Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055276.t1 | XP_013448876.1 | 96.7 | 301 | 10 | 0 | 1 | 301 | 1 | 301 | 5.60E-168 | 600.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055276.t1 | Q09893 | 39.5 | 129 | 74 | 3 | 18 | 143 | 8 | 135 | 8.5e-16 | 85.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055276.t1 | I3S857 | 96.7 | 301 | 10 | 0 | 1 | 301 | 1 | 301 | 4.0e-168 | 600.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055276 | MS.gene060482 | 0.800875 | 1.17E-48 | -1.69E-46 |
| MS.gene055276 | MS.gene26158 | -0.81057 | 1.08E-50 | -1.69E-46 |
| MS.gene055276 | MS.gene46174 | 0.890166 | 1.26E-73 | -1.69E-46 |
| MS.gene055276 | MS.gene96863 | 0.962985 | 1.56E-121 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene26907 | MS.gene055276 | PPI |
| MS.gene80067 | MS.gene055276 | PPI |
| MS.gene006477 | MS.gene055276 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055276.t1 | MTR_7g062150 | 96.678 | 301 | 10 | 0 | 1 | 301 | 1 | 301 | 0.0 | 610 |
| MS.gene055276.t1 | MTR_4g021800 | 83.828 | 303 | 40 | 4 | 1 | 301 | 1 | 296 | 0.0 | 502 |
| MS.gene055276.t1 | MTR_7g062150 | 96.522 | 230 | 8 | 0 | 1 | 230 | 1 | 230 | 4.50e-170 | 471 |
| MS.gene055276.t1 | MTR_4g021825 | 73.510 | 302 | 77 | 2 | 1 | 301 | 25 | 324 | 7.38e-163 | 456 |
| MS.gene055276.t1 | MTR_4g021800 | 85.271 | 258 | 30 | 3 | 45 | 301 | 1 | 251 | 1.80e-155 | 434 |
| MS.gene055276.t1 | MTR_4g021800 | 83.621 | 232 | 32 | 3 | 1 | 230 | 1 | 228 | 4.97e-136 | 384 |
| MS.gene055276.t1 | MTR_2g097520 | 55.298 | 302 | 123 | 3 | 1 | 301 | 1 | 291 | 3.58e-113 | 329 |
| MS.gene055276.t1 | MTR_4g064380 | 54.485 | 301 | 117 | 4 | 1 | 301 | 1 | 281 | 2.84e-112 | 326 |
| MS.gene055276.t1 | MTR_1g085570 | 48.197 | 305 | 106 | 3 | 1 | 301 | 1 | 257 | 2.28e-99 | 292 |
| MS.gene055276.t1 | MTR_1g085570 | 50.347 | 288 | 95 | 2 | 14 | 301 | 10 | 249 | 4.90e-99 | 291 |
| MS.gene055276.t1 | MTR_1g085570 | 50.173 | 289 | 95 | 3 | 14 | 301 | 10 | 250 | 2.47e-97 | 287 |
| MS.gene055276.t1 | MTR_1g085570 | 50.209 | 239 | 71 | 2 | 14 | 252 | 10 | 200 | 1.58e-79 | 241 |
| MS.gene055276.t1 | MTR_1g104610 | 44.056 | 286 | 113 | 3 | 15 | 298 | 10 | 250 | 4.28e-78 | 238 |
| MS.gene055276.t1 | MTR_1g104610 | 47.059 | 238 | 84 | 1 | 15 | 252 | 10 | 205 | 8.19e-70 | 216 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055276.t1 | AT5G02230 | 69.205 | 302 | 70 | 2 | 1 | 301 | 1 | 280 | 6.09e-144 | 406 |
| MS.gene055276.t1 | AT5G02230 | 69.205 | 302 | 70 | 2 | 1 | 301 | 1 | 280 | 6.09e-144 | 406 |
