron 45.0%
TGCTAAGAGGTGATTGTCGA+AGG + chr4.4:76222412-76222431 MS.gene45833:intron 45.0%
TGCTGATGTTGTGCAGTTTC+AGG - chr4.4:76222912-76222931 None:intergenic 45.0%
TGTTGCGGTTACAGAGAATG+AGG + chr4.4:76221587-76221606 MS.gene45833:intron 45.0%
TTAGCAGTCTTCCTTGCAGT+CGG - chr4.4:76223271-76223290 None:intergenic 45.0%
TTCATGAGGGCCAACACTTA+GGG + chr4.4:76222697-76222716 MS.gene45833:intron 45.0%
TTCTCCATTGTTCCATCAGG+TGG + chr4.4:76224274-76224293 MS.gene45833:intron 45.0%
TTGCTGAGCTGGTCAAACAA+GGG + chr4.4:76224436-76224455 MS.gene45833:CDS 45.0%
TTTACAAGATCGGTCGTGCA+AGG - chr4.4:76223802-76223821 None:intergenic 45.0%
! AGCTTGGTGGAGATTCAAGA+GGG + chr4.4:76222748-76222767 MS.gene45833:CDS 45.0%
! CAGATTTGGTCGAGGAAAAG+AGG - chr4.4:76220122-76220141 None:intergenic 45.0%
! CCGAAGCTCAAAGGCTTTTA+TGG + chr4.4:76221675-76221694 MS.gene45833:CDS 45.0%
! CCTTGTTGTGATTGAGCCAA+TGG - chr4.4:76223436-76223455 None:intergenic 45.0%
! GACTTGTTCAGATTTGGTCG+AGG - chr4.4:76220130-76220149 None:intergenic 45.0%
! GCCAACATTCCCATTAGTCT+TGG - chr4.4:76223090-76223109 None:intergenic 45.0%
! TTGTGATCGAGGTAGCTTTG+AGG + chr4.4:76222778-76222797 MS.gene45833:CDS 45.0%
!! CAAACAAGGGGTCGATTTTC+CGG + chr4.4:76224449-76224468 MS.gene45833:CDS 45.0%
!! CAACCAATGTTTTCTGGTGG+TGG + chr4.4:76223050-76223069 MS.gene45833:intron 45.0%
!! CCATTGGCTCAATCACAACA+AGG + chr4.4:76223433-76223452 MS.gene45833:intron 45.0%
!! GAATGGTGTTATGGCTGTGA+TGG + chr4.4:76222959-76222978 MS.gene45833:CDS 45.0%
!! TCCATAGCAGAAGCTCTAAG+AGG - chr4.4:76224402-76224421 None:intergenic 45.0%
!! TGATAACGGTGCCGTTGAAT+TGG + chr4.4:76222812-76222831 MS.gene45833:CDS 45.0%
!!! TTTTCTGGTGGTGGACCAAA+GGG + chr4.4:76223059-76223078 MS.gene45833:intron 45.0%
!!! AATAAAAATACTTTTTTAAT+AGG - chr4.4:76220425-76220444 None:intergenic 5.0%
AAGGCCTTACCGAAGCTCAA+AGG + chr4.4:76221666-76221685 MS.gene45833:intron 50.0%
AGAAAGCTTGCAGCCACTGT+TGG + chr4.4:76220210-76220229 MS.gene45833:CDS 50.0%
AGCCACTGTTGGAATTCCTC+AGG + chr4.4:76220221-76220240 MS.gene45833:CDS 50.0%
AGCCTGAGGAATTCCAACAG+TGG - chr4.4:76220226-76220245 None:intergenic 50.0%
AGGCAATTCTCTCCAGAGAC+CGG - chr4.4:76222892-76222911 None:intergenic 50.0%
ATTTCATCCGACCGACTGCA+AGG + chr4.4:76223257-76223276 MS.gene45833:intron 50.0%
CAAACCTCCACGCAACTCTT+CGG + chr4.4:76222254-76222273 MS.gene45833:CDS 50.0%
