Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46054.t1 | XP_003623196.1 | 93.8 | 224 | 14 | 0 | 1 | 224 | 1 | 224 | 1.60E-116 | 428.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46054.t1 | P32110 | 70.2 | 225 | 66 | 1 | 1 | 224 | 1 | 225 | 1.1e-87 | 324.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46054.t1 | G7L6H0 | 93.8 | 224 | 14 | 0 | 1 | 224 | 1 | 224 | 1.2e-116 | 428.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055147 | MS.gene46054 | 0.933942 | 8.68E-96 | -1.69E-46 |
| MS.gene055148 | MS.gene46054 | 0.947765 | 3.56E-106 | -1.69E-46 |
| MS.gene055149 | MS.gene46054 | 0.844107 | 9.28E-59 | -1.69E-46 |
| MS.gene05808 | MS.gene46054 | 0.807186 | 5.72E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46054.t1 | MTR_7g065600 | 93.750 | 224 | 14 | 0 | 1 | 224 | 1 | 224 | 2.43e-157 | 434 |
| MS.gene46054.t1 | MTR_7g065590 | 79.018 | 224 | 47 | 0 | 1 | 224 | 1 | 224 | 5.36e-134 | 375 |
| MS.gene46054.t1 | MTR_7g065290 | 76.339 | 224 | 53 | 0 | 1 | 224 | 1 | 224 | 1.26e-128 | 362 |
| MS.gene46054.t1 | MTR_7g065265 | 73.214 | 224 | 60 | 0 | 1 | 224 | 1 | 224 | 1.81e-122 | 347 |
| MS.gene46054.t1 | MTR_7g065230 | 75.000 | 224 | 51 | 1 | 1 | 224 | 1 | 219 | 7.29e-122 | 345 |
| MS.gene46054.t1 | MTR_7g065270 | 72.768 | 224 | 61 | 0 | 1 | 224 | 1 | 224 | 3.98e-121 | 343 |
| MS.gene46054.t1 | MTR_7g065260 | 75.556 | 225 | 54 | 1 | 1 | 224 | 8 | 232 | 1.43e-115 | 329 |
| MS.gene46054.t1 | MTR_7g065720 | 68.000 | 225 | 71 | 1 | 1 | 224 | 1 | 225 | 3.12e-113 | 323 |
| MS.gene46054.t1 | MTR_7g065660 | 66.368 | 223 | 75 | 0 | 1 | 223 | 1 | 223 | 1.88e-111 | 318 |
| MS.gene46054.t1 | MTR_7g065630 | 66.368 | 223 | 71 | 1 | 1 | 223 | 19 | 237 | 9.80e-107 | 307 |
| MS.gene46054.t1 | MTR_7g065740 | 61.607 | 224 | 85 | 1 | 1 | 223 | 1 | 224 | 1.29e-105 | 304 |
| MS.gene46054.t1 | MTR_4g019790 | 61.435 | 223 | 86 | 0 | 1 | 223 | 1 | 223 | 1.39e-103 | 299 |
| MS.gene46054.t1 | MTR_7g065750 | 62.500 | 224 | 83 | 1 | 1 | 223 | 1 | 224 | 9.88e-103 | 296 |
| MS.gene46054.t1 | MTR_7g065640 | 60.538 | 223 | 70 | 1 | 1 | 223 | 1 | 205 | 1.65e-97 | 283 |
| MS.gene46054.t1 | MTR_7g065710 | 63.285 | 207 | 72 | 1 | 8 | 214 | 5 | 207 | 2.59e-94 | 275 |
| MS.gene46054.t1 | MTR_4g019780 | 60.748 | 214 | 82 | 2 | 3 | 215 | 4 | 216 | 4.32e-92 | 270 |
| MS.gene46054.t1 | MTR_7g065680 | 64.414 | 222 | 75 | 1 | 1 | 222 | 1 | 218 | 6.93e-92 | 269 |
| MS.gene46054.t1 | MTR_7g065700 | 62.617 | 214 | 76 | 1 | 1 | 214 | 1 | 210 | 1.05e-86 | 256 |
| MS.gene46054.t1 | MTR_1g090150 | 45.249 | 221 | 116 | 2 | 5 | 222 | 1 | 219 | 1.55e-65 | 202 |
| MS.gene46054.t1 | MTR_6g080440 | 47.343 | 207 | 107 | 2 | 8 | 213 | 4 | 209 | 9.15e-64 | 197 |
| MS.gene46054.t1 | MTR_8g087425 | 46.330 | 218 | 115 | 2 | 4 | 220 | 2 | 218 | 1.46e-63 | 197 |
| MS.gene46054.t1 | MTR_3g099757 | 49.545 | 220 | 109 | 2 | 5 | 223 | 3 | 221 | 1.61e-63 | 197 |