| MS.gene055276.t1 | AT5G02230 | 69.205 | 302 | 70 | 2 | 1 | 301 | 38 | 317 | 1.43e-143 | 407 |
| MS.gene055276.t1 | AT5G59480 | 56.187 | 299 | 110 | 2 | 1 | 297 | 1 | 280 | 2.14e-118 | 342 |
| MS.gene055276.t1 | AT5G59480 | 56.187 | 299 | 110 | 2 | 1 | 297 | 1 | 280 | 2.14e-118 | 342 |
| MS.gene055276.t1 | AT5G59480 | 56.187 | 299 | 110 | 2 | 1 | 297 | 1 | 280 | 2.14e-118 | 342 |
| MS.gene055276.t1 | AT5G59480 | 56.187 | 299 | 110 | 2 | 1 | 297 | 1 | 280 | 2.14e-118 | 342 |
| MS.gene055276.t1 | AT5G59480 | 56.187 | 299 | 109 | 3 | 1 | 297 | 1 | 279 | 2.40e-116 | 337 |
| MS.gene055276.t1 | AT5G59490 | 54.485 | 301 | 96 | 4 | 6 | 301 | 2 | 266 | 1.68e-103 | 303 |
| MS.gene055276.t1 | AT3G62040 | 53.165 | 237 | 63 | 3 | 45 | 280 | 1 | 190 | 7.14e-83 | 249 |
| MS.gene055276.t1 | AT2G32150 | 46.992 | 266 | 100 | 3 | 16 | 281 | 7 | 231 | 8.59e-83 | 250 |
| MS.gene055276.t1 | AT5G59490 | 55.061 | 247 | 75 | 3 | 6 | 252 | 2 | 212 | 6.58e-81 | 244 |
| MS.gene055276.t1 | AT2G32150 | 47.257 | 237 | 84 | 3 | 16 | 252 | 7 | 202 | 5.74e-69 | 214 |
| MS.gene055276.t1 | AT2G32150 | 46.083 | 217 | 76 | 3 | 16 | 232 | 7 | 182 | 1.23e-60 | 191 |
Find 64 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCCCAGCTTGTATGTTTC+TGG | 0.134165 | 7.4:-41725636 | None:intergenic |
| TTCCAAATATTTGATATTAT+TGG | 0.138096 | 7.4:+41724886 | MS.gene055276:CDS |
| GAACAACTATGGCTGGTTTA+AGG | 0.158157 | 7.4:+41723968 | MS.gene055276:CDS |
| AAATATGATTGTCTTCTATT+TGG | 0.166756 | 7.4:+41723600 | MS.gene055276:CDS |
| GGCCAATAATATCAAATATT+TGG | 0.189719 | 7.4:-41724888 | None:intergenic |
| TCCGAAGGTTTGCAAATAAT+TGG | 0.190370 | 7.4:-41724952 | None:intergenic |
| CCATTGATTTATAGATTATA+TGG | 0.220325 | 7.4:+41723879 | MS.gene055276:intron |
| TCTTGCTAAGCCTCCCTTAT+AGG | 0.226837 | 7.4:+41724410 | MS.gene055276:CDS |
| GAGAGGCAGTGCCAGAATTA+TGG | 0.244343 | 7.4:+41725865 | MS.gene055276:CDS |
| AAACTTACTAGTTTCCTATA+AGG | 0.248483 | 7.4:-41724424 | None:intergenic |
| ATTTCAGATTCCCATAATTC+TGG | 0.252639 | 7.4:-41725876 | None:intergenic |
| TTGCAAATAATTGGTGTCTT+TGG | 0.268860 | 7.4:-41724943 | None:intergenic |
| AGCAAGAGGTTCCTTAGAAT+TGG | 0.290543 | 7.4:-41724394 | None:intergenic |
| GGTAAATCAGAGAGAATTAA+AGG | 0.325180 | 7.4:+41725807 | MS.gene055276:CDS |
| GCATGTGGACAAAATATTAA+AGG | 0.327206 | 7.4:+41723760 | MS.gene055276:CDS |
| GAAGAAGATATTGAGTTTGT+AGG | 0.359501 | 7.4:+41724820 | MS.gene055276:CDS |
| AACAACTATGGCTGGTTTAA+GGG | 0.377629 | 7.4:+41723969 | MS.gene055276:CDS |
