AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene053912


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053912.t1 MTR_5g053450 99.130 575 4 1 1 574 1 575 0.0 1170
MS.gene053912.t1 MTR_7g073530 39.340 394 198 9 105 464 86 472 1.47e-84 272
MS.gene053912.t1 MTR_8g005720 40.580 414 185 9 106 480 92 483 5.56e-79 258
MS.gene053912.t1 MTR_7g073540 32.124 193 87 5 272 464 1 149 3.49e-21 91.3
MS.gene053912.t1 MTR_7g073560 41.905 105 52 2 363 464 21 119 2.37e-17 79.3
MS.gene053912.t1 MTR_7g073610 41.905 105 52 2 363 464 21 119 2.37e-17 79.3
MS.gene053912.t1 MTR_4g007750 30.374 214 109 7 265 465 118 304 2.37e-15 77.8
MS.gene053912.t1 MTR_1g075610 27.830 212 111 6 268 465 126 309 6.35e-13 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053912.t1 AT1G68830 83.301 515 86 0 60 574 48 562 0.0 907
MS.gene053912.t1 AT5G01920 41.191 403 193 7 113 478 96 491 3.66e-88 281
MS.gene053912.t1 AT5G01920 41.191 403 193 7 113 478 96 491 3.66e-88 281
MS.gene053912.t1 AT2G38620 30.986 213 111 7 264 465 55 242 1.44e-15 77.0
MS.gene053912.t1 AT2G38620 27.566 341 178 14 150 465 8 304 1.69e-15 78.2

Find 119 sgRNAs with CRISPR-Local

Find 294 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCATCCATACTCTCATTTA+AGG 0.110339 5.3:+43061447 None:intergenic
TTGGTGCTTTGTCTTATCTT+TGG 0.201448 5.3:-43065449 MS.gene053912:CDS
CCTGGTGTTGTTCTTGCTTT+TGG 0.208005 5.3:-43065468 MS.gene053912:CDS
AAGTCTTTGGCCAAGGAAAA+TGG 0.232514 5.3:+43065704 None:intergenic
CTCCTGAATATTGGCTTATA+TGG 0.234852 5.3:-43063860 MS.gene053912:CDS
TACCTTTGAAGAGGGCTTCT+TGG 0.263410 5.3:+43064539 None:intergenic
TGGTGCTTTGTCTTATCTTT+GGG 0.266282 5.3:-43065448 MS.gene053912:CDS
CGAGCAACACAACAGGATTA+TGG 0.267381 5.3:-43062076 MS.gene053912:CDS
AGGGTTTGATTCTAAGTCTT+TGG 0.275538 5.3:+43065691 None:intergenic
GCCTTTGCCTTGCTTTATAT+CGG 0.279262 5.3:+43062191 None:intergenic
TTGTGCACCAGCCTTCTTCT+TGG 0.291467 5.3:+43061519 None:intergenic
AATATