Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46174.t1 | XP_013448876.1 | 97.3 | 301 | 8 | 0 | 1 | 301 | 1 | 301 | 5.00E-169 | 603.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46174.t1 | Q09893 | 39.5 | 129 | 74 | 3 | 18 | 143 | 8 | 135 | 1.4e-15 | 85.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46174.t1 | I3S857 | 97.3 | 301 | 8 | 0 | 1 | 301 | 1 | 301 | 3.6e-169 | 603.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055276 | MS.gene46174 | 0.890166 | 1.26E-73 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene006477 | MS.gene46174 | PPI |
| MS.gene80067 | MS.gene46174 | PPI |
| MS.gene26907 | MS.gene46174 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46174.t1 | MTR_7g062150 | 97.342 | 301 | 8 | 0 | 1 | 301 | 1 | 301 | 0.0 | 613 |
| MS.gene46174.t1 | MTR_4g021800 | 84.488 | 303 | 38 | 4 | 1 | 301 | 1 | 296 | 0.0 | 505 |
| MS.gene46174.t1 | MTR_7g062150 | 96.522 | 230 | 8 | 0 | 1 | 230 | 1 | 230 | 1.83e-169 | 469 |
| MS.gene46174.t1 | MTR_4g021825 | 73.841 | 302 | 76 | 2 | 1 | 301 | 25 | 324 | 4.91e-162 | 454 |
| MS.gene46174.t1 | MTR_4g021800 | 86.047 | 258 | 28 | 3 | 45 | 301 | 1 | 251 | 1.48e-156 | 437 |
| MS.gene46174.t1 | MTR_4g021800 | 83.621 | 232 | 32 | 3 | 1 | 230 | 1 | 228 | 2.43e-135 | 382 |
| MS.gene46174.t1 | MTR_2g097520 | 55.592 | 304 | 119 | 4 | 1 | 301 | 1 | 291 | 8.03e-113 | 328 |
| MS.gene46174.t1 | MTR_4g064380 | 54.636 | 302 | 115 | 4 | 1 | 301 | 1 | 281 | 1.05e-111 | 325 |
| MS.gene46174.t1 | MTR_1g085570 | 48.197 | 305 | 106 | 3 | 1 | 301 | 1 | 257 | 1.18e-98 | 291 |
| MS.gene46174.t1 | MTR_1g085570 | 50.347 | 288 | 95 | 2 | 14 | 301 | 10 | 249 | 2.14e-98 | 290 |
| MS.gene46174.t1 | MTR_1g085570 | 50.173 | 289 | 95 | 3 | 14 | 301 | 10 | 250 | 1.58e-96 | 285 |
| MS.gene46174.t1 | MTR_1g085570 | 50.209 | 239 | 71 | 2 | 14 | 252 | 10 | 200 | 2.66e-79 | 240 |
| MS.gene46174.t1 | MTR_1g104610 | 45.018 | 271 | 105 | 2 | 15 | 283 | 10 | 238 | 8.13e-78 | 238 |
| MS.gene46174.t1 | MTR_1g104610 | 47.059 | 238 | 84 | 1 | 15 | 252 | 10 | 205 | 1.41e-69 | 216 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46174.t1 | AT5G02230 | 68.874 | 302 | 71 | 2 | 1 | 301 | 1 | 280 | 2.79e-143 | 405 |
| MS.gene46174.t1 | AT5G02230 | 68.874 | 302 | 71 | 2 | 1 | 301 | 1 | 280 | 2.79e-143 | 405 |
| MS.gene46174.t1 | AT5G02230 | 68.874 | 302 | 71 | 2 | 1 | 301 | 38 | 317 | 5.76e-143 | 405 |
| MS.gene46174.t1 | AT5G59480 | 56.522 | 299 | 109 | 3 | 1 | 297 | 1 | 280 | 2.05e-118 | 342 |
| MS.gene46174.t1 | AT5G59480 | 56.522 | 299 | 109 | 3 | 1 | 297 | 1 | 280 | 2.05e-118 | 342 |
