Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46320.t1 | XP_013467935.1 | 97.2 | 832 | 18 | 1 | 1 | 827 | 16 | 847 | 0.00E+00 | 1565.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46320.t1 | A0A072VJK4 | 97.2 | 832 | 18 | 1 | 1 | 827 | 16 | 847 | 0.0e+00 | 1565.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049356 | MS.gene46320 | 0.816657 | 4.94E-52 | -1.69E-46 |
| MS.gene049369 | MS.gene46320 | 0.846568 | 2.00E-59 | -1.69E-46 |
| MS.gene050812 | MS.gene46320 | 0.805613 | 1.23E-49 | -1.69E-46 |
| MS.gene052188 | MS.gene46320 | 0.814069 | 1.86E-51 | -1.69E-46 |
| MS.gene053912 | MS.gene46320 | 0.800741 | 1.25E-48 | -1.69E-46 |
| MS.gene055539 | MS.gene46320 | 0.826313 | 2.90E-54 | -1.69E-46 |
| MS.gene055750 | MS.gene46320 | 0.801652 | 8.14E-49 | -1.69E-46 |
| MS.gene057537 | MS.gene46320 | 0.819827 | 9.47E-53 | -1.69E-46 |
| MS.gene057734 | MS.gene46320 | 0.812145 | 4.91E-51 | -1.69E-46 |
| MS.gene058120 | MS.gene46320 | 0.851042 | 1.15E-60 | -1.69E-46 |
| MS.gene06097 | MS.gene46320 | 0.81128 | 7.58E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 185 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGTTCCGGGTCGGGCTTTC+TGG | 0.093751 | 1.3:-42886321 | None:intergenic |
| CATTTGCTGTTTGCTCTTAT+TGG | 0.123771 | 1.3:+42883173 | MS.gene46320:CDS |
| GAGAAGGATTTGGCTATATT+TGG | 0.149892 | 1.3:+42882509 | MS.gene46320:CDS |
| ATTGCCTACTATTTAGTAAA+TGG | 0.157021 | 1.3:+42877985 | MS.gene46320:CDS |
| GAATTATAAGCTTGACTTAC+AGG | 0.172414 | 1.3:-42881698 | None:intergenic |
| TTTATTACAGGTATCTTATT+GGG | 0.237944 | 1.3:+42882889 | MS.gene46320:intron |
| ATTTATTACAGGTATCTTAT+TGG | 0.238493 | 1.3:+42882888 | MS.gene46320:intron |
| AGAGAATTTCTTGTACATTT+TGG | 0.238907 | 1.3:+42881743 | MS.gene46320:CDS |
| TGGGTCACTGCTTCTGCATT+TGG | 0.242483 | 1.3:-42883148 | None:intergenic |
| TCTGCATTTGGAGGACCTTC+TGG | 0.248549 | 1.3:-42883136 | None:intergenic |
| TTCACTTGCAGCATATAATA+AGG | 0.269650 | 1.3:-42880603 | None:intergenic |
| GAAGGATTTCATTGGGTTCT+TGG | 0.270749 | 1.3:-42887771 | None:intergenic |
| TTTGGATTCTTTATTGCTTT+AGG | 0.283500 | 1.3:+42882527 | MS.gene46320:CDS |
| TTGGAAAATCTCGTGGATTC+TGG | 0.286568 | 1.3:+42886276 | MS.gene46320:CDS |
| ATCCACGTGATGACGATTTA+TGG | 0.292434 | 1.3:-42878310 | None:intergenic |