| MS.gene46054.t1 | MTR_8g087410 | 45.161 | 217 | 116 | 3 | 1 | 216 | 1 | 215 | 2.17e-58 | 184 |
| MS.gene46054.t1 | MTR_1g115195 | 44.601 | 213 | 115 | 2 | 7 | 216 | 3 | 215 | 1.37e-57 | 182 |
| MS.gene46054.t1 | MTR_1g090070 | 43.182 | 220 | 120 | 3 | 8 | 223 | 10 | 228 | 3.32e-57 | 181 |
| MS.gene46054.t1 | MTR_5g040430 | 40.991 | 222 | 123 | 3 | 1 | 215 | 1 | 221 | 6.87e-57 | 180 |
| MS.gene46054.t1 | MTR_5g037380 | 44.091 | 220 | 113 | 3 | 1 | 212 | 1 | 218 | 6.88e-55 | 175 |
| MS.gene46054.t1 | MTR_1g090100 | 42.986 | 221 | 120 | 4 | 7 | 223 | 2 | 220 | 2.10e-54 | 174 |
| MS.gene46054.t1 | MTR_1g090060 | 43.498 | 223 | 116 | 6 | 8 | 224 | 4 | 222 | 9.70e-54 | 172 |
| MS.gene46054.t1 | MTR_4g059730 | 39.906 | 213 | 124 | 2 | 6 | 215 | 3 | 214 | 4.89e-51 | 165 |
| MS.gene46054.t1 | MTR_8g061950 | 42.466 | 219 | 118 | 3 | 5 | 215 | 3 | 221 | 1.12e-50 | 164 |
| MS.gene46054.t1 | MTR_1g090090 | 41.627 | 209 | 116 | 4 | 8 | 212 | 4 | 210 | 3.72e-50 | 163 |
| MS.gene46054.t1 | MTR_2g070200 | 41.000 | 200 | 114 | 3 | 10 | 207 | 7 | 204 | 3.69e-44 | 147 |
| MS.gene46054.t1 | MTR_2g070150 | 39.000 | 200 | 117 | 4 | 10 | 207 | 7 | 203 | 9.88e-43 | 143 |
| MS.gene46054.t1 | MTR_3g467420 | 42.000 | 200 | 111 | 4 | 7 | 204 | 9 | 205 | 1.53e-42 | 143 |
| MS.gene46054.t1 | MTR_2g070130 | 38.614 | 202 | 119 | 4 | 10 | 209 | 7 | 205 | 2.22e-41 | 140 |
| MS.gene46054.t1 | MTR_2g070180 | 38.500 | 200 | 118 | 4 | 10 | 207 | 7 | 203 | 3.60e-41 | 140 |
| MS.gene46054.t1 | MTR_2g070140 | 38.144 | 194 | 115 | 4 | 21 | 212 | 2 | 192 | 1.61e-40 | 137 |
| MS.gene46054.t1 | MTR_4g124130 | 43.229 | 192 | 99 | 6 | 5 | 191 | 2 | 188 | 7.64e-40 | 136 |
| MS.gene46054.t1 | MTR_8g056940 | 42.328 | 189 | 104 | 4 | 6 | 192 | 3 | 188 | 1.82e-39 | 135 |
| MS.gene46054.t1 | MTR_3g467430 | 39.901 | 203 | 117 | 4 | 4 | 204 | 6 | 205 | 5.85e-39 | 134 |
| MS.gene46054.t1 | MTR_2g070210 | 38.647 | 207 | 120 | 5 | 10 | 212 | 7 | 210 | 1.29e-38 | 133 |
| MS.gene46054.t1 | MTR_5g076900 | 38.164 | 207 | 123 | 4 | 3 | 207 | 2 | 205 | 1.92e-38 | 133 |
| MS.gene46054.t1 | MTR_2g070120 | 38.916 | 203 | 117 | 5 | 10 | 209 | 7 | 205 | 9.23e-38 | 131 |
| MS.gene46054.t1 | MTR_2g070070 | 38.579 | 197 | 116 | 4 | 10 | 204 | 7 | 200 | 2.78e-36 | 127 |
| MS.gene46054.t1 | MTR_2g070060 | 37.000 | 200 | 121 | 4 | 10 | 207 | 7 | 203 | 2.21e-35 | 125 |
| MS.gene46054.t1 | MTR_0186s0030 | 44.286 | 140 | 76 | 2 | 6 | 144 | 3 | 141 | 5.96e-31 | 111 |
| MS.gene46054.t1 | MTR_2g070110 | 37.186 | 199 | 119 | 4 | 16 | 212 | 13 | 207 | 6.16e-31 | 113 |
| MS.gene46054.t1 | MTR_2g072120 | 44.615 | 65 | 35 | 1 | 51 | 114 | 2 | 66 | 3.52e-15 | 68.6 |
| MS.gene46054.t1 | MTR_4g134370 | 28.302 | 212 | 128 | 8 | 8 | 204 | 16 | 218 | 6.75e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46054.t1 | AT3G09270 | 49.554 | 224 | 109 | 4 | 3 | 223 | 2 | 224 | 8.66e-75 | 226 |