| MS.gene46174.t1 | AT5G59480 | 56.522 | 299 | 109 | 3 | 1 | 297 | 1 | 280 | 2.05e-118 | 342 |
| MS.gene46174.t1 | AT5G59480 | 56.522 | 299 | 109 | 3 | 1 | 297 | 1 | 280 | 2.05e-118 | 342 |
| MS.gene46174.t1 | AT5G59480 | 56.522 | 299 | 108 | 4 | 1 | 297 | 1 | 279 | 3.29e-116 | 336 |
| MS.gene46174.t1 | AT5G59490 | 54.153 | 301 | 97 | 4 | 6 | 301 | 2 | 266 | 1.13e-102 | 301 |
| MS.gene46174.t1 | AT3G62040 | 51.538 | 260 | 75 | 5 | 45 | 301 | 1 | 212 | 4.37e-83 | 249 |
| MS.gene46174.t1 | AT2G32150 | 46.617 | 266 | 101 | 3 | 16 | 281 | 7 | 231 | 3.50e-82 | 249 |
| MS.gene46174.t1 | AT5G59490 | 55.061 | 247 | 75 | 3 | 6 | 252 | 2 | 212 | 8.18e-81 | 244 |
| MS.gene46174.t1 | AT2G32150 | 47.257 | 237 | 84 | 3 | 16 | 252 | 7 | 202 | 8.13e-69 | 213 |
| MS.gene46174.t1 | AT2G32150 | 46.083 | 217 | 76 | 3 | 16 | 232 | 7 | 182 | 1.85e-60 | 191 |
Find 62 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAACAACTATGGCTGGTTTA+AGG | 0.158157 | 7.2:-40132918 | MS.gene46174:CDS |
| TCTGAAGGTTTGCAAATAAT+TGG | 0.185854 | 7.2:+40131944 | None:intergenic |
| GACCAATAATGTCAAATATT+TGG | 0.190129 | 7.2:+40132008 | None:intergenic |
| TTCCAAATATTTGACATTAT+TGG | 0.211448 | 7.2:-40132010 | MS.gene46174:CDS |
| AAATATGACTGTCTTCTATT+TGG | 0.212208 | 7.2:-40133286 | MS.gene46174:intron |
| CCATTGATTAATAGATTATA+TGG | 0.220325 | 7.2:-40133007 | MS.gene46174:intron |
| TCTTGCTAAGCCTCCCTTAT+AGG | 0.226837 | 7.2:-40132485 | MS.gene46174:CDS |
| GAGAGGCAGTGCCAGAATTA+TGG | 0.244343 | 7.2:-40131031 | MS.gene46174:CDS |
| AAACTTACTAGTTTCCTATA+AGG | 0.248483 | 7.2:+40132471 | None:intergenic |
| ATTTCAGATTCCCATAATTC+TGG | 0.252639 | 7.2:+40131020 | None:intergenic |
| TTGCAAATAATTGGTGTCTT+TGG | 0.268860 | 7.2:+40131953 | None:intergenic |
| AGCAAGAGGTTCCTTAGAAT+TGG | 0.290543 | 7.2:+40132501 | None:intergenic |
| GGTAAATCACAGAGAATTAA+AGG | 0.311037 | 7.2:-40131089 | MS.gene46174:CDS |
| GCATGTGGACAAAATATTAA+AGG | 0.327206 | 7.2:-40133126 | MS.gene46174:intron |
| TGAAGCCAGACCCAATTCTA+AGG | 0.354368 | 7.2:-40132512 | MS.gene46174:CDS |
| AACAACTATGGCTGGTTTAA+GGG | 0.377629 | 7.2:-40132917 | MS.gene46174:intron |
| AGAGGCAGTGCCAGAATTAT+GGG | 0.383627 | 7.2:-40131030 | MS.gene46174:CDS |
| ATTCTGGCACTGCCTCTCTA+AGG | 0.393934 | 7.2:+40131036 | None:intergenic |
| AACTTACTAGTTTCCTATAA+GGG | 0.397060 | 7.2:+40132472 | None:intergenic |
| GTCTCCACAGCAAGCTTGTT+AGG | 0.401994 | 7.2:+40130978 | None:intergenic |
| GCAAGAGGTTCCTTAGAATT+GGG | 0.408266 | 7.2:+40132502 | None:intergenic |