| CTGACTGATAGGCACTTCTT+TGG | 0.308188 | 1.3:-42887840 | None:intergenic |
| AGGACAAATCATGTTGAATA+AGG | 0.322447 | 1.3:-42878028 | None:intergenic |
| GGTTCCGGGTCGGGCTTTCT+GGG | 0.326767 | 1.3:-42886320 | None:intergenic |
| TTGCCTACTATTTAGTAAAT+GGG | 0.337487 | 1.3:+42877986 | MS.gene46320:CDS |
| TAAGAAAGAAGCTGAATTCC+TGG | 0.342804 | 1.3:+42885002 | MS.gene46320:CDS |
| TCCATGAGCACTGAGATAAC+TGG | 0.352935 | 1.3:+42881644 | MS.gene46320:CDS |
| CTGAAGTGTACGAATGGTTT+TGG | 0.355223 | 1.3:+42881302 | MS.gene46320:CDS |
| CTCAAAGCGAAGGATTTCAT+TGG | 0.379425 | 1.3:-42887779 | None:intergenic |
| GGGTCGGGCTTTCTGGGTAT+AGG | 0.385827 | 1.3:-42886314 | None:intergenic |
| TCAAGCTTATAATTCTATAA+AGG | 0.386303 | 1.3:+42881706 | MS.gene46320:CDS |
| ATACAATTGATATGAACTAA+TGG | 0.391551 | 1.3:-42882943 | None:intergenic |
| TGGTCCACAACCCCTACATT+TGG | 0.398293 | 1.3:-42887751 | None:intergenic |
| TGAGCATCCACATCAGGTTC+CGG | 0.399986 | 1.3:-42886335 | None:intergenic |
| TGTTAGGCACAACAAGTTGA+TGG | 0.400862 | 1.3:+42883355 | MS.gene46320:intron |
| AAGTACACGAACATTTCTTT+TGG | 0.405597 | 1.3:+42882553 | MS.gene46320:CDS |
| TTTGTGATGCTGGTGATTCC+CGG | 0.407876 | 1.3:-42883091 | None:intergenic |
| TCCACATCAGGTTCCGGGTC+GGG | 0.407937 | 1.3:-42886329 | None:intergenic |
| CTGCCTCGGGTTTGGTCAAA+AGG | 0.408786 | 1.3:+42888724 | MS.gene46320:CDS |
| TGAGATAACTGGTAGTTTGA+TGG | 0.414550 | 1.3:+42881655 | MS.gene46320:CDS |
| GTCACTGCTTCTGCATTTGG+AGG | 0.415112 | 1.3:-42883145 | None:intergenic |
| AACTGAAGCCATGTCAGTTA+AGG | 0.424587 | 1.3:-42888799 | None:intergenic |
| CATGTGTCAAGCTCTAGTTC+TGG | 0.429376 | 1.3:+42884928 | MS.gene46320:CDS |
| TATTGATGTTGGTGCTGCCT+CGG | 0.429403 | 1.3:+42888710 | MS.gene46320:CDS |
| TTCGTACACTTCAGGCTGTT+TGG | 0.429694 | 1.3:-42881293 | None:intergenic |
| CTGGTGATTCCCGGATAAAA+AGG | 0.430228 | 1.3:-42883082 | None:intergenic |
| CACCGGTTGGTGAGGAGGAC+AGG | 0.430373 | 1.3:+42886069 | MS.gene46320:CDS |
| TTTGACAAACTAAAAGAAAC+GGG | 0.431505 | 1.3:+42888410 | MS.gene46320:CDS |
| ATGCCTTCACCCATGCGGTT+TGG | 0.433558 | 1.3:-42878364 | None:intergenic |
| TGTTGGTGCTGCCTCGGGTT+TGG | 0.433951 | 1.3:+42888716 | MS.gene46320:CDS |
| AGCTGATGGAACTTGAGAAA+AGG | 0.434158 | 1.3:+42887815 | MS.gene46320:CDS |
| GAGCATCCACATCAGGTTCC+GGG | 0.438761 | 1.3:-42886334 | None:intergenic |