| MS.gene46054.t1 | AT2G29420 | 48.858 | 219 | 110 | 2 | 3 | 220 | 5 | 222 | 1.07e-72 | 221 |
| MS.gene46054.t1 | AT2G29490 | 47.368 | 209 | 107 | 3 | 1 | 207 | 1 | 208 | 1.81e-59 | 187 |
| MS.gene46054.t1 | AT2G29450 | 42.601 | 223 | 126 | 2 | 3 | 223 | 2 | 224 | 1.21e-55 | 177 |
| MS.gene46054.t1 | AT2G29460 | 43.304 | 224 | 120 | 4 | 1 | 220 | 1 | 221 | 3.68e-55 | 176 |
| MS.gene46054.t1 | AT2G29480 | 44.019 | 209 | 114 | 3 | 1 | 207 | 1 | 208 | 1.14e-53 | 172 |
| MS.gene46054.t1 | AT1G10370 | 44.076 | 211 | 109 | 3 | 1 | 204 | 1 | 209 | 2.64e-52 | 169 |
| MS.gene46054.t1 | AT2G29470 | 43.333 | 210 | 115 | 4 | 1 | 207 | 1 | 209 | 9.35e-52 | 167 |
| MS.gene46054.t1 | AT2G29440 | 40.889 | 225 | 129 | 4 | 1 | 223 | 1 | 223 | 1.90e-51 | 166 |
| MS.gene46054.t1 | AT1G69930 | 38.393 | 224 | 132 | 2 | 2 | 219 | 7 | 230 | 3.88e-51 | 166 |
| MS.gene46054.t1 | AT1G10360 | 41.262 | 206 | 114 | 2 | 6 | 204 | 4 | 209 | 6.94e-50 | 162 |
| MS.gene46054.t1 | AT1G27130 | 40.000 | 225 | 126 | 4 | 1 | 217 | 1 | 224 | 6.39e-49 | 160 |
| MS.gene46054.t1 | AT1G59700 | 43.578 | 218 | 115 | 3 | 5 | 214 | 4 | 221 | 3.29e-48 | 158 |
| MS.gene46054.t1 | AT1G59670 | 42.788 | 208 | 111 | 3 | 5 | 204 | 4 | 211 | 4.78e-48 | 158 |
| MS.gene46054.t1 | AT5G62480 | 40.278 | 216 | 118 | 4 | 10 | 215 | 11 | 225 | 9.86e-46 | 152 |
| MS.gene46054.t1 | AT1G27140 | 38.767 | 227 | 129 | 4 | 1 | 218 | 1 | 226 | 1.44e-44 | 149 |
| MS.gene46054.t1 | AT1G78320 | 41.346 | 208 | 117 | 4 | 5 | 210 | 2 | 206 | 1.55e-44 | 148 |
| MS.gene46054.t1 | AT1G17170 | 40.845 | 213 | 120 | 4 | 10 | 220 | 7 | 215 | 1.68e-44 | 148 |
| MS.gene46054.t1 | AT1G78370 | 40.976 | 205 | 116 | 4 | 10 | 212 | 7 | 208 | 5.20e-44 | 147 |
| MS.gene46054.t1 | AT1G78380 | 40.488 | 205 | 117 | 4 | 10 | 212 | 7 | 208 | 1.54e-43 | 146 |
| MS.gene46054.t1 | AT1G78340 | 40.976 | 205 | 116 | 4 | 10 | 212 | 7 | 208 | 1.34e-42 | 143 |
| MS.gene46054.t1 | AT1G69920 | 37.445 | 227 | 132 | 4 | 1 | 217 | 26 | 252 | 3.27e-42 | 144 |
| MS.gene46054.t1 | AT1G74590 | 33.921 | 227 | 143 | 3 | 1 | 221 | 1 | 226 | 1.78e-41 | 141 |
| MS.gene46054.t1 | AT1G53680 | 38.571 | 210 | 124 | 4 | 1 | 207 | 1 | 208 | 8.81e-41 | 139 |
| MS.gene46054.t1 | AT1G17180 | 38.537 | 205 | 121 | 4 | 10 | 212 | 7 | 208 | 1.20e-39 | 136 |
| MS.gene46054.t1 | AT1G17190 | 38.318 | 214 | 125 | 5 | 1 | 212 | 1 | 209 | 6.74e-38 | 131 |
| MS.gene46054.t1 | AT1G78360 | 38.350 | 206 | 121 | 5 | 10 | 212 | 7 | 209 | 1.29e-37 | 130 |
| MS.gene46054.t1 | AT3G43800 | 35.749 | 207 | 124 | 6 | 4 | 204 | 2 | 205 | 1.34e-35 | 125 |
| MS.gene46054.t1 | AT5G62480 | 32.093 | 215 | 111 | 4 | 10 | 215 | 11 | 199 | 3.17e-28 | 106 |
| MS.gene46054.t1 | AT1G78320 | 34.300 | 207 | 106 | 4 | 5 | 210 | 2 | 179 | 6.11e-28 | 105 |
| MS.gene46054.t1 | AT5G62480 | 32.093 | 215 | 110 | 4 | 10 | 215 | 11 | 198 | 7.17e-28 | 105 |
| MS.gene46054.t1 | AT2G02380 | 29.302 | 215 | 133 | 6 | 5 | 207 | 9 | 216 | 4.47e-17 | 77.4 |