| GAAGATGATATTGAGTTTGT+AGG | 0.416183 | 7.2:-40132076 | MS.gene46174:CDS |
| GTCTTTGGCAACACTTCACT+TGG | 0.416899 | 7.2:+40131968 | None:intergenic |
| AAGGTTGTGGATGCTTTCTA+AGG | 0.423337 | 7.2:+40131055 | None:intergenic |
| TTTGCAATACCACAGCTTAG+TGG | 0.425245 | 7.2:+40133150 | None:intergenic |
| TGGCAACACTTCACTTGGAT+TGG | 0.430282 | 7.2:+40131973 | None:intergenic |
| TTACAGTTCTTTGTGGGTCA+AGG | 0.439532 | 7.2:+40131888 | None:intergenic |
| TCTGGCTTCAAATTCTCATA+TGG | 0.444951 | 7.2:+40132525 | None:intergenic |
| ATGCAGTTAAGGCACTAAAC+AGG | 0.445452 | 7.2:-40132180 | MS.gene46174:CDS |
| AGGTTCCTTAGAATTGGGTC+TGG | 0.448378 | 7.2:+40132507 | None:intergenic |
| AACTATGGAACAACTATGGC+TGG | 0.456420 | 7.2:-40132925 | MS.gene46174:CDS |
| AGACAAAGTTCATGCAGTTA+AGG | 0.463592 | 7.2:-40132191 | MS.gene46174:CDS |
| ACTAGTACTTGTGGTATGAT+TGG | 0.466261 | 7.2:+40132042 | None:intergenic |
| TCTGAAATTAAATCAGAAGT+TGG | 0.466334 | 7.2:-40131005 | MS.gene46174:CDS |
| AGAAACACTGTTCTTGTGGA+TGG | 0.473227 | 7.2:+40132105 | None:intergenic |
| GATTATATGGTTGAGAAGCT+TGG | 0.473494 | 7.2:-40132994 | MS.gene46174:CDS |
| GCACTGCCTCTCTAAGGTTG+TGG | 0.491454 | 7.2:+40131042 | None:intergenic |
| AGTTCTTTGTGGGTCAAGGT+TGG | 0.501936 | 7.2:+40131892 | None:intergenic |
| GGAGACATCTGTGACTGCTT+AGG | 0.506170 | 7.2:-40130961 | None:intergenic |
| TGCATGAACTTTGTCTGCAT+TGG | 0.507933 | 7.2:+40132198 | None:intergenic |
| CATCAGAAACACTGTTCTTG+TGG | 0.523606 | 7.2:+40132101 | None:intergenic |
| GAAACACTGTTCTTGTGGAT+GGG | 0.532461 | 7.2:+40132106 | None:intergenic |
| GTTAAGGCACTAAACAGGCT+TGG | 0.537369 | 7.2:-40132175 | MS.gene46174:CDS |
| AGTGCAAGAAACATACAAGC+TGG | 0.549461 | 7.2:-40131264 | MS.gene46174:CDS |
| TTCAGAATATGCCATTGAGT+TGG | 0.553585 | 7.2:-40131927 | MS.gene46174:CDS |
| AACTCAATGGCATATTCTGA+AGG | 0.569551 | 7.2:+40131929 | None:intergenic |
| TATCTTGAGAGCCAACTCAA+TGG | 0.573981 | 7.2:+40131916 | None:intergenic |
| TGTGGGACTTGACACTGTGC+TGG | 0.591732 | 7.2:-40131235 | MS.gene46174:intron |
| TTATCCTAACAAGCTTGCTG+TGG | 0.609017 | 7.2:-40130982 | MS.gene46174:CDS |
| TTGACTATGATGAATATCAC+AGG | 0.610280 | 7.2:-40132703 | MS.gene46174:intron |
| TTACTAGTTTCCTATAAGGG+AGG | 0.612508 | 7.2:+40132475 | None:intergenic |
| GTGCAAGAAACATACAAGCT+GGG | 0.613254 | 7.2:-40131263 | MS.gene46174:CDS |
| TATAAGGGAGGCTTAGCAAG+AGG | 0.623743 | 7.2:+40132487 | None:intergenic |
| GTTACTACCACTAGTACTTG+TGG | 0.630315 | 7.2:+40132033 | None:intergenic |
| CATACAAGCTGGGAAACGTG+TGG | 0.635233 | 7.2:-40131253 | MS.gene46174:CDS |