| CTCCAGCATCACCGTTATAA+CGG | 0.441709 | 1.3:-42888337 | None:intergenic |
| AAATCTTCAATTGGATCATC+GGG | 0.443539 | 1.3:-42882593 | None:intergenic |
| ATTGATGTTGGTGCTGCCTC+GGG | 0.446845 | 1.3:+42888711 | MS.gene46320:CDS |
| CAAAACCATTCGTACACTTC+AGG | 0.449478 | 1.3:-42881301 | None:intergenic |
| TCCTTTGTTAATAAGTTTGA+AGG | 0.449982 | 1.3:+42881352 | MS.gene46320:CDS |
| TCCAGCATCACCGTTATAAC+GGG | 0.453068 | 1.3:-42888336 | None:intergenic |
| AAGAGCAAACAGCAAATGCT+TGG | 0.455991 | 1.3:-42883168 | None:intergenic |
| GAAATCTTCAATTGGATCAT+CGG | 0.456727 | 1.3:-42882594 | None:intergenic |
| TTCTATCTCTGCTATCATCT+CGG | 0.457753 | 1.3:-42880634 | None:intergenic |
| CAACTTCTTGCTATTGATGT+TGG | 0.459877 | 1.3:+42888699 | MS.gene46320:CDS |
| ATCCAATTGAAGATTTCATC+AGG | 0.465735 | 1.3:+42882600 | MS.gene46320:CDS |
| GCTAAGGCTATCTGCTCCCT+TGG | 0.466582 | 1.3:+42881243 | MS.gene46320:CDS |
| GAAAGCAGCCTGTTCTGACT+TGG | 0.466824 | 1.3:+42884963 | MS.gene46320:CDS |
| ACCAGTTATCTCAGTGCTCA+TGG | 0.469402 | 1.3:-42881645 | None:intergenic |
| CCATTTGCTACCTCTGATGA+TGG | 0.469525 | 1.3:+42878131 | MS.gene46320:CDS |
| GTTAATAAGTTTGAAGGGGA+CGG | 0.473421 | 1.3:+42881358 | MS.gene46320:CDS |
| ACAAAGGACGTCACTACAGC+TGG | 0.474919 | 1.3:-42881337 | None:intergenic |
| AACCTGTCCTCCTCACCAAC+CGG | 0.476504 | 1.3:-42886071 | None:intergenic |
| TCAAAGCGAAGGATTTCATT+GGG | 0.478454 | 1.3:-42887778 | None:intergenic |
| AACAGCCTGCACCAAATGTA+GGG | 0.479756 | 1.3:+42887740 | MS.gene46320:CDS |
| TACCTGATGAAATCTTCAAT+TGG | 0.481210 | 1.3:-42882602 | None:intergenic |
| AATCGTCATCACGTGGATCC+TGG | 0.482075 | 1.3:+42878315 | MS.gene46320:CDS |
| CCATCATCAGAGGTAGCAAA+TGG | 0.483136 | 1.3:-42878131 | None:intergenic |
| GCCCGTTATAACGGTGATGC+TGG | 0.483322 | 1.3:+42888335 | MS.gene46320:CDS |
| TTGGTCAAAAGGACCTTGAT+AGG | 0.486944 | 1.3:+42888735 | MS.gene46320:CDS |
| ATTGCTGCAATTGCTAAACT+TGG | 0.487614 | 1.3:+42881590 | MS.gene46320:CDS |
| TCTATCTCTGCTATCATCTC+GGG | 0.488428 | 1.3:-42880633 | None:intergenic |
| TGCACCAAATGTAGGGGTTG+TGG | 0.488543 | 1.3:+42887747 | MS.gene46320:CDS |
| CTTTATCGTTGACTGAATTG+TGG | 0.491946 | 1.3:-42884610 | None:intergenic |
| TAAATGGGGCAGTTCAAGAA+AGG | 0.492643 | 1.3:+42878001 | MS.gene46320:CDS |