| MS.gene46054.t1 | AT2G02390 | 29.817 | 218 | 132 | 7 | 3 | 207 | 4 | 213 | 1.28e-16 | 75.9 |
| MS.gene46054.t1 | AT2G02390 | 28.889 | 225 | 132 | 8 | 3 | 207 | 4 | 220 | 3.34e-14 | 69.7 |
| MS.gene46054.t1 | AT2G02390 | 41.237 | 97 | 53 | 2 | 3 | 96 | 4 | 99 | 1.09e-13 | 67.4 |
Find 46 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGAGCCTTGGCTCGTTTC+TGG | 0.120947 | 7.2:+42863502 | MS.gene46054:CDS |
| GAGCTTAAGGATAATTTCTT+TGG | 0.282538 | 7.2:+42864684 | MS.gene46054:CDS |
| TAAGGATCAGAAGGCAATAT+TGG | 0.299422 | 7.2:-42863477 | None:intergenic |
| ACAGGAACCTTCTTGTAAAC+AGG | 0.304362 | 7.2:-42863378 | None:intergenic |
| GCCTCCTAGAGAAGGACTTT+TGG | 0.337294 | 7.2:+42864872 | MS.gene46054:CDS |
| AATTCTTGAGAATGAGCTTA+AGG | 0.354197 | 7.2:+42864671 | MS.gene46054:CDS |
| TTCTTTGGTGGAGAGGAGAT+TGG | 0.368042 | 7.2:+42864699 | MS.gene46054:CDS |
| GGCAATTTATCCTTAACAAC+TGG | 0.375316 | 7.2:-42864852 | None:intergenic |
| TTGACTCCATTTGTAAAGCT+TGG | 0.384299 | 7.2:-42864814 | None:intergenic |
| CACCAACCATCCAGTTGTTA+AGG | 0.388600 | 7.2:+42864842 | MS.gene46054:CDS |
| TGACTCCATTTGTAAAGCTT+GGG | 0.390868 | 7.2:-42864813 | None:intergenic |
| TTTGTTGCTTCTTCTACAAT+GGG | 0.398586 | 7.2:-42864762 | None:intergenic |
| GTTTGTTGCTTCTTCTACAA+TGG | 0.416463 | 7.2:-42864763 | None:intergenic |
| TGCTAAGATGGCATCAAATC+AGG | 0.416653 | 7.2:+42863218 | None:intergenic |
| TACAAATATGAGTTAGAAAA+GGG | 0.419037 | 7.2:+42863321 | MS.gene46054:CDS |
| ATCACAAGGGATTCTGATAT+AGG | 0.433145 | 7.2:-42863420 | None:intergenic |
| GACCAAGTTCATAGATGATA+AGG | 0.434027 | 7.2:+42863524 | MS.gene46054:CDS |
| ATCTCCACCCTGCTCACAAA+TGG | 0.436953 | 7.2:-42863273 | None:intergenic |
| ATACAAATATGAGTTAGAAA+AGG | 0.446746 | 7.2:+42863320 | MS.gene46054:CDS |
| CTTAAGGATAATTTCTTTGG+TGG | 0.454634 | 7.2:+42864687 | MS.gene46054:CDS |
| GGAGATTGCTCTAACATTGA+AGG | 0.460355 | 7.2:+42863290 | MS.gene46054:CDS |
| AATTTCCCAAGCTTTACAAA+TGG | 0.474830 | 7.2:+42864808 | MS.gene46054:CDS |
| TACCTTATCATCTATGAACT+TGG | 0.479710 | 7.2:-42863526 | None:intergenic |
| ATCCTTAACAACTGGATGGT+TGG | 0.488666 | 7.2:-42864844 | None:intergenic |
| TTATCATTATGAACTAATAC+AGG | 0.517988 | 7.2:-42863396 | None:intergenic |
| GGATAATTTCTTTGGTGGAG+AGG | 0.526031 | 7.2:+42864692 | MS.gene46054:CDS |
| GATAAATTGCCTCCTAGAGA+AGG | 0.547220 | 7.2:+42864864 | MS.gene46054:CDS |
| TGATCCTTACAAAAGAGCCT+TGG | 0.548089 | 7.2:+42863491 | MS.gene46054:CDS |
| TGGCAAGTCCATTTGTGAGC+AGG | 0.549506 | 7.2:+42863265 | MS.gene46054:CDS |
| TTGAGTATGTCGATGAGACC+TGG | 0.549849 | 7.2:+42863445 | MS.gene46054:CDS |
| TAAGCCAAAAGTCCTTCTCT+AGG | 0.550201 | 7.2:-42864876 | None:intergenic |
| CAGGAACCTTCTTGTAAACA+GGG | 0.551890 | 7.2:-42863377 | None:intergenic |
| AGAACGTGAGAAAGCTATTG+AGG | 0.557970 | 7.2:+42864629 | MS.gene46054:CDS |
| ATTTATCCTTAACAACTGGA+TGG | 0.561475 | 7.2:-42864848 | None:intergenic |
| AATATGAGTTAGAAAAGGGA+GGG | 0.564400 | 7.2:+42863325 | MS.gene46054:CDS |
| ATACAACCCTGTTTACAAGA+AGG | 0.566628 | 7.2:+42863371 | MS.gene46054:CDS |
| GGCAAGTCCATTTGTGAGCA+GGG | 0.574715 | 7.2:+42863266 | MS.gene46054:CDS |
| AAATATGAGTTAGAAAAGGG+AGG | 0.578650 | 7.2:+42863324 | MS.gene46054:CDS |
| GAGATTGCTCTAACATTGAA+GGG | 0.597295 | 7.2:+42863291 | MS.gene46054:CDS |
| CGACATACTCAAGAATCACA+AGG | 0.607291 | 7.2:-42863434 | None:intergenic |
| GCCAAAAGTCCTTCTCTAGG+AGG | 0.619286 | 7.2:-42864873 | None:intergenic |
| ACCAGTGTTTAAGTGCTGCA+CGG | 0.628510 | 7.2:+42864580 | MS.gene46054:intron |
| CTTGGTCCAGAAACGAGCCA+AGG | 0.682377 | 7.2:-42863508 | None:intergenic |
| TTGTTGCTTCTTCTACAATG+GGG | 0.682817 | 7.2:-42864761 | None:intergenic |
| GACATACTCAAGAATCACAA+GGG | 0.702786 | 7.2:-42863433 | None:intergenic |
| AAGTCCATTTGTGAGCAGGG+TGG | 0.747804 | 7.2:+42863269 | MS.gene46054:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAGTTTTCATTTTTAAATTA+CGG | + | chr7.2:42863953-42863972 | MS.gene46054:intron | 10.0% |
| !!! | TTGATTTCTTTTTAAAATTA+CGG | + | chr7.2:42864051-42864070 | MS.gene46054:intron | 10.0% |
| !! | AATAAATATGATATTTGAAG+TGG | - | chr7.2:42864283-42864302 | None:intergenic | 15.0% |
| !! | AATATTTAAGAAGAATAATC+TGG | + | chr7.2:42864446-42864465 | MS.gene46054:intron | 15.0% |
| !! | ATACAAATATGAGTTAGAAA+AGG | + | chr7.2:42863320-42863339 | MS.gene46054:CDS | 20.0% |
| !! | ATGACTATTATATATGTTTG+TGG | + | chr7.2:42864321-42864340 | MS.gene46054:intron | 20.0% |
| !! | TACAAATATGAGTTAGAAAA+GGG | + | chr7.2:42863321-42863340 | MS.gene46054:CDS | 20.0% |
| !! | TTATCATTATGAACTAATAC+AGG | - | chr7.2:42863399-42863418 | None:intergenic | 20.0% |
| !!! | ACACTGGTTTTAAAAAATTA+AGG | - | chr7.2:42864568-42864587 | None:intergenic | 20.0% |
| ! | ACACTGTATATTATATGTAG+GGG | - | chr7.2:42863674-42863693 | None:intergenic | 25.0% |
| ! | AGAGAAAAACATAATACATG+TGG | + | chr7.2:42863840-42863859 | MS.gene46054:intron | 25.0% |
| ! | GACACTGTATATTATATGTA+GGG | - | chr7.2:42863675-42863694 | None:intergenic | 25.0% |
| ! | TAAAATATTTCACAAGCATG+TGG | + | chr7.2:42863760-42863779 | MS.gene46054:intron | 25.0% |
| !! | GTATTATGTTTTTCTCTATG+CGG | - | chr7.2:42863837-42863856 | None:intergenic | 25.0% |
| AAATACCACAAACTTCACTA+AGG | + | chr7.2:42863885-42863904 | MS.gene46054:intron | 30.0% | |
| AAATATGAGTTAGAAAAGGG+AGG | + | chr7.2:42863324-42863343 | MS.gene46054:CDS | 30.0% | |
| AATACCACAAACTTCACTAA+GGG | + | chr7.2:42863886-42863905 | MS.gene46054:intron | 30.0% | |
| AATATGAGTTAGAAAAGGGA+GGG | + | chr7.2:42863325-42863344 | MS.gene46054:CDS | 30.0% | |
| AATTCTTGAGAATGAGCTTA+AGG | + | chr7.2:42864671-42864690 | MS.gene46054:CDS | 30.0% | |
| AATTTCCCAAGCTTTACAAA+TGG | + | chr7.2:42864808-42864827 | MS.gene46054:CDS | 30.0% | |
| ACCTCACTTATACACTTTAA+AGG | - | chr7.2:42863631-42863650 | None:intergenic | 30.0% | |