| TTGGATTGGATTGTGCAAAA+TGG | 0.380576 | 7.4:-41724909 | None:intergenic |
| AGAGGCAGTGCCAGAATTAT+GGG | 0.383627 | 7.4:+41725866 | MS.gene055276:CDS |
| ATTCTGGCACTGCCTCTCTA+AGG | 0.393934 | 7.4:-41725860 | None:intergenic |
| AACTTACTAGTTTCCTATAA+GGG | 0.397060 | 7.4:-41724423 | None:intergenic |
| TTGTGGTCAATTTAGGCAAT+TGG | 0.398955 | 7.4:+41724161 | MS.gene055276:intron |
| ACCAATTATTTGCAAACCTT+CGG | 0.402223 | 7.4:+41724951 | MS.gene055276:CDS |
| GCAAGAGGTTCCTTAGAATT+GGG | 0.408266 | 7.4:-41724393 | None:intergenic |
| TGAAGCCAGACCCAATTCTA+AGG | 0.410678 | 7.4:+41724383 | MS.gene055276:CDS |
| GTCTTTGGCAACACTTCACT+TGG | 0.416899 | 7.4:-41724928 | None:intergenic |
| AAGGTTGTGGATGCTTTCTA+AGG | 0.423337 | 7.4:-41725841 | None:intergenic |
| TTTGCAATACCACAGCTTAG+TGG | 0.425245 | 7.4:-41723736 | None:intergenic |
| TGGCAACACTTCACTTGGAT+TGG | 0.430282 | 7.4:-41724923 | None:intergenic |
| AGTTCTTTGTGGGTCAAGAT+TGG | 0.432122 | 7.4:-41725004 | None:intergenic |
| ATGCAGTTAAGGCACTAAAC+AGG | 0.445452 | 7.4:+41724716 | MS.gene055276:CDS |
| AGGTTCCTTAGAATTGGGTC+TGG | 0.448378 | 7.4:-41724388 | None:intergenic |
| AACTATGGAACAACTATGGC+TGG | 0.456420 | 7.4:+41723961 | MS.gene055276:CDS |
| AGACAAAGTTCATGCAGTTA+AGG | 0.463592 | 7.4:+41724705 | MS.gene055276:CDS |
| ACTAGTACTTGTGGTATGAT+TGG | 0.466261 | 7.4:-41724854 | None:intergenic |
| TCTGAAATTAAATCAGAAGT+TGG | 0.466334 | 7.4:+41725891 | MS.gene055276:CDS |
| AGAAACACTGTTCTTGTGGA+TGG | 0.473227 | 7.4:-41724791 | None:intergenic |
| GATTATATGGTTGAGAAGCT+TGG | 0.473494 | 7.4:+41723892 | MS.gene055276:intron |
| GCACTGCCTCTCTAAGGTTG+TGG | 0.491454 | 7.4:-41725854 | None:intergenic |
| GGAGACATCTGTGACTGCTT+AGG | 0.506170 | 7.4:+41725935 | MS.gene055276:CDS |
| TCTGGCTTCAGATTCTCATA+TGG | 0.506394 | 7.4:-41724370 | None:intergenic |
| TGCATGAACTTTGTCTGCAT+TGG | 0.507933 | 7.4:-41724698 | None:intergenic |
| CATCAGAAACACTGTTCTTG+TGG | 0.523606 | 7.4:-41724795 | None:intergenic |
| GAAACACTGTTCTTGTGGAT+GGG | 0.532461 | 7.4:-41724790 | None:intergenic |
| GTTAAGGCACTAAACAGGCT+TGG | 0.537369 | 7.4:+41724721 | MS.gene055276:CDS |
| TTCGGAATATGCCATTGAGT+TGG | 0.549934 | 7.4:+41724969 | MS.gene055276:CDS |
| AGTGCCAGAAACATACAAGC+TGG | 0.558578 | 7.4:+41725632 | MS.gene055276:CDS |
| TATCTTGAGAGCCAACTCAA+TGG | 0.573981 | 7.4:-41724980 | None:intergenic |
| TTATTCTAACAAGCTTGCTG+TGG | 0.580000 | 7.4:+41725914 | MS.gene055276:CDS |
| AACTCAATGGCATATTCCGA+AGG | 0.590798 | 7.4:-41724967 | None:intergenic |