| CTGCTTGAAATGGAGTACGA+GGG | 0.637705 | 7.2:-40133334 | None:intergenic |
| ATACAAGCTGGGAAACGTGT+GGG | 0.639764 | 7.2:-40131252 | MS.gene46174:CDS |
| AATCATACCACAAGTACTAG+TGG | 0.639846 | 7.2:-40132040 | MS.gene46174:CDS |
| TCTGCTTGAAATGGAGTACG+AGG | 0.655487 | 7.2:-40133335 | None:intergenic |
| ACTTTGTATCCACTAAGCTG+TGG | 0.665300 | 7.2:-40133159 | MS.gene46174:CDS |
| AAGCATCCACAACCTTAGAG+AGG | 0.675174 | 7.2:-40131048 | MS.gene46174:CDS |
| TGTGGTATTGCAAAAGCATG+TGG | 0.705500 | 7.2:-40133141 | MS.gene46174:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAAAATATATAATTTTTA+GGG | + | chr7.2:40132742-40132761 | None:intergenic | 0.0% |
| !!! | TTAAAAAATATATAATTTTT+AGG | + | chr7.2:40132743-40132762 | None:intergenic | 0.0% |
| !!! | TTATAATATAATTTTTTTTT+TGG | + | chr7.2:40131963-40131982 | None:intergenic | 0.0% |
| !! | ATAATGACAAAAAAATAATT+AGG | + | chr7.2:40132977-40132996 | None:intergenic | 10.0% |
| !! | TTATAATATTTATACACTTT+AGG | + | chr7.2:40131873-40131892 | None:intergenic | 10.0% |
| !! | ATAACATAATGTCAATAATT+TGG | + | chr7.2:40133119-40133138 | None:intergenic | 15.0% |
| !!! | ACAACTTATGTTTTTTTTTT+TGG | - | chr7.2:40131536-40131555 | MS.gene46174:intron | 15.0% |
| !!! | TTTTTTTTTTTGGTCAATTT+AGG | - | chr7.2:40131546-40131565 | MS.gene46174:intron | 15.0% |
| !! | AAAAAAAACTACACAACAAA+CGG | - | chr7.2:40132783-40132802 | MS.gene46174:intron | 20.0% |
| !! | AAGTGTGATTACAATATTAA+AGG | + | chr7.2:40132845-40132864 | None:intergenic | 20.0% |
| !! | AATCAAAAATTACGACTTTA+AGG | - | chr7.2:40132462-40132481 | MS.gene46174:intron | 20.0% |
| !! | ATCAAAAATTACGACTTTAA+GGG | - | chr7.2:40132463-40132482 | MS.gene46174:intron | 20.0% |
| !! | CCATATAATCTATTAATCAA+TGG | + | chr7.2:40131283-40131302 | None:intergenic | 20.0% |
| !! | TATATAACAAATGTTAGCAA+TGG | + | chr7.2:40133082-40133101 | None:intergenic | 20.0% |
| !! | TGTAACAATCAAATAATTAG+AGG | + | chr7.2:40133160-40133179 | None:intergenic | 20.0% |
| !! | TTCCAAATATTTGACATTAT+TGG | - | chr7.2:40132277-40132296 | MS.gene46174:intron | 20.0% |
| !!! | ATTTTAATGATGAGTGTATT+AGG | + | chr7.2:40132434-40132453 | None:intergenic | 20.0% |
| !!! | CCATTGATTAATAGATTATA+TGG | - | chr7.2:40131280-40131299 | MS.gene46174:CDS | 20.0% |
| !!! | TGTTAATAGTTTGTAACAAA+CGG | + | chr7.2:40132490-40132509 | None:intergenic | 20.0% |
| !!! | TTTCAATTTGAAACAAACAA+AGG | - | chr7.2:40132711-40132730 | MS.gene46174:CDS | 20.0% |
| ! | AAAAATTAAGCTGAAATCAC+AGG | - | chr7.2:40131507-40131526 | MS.gene46174:intron | 25.0% |