| TGCAATTGCTAAACTTGGCC+CGG | 0.494454 | 1.3:+42881595 | MS.gene46320:CDS |
| GCTGATGGAACTTGAGAAAA+GGG | 0.494748 | 1.3:+42887816 | MS.gene46320:CDS |
| TAAAGGTGGACAGGAGCAAA+AGG | 0.500329 | 1.3:+42886126 | MS.gene46320:CDS |
| TAGTTTGTGAAGAGCTGGAT+TGG | 0.501881 | 1.3:+42883056 | MS.gene46320:CDS |
| AAGCTTTATATGATGCAGCC+AGG | 0.502582 | 1.3:+42878264 | MS.gene46320:CDS |
| AGTCAATTCATCACCTATCA+AGG | 0.502757 | 1.3:-42888748 | None:intergenic |
| ATGGAGTGCATGGATGAACT+TGG | 0.503782 | 1.3:+42883374 | MS.gene46320:CDS |
| GTTGCAGCAGGCTATTGATA+AGG | 0.504330 | 1.3:+42881847 | MS.gene46320:CDS |
| TGCCCCATTTACTAAATAGT+AGG | 0.504706 | 1.3:-42877989 | None:intergenic |
| AGGAGGACAGGTTTATGAAA+GGG | 0.505159 | 1.3:+42886081 | MS.gene46320:CDS |
| TTAATAAGTTTGAAGGGGAC+GGG | 0.506571 | 1.3:+42881359 | MS.gene46320:CDS |
| TCGAATTGCTGCCTTTCGAA+TGG | 0.509589 | 1.3:+42877927 | MS.gene46320:CDS |
| CATACATGAGCATCCACATC+AGG | 0.511008 | 1.3:-42886341 | None:intergenic |
| TCGAATGGTTCCACAAGTGT+AGG | 0.511585 | 1.3:+42877942 | MS.gene46320:CDS |
| TTCATATCAATTGTATGTTG+AGG | 0.514605 | 1.3:+42882950 | MS.gene46320:CDS |
| CTCCTCACCAACCGGTGTGA+TGG | 0.515931 | 1.3:-42886063 | None:intergenic |
| TTAGCACTGGCGTCAGCTTG+TGG | 0.517278 | 1.3:-42878173 | None:intergenic |
| GAACAGCCTGCACCAAATGT+AGG | 0.520502 | 1.3:+42887739 | MS.gene46320:CDS |
| TGCATTGGTCCAGTTTGCTA+AGG | 0.521404 | 1.3:+42881227 | MS.gene46320:intron |
| CGAATGGTTCCACAAGTGTA+GGG | 0.522305 | 1.3:+42877943 | MS.gene46320:CDS |
| CTATTGATAAGGAGAAAATA+TGG | 0.523593 | 1.3:+42881858 | MS.gene46320:CDS |
| TTATTACAGGTATCTTATTG+GGG | 0.523663 | 1.3:+42882890 | MS.gene46320:intron |
| ATTCGAAAGGCAGCAATTCG+AGG | 0.525886 | 1.3:-42877925 | None:intergenic |
| TTCTCTGATTAAGCTCTCCA+AGG | 0.529124 | 1.3:-42881260 | None:intergenic |
| GGTGAAGGCATTGTCATGTC+AGG | 0.529130 | 1.3:+42878376 | MS.gene46320:CDS |
| ATGTCAATGTATTTGTTCAA+AGG | 0.529604 | 1.3:+42880657 | MS.gene46320:CDS |
| TTGCTCGGAAAGATGCCTCC+AGG | 0.532885 | 1.3:-42885020 | None:intergenic |
| AACTAATGGATGAGAGTTGT+GGG | 0.533106 | 1.3:-42882929 | None:intergenic |
| ATAGGTAGTTTGTGAAGAGC+TGG | 0.533672 | 1.3:+42883051 | MS.gene46320:intron |
| ATGGCTTCAGTTGTTCCTAT+CGG | 0.533849 | 1.3:+42888810 | MS.gene46320:CDS |
| CAATGCATGTAAGTGCAAGC+AGG | 0.534320 | 1.3:-42881571 | None:intergenic |