CAAACTCAGCAACGACCTGA+TGG - chr4.4:76219937-76219956 None:intergenic 50.0%
CACACATACTCATGCAGGGT+AGG + chr4.4:76223988-76224007 MS.gene45833:intron 50.0%
CACAGTCGAGTAGTGTAAGC+TGG + chr4.4:76223948-76223967 MS.gene45833:CDS 50.0%
CATGGTGACTCTCACATGTG+AGG + chr4.4:76223023-76223042 MS.gene45833:intron 50.0%
CCATGCACACATACTCATGC+AGG + chr4.4:76223983-76224002 MS.gene45833:CDS 50.0%
CCTGCATGAGTATGTGTGCA+TGG - chr4.4:76223986-76224005 None:intergenic 50.0%
CGATTTCGCCAAACTCAACG+CGG - chr4.4:76219655-76219674 None:intergenic 50.0%
GACTGCAAGGAAGACTGCTA+AGG + chr4.4:76223270-76223289 MS.gene45833:intron 50.0%
GCTACCTCGATCACAAGTGT+TGG - chr4.4:76222774-76222793 None:intergenic 50.0%
GCTGAAGTTCGGGAAACAAG+CGG + chr4.4:76223523-76223542 MS.gene45833:CDS 50.0%
GCTGCAAGCTTTCTTTGCCA+TGG - chr4.4:76220204-76220223 None:intergenic 50.0%
GGACTTGTCCTCTCGAACAA+AGG - chr4.4:76223894-76223913 None:intergenic 50.0%
GGGAATCCTACAACACCATC+AGG + chr4.4:76219919-76219938 MS.gene45833:CDS 50.0%
GGTCCACCACCAGAAAACAT+TGG - chr4.4:76223056-76223075 None:intergenic 50.0%
GTTGCTGAGCTGGTCAAACA+AGG + chr4.4:76224435-76224454 MS.gene45833:CDS 50.0%
TATGGGGAGCTTGAAGGTGA+AGG + chr4.4:76221028-76221047 MS.gene45833:intron 50.0%
TGAGTATGTGTGCATGGGAG+CGG - chr4.4:76223980-76223999 None:intergenic 50.0%
TGCTGAGCTGGTCAAACAAG+GGG + chr4.4:76224437-76224456 MS.gene45833:CDS 50.0%
TTCACCTTCAAGCTCCCCAT+AGG - chr4.4:76221029-76221048 None:intergenic 50.0%
! AGACTCTAGTGTTGCTGAGC+TGG + chr4.4:76224425-76224444 MS.gene45833:CDS 50.0%
! ATGGGAATGTTGGCTGCACA+TGG + chr4.4:76223096-76223115 MS.gene45833:CDS 50.0%
! GAGCTTGGTGGAGATTCAAG+AGG + chr4.4:76222747-76222766 MS.gene45833:CDS 50.0%
! TCTCTGCCGCTTGGAACTTT+GGG + chr4.4:76223334-76223353 MS.gene45833:intron 50.0%
! TTCTCTGCCGCTTGGAACTT+TGG + chr4.4:76223333-76223352 MS.gene45833:intron 50.0%
!! AAGGGGAGCACCAAGACTAA+TGG + chr4.4:76223077-76223096 MS.gene45833:intron 50.0%
!! AGGGGAGCACCAAGACTAAT+GGG + chr4.4:76223078-76223097 MS.gene45833:intron 50.0%
!! CAACGACCTGATGGTGTTGT+AGG - chr4.4:76219928-76219947 None:intergenic 50.0%
!! CGAGGAAAAGAGGCGTTGAA+TGG - chr4.4:76220112-76220131 None:intergenic 50.0%
!! CGAGGTAGCTTTGAGGTCAA+TGG + chr4.4:76222785-76222804 MS.gene45833:CDS 50.0%
!! GAAGCTCTAAGAGGTGATGC+TGG - chr4.4:76224393-76224412 None:intergenic 50.0%
!! GTTAGTTGATGAAGGGCTGC+TGG + chr4.4:76224329-76224348 MS.gene45833:CDS 50.0%