| ! | AAATATGACTGTCTTCTATT+TGG | - | chr7.2:40131001-40131020 | MS.gene46174:CDS | 25.0% |
| ! | AACCATCTTTACAAAAACTA+TGG | - | chr7.2:40131347-40131366 | MS.gene46174:intron | 25.0% |
| ! | ATTGTAATCACACTTAAATG+TGG | - | chr7.2:40132850-40132869 | MS.gene46174:intron | 25.0% |
| ! | CACATTACTAAGAACATTAT+TGG | + | chr7.2:40131201-40131220 | None:intergenic | 25.0% |
| ! | GACCAATAATGTCAAATATT+TGG | + | chr7.2:40132282-40132301 | None:intergenic | 25.0% |
| ! | TAGAAGTGATGTAGTATAAA+AGG | + | chr7.2:40131631-40131650 | None:intergenic | 25.0% |
| ! | TGTTACACATCATTGTATAT+AGG | - | chr7.2:40133173-40133192 | MS.gene46174:CDS | 25.0% |
| ! | TTTAGTCTCTAACATCATAA+TGG | + | chr7.2:40131936-40131955 | None:intergenic | 25.0% |
| !! | AAACTTACTAGTTTCCTATA+AGG | + | chr7.2:40131819-40131838 | None:intergenic | 25.0% |
| !! | AACTTACTAGTTTCCTATAA+GGG | + | chr7.2:40131818-40131837 | None:intergenic | 25.0% |
| !! | ATAGTTTTTGTAAAGATGGT+TGG | + | chr7.2:40131348-40131367 | None:intergenic | 25.0% |
| !! | TCATTTTCAGTTATTCTTTG+AGG | - | chr7.2:40132998-40133017 | MS.gene46174:intron | 25.0% |
| !! | TCTGAAATTAAATCAGAAGT+TGG | - | chr7.2:40133282-40133301 | MS.gene46174:intron | 25.0% |
| !! | TTCCATAGTTTTTGTAAAGA+TGG | + | chr7.2:40131352-40131371 | None:intergenic | 25.0% |
| !!! | TGTTAATACAGTTTTGTTCA+TGG | - | chr7.2:40131732-40131751 | MS.gene46174:intron | 25.0% |
| ACACATCATTGTATATAGGT+TGG | - | chr7.2:40133177-40133196 | MS.gene46174:intron | 30.0% | |
| ACCTAAAAATTTAATGTCCG+CGG | - | chr7.2:40132915-40132934 | MS.gene46174:intron | 30.0% | |
| AGGTATTAAATTTGAGAGTG+TGG | + | chr7.2:40131853-40131872 | None:intergenic | 30.0% | |
| ATAGGCAAAACACAATAAAG+AGG | + | chr7.2:40132060-40132079 | None:intergenic | 30.0% | |
| ATTAGAGGCTCATATTTGTT+TGG | + | chr7.2:40133145-40133164 | None:intergenic | 30.0% | |
| ATTTAAGCTGAAATTGTCGA+TGG | - | chr7.2:40131426-40131445 | MS.gene46174:intron | 30.0% | |
| ATTTCAGATTCCCATAATTC+TGG | + | chr7.2:40133270-40133289 | None:intergenic | 30.0% | |
| CAAAAACTATGGAACAACTA+TGG | - | chr7.2:40131358-40131377 | MS.gene46174:intron | 30.0% | |
| GAAGATGATATTGAGTTTGT+AGG | - | chr7.2:40132211-40132230 | MS.gene46174:intron | 30.0% | |
| GCATGTGGACAAAATATTAA+AGG | - | chr7.2:40131161-40131180 | MS.gene46174:intron | 30.0% | |
| GGTAAATCACAGAGAATTAA+AGG | - | chr7.2:40133198-40133217 | MS.gene46174:intron | 30.0% | |
| TCTGAAGGTTTGCAAATAAT+TGG | + | chr7.2:40132346-40132365 | None:intergenic | 30.0% | |
| TGGTACATACAAAACAACAT+TGG | + | chr7.2:40131263-40131282 | None:intergenic | 30.0% | |
| TTGACTATGATGAATATCAC+AGG | - | chr7.2:40131584-40131603 | MS.gene46174:intron | 30.0% | |
| TTTAAGCTGAAATTGTCGAT+GGG | - | chr7.2:40131427-40131446 | MS.gene46174:intron | 30.0% | |
| TTTGATGCATGTAATTGTGT+TGG | - | chr7.2:40131231-40131250 | MS.gene46174:intron | 30.0% | |
| ! | GTTTTCTTACAGTTCTTTGT+GGG | + | chr7.2:40132408-40132427 | None:intergenic | 30.0% |
| ! | TGTTTTCTTACAGTTCTTTG+TGG | + | chr7.2:40132409-40132428 | None:intergenic | 30.0% |
| ! | TTGCAAATAATTGGTGTCTT+TGG | + | chr7.2:40132337-40132356 | None:intergenic | 30.0% |
| ! | TTTTGGTCAATTTAGGCAAT+TGG | - | chr7.2:40131553-40131572 | MS.gene46174:intron | 30.0% |
| !! | TTTTAGGTCATTGTGAATGT+AGG | + | chr7.2:40132903-40132922 | None:intergenic | 30.0% |
| AACTCAATGGCATATTCTGA+AGG | + | chr7.2:40132361-40132380 | None:intergenic | 35.0% | |
| AATCATACCACAAGTACTAG+TGG | - | chr7.2:40132247-40132266 | MS.gene46174:intron | 35.0% | |
| ACTAGTACTTGTGGTATGAT+TGG | + | chr7.2:40132248-40132267 | None:intergenic | 35.0% | |
| AGACAAAGTTCATGCAGTTA+AGG | - | chr7.2:40132096-40132115 | MS.gene46174:CDS | 35.0% | |
| GATTATATGGTTGAGAAGCT+TGG | - | chr7.2:40131293-40131312 | MS.gene46174:intron | 35.0% | |
| TTCAGAATATGCCATTGAGT+TGG | - | chr7.2:40132360-40132379 | MS.gene46174:intron | 35.0% | |
| ! | TCTGGCTTCAAATTCTCATA+TGG | + | chr7.2:40131765-40131784 | None:intergenic | 35.0% |
| ! | TTACTAGTTTCCTATAAGGG+AGG | + | chr7.2:40131815-40131834 | None:intergenic | 35.0% |
| !! | AACAACTATGGCTGGTTTAA+GGG | - | chr7.2:40131370-40131389 | MS.gene46174:intron | 35.0% |
| !!! | GGACTAGAAGATTGTTTTGA+AGG | - | chr7.2:40132133-40132152 | MS.gene46174:CDS | 35.0% |
| AACTATGGAACAACTATGGC+TGG | - | chr7.2:40131362-40131381 | MS.gene46174:intron | 40.0% | |
| AAGGTTGTGGATGCTTTCTA+AGG | + | chr7.2:40133235-40133254 | None:intergenic | 40.0% | |
| ACTTTGTATCCACTAAGCTG+TGG | - | chr7.2:40131128-40131147 | MS.gene46174:intron | 40.0% | |
| AGAAACACTGTTCTTGTGGA+TGG | + | chr7.2:40132185-40132204 | None:intergenic | 40.0% | |
| AGCAAGAGGTTCCTTAGAAT+TGG | + | chr7.2:40131789-40131808 | None:intergenic | 40.0% | |
| AGTGCAAGAAACATACAAGC+TGG | - | chr7.2:40133023-40133042 | MS.gene46174:intron | 40.0% | |
| CATCAGAAACACTGTTCTTG+TGG | + | chr7.2:40132189-40132208 | None:intergenic | 40.0% | |
| GAAACACTGTTCTTGTGGAT+GGG | + | chr7.2:40132184-40132203 | None:intergenic | 40.0% | |
| GCAAGAGGTTCCTTAGAATT+GGG | + | chr7.2:40131788-40131807 | None:intergenic | 40.0% | |