| GGTTCAGAAGCAGTTGCAGC+AGG | 0.535038 | 1.3:+42881835 | MS.gene46320:CDS |
| AGACAAATTGGAAAATCTCG+TGG | 0.536140 | 1.3:+42886269 | MS.gene46320:intron |
| TATAATTCTATAAAGGATGT+TGG | 0.536506 | 1.3:+42881713 | MS.gene46320:CDS |
| AGAGCAAACAGCAAATGCTT+GGG | 0.537493 | 1.3:-42883167 | None:intergenic |
| CCTTTGTTAATAAGTTTGAA+GGG | 0.539411 | 1.3:+42881353 | MS.gene46320:CDS |
| AGCATCACAAAACAGTCTCA+TGG | 0.542742 | 1.3:+42883103 | MS.gene46320:CDS |
| GCCCGACCCGGAACCTGATG+TGG | 0.543249 | 1.3:+42886328 | MS.gene46320:CDS |
| ATCCACATCAGGTTCCGGGT+CGG | 0.548048 | 1.3:-42886330 | None:intergenic |
| GCTTCTAAGAAATGAGCTGA+TGG | 0.549207 | 1.3:+42887801 | MS.gene46320:CDS |
| AGACCAAACCGCATGGGTGA+AGG | 0.550828 | 1.3:+42878361 | MS.gene46320:CDS |
| CAGAAAGAACGACAATGTAA+AGG | 0.551261 | 1.3:+42886109 | MS.gene46320:CDS |
| TTGGGGTAGACCAAACCGCA+TGG | 0.552422 | 1.3:+42878354 | MS.gene46320:CDS |
| GATGATGGTGCCCGTTATAA+CGG | 0.557094 | 1.3:+42888326 | MS.gene46320:CDS |
| AAGCCAAGCTGTTGAAAACC+AGG | 0.562530 | 1.3:-42878333 | None:intergenic |
| TTGTCCTCGAGCAGTGGTCA+AGG | 0.562849 | 1.3:+42878044 | MS.gene46320:CDS |
| TTCTTAGAAGCTCAAAGCGA+AGG | 0.563042 | 1.3:-42887789 | None:intergenic |
| GAGGAGGACAGGTTTATGAA+AGG | 0.563646 | 1.3:+42886080 | MS.gene46320:CDS |
| CGTTGAGTGGGGTTCAGAAG+AGG | 0.568636 | 1.3:+42881793 | MS.gene46320:CDS |
| ACGACAATGTAAAGGTGGAC+AGG | 0.569510 | 1.3:+42886117 | MS.gene46320:CDS |
| ATGCCAAGAAAATAGTTGAC+GGG | 0.570230 | 1.3:+42884580 | MS.gene46320:CDS |
| ACAACCCCTACATTTGGTGC+AGG | 0.572458 | 1.3:-42887745 | None:intergenic |
| CATCACACCGGTTGGTGAGG+AGG | 0.575965 | 1.3:+42886064 | MS.gene46320:CDS |
| TGGTAGTTTGATGGACATGC+TGG | 0.577164 | 1.3:+42881664 | MS.gene46320:CDS |
| AACCATCACACCGGTTGGTG+AGG | 0.578656 | 1.3:+42886061 | MS.gene46320:CDS |
| CCCTTCAAACTTATTAACAA+AGG | 0.580260 | 1.3:-42881353 | None:intergenic |
| TTCAGTCAACGATAAAGACT+CGG | 0.585397 | 1.3:+42884616 | MS.gene46320:CDS |
| AAAAGCTGATTCTCTGCAAG+AGG | 0.585912 | 1.3:+42885041 | MS.gene46320:CDS |
| GCATCACAAAACAGTCTCAT+GGG | 0.587479 | 1.3:+42883104 | MS.gene46320:CDS |
| ATGATGGTATGACTGTCAAC+GGG | 0.587846 | 1.3:+42878147 | MS.gene46320:CDS |
| CAACAAGTTGATGGAGTGCA+TGG | 0.588754 | 1.3:+42883364 | MS.gene46320:CDS |