| TGTGGGACTTGACACTGTGC+TGG | 0.591732 | 7.4:+41725661 | MS.gene055276:CDS |
| TTGACTATGATGAATATCAC+AGG | 0.610280 | 7.4:+41724192 | MS.gene055276:CDS |
| TTACTAGTTTCCTATAAGGG+AGG | 0.612508 | 7.4:-41724420 | None:intergenic |
| GTGCCAGAAACATACAAGCT+GGG | 0.615550 | 7.4:+41725633 | MS.gene055276:CDS |
| TATAAGGGAGGCTTAGCAAG+AGG | 0.623743 | 7.4:-41724408 | None:intergenic |
| GTTACTACCACTAGTACTTG+TGG | 0.630315 | 7.4:-41724863 | None:intergenic |
| CATACAAGCTGGGAAACGTG+TGG | 0.635233 | 7.4:+41725643 | MS.gene055276:CDS |
| CTGCTTGAAATGGAGTACGA+GGG | 0.637705 | 7.4:+41723552 | None:intergenic |
| ATACAAGCTGGGAAACGTGT+GGG | 0.639764 | 7.4:+41725644 | MS.gene055276:CDS |
| AATCATACCACAAGTACTAG+TGG | 0.639846 | 7.4:+41724856 | MS.gene055276:CDS |
| TCTGCTTGAAATGGAGTACG+AGG | 0.655487 | 7.4:+41723551 | None:intergenic |
| ACTTTGTATCCACTAAGCTG+TGG | 0.665300 | 7.4:+41723727 | MS.gene055276:CDS |
| AAGCATCCACAACCTTAGAG+AGG | 0.675174 | 7.4:+41725848 | MS.gene055276:CDS |
| TGTGGTATTGCAAAAGCATG+TGG | 0.705500 | 7.4:+41723745 | MS.gene055276:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATAATATTTATACACTTT+AGG | - | chr7.4:41724481-41724500 | None:intergenic | 10.0% |
| !! | AATGACAAAAAAAACAAATT+AGG | - | chr7.4:41725584-41725603 | None:intergenic | 15.0% |
| !! | ATAACATAATGTCAATAATT+TGG | - | chr7.4:41725728-41725747 | None:intergenic | 15.0% |
| !! | TTCCAAATATTTGATATTAT+TGG | + | chr7.4:41724886-41724905 | MS.gene055276:CDS | 15.0% |
| !!! | ACTTATGTTTTTTTTTTTTG+TGG | + | chr7.4:41724144-41724163 | MS.gene055276:intron | 15.0% |
| !!! | TTACTTGCTATAATAAAAAT+CGG | + | chr7.4:41725190-41725209 | MS.gene055276:intron | 15.0% |
| !! | AAATATGATTGTCTTCTATT+TGG | + | chr7.4:41723600-41723619 | MS.gene055276:CDS | 20.0% |
| !! | CCATATAATCTATAAATCAA+TGG | - | chr7.4:41723882-41723901 | None:intergenic | 20.0% |
| !! | TATATAACAAATGTTAGCAA+TGG | - | chr7.4:41725691-41725710 | None:intergenic | 20.0% |
| !! | TGTAACAATCAAATAATTAG+AGG | - | chr7.4:41725769-41725788 | None:intergenic | 20.0% |
| !!! | ATTTTAATGATGAGTGTATT+AGG | - | chr7.4:41725043-41725062 | None:intergenic | 20.0% |
| !!! | CCATTGATTTATAGATTATA+TGG | + | chr7.4:41723879-41723898 | MS.gene055276:intron | 20.0% |
| !!! | TTTTAGTAATCTGTAACAAA+CGG | - | chr7.4:41725098-41725117 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTGTGGTCAATTT+AGG | + | chr7.4:41724154-41724173 | MS.gene055276:intron | 20.0% |
| ! | AACCATCTTTACAAAAACTA+TGG | + | chr7.4:41723946-41723965 | MS.gene055276:CDS | 25.0% |
| ! | ACGTGTGATTACAAATATTA+AGG | - | chr7.4:41725452-41725471 | None:intergenic | 25.0% |
| ! | ATAGGAAAAACACAATAAAG+AGG | - | chr7.4:41724669-41724688 | None:intergenic | 25.0% |
| ! | CACATTACTAAGAACATTAT+TGG | - | chr7.4:41723800-41723819 | None:intergenic | 25.0% |
| ! | CGTGTGATTACAAATATTAA+GGG | - | chr7.4:41725451-41725470 | None:intergenic | 25.0% |
| ! | GGCCAATAATATCAAATATT+TGG | - | chr7.4:41724891-41724910 | None:intergenic | 25.0% |
| ! | GTAAACAGATTCTAAGTTAT+TGG | - | chr7.4:41725135-41725154 | None:intergenic | 25.0% |
| ! | TAGAAGTGATGTAGTATAAA+AGG | - | chr7.4:41724239-41724258 | None:intergenic | 25.0% |
| ! | TGTTACACATCATTGTATAT+AGG | + | chr7.4:41725782-41725801 | MS.gene055276:intron | 25.0% |
| !! | AAACTTACTAGTTTCCTATA+AGG | - | chr7.4:41724427-41724446 | None:intergenic | 25.0% |
| !! | AACTTACTAGTTTCCTATAA+GGG | - | chr7.4:41724426-41724445 | None:intergenic | 25.0% |
| !! | ATAGTTTTTGTAAAGATGGT+TGG | - | chr7.4:41723947-41723966 | None:intergenic | 25.0% |
| !! | TCATTTTCAGTTATTCTTTG+AGG | + | chr7.4:41725607-41725626 | MS.gene055276:intron | 25.0% |
| !! | TCTGAAATTAAATCAGAAGT+TGG | + | chr7.4:41725891-41725910 | MS.gene055276:CDS | 25.0% |
| !! | TTCCATAGTTTTTGTAAAGA+TGG | - | chr7.4:41723951-41723970 | None:intergenic | 25.0% |
| !! | TTTGATGCATGTAATTTTGT+TGG | + | chr7.4:41723830-41723849 | MS.gene055276:intron | 25.0% |
| !!! | TGTTAATACAGTTTTGTTCA+TGG | + | chr7.4:41724340-41724359 | MS.gene055276:intron | 25.0% |
| ACACATCATTGTATATAGGT+TGG | + | chr7.4:41725786-41725805 | MS.gene055276:intron | 30.0% | |
| ACCAATTATTTGCAAACCTT+CGG | + | chr7.4:41724951-41724970 | MS.gene055276:CDS | 30.0% | |
| AGAAATTAAGCTGAAATCAC+AGG | + | chr7.4:41724112-41724131 | MS.gene055276:intron | 30.0% | |
| AGGTATTAAATTTGAGAGTG+TGG | - | chr7.4:41724461-41724480 | None:intergenic | 30.0% | |
| ATTAGAGGCTCATATTTGTT+TGG | - | chr7.4:41725754-41725773 | None:intergenic | 30.0% | |
| ATTTAAGCTGAAATTGTCGA+TGG | + | chr7.4:41724025-41724044 | MS.gene055276:intron | 30.0% | |
| ATTTCAGATTCCCATAATTC+TGG | - | chr7.4:41725879-41725898 | None:intergenic | 30.0% | |
| CAAAAACTATGGAACAACTA+TGG | + | chr7.4:41723957-41723976 | MS.gene055276:CDS | 30.0% | |
| GAAGAAGATATTGAGTTTGT+AGG | + | chr7.4:41724820-41724839 | MS.gene055276:CDS | 30.0% | |
| GCATGTGGACAAAATATTAA+AGG | + | chr7.4:41723760-41723779 | MS.gene055276:CDS | 30.0% | |
| GGTAAATCAGAGAGAATTAA+AGG | + | chr7.4:41725807-41725826 | MS.gene055276:CDS | 30.0% | |
| TTGACTATGATGAATATCAC+AGG | + | chr7.4:41724192-41724211 | MS.gene055276:CDS | 30.0% | |
| TTTAAGCTGAAATTGTCGAT+GGG | + | chr7.4:41724026-41724045 | MS.gene055276:intron | 30.0% | |
| TTTGTAATCACACGTAATTG+TGG | + | chr7.4:41725457-41725476 | MS.gene055276:intron | 30.0% | |
| ! | GTTTTCTTACAGTTCTTTGT+GGG | - | chr7.4:41725017-41725036 | None:intergenic | 30.0% |
| ! | TGTTTTCTTACAGTTCTTTG+TGG | - | chr7.4:41725018-41725037 | None:intergenic | 30.0% |
| ! | TTGCAAATAATTGGTGTCTT+TGG | - | chr7.4:41724946-41724965 | None:intergenic | 30.0% |
| !!! | CTGCGAACTTTGAAATTTTT+AGG | - | chr7.4:41725526-41725545 | None:intergenic | 30.0% |
| AATCATACCACAAGTACTAG+TGG | + | chr7.4:41724856-41724875 | MS.gene055276:CDS | 35.0% | |
| ACTAGTACTTGTGGTATGAT+TGG | - | chr7.4:41724857-41724876 | None:intergenic | 35.0% | |
| AGACAAAGTTCATGCAGTTA+AGG | + | chr7.4:41724705-41724724 | MS.gene055276:CDS | 35.0% | |
| CCGTGGCTACAAAATTATAA+CGG | - | chr7.4:41725411-41725430 | None:intergenic | 35.0% | |
| GATTATATGGTTGAGAAGCT+TGG | + | chr7.4:41723892-41723911 | MS.gene055276:intron | 35.0% | |
| TCCGAAGGTTTGCAAATAAT+TGG | - | chr7.4:41724955-41724974 | None:intergenic | 35.0% | |
| TTGTGGTCAATTTAGGCAAT+TGG | + | chr7.4:41724161-41724180 | MS.gene055276:intron | 35.0% | |
| ! | CCGTTATAATTTTGTAGCCA+CGG | + | chr7.4:41725408-41725427 | MS.gene055276:intron | 35.0% |
| ! | TAATTTTGTAGCCACGGTTT+AGG | + | chr7.4:41725414-41725433 | MS.gene055276:intron | 35.0% |
| ! | TTACTAGTTTCCTATAAGGG+AGG | - | chr7.4:41724423-41724442 | None:intergenic | 35.0% |
| ! | TTGGATTGGATTGTGCAAAA+TGG | - | chr7.4:41724912-41724931 | None:intergenic | 35.0% |
| !! | AACAACTATGGCTGGTTTAA+GGG | + | chr7.4:41723969-41723988 | MS.gene055276:CDS | 35.0% |
| !! | TTATTCTAACAAGCTTGCTG+TGG | + | chr7.4:41725914-41725933 | MS.gene055276:CDS | 35.0% |
| !!! | GGACTAGAAGATTGTTTTGA+AGG | + | chr7.4:41724742-41724761 | MS.gene055276:CDS | 35.0% |
| AACTATGGAACAACTATGGC+TGG | + | chr7.4:41723961-41723980 | MS.gene055276:CDS | 40.0% | |
| AACTCAATGGCATATTCCGA+AGG | - | chr7.4:41724970-41724989 | None:intergenic | 40.0% | |
| AAGGTTGTGGATGCTTTCTA+AGG | - | chr7.4:41725844-41725863 | None:intergenic | 40.0% | |
| ACTTTGTATCCACTAAGCTG+TGG | + | chr7.4:41723727-41723746 | MS.gene055276:CDS | 40.0% | |
| AGAAACACTGTTCTTGTGGA+TGG | - | chr7.4:41724794-41724813 | None:intergenic | 40.0% | |
| AGCAAGAGGTTCCTTAGAAT+TGG | - | chr7.4:41724397-41724416 | None:intergenic | 40.0% | |
| AGTTCTTTGTGGGTCAAGAT+TGG | - | chr7.4:41725007-41725026 | None:intergenic | 40.0% | |