| GTGCAAGAAACATACAAGCT+GGG | - | chr7.2:40133024-40133043 | MS.gene46174:intron | 40.0% | |
| GTTACTACCACTAGTACTTG+TGG | + | chr7.2:40132257-40132276 | None:intergenic | 40.0% | |
| TATCTTGAGAGCCAACTCAA+TGG | + | chr7.2:40132374-40132393 | None:intergenic | 40.0% | |
| TGCATGAACTTTGTCTGCAT+TGG | + | chr7.2:40132092-40132111 | None:intergenic | 40.0% | |
| TTACAGTTCTTTGTGGGTCA+AGG | + | chr7.2:40132402-40132421 | None:intergenic | 40.0% | |
| TTTGCAATACCACAGCTTAG+TGG | + | chr7.2:40131140-40131159 | None:intergenic | 40.0% | |
| ! | ATGCAGTTAAGGCACTAAAC+AGG | - | chr7.2:40132107-40132126 | MS.gene46174:CDS | 40.0% |
| ! | CTGCATTGGTGAAGATCTAT+AGG | + | chr7.2:40132078-40132097 | None:intergenic | 40.0% |
| ! | GCCGCGGACATTAAATTTTT+AGG | + | chr7.2:40132919-40132938 | None:intergenic | 40.0% |
| ! | TGTGGTATTGCAAAAGCATG+TGG | - | chr7.2:40131146-40131165 | MS.gene46174:intron | 40.0% |
| !! | ATCAGTCATCTCGGATTAGT+CGG | - | chr7.2:40131450-40131469 | MS.gene46174:intron | 40.0% |
| !! | GAACAACTATGGCTGGTTTA+AGG | - | chr7.2:40131369-40131388 | MS.gene46174:intron | 40.0% |
| !! | TTATCCTAACAAGCTTGCTG+TGG | - | chr7.2:40133305-40133324 | MS.gene46174:CDS | 40.0% |
| AAAAGTTCGCGACCATGATC+TGG | + | chr7.2:40132941-40132960 | None:intergenic | 45.0% | |
| AAGCATCCACAACCTTAGAG+AGG | - | chr7.2:40133239-40133258 | MS.gene46174:intron | 45.0% | |
| AGAGGCAGTGCCAGAATTAT+GGG | - | chr7.2:40133257-40133276 | MS.gene46174:intron | 45.0% | |
| AGGTTCCTTAGAATTGGGTC+TGG | + | chr7.2:40131783-40131802 | None:intergenic | 45.0% | |
| AGTTCTTTGTGGGTCAAGGT+TGG | + | chr7.2:40132398-40132417 | None:intergenic | 45.0% | |
| ATACAAGCTGGGAAACGTGT+GGG | - | chr7.2:40133035-40133054 | MS.gene46174:intron | 45.0% | |
| GTCTTTGGCAACACTTCACT+TGG | + | chr7.2:40132322-40132341 | None:intergenic | 45.0% | |
| TATAAGGGAGGCTTAGCAAG+AGG | + | chr7.2:40131803-40131822 | None:intergenic | 45.0% | |
| TCTTGCTAAGCCTCCCTTAT+AGG | - | chr7.2:40131802-40131821 | MS.gene46174:intron | 45.0% | |
| TGAAGCCAGACCCAATTCTA+AGG | - | chr7.2:40131775-40131794 | MS.gene46174:intron | 45.0% | |
| TGGCAACACTTCACTTGGAT+TGG | + | chr7.2:40132317-40132336 | None:intergenic | 45.0% | |
| ! | GTTAAGGCACTAAACAGGCT+TGG | - | chr7.2:40132112-40132131 | MS.gene46174:CDS | 45.0% |
| !!! | AAAAAATATATAATTTTTAG+GGG | + | chr7.2:40132741-40132760 | None:intergenic | 5.0% |
| ATTCTGGCACTGCCTCTCTA+AGG | + | chr7.2:40133254-40133273 | None:intergenic | 50.0% | |
| CATACAAGCTGGGAAACGTG+TGG | - | chr7.2:40133034-40133053 | MS.gene46174:intron | 50.0% | |