| ATTTATCCTTAACAACTGGA+TGG | - | chr7.2:42864851-42864870 | None:intergenic | 30.0% | |
| CTTAAGGATAATTTCTTTGG+TGG | + | chr7.2:42864687-42864706 | MS.gene46054:CDS | 30.0% | |
| GAGCTTAAGGATAATTTCTT+TGG | + | chr7.2:42864684-42864703 | MS.gene46054:CDS | 30.0% | |
| GGACACTGTATATTATATGT+AGG | - | chr7.2:42863676-42863695 | None:intergenic | 30.0% | |
| TACCTTATCATCTATGAACT+TGG | - | chr7.2:42863529-42863548 | None:intergenic | 30.0% | |
| TGTATATTATATGTAGGGGT+CGG | - | chr7.2:42863670-42863689 | None:intergenic | 30.0% | |
| ! | TGAGATATAATGACTTGTGA+CGG | - | chr7.2:42864403-42864422 | None:intergenic | 30.0% |
| ! | TTTGTTGCTTCTTCTACAAT+GGG | - | chr7.2:42864765-42864784 | None:intergenic | 30.0% |
| !! | ACCTTTAAAGTGTATAAGTG+AGG | + | chr7.2:42863627-42863646 | MS.gene46054:intron | 30.0% |
| !! | CAATATTGGATTTTGTTTCC+AGG | - | chr7.2:42863466-42863485 | None:intergenic | 30.0% |
| !! | CAGGAAAATTTGAAGCTTTT+TGG | + | chr7.2:42863237-42863256 | MS.gene46054:CDS | 30.0% |
| !!! | TTTGAAGCTTTTTGGAATGA+TGG | + | chr7.2:42863245-42863264 | MS.gene46054:CDS | 30.0% |
| ATACAACCCTGTTTACAAGA+AGG | + | chr7.2:42863371-42863390 | MS.gene46054:CDS | 35.0% | |
| ATACGCTAGAGAGACATTTA+GGG | - | chr7.2:42864246-42864265 | None:intergenic | 35.0% | |
| ATATTTCACAAGCATGTGGA+TGG | + | chr7.2:42863764-42863783 | MS.gene46054:intron | 35.0% | |
| ATCACAAGGGATTCTGATAT+AGG | - | chr7.2:42863423-42863442 | None:intergenic | 35.0% | |
| CTCATAGTCATTCATGTTCT+TGG | + | chr7.2:42864347-42864366 | MS.gene46054:intron | 35.0% | |
| GAAATACGTTCATGTGATCT+CGG | - | chr7.2:42863711-42863730 | None:intergenic | 35.0% | |
| GACATACTCAAGAATCACAA+GGG | - | chr7.2:42863436-42863455 | None:intergenic | 35.0% | |
| GACCAAGTTCATAGATGATA+AGG | + | chr7.2:42863524-42863543 | MS.gene46054:CDS | 35.0% | |
| GAGATTGCTCTAACATTGAA+GGG | + | chr7.2:42863291-42863310 | MS.gene46054:CDS | 35.0% | |
| GGCAATTTATCCTTAACAAC+TGG | - | chr7.2:42864855-42864874 | None:intergenic | 35.0% | |
| TAAGGATCAGAAGGCAATAT+TGG | - | chr7.2:42863480-42863499 | None:intergenic | 35.0% | |
| TATACGCTAGAGAGACATTT+AGG | - | chr7.2:42864247-42864266 | None:intergenic | 35.0% | |
| TGACTCCATTTGTAAAGCTT+GGG | - | chr7.2:42864816-42864835 | None:intergenic | 35.0% | |
| TTGACTCCATTTGTAAAGCT+TGG | - | chr7.2:42864817-42864836 | None:intergenic | 35.0% | |
| ! | ATTTGAAGTGGTTCTCAATG+TGG | - | chr7.2:42864271-42864290 | None:intergenic | 35.0% |
| ! | GTTTGTTGCTTCTTCTACAA+TGG | - | chr7.2:42864766-42864785 | None:intergenic | 35.0% |
| ! | TCTTTATTTGTGCACATGTG+TGG | + | chr7.2:42863736-42863755 | MS.gene46054:intron | 35.0% |
| ! | TTGTTGCTTCTTCTACAATG+GGG | - | chr7.2:42864764-42864783 | None:intergenic | 35.0% |
| !! | TATAATGACTTGTGACGGAT+TGG | - | chr7.2:42864398-42864417 | None:intergenic | 35.0% |
| ACAGGAACCTTCTTGTAAAC+AGG | - | chr7.2:42863381-42863400 | None:intergenic | 40.0% | |