!! TGATGGGCAGGCAAGTTTTG+AGG + chr4.4:76222976-76222995 MS.gene45833:CDS 50.0%
!! TTAGTCTTGGTGCTCCCCTT+TGG - chr4.4:76223077-76223096 None:intergenic 50.0%
!! TTTCTGGTGGTGGACCAAAG+GGG + chr4.4:76223060-76223079 MS.gene45833:intron 50.0%
!!! GTTTTCTGGTGGTGGACCAA+AGG + chr4.4:76223058-76223077 MS.gene45833:intron 50.0%
AACAAGCGGCAAGCCAGATG+AGG + chr4.4:76223537-76223556 MS.gene45833:CDS 55.0%
ACCAGGAGACAACCACCTGA+TGG - chr4.4:76224289-76224308 None:intergenic 55.0%
AGGGCCAACACTTGTGATCG+AGG + chr4.4:76222767-76222786 MS.gene45833:CDS 55.0%
AGTCGAACCGAAGAGTTGCG+TGG - chr4.4:76222264-76222283 None:intergenic 55.0%
CAGTCTTCCTTGCAGTCGGT+CGG - chr4.4:76223267-76223286 None:intergenic 55.0%
CCAAGCGGCAGAGAACAATG+CGG - chr4.4:76223328-76223347 None:intergenic 55.0%
GCAGCACTTCGATTCTGTGC+CGG - chr4.4:76224471-76224490 None:intergenic 55.0%
GCTGCACTTCAAGAGCTTGG+TGG + chr4.4:76222735-76222754 MS.gene45833:CDS 55.0%
GCTGGCTGCAACTCCACATA+TGG - chr4.4:76224375-76224394 None:intergenic 55.0%
TCCATCAGGTGGTTGTCTCC+TGG + chr4.4:76224285-76224304 MS.gene45833:intron 55.0%
TGAGGCCTATGTCTGATGCG+TGG + chr4.4:76222994-76223013 MS.gene45833:CDS 55.0%
TTGATGAAGGGCTGCTGGCA+AGG + chr4.4:76224334-76224353 MS.gene45833:CDS 55.0%
! CTCTGCCGCTTGGAACTTTG+GGG + chr4.4:76223335-76223354 MS.gene45833:intron 55.0%
!! GTGTTATGGCTGTGATGGGC+AGG + chr4.4:76222964-76222983 MS.gene45833:CDS 55.0%
CCGCATTGTTCTCTGCCGCT+TGG + chr4.4:76223325-76223344 MS.gene45833:intron 60.0%
CGAACCGAAGAGTTGCGTGG+AGG - chr4.4:76220978-76220997 None:intergenic 60.0%
GAACTGGACGTACGGGCCAT+TGG + chr4.4:76223417-76223436 MS.gene45833:intron 60.0%
GGTCGAACCGAAGAGTTGCG+TGG - chr4.4:76220981-76221000 None:intergenic 60.0%
! GGTTGGGGCCGAGTATTGTC+TGG + chr4.4:76224081-76224100 MS.gene45833:intron 60.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 76219513 76224563 76219513 ID=MS.gene45833
chr4.4 mRNA 76219513 76224563 76219513 ID=MS.gene45833.t1;Parent=MS.gene45833
chr4.4 exon 76219513 76219604 76219513 ID=MS.gene45833.t1.exon1;Parent=MS.gene45833.t1
chr4.4 CDS 76219513 76219604 76219513 ID=cds.MS.gene45833.t1;Parent=MS.gene45833.t1
chr4.4 exon 76219901 76219963 76219901 ID=MS.gene45833.t1.exon2;Parent=MS.gene45833.t1
chr4.4 CDS 76219901 76219963 76219901 ID=cds.MS.gene45833.t1;Parent=MS.gene45833.t1