| TCAATGTATTTGTTCAAAGG+AGG | 0.593230 | 1.3:+42880660 | MS.gene46320:CDS |
| TCTCTGATTAAGCTCTCCAA+GGG | 0.594955 | 1.3:-42881259 | None:intergenic |
| TGGGGTAGACCAAACCGCAT+GGG | 0.599216 | 1.3:+42878355 | MS.gene46320:CDS |
| AATAAACAGGATGTCTTGCA+AGG | 0.599328 | 1.3:+42888672 | MS.gene46320:intron |
| GATGCCAAGAAAATAGTTGA+CGG | 0.600651 | 1.3:+42884579 | MS.gene46320:CDS |
| AGTTTGATGGACATGCTGGT+TGG | 0.601484 | 1.3:+42881668 | MS.gene46320:CDS |
| CAGCTGAATTTCTGTCCAGA+GGG | 0.602473 | 1.3:+42883251 | MS.gene46320:CDS |
| AAAGAAAACATACAAAGCAA+TGG | 0.602552 | 1.3:-42881395 | None:intergenic |
| AGCTTTATATGATGCAGCCA+GGG | 0.604106 | 1.3:+42878265 | MS.gene46320:CDS |
| TGCCTACTATTTAGTAAATG+GGG | 0.604581 | 1.3:+42877987 | MS.gene46320:CDS |
| CTTTGTTAATAAGTTTGAAG+GGG | 0.606418 | 1.3:+42881354 | MS.gene46320:CDS |
| GCTTTATTAAATACAGCACA+TGG | 0.606466 | 1.3:+42883203 | MS.gene46320:CDS |
| TAAAAGAACCTTAACTGACA+TGG | 0.607581 | 1.3:+42888791 | MS.gene46320:CDS |
| GAACTAATGGATGAGAGTTG+TGG | 0.607614 | 1.3:-42882930 | None:intergenic |
| GTCAAGCTCTAGTTCTGGAA+AGG | 0.610770 | 1.3:+42884933 | MS.gene46320:CDS |
| AAATGGGGCAGTTCAAGAAA+GGG | 0.611700 | 1.3:+42878002 | MS.gene46320:CDS |
| AGAAGCATTAAAATGCCGAT+AGG | 0.614251 | 1.3:-42888825 | None:intergenic |
| GCTCTAAAAGCTGCAGCTCG+AGG | 0.619043 | 1.3:-42881767 | None:intergenic |
| AACAGCCTGAAGTGTACGAA+TGG | 0.620134 | 1.3:+42881296 | MS.gene46320:CDS |
| TCGGGCTTTCTGGGTATAGG+AGG | 0.620870 | 1.3:-42886311 | None:intergenic |
| CATGATTTGTCCTCGAGCAG+TGG | 0.621789 | 1.3:+42878038 | MS.gene46320:CDS |
| TCAGTCAACGATAAAGACTC+GGG | 0.624949 | 1.3:+42884617 | MS.gene46320:CDS |
| GATCAAACCATCACACCGGT+TGG | 0.625270 | 1.3:+42886056 | MS.gene46320:CDS |
| GACAACATCTGAAAGCATTG+AGG | 0.629336 | 1.3:+42881889 | MS.gene46320:CDS |
| TATACCCAGAAAGCCCGACC+CGG | 0.629720 | 1.3:+42886316 | MS.gene46320:CDS |
| GATTTGATGATCAGTGATGA+TGG | 0.631118 | 1.3:+42888311 | MS.gene46320:CDS |
| GACCATAAATCGTCATCACG+TGG | 0.631638 | 1.3:+42878308 | MS.gene46320:CDS |
| GACAGTCATACCATCATCAG+AGG | 0.633736 | 1.3:-42878141 | None:intergenic |
| AGGACCTTGACCACTGCTCG+AGG | 0.635154 | 1.3:-42878048 | None:intergenic |
| TTTAGAGCAAACGTTGAGTG+GGG | 0.635179 | 1.3:+42881782 | MS.gene46320:CDS |