| AGAACGTGAGAAAGCTATTG+AGG | + | chr7.2:42864629-42864648 | MS.gene46054:CDS | 40.0% | |
| ATCCTTAACAACTGGATGGT+TGG | - | chr7.2:42864847-42864866 | None:intergenic | 40.0% | |
| CAGGAACCTTCTTGTAAACA+GGG | - | chr7.2:42863380-42863399 | None:intergenic | 40.0% | |
| CGACATACTCAAGAATCACA+AGG | - | chr7.2:42863437-42863456 | None:intergenic | 40.0% | |
| GATAAATTGCCTCCTAGAGA+AGG | + | chr7.2:42864864-42864883 | MS.gene46054:CDS | 40.0% | |
| GGAGATTGCTCTAACATTGA+AGG | + | chr7.2:42863290-42863309 | MS.gene46054:CDS | 40.0% | |
| GGATAATTTCTTTGGTGGAG+AGG | + | chr7.2:42864692-42864711 | MS.gene46054:CDS | 40.0% | |
| TAAGCCAAAAGTCCTTCTCT+AGG | - | chr7.2:42864879-42864898 | None:intergenic | 40.0% | |
| TGATCCTTACAAAAGAGCCT+TGG | + | chr7.2:42863491-42863510 | MS.gene46054:CDS | 40.0% | |
| TGTGTTTGGATGGAGGATTT+AGG | + | chr7.2:42863909-42863928 | MS.gene46054:intron | 40.0% | |
| TGTGTTTGGATTGAGGGTTT+AGG | - | chr7.2:42864223-42864242 | None:intergenic | 40.0% | |
| TTAGGGTGTGTTTGGATTGA+GGG | - | chr7.2:42864229-42864248 | None:intergenic | 40.0% | |
| TTTGGATGGAGGATTTAGGA+GGG | + | chr7.2:42863913-42863932 | MS.gene46054:intron | 40.0% | |
| TTTGGATTGAGGGTTTAGGA+GGG | - | chr7.2:42864219-42864238 | None:intergenic | 40.0% | |
| ! | AACTTCACTAAGGGTGTGTT+TGG | + | chr7.2:42863895-42863914 | MS.gene46054:intron | 40.0% |
| ! | AGAGACATTTAGGGTGTGTT+TGG | - | chr7.2:42864237-42864256 | None:intergenic | 40.0% |
| ! | CTGCAGTCTTCATAGCTTTT+TGG | + | chr7.2:42864736-42864755 | MS.gene46054:CDS | 40.0% |
| ! | GCTCTTTTGTAAGGATCAGA+AGG | - | chr7.2:42863489-42863508 | None:intergenic | 40.0% |
| ! | TTTAGGGTGTGTTTGGATTG+AGG | - | chr7.2:42864230-42864249 | None:intergenic | 40.0% |
| CACACCCTTAGTGAAGTTTG+TGG | - | chr7.2:42863893-42863912 | None:intergenic | 45.0% | |
| CACCAACCATCCAGTTGTTA+AGG | + | chr7.2:42864842-42864861 | MS.gene46054:CDS | 45.0% | |
| GTTTGGATGGAGGATTTAGG+AGG | + | chr7.2:42863912-42863931 | MS.gene46054:intron | 45.0% | |
| GTTTGGATTGAGGGTTTAGG+AGG | - | chr7.2:42864220-42864239 | None:intergenic | 45.0% | |
| TCATGTGATCTCGGTTCAGT+TGG | - | chr7.2:42863702-42863721 | None:intergenic | 45.0% | |
| TTCTTTGGTGGAGAGGAGAT+TGG | + | chr7.2:42864699-42864718 | MS.gene46054:CDS | 45.0% | |
| TTGAGTATGTCGATGAGACC+TGG | + | chr7.2:42863445-42863464 | MS.gene46054:CDS | 45.0% | |
| TTGGATGGAGGATTTAGGAG+GGG | + | chr7.2:42863914-42863933 | MS.gene46054:intron | 45.0% | |
| TTGGATTGAGGGTTTAGGAG+GGG | - | chr7.2:42864218-42864237 | None:intergenic | 45.0% | |
| ! | ACCAGTGTTTAAGTGCTGCA+CGG | + | chr7.2:42864580-42864599 | MS.gene46054:intron | 45.0% |
| ! | TCACTAAGGGTGTGTTTGGA+TGG | + | chr7.2:42863899-42863918 | MS.gene46054:intron | 45.0% |
| ! | TGATCTCGGTTCAGTTGGTA+GGG | - | chr7.2:42863697-42863716 | None:intergenic | 45.0% |
| !!! | TAGTTTTTATTTTTAAATTA+CGG | - | chr7.2:42864179-42864198 | None:intergenic | 5.0% |