chr4.4 exon 76220072 76220264 76220072 ID=MS.gene45833.t1.exon3;Parent=MS.gene45833.t1
chr4.4 CDS 76220072 76220264 76220072 ID=cds.MS.gene45833.t1;Parent=MS.gene45833.t1
chr4.4 exon 76221669 76221824 76221669 ID=MS.gene45833.t1.exon4;Parent=MS.gene45833.t1
chr4.4 CDS 76221669 76221824 76221669 ID=cds.MS.gene45833.t1;Parent=MS.gene45833.t1
chr4.4 exon 76222215 76222275 76222215 ID=MS.gene45833.t1.exon5;Parent=MS.gene45833.t1
chr4.4 CDS 76222215 76222275 76222215 ID=cds.MS.gene45833.t1;Parent=MS.gene45833.t1
chr4.4 exon 76222730 76223039 76222730 ID=MS.gene45833.t1.exon6;Parent=MS.gene45833.t1
chr4.4 CDS 76222730 76223039 76222730 ID=cds.MS.gene45833.t1;Parent=MS.gene45833.t1
chr4.4 exon 76223080 76223237 76223080 ID=MS.gene45833.t1.exon7;Parent=MS.gene45833.t1
chr4.4 CDS 76223080 76223237 76223080 ID=cds.MS.gene45833.t1;Parent=MS.gene45833.t1
chr4.4 exon 76223455 76223558 76223455 ID=MS.gene45833.t1.exon8;Parent=MS.gene45833.t1
chr4.4 CDS 76223455 76223558 76223455 ID=cds.MS.gene45833.t1;Parent=MS.gene45833.t1
chr4.4 exon 76223905 76224005 76223905 ID=MS.gene45833.t1.exon9;Parent=MS.gene45833.t1
chr4.4 CDS 76223905 76224005 76223905 ID=cds.MS.gene45833.t1;Parent=MS.gene45833.t1
chr4.4 exon 76224293 76224563 76224293 ID=MS.gene45833.t1.exon10;Parent=MS.gene45833.t1
chr4.4 CDS 76224293 76224563 76224293 ID=cds.MS.gene45833.t1;Parent=MS.gene45833.t1
Gene Sequence

>MS.gene45833

ATGACTAGTCTTACACGTTCTACTTCTCTCCATGAGAGATTTGATGAATCTCTCACCGCTCACATGAATGAAATTTTGGCACTTTTGTCAAGGTACTGCTCAAAATTCTCTCCTTGTTTTTTTGCATATTTAGTTAGATCCGCGTTGAGTTTGGCGAAATCGCAATGGCACTGTGATTTGTTAAAGTTATCTACTGTAGTGTTTGCAAAAACCACAATGACACTGTGATTTTGCTAAAGTTACAGTCTTACCGAGTCTTACCGAGTGTAGCTTTTTCCAAAGTCATGGTGACACATTGTGATTCTGTCAAATTTACCTCGAGGTGAAATATACTCTGAGATTGTTGTAAAGATTTAAATTAACATTCAAAATCTCATGGTGTTAAAAGGATTGAAGCAAAGGGAAAGGGAATCCTACAACACCATCAGGTCGTTGCTGAGTTTGAAGAAAGGTAATGATTTTTGACATTCAATTCCTCTTGATTTTTTCTGCAATGGAGATAGTATGTTTTGTTATGTTATTAGTAGAACCTAACATGTTTCATTAACTCTTAATGTAGTTCTAAAGGCAACTTTGTGCTTGAGTTGGACTTTGAACCATTCAACGCCTCTTTTCCTCGACCAAATCTGAACAAGTCGATTGGAAATGGCGTCGAGTTCTTCAATCGCCATCTTTCTGCTAAACTTTTCCATGGCAAAGAAAGCTTGCAGCCACTGTTGGAATTCCTCAGGCTTCACAACTATAATGGGAAGGTATTTTTGATATACTTATTTGAAGCCATGCCATCAGATATTAATAATGTTTGTTATCTACTTTGATTTTGAGTATAATCAATCTAGTTAAGCCTAGCATGTTCTTCTAAGATAATTTATAACGTTGAGCCTTCAAATCTAATCATATTCTTTTAAGCCTATTAAAAAAGTATTTTTATTTTTTATTTTTTTACTTTTTCAATATGCTTAGAAGAACATGTTAGCCTACAATACATATCATCTAGAGCCTTCAATAGGAACTGTGAGCTTCATATTGTGTTCTTTCTCTTTCTCTACTTTTTCAACTCATCTCAGTAGCCTTTGATTTTTAAGAGATAGGATTATGGCTGTTTCTTGTATATATGATGATTGCTTTAGTATTCATATTTTTCTAATTTATTTAACCATTATGTGTGACTTAAGTTCTGTTGATGAACAATTAATTATTGATTAAGATGATAACTAAGTATAAATAGTTCTAAAATATAAATATAACGGACTTGACAACAAGTTTAGATACCATGGGAAGACCAGCAATATTACTGTTTCTTCACATTCATACCATGATTCATGCTACTTGTTTAACTTGGAATGTATGAGTTTTAATCATAATCAAAACGATGTTTATAAACCTTGCTTATCATATCGTATCGCCATTATTACACAGAAACTCTTCATGCAACTCATGCGTTCACATGTATACCATCAAATCTCCACGCAACTCTTCGGTTCGACCGTAATTTCCTTGATTAATTACATTTCCTATGGGGAGCTTGAAGGTGAAGGTTAACTCGCTTGAAGCAATCATTACAACAGAGGAAAATGGGATGACAATCAACATACTACTATGTTCAACTTGAAAACTTTGATCGTGTGGGACTGTGCAAATATTGAGTACTTATTTTTGTCTACCATGGTTGGAAGTTTTAAAAACCTTAGACAACTGGAAATTAAGAATTGTCGTTCAATGGAGGAGATAATAGCTAAAGAATTGTCGTTACAGATTACAGATTGTCCTTCAGTGGAAGAGATATTCAAATTGACTCCGAGTGACCAAAGCAGTATAGAAGATATGACTAAGTTGAAATATGTTTTTTTAGAAACATTACCAAAGCTAAAAAATATATGGAGTATGGATCCTAATGGAGTTCTGCATTTTCATGATCTAGAAGAACTACATATACATCAGTGTGGAAGCTTGGAGCATGTACTTCCTCTTTCTGTAGTCATTTGCTGCTCCATGCTCAACCGTCTTTGTATAGGTGATTGCAAGGAAATTTTTGCAAGCTCAATCGTCTTTGTATAGGTGATTGCAAGGAAATTGTTGCGGTTACAGAGAATGAGGATTTTATATTTATATCTCAACAATTTGAATTGAATGCCTTGAGCACTCTAACTTTTAAGGCCTTACCGAAGCTCAAAGGCTTTTATGGAGGAAATCACACCCTTGCATGTCCATCTTTGAGAGTGATGACTGTTTTAGGCTGTGCTAAGTTGACTGTATTTAAAACTCAGGAGCCTCTGATGTTGCTTCAAGAACCACATTTCGTTGTTGAAGAGGTATGTATCATAAATATTAACATATGATAACAATTTTCTTGAAAAGAACACATGTTTTGGGCTTTCAGTATTCAAATTTTTTTAATTTATTTAACCATTACTGTGTGACTTAAGTTTTGTTGATGAACAATTAATTATTGATTATGATGATAAACTTGTATAAATAGTTCTAAAATATAAATAAAATGGACTTTACAACATGTTTTGATACTATGGGAATCCCAACTATATCACTGTTTCTTCACATTCATACCATGATTTTTAAATGCTACTTGTTCAACTTTGAATGTGTGGGTTTTAATCATAATCAAATGTGTGGGTTTTAATCATAATCAAAACAATGTTTAGAAACCTTGCTTATCAGATTATATCACCTTTTGTATTATACAGAAACTCTTCCTGCAACTCTTCCGTTCATATGGATATCGACAAACCTCCACGCAACTCTTCGGTTCGACTGTGATTTCCTTGATTAATTACATTTCTTTGGAAAGTTTGCCAAACCATAATAACTTTCCAGTAAATGTCGCATTAACTTTCTATTGTTGGGGGATGTAAAGGTAACTGAATGTTCTCTCCTGAATGAATGCTAAGAGGTGATTGTCGAAGGATTAGGTCAGAAGTTTGATCTGCAGGGTCTTGATGCTAGATAAATAGTTTAAAATAGAGAACATCCTCATCATTCTGGATGATATATGTAACTACTCACAATAAACCAGAATAAGAAACCGACAAAATAAATGTTTTTATTGAAAATTGGCGCACAAAATTTTACCTTCAGACTTGAACCTCAAGTTGTGAAAAAGAAATCTTTGGGTGCACCCATTTTCAATAATAACTCTTTATTTTTTAAACTTATCAACAATTTGAAATTCATGAGGGCCAACACTTAGGGTGACTTCAAGACAAAGCTGCACTTCAAGAGCTTGGTGGAGATTCAAGAGGGCCAACACTTGTGATCGAGGTAGCTTTGAGGTCAATGGCTGATGATAACGGTGCCGTTGAATTGGAAGAGTTTGTTGTAAGTGGGAAGTCAAGAATTGTGGTTTTGAATATAGATAGGACCGGTCTCTGGAGAGAATTGCCTGAAACTGCACAACATCAGCAGCAGCAAAATGAATCTAGTGTGGATGTGAATGGTGTTATGGCTGTGATGGGCAGGCAAGTTTTGAGGCCTATGTCTGATGCGTGGATGTTACATGGTGACTCTCACATGTGAGGGTTACAACCAATGTTTTCTGGTGGTGGACCAAAGGGGAGCACCAAGACTAATGGGAATGTTGGCTGCACATGGTGTTATAGATTCCATTGATGTGATGCCATATAAACCAAAAACATATGACGAGGATATTAAGGATCTTGAGGCTTTACTAAATAAGAGATTGTTTAGGGAGATGCAAAAATCTAAAACTGGTGGGGAACTTTTGTATTTATTTCATCCGACCGACTGCAAGGAAGACTGCTAAGGTTCAAATTCAATGCTTACTGCTTACGTGTACACCGCATTGTTCTCTGCCGCTTGGAACTTTGGGGATATAAATGTGTTAAGGAGATCATTTGGGTGAAAACAAATTAGTTTCGGCAAATAACTAGAACTGGACGTACGGGCCATTGGCTCAATCACAACAAGGAAGTTGCCTTTTTGGAATAAAGGGTAGTCCAGAAATAAACAGAAACCTTGACACTGATGTCATTGTTGCTGAAGTTCGGGAAACAAGCGGCAAGCCAGATGAGGTTTGTATTTGCACCCAGGTTTTTACTTTTTATAGTTAATGTCCTTCAATGCTTTGCCTAACTTTGAAAAACGTGGTCAACAGTAGTCATTGGTAATGTATCTATAATTAGGTTTCATCTTTATCCAAAAAAATTGTTTTACATTATAATAAACTCGGCCAAGACAAAACGAACTTACTAAAAGCCATTCACATGTATATTTTTTTTTTCACTTTTCGTCTCCACATTTGTGATTGTTAACCTTGCACGACCGATCTTGTAAATAGTTTAATTAAGCTTGGTAATAATGTTTTTCTACCATTTGAGTATTTGAATTTAAATCTCAGATGTATCCTTTGTTCGAGAGGACAAGTCCAAAAACAAGAAAGCTGGAATTGTTTGCTCCCATTCACAGTCGAGTAGTGTAAGCTGGAATTGTCCGCTCCCATGCACACATACTCATGCAGGGTAGGTTTTCAATTCTCATGACTGGTATATTATTTTGAGTTCTTTCCTTTGTATTCTTAAAAGTTAAAATAGTTTGGTTGGGGCCGAGTATTGTCTGGATTTGAAATGAATATTGATGTATGTAAGCAAGCTCACTTAATAATGCGTTTTTGATTTCTTTGACGAAGAACCTAATCTGGTTGTGGTTGTAGCTTTAGGGCAGAAAAAATCATCTATAGGCATAGAAATCTGAAGCTGTTTTTTGAGGTGTTCTTTATTATTGATTATATTCTCCATTGTTCCATCAGGTGGTTGTCTCCTGGTAATCAATTGAGTGGTGTAAGGTTAGTTGATGAAGGGCTGCTGGCAAGGTTTAAAGCAGCTTATCCATATGTGGAGTTGCAGCCAGCATCACCTCTTAGAGCTTCTGCTATGGAAGTAGACTCTAGTGTTGCTGAGCTGGTCAAACAAGGGGTCGATTTTCCGGCACAGAATCGAAGTGCTGCATTCAAGTTGTTCTTGAGAGCTATATTTATTTTAATGTTTTCACATGGTTATCAGTGCTGCATGACACGTTGA

Protein sequence

>MS.gene45833.t1

MTSLTRSTSLHERFDESLTAHMNEILALLSRIEAKGKGILQHHQVVAEFEESSKGNFVLELDFEPFNASFPRPNLNKSIGNGVEFFNRHLSAKLFHGKESLQPLLEFLRLHNYNGKALPKLKGFYGGNHTLACPSLRVMTVLGCAKLTVFKTQEPLMLLQEPHFVVEEKLFLQLFRSYGYRQTSTQLFDKAALQELGGDSRGPTLVIEVALRSMADDNGAVELEEFVVSGKSRIVVLNIDRTGLWRELPETAQHQQQQNESSVDVNGVMAVMGRQVLRPMSDAWMLHGDSHMGAPRLMGMLAAHGVIDSIDVMPYKPKTYDEDIKDLEALLNKRLFREMQKSKTGSCLFGIKGSPEINRNLDTDVIVAEVRETSGKPDEDKSKNKKAGIVCSHSQSSSVSWNCPLPCTHTHAGWLSPGNQLSGVRLVDEGLLARFKAAYPYVELQPASPLRASAMEVDSSVAELVKQGVDFPAQNRSAAFKLFLRAIFILMFSHGYQCCMTR