| TGATGCTGGAGGTGTTCAGA+TGG | 0.637713 | 1.3:+42888349 | MS.gene46320:CDS |
| TTAATGCAGAGATAAGACAT+TGG | 0.637829 | 1.3:+42884551 | MS.gene46320:intron |
| CTATCAGTCAGAAAATAATG+AGG | 0.638672 | 1.3:+42887852 | MS.gene46320:CDS |
| AGGTGATGAATTGACTGAGA+AGG | 0.640923 | 1.3:+42888755 | MS.gene46320:CDS |
| GCAGCTGAATTTCTGTCCAG+AGG | 0.641446 | 1.3:+42883250 | MS.gene46320:CDS |
| CACTTGTGGAACCATTCGAA+AGG | 0.643702 | 1.3:-42877938 | None:intergenic |
| GATGATGGTATGACTGTCAA+CGG | 0.647798 | 1.3:+42878146 | MS.gene46320:CDS |
| AGCATATAATAAGGAGTACA+CGG | 0.648767 | 1.3:-42880594 | None:intergenic |
| AAAGAACGACAATGTAAAGG+TGG | 0.656592 | 1.3:+42886112 | MS.gene46320:CDS |
| CGTTATAACGGTGATGCTGG+AGG | 0.661558 | 1.3:+42888338 | MS.gene46320:CDS |
| TGGAGTGCATGGATGAACTT+GGG | 0.666848 | 1.3:+42883375 | MS.gene46320:CDS |
| TATTACAGGTATCTTATTGG+GGG | 0.669200 | 1.3:+42882891 | MS.gene46320:intron |
| CATGGGCATAGTAAACCAGA+AGG | 0.671641 | 1.3:+42883121 | MS.gene46320:CDS |
| TGACAATGCCTTCACCCATG+CGG | 0.692935 | 1.3:-42878369 | None:intergenic |
| CAAACTAAAAGAAACGGGAA+CGG | 0.697326 | 1.3:+42888415 | MS.gene46320:CDS |
| ACAGCCTGCACCAAATGTAG+GGG | 0.706149 | 1.3:+42887741 | MS.gene46320:CDS |
| TAGTGATCAAACCATCACAC+CGG | 0.716684 | 1.3:+42886052 | MS.gene46320:CDS |
| GAAAGAAGCTGAATTCCTGG+AGG | 0.720772 | 1.3:+42885005 | MS.gene46320:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 42877923 | 42888851 | 42877923 | ID=MS.gene46320 |
| chr1.3 | mRNA | 42877923 | 42888851 | 42877923 | ID=MS.gene46320.t1;Parent=MS.gene46320 |
| chr1.3 | exon | 42877923 | 42878397 | 42877923 | ID=MS.gene46320.t1.exon1;Parent=MS.gene46320.t1 |
| chr1.3 | CDS | 42877923 | 42878397 | 42877923 | ID=cds.MS.gene46320.t1;Parent=MS.gene46320.t1 |
| chr1.3 | exon | 42880590 | 42880681 | 42880590 | ID=MS.gene46320.t1.exon2;Parent=MS.gene46320.t1 |
| chr1.3 | CDS | 42880590 | 42880681 | 42880590 | ID=cds.MS.gene46320.t1;Parent=MS.gene46320.t1 |
| chr1.3 | exon | 42881240 | 42881404 | 42881240 | ID=MS.gene46320.t1.exon3;Parent=MS.gene46320.t1 |
| chr1.3 | CDS | 42881240 | 42881404 | 42881240 | ID=cds.MS.gene46320.t1;Parent=MS.gene46320.t1 |
| chr1.3 | exon | 42881523 | 42881910 | 42881523 | ID=MS.gene46320.t1.exon4;Parent=MS.gene46320.t1 |
| chr1.3 | CDS | 42881523 | 42881910 | 42881523 | ID=cds.MS.gene46320.t1;Parent=MS.gene46320.t1 |