| ATCAGTCCTCTCGAATTAGT+CGG | + | chr7.4:41724049-41724068 | MS.gene055276:intron | 40.0% | |
| CATCAGAAACACTGTTCTTG+TGG | - | chr7.4:41724798-41724817 | None:intergenic | 40.0% | |
| GAAACACTGTTCTTGTGGAT+GGG | - | chr7.4:41724793-41724812 | None:intergenic | 40.0% | |
| GCAAGAGGTTCCTTAGAATT+GGG | - | chr7.4:41724396-41724415 | None:intergenic | 40.0% | |
| GTTACTACCACTAGTACTTG+TGG | - | chr7.4:41724866-41724885 | None:intergenic | 40.0% | |
| TATCTTGAGAGCCAACTCAA+TGG | - | chr7.4:41724983-41725002 | None:intergenic | 40.0% | |
| TGCATGAACTTTGTCTGCAT+TGG | - | chr7.4:41724701-41724720 | None:intergenic | 40.0% | |
| TTCGGAATATGCCATTGAGT+TGG | + | chr7.4:41724969-41724988 | MS.gene055276:CDS | 40.0% | |
| TTTCCCAGCTTGTATGTTTC+TGG | - | chr7.4:41725639-41725658 | None:intergenic | 40.0% | |
| TTTGCAATACCACAGCTTAG+TGG | - | chr7.4:41723739-41723758 | None:intergenic | 40.0% | |
| ! | ATGCAGTTAAGGCACTAAAC+AGG | + | chr7.4:41724716-41724735 | MS.gene055276:CDS | 40.0% |
| ! | CTGCATTGGTGAAGATCTAT+AGG | - | chr7.4:41724687-41724706 | None:intergenic | 40.0% |
| ! | TCTGGCTTCAGATTCTCATA+TGG | - | chr7.4:41724373-41724392 | None:intergenic | 40.0% |
| ! | TGTGGTATTGCAAAAGCATG+TGG | + | chr7.4:41723745-41723764 | MS.gene055276:CDS | 40.0% |
| !! | GAACAACTATGGCTGGTTTA+AGG | + | chr7.4:41723968-41723987 | MS.gene055276:CDS | 40.0% |
| AAGCATCCACAACCTTAGAG+AGG | + | chr7.4:41725848-41725867 | MS.gene055276:CDS | 45.0% | |
| AGAGGCAGTGCCAGAATTAT+GGG | + | chr7.4:41725866-41725885 | MS.gene055276:CDS | 45.0% | |
| AGGTTCCTTAGAATTGGGTC+TGG | - | chr7.4:41724391-41724410 | None:intergenic | 45.0% | |
| AGTGCCAGAAACATACAAGC+TGG | + | chr7.4:41725632-41725651 | MS.gene055276:CDS | 45.0% | |
| ATACAAGCTGGGAAACGTGT+GGG | + | chr7.4:41725644-41725663 | MS.gene055276:CDS | 45.0% | |
| CTAAGACCGACTAATTCGAG+AGG | - | chr7.4:41724058-41724077 | None:intergenic | 45.0% | |
| GTCTTTGGCAACACTTCACT+TGG | - | chr7.4:41724931-41724950 | None:intergenic | 45.0% | |
| GTGCCAGAAACATACAAGCT+GGG | + | chr7.4:41725633-41725652 | MS.gene055276:CDS | 45.0% | |
| TATAAGGGAGGCTTAGCAAG+AGG | - | chr7.4:41724411-41724430 | None:intergenic | 45.0% | |
| TCTTGCTAAGCCTCCCTTAT+AGG | + | chr7.4:41724410-41724429 | MS.gene055276:CDS | 45.0% | |
| TGAAGCCAGACCCAATTCTA+AGG | + | chr7.4:41724383-41724402 | MS.gene055276:CDS | 45.0% | |
| TGGCAACACTTCACTTGGAT+TGG | - | chr7.4:41724926-41724945 | None:intergenic | 45.0% | |
| ! | GTTAAGGCACTAAACAGGCT+TGG | + | chr7.4:41724721-41724740 | MS.gene055276:CDS | 45.0% |