| GAGAGGCAGTGCCAGAATTA+TGG | - | chr7.2:40133256-40133275 | MS.gene46174:intron | 50.0% | |
| GTAGGCAACACTGCATTACG+AGG | + | chr7.2:40132885-40132904 | None:intergenic | 50.0% | |
| GTCGATGGGATCAGTCATCT+CGG | - | chr7.2:40131441-40131460 | MS.gene46174:intron | 50.0% | |
| ! | GTCTCCACAGCAAGCTTGTT+AGG | + | chr7.2:40133312-40133331 | None:intergenic | 50.0% |
| TAATGTCCGCGGCCAGATCA+TGG | - | chr7.2:40132926-40132945 | MS.gene46174:CDS | 55.0% | |
| TGTGGGACTTGACACTGTGC+TGG | - | chr7.2:40133052-40133071 | MS.gene46174:intron | 55.0% | |
| !! | GCACTGCCTCTCTAAGGTTG+TGG | + | chr7.2:40133248-40133267 | None:intergenic | 55.0% |
| TCGCGACCATGATCTGGCCG+CGG | + | chr7.2:40132935-40132954 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 40130962 | 40133347 | 40130962 | ID=MS.gene46174 |
| chr7.2 | mRNA | 40130962 | 40133347 | 40130962 | ID=MS.gene46174.t1;Parent=MS.gene46174 |
| chr7.2 | exon | 40133287 | 40133347 | 40133287 | ID=MS.gene46174.t1.exon1;Parent=MS.gene46174.t1 |
| chr7.2 | CDS | 40133287 | 40133347 | 40133287 | ID=cds.MS.gene46174.t1;Parent=MS.gene46174.t1 |
| chr7.2 | exon | 40133127 | 40133192 | 40133127 | ID=MS.gene46174.t1.exon2;Parent=MS.gene46174.t1 |
| chr7.2 | CDS | 40133127 | 40133192 | 40133127 | ID=cds.MS.gene46174.t1;Parent=MS.gene46174.t1 |
| chr7.2 | exon | 40132918 | 40133015 | 40132918 | ID=MS.gene46174.t1.exon3;Parent=MS.gene46174.t1 |
| chr7.2 | CDS | 40132918 | 40133015 | 40132918 | ID=cds.MS.gene46174.t1;Parent=MS.gene46174.t1 |
| chr7.2 | exon | 40132704 | 40132741 | 40132704 | ID=MS.gene46174.t1.exon4;Parent=MS.gene46174.t1 |
| chr7.2 | CDS | 40132704 | 40132741 | 40132704 | ID=cds.MS.gene46174.t1;Parent=MS.gene46174.t1 |
| chr7.2 | exon | 40132479 | 40132566 | 40132479 | ID=MS.gene46174.t1.exon5;Parent=MS.gene46174.t1 |
| chr7.2 | CDS | 40132479 | 40132566 | 40132479 | ID=cds.MS.gene46174.t1;Parent=MS.gene46174.t1 |
| chr7.2 | exon | 40131892 | 40132227 | 40131892 | ID=MS.gene46174.t1.exon6;Parent=MS.gene46174.t1 |
| chr7.2 | CDS | 40131892 | 40132227 | 40131892 | ID=cds.MS.gene46174.t1;Parent=MS.gene46174.t1 |
| chr7.2 | exon | 40131236 | 40131301 | 40131236 | ID=MS.gene46174.t1.exon7;Parent=MS.gene46174.t1 |
| chr7.2 | CDS | 40131236 | 40131301 | 40131236 | ID=cds.MS.gene46174.t1;Parent=MS.gene46174.t1 |
| chr7.2 | exon | 40130962 | 40131114 | 40130962 | ID=MS.gene46174.t1.exon8;Parent=MS.gene46174.t1 |
| chr7.2 | CDS | 40130962 | 40131114 | 40130962 | ID=cds.MS.gene46174.t1;Parent=MS.gene46174.t1 |
| Gene Sequence |
| Protein sequence |