| chr1.3 | exon | 42882503 | 42882621 | 42882503 | ID=MS.gene46320.t1.exon5;Parent=MS.gene46320.t1 |
| chr1.3 | CDS | 42882503 | 42882621 | 42882503 | ID=cds.MS.gene46320.t1;Parent=MS.gene46320.t1 |
| chr1.3 | exon | 42882899 | 42882971 | 42882899 | ID=MS.gene46320.t1.exon6;Parent=MS.gene46320.t1 |
| chr1.3 | CDS | 42882899 | 42882971 | 42882899 | ID=cds.MS.gene46320.t1;Parent=MS.gene46320.t1 |
| chr1.3 | exon | 42883055 | 42883272 | 42883055 | ID=MS.gene46320.t1.exon7;Parent=MS.gene46320.t1 |
| chr1.3 | CDS | 42883055 | 42883272 | 42883055 | ID=cds.MS.gene46320.t1;Parent=MS.gene46320.t1 |
| chr1.3 | exon | 42883361 | 42883405 | 42883361 | ID=MS.gene46320.t1.exon8;Parent=MS.gene46320.t1 |
| chr1.3 | CDS | 42883361 | 42883405 | 42883361 | ID=cds.MS.gene46320.t1;Parent=MS.gene46320.t1 |
| chr1.3 | exon | 42884560 | 42884638 | 42884560 | ID=MS.gene46320.t1.exon9;Parent=MS.gene46320.t1 |
| chr1.3 | CDS | 42884560 | 42884638 | 42884560 | ID=cds.MS.gene46320.t1;Parent=MS.gene46320.t1 |
| chr1.3 | exon | 42884871 | 42885062 | 42884871 | ID=MS.gene46320.t1.exon10;Parent=MS.gene46320.t1 |
| chr1.3 | CDS | 42884871 | 42885062 | 42884871 | ID=cds.MS.gene46320.t1;Parent=MS.gene46320.t1 |
| chr1.3 | exon | 42886044 | 42886147 | 42886044 | ID=MS.gene46320.t1.exon11;Parent=MS.gene46320.t1 |
| chr1.3 | CDS | 42886044 | 42886147 | 42886044 | ID=cds.MS.gene46320.t1;Parent=MS.gene46320.t1 |
| chr1.3 | exon | 42886271 | 42886358 | 42886271 | ID=MS.gene46320.t1.exon12;Parent=MS.gene46320.t1 |
| chr1.3 | CDS | 42886271 | 42886358 | 42886271 | ID=cds.MS.gene46320.t1;Parent=MS.gene46320.t1 |
| chr1.3 | exon | 42887727 | 42887873 | 42887727 | ID=MS.gene46320.t1.exon13;Parent=MS.gene46320.t1 |
| chr1.3 | CDS | 42887727 | 42887873 | 42887727 | ID=cds.MS.gene46320.t1;Parent=MS.gene46320.t1 |
| chr1.3 | exon | 42888311 | 42888436 | 42888311 | ID=MS.gene46320.t1.exon14;Parent=MS.gene46320.t1 |
| chr1.3 | CDS | 42888311 | 42888436 | 42888311 | ID=cds.MS.gene46320.t1;Parent=MS.gene46320.t1 |
| chr1.3 | exon | 42888681 | 42888851 | 42888681 | ID=MS.gene46320.t1.exon15;Parent=MS.gene46320.t1 |
| chr1.3 | CDS | 42888681 | 42888851 | 42888681 | ID=cds.MS.gene46320.t1;Parent=MS.gene46320.t1 |
| Gene Sequence |
| Protein sequence |