| ATTCTGGCACTGCCTCTCTA+AGG | - | chr7.4:41725863-41725882 | None:intergenic | 50.0% | |
| CAAAGTTCGCAGTCAGATCG+TGG | + | chr7.4:41725534-41725553 | MS.gene055276:intron | 50.0% | |
| CATACAAGCTGGGAAACGTG+TGG | + | chr7.4:41725643-41725662 | MS.gene055276:CDS | 50.0% | |
| GAGAGGCAGTGCCAGAATTA+TGG | + | chr7.4:41725865-41725884 | MS.gene055276:CDS | 50.0% | |
| TGTGGGACTTGACACTGTGC+TGG | + | chr7.4:41725661-41725680 | MS.gene055276:CDS | 55.0% | |
| TTGCGATGCTGCCTAAACCG+TGG | - | chr7.4:41725428-41725447 | None:intergenic | 55.0% | |
| !! | GCACTGCCTCTCTAAGGTTG+TGG | - | chr7.4:41725857-41725876 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 41723561 | 41725956 | 41723561 | ID=MS.gene055276 |
| chr7.4 | mRNA | 41723561 | 41725956 | 41723561 | ID=MS.gene055276.t1;Parent=MS.gene055276 |
| chr7.4 | exon | 41723561 | 41723621 | 41723561 | ID=MS.gene055276.t1.exon1;Parent=MS.gene055276.t1 |
| chr7.4 | CDS | 41723561 | 41723621 | 41723561 | ID=cds.MS.gene055276.t1;Parent=MS.gene055276.t1 |
| chr7.4 | exon | 41723716 | 41723781 | 41723716 | ID=MS.gene055276.t1.exon2;Parent=MS.gene055276.t1 |
| chr7.4 | CDS | 41723716 | 41723781 | 41723716 | ID=cds.MS.gene055276.t1;Parent=MS.gene055276.t1 |
| chr7.4 | exon | 41723893 | 41723990 | 41723893 | ID=MS.gene055276.t1.exon3;Parent=MS.gene055276.t1 |
| chr7.4 | CDS | 41723893 | 41723990 | 41723893 | ID=cds.MS.gene055276.t1;Parent=MS.gene055276.t1 |
| chr7.4 | exon | 41724176 | 41724213 | 41724176 | ID=MS.gene055276.t1.exon4;Parent=MS.gene055276.t1 |
| chr7.4 | CDS | 41724176 | 41724213 | 41724176 | ID=cds.MS.gene055276.t1;Parent=MS.gene055276.t1 |
| chr7.4 | exon | 41724351 | 41724438 | 41724351 | ID=MS.gene055276.t1.exon5;Parent=MS.gene055276.t1 |
| chr7.4 | CDS | 41724351 | 41724438 | 41724351 | ID=cds.MS.gene055276.t1;Parent=MS.gene055276.t1 |
| chr7.4 | exon | 41724691 | 41725026 | 41724691 | ID=MS.gene055276.t1.exon6;Parent=MS.gene055276.t1 |
| chr7.4 | CDS | 41724691 | 41725026 | 41724691 | ID=cds.MS.gene055276.t1;Parent=MS.gene055276.t1 |
| chr7.4 | exon | 41725617 | 41725682 | 41725617 | ID=MS.gene055276.t1.exon7;Parent=MS.gene055276.t1 |
| chr7.4 | CDS | 41725617 | 41725682 | 41725617 | ID=cds.MS.gene055276.t1;Parent=MS.gene055276.t1 |
| chr7.4 | exon | 41725804 | 41725956 | 41725804 | ID=MS.gene055276.t1.exon8;Parent=MS.gene055276.t1 |
| chr7.4 | CDS | 41725804 | 41725956 | 41725804 | ID=cds.MS.gene055276.t1;Parent=MS.gene055276.t1 |
| Gene Sequence |
| Protein sequence |