| AAGTCCATTTGTGAGCAGGG+TGG | + | chr7.2:42863269-42863288 | MS.gene46054:CDS | 50.0% | |
| ATCTCCACCCTGCTCACAAA+TGG | - | chr7.2:42863276-42863295 | None:intergenic | 50.0% | |
| ATGGAGGATTTAGGAGGGGA+AGG | + | chr7.2:42863918-42863937 | MS.gene46054:intron | 50.0% | |
| GCCAAAAGTCCTTCTCTAGG+AGG | - | chr7.2:42864876-42864895 | None:intergenic | 50.0% | |
| GGCAAGTCCATTTGTGAGCA+GGG | + | chr7.2:42863266-42863285 | MS.gene46054:CDS | 50.0% | |
| GTGATCTCGGTTCAGTTGGT+AGG | - | chr7.2:42863698-42863717 | None:intergenic | 50.0% | |
| TCCGTGCAGCACTTAAACAC+TGG | - | chr7.2:42864584-42864603 | None:intergenic | 50.0% | |
| TGGAGGATTTAGGAGGGGAA+GGG | + | chr7.2:42863919-42863938 | MS.gene46054:intron | 50.0% | |
| TGGCAAGTCCATTTGTGAGC+AGG | + | chr7.2:42863265-42863284 | MS.gene46054:CDS | 50.0% | |
| ! | AAAGAGCCTTGGCTCGTTTC+TGG | + | chr7.2:42863502-42863521 | MS.gene46054:CDS | 50.0% |
| ! | CGAGCCAAGGCTCTTTTGTA+AGG | - | chr7.2:42863498-42863517 | None:intergenic | 50.0% |
| ! | CTAAGGGTGTGTTTGGATGG+AGG | + | chr7.2:42863902-42863921 | MS.gene46054:intron | 50.0% |
| ! | GCCTCCTAGAGAAGGACTTT+TGG | + | chr7.2:42864872-42864891 | MS.gene46054:CDS | 50.0% |
| AGGATTTAGGAGGGGAAGGG+AGG | + | chr7.2:42863922-42863941 | MS.gene46054:intron | 55.0% | |
| AGGGGTCGGAGTTCGAACTT+CGG | - | chr7.2:42863656-42863675 | None:intergenic | 55.0% | |
| ATTGAGGGTTTAGGAGGGGC+AGG | - | chr7.2:42864214-42864233 | None:intergenic | 55.0% | |
| CTTGGTCCAGAAACGAGCCA+AGG | - | chr7.2:42863511-42863530 | None:intergenic | 55.0% | |
| GATTTAGGAGGGGAAGGGAG+GGG | + | chr7.2:42863924-42863943 | MS.gene46054:intron | 55.0% | |
| GGATTTAGGAGGGGAAGGGA+GGG | + | chr7.2:42863923-42863942 | MS.gene46054:intron | 55.0% | |
| TTGAGGGTTTAGGAGGGGCA+GGG | - | chr7.2:42864213-42864232 | None:intergenic | 55.0% | |
| GGTTTAGGAGGGGCAGGGAG+AGG | - | chr7.2:42864208-42864227 | None:intergenic | 65.0% | |
| TAGGAGGGGAAGGGAGGGGA+GGG | + | chr7.2:42863928-42863947 | MS.gene46054:intron | 65.0% | |
| TAGGAGGGGCAGGGAGAGGA+GGG | - | chr7.2:42864204-42864223 | None:intergenic | 65.0% | |
| TTAGGAGGGGAAGGGAGGGG+AGG | + | chr7.2:42863927-42863946 | MS.gene46054:intron | 65.0% | |
| TTAGGAGGGGCAGGGAGAGG+AGG | - | chr7.2:42864205-42864224 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 42863225 | 42864938 | 42863225 | ID=MS.gene46054 |
| chr7.2 | mRNA | 42863225 | 42864938 | 42863225 | ID=MS.gene46054.t1;Parent=MS.gene46054 |
| chr7.2 | exon | 42863225 | 42863545 | 42863225 | ID=MS.gene46054.t1.exon1;Parent=MS.gene46054.t1 |
| chr7.2 | CDS | 42863225 | 42863545 | 42863225 | ID=cds.MS.gene46054.t1;Parent=MS.gene46054.t1 |
| chr7.2 | exon | 42864585 | 42864938 | 42864585 | ID=MS.gene46054.t1.exon2;Parent=MS.gene46054.t1 |
| chr7.2 | CDS | 42864585 | 42864938 | 42864585 | ID=cds.MS.gene46054.t1;Parent=MS.gene46054.t1 |
| Gene Sequence |
| Protein sequence |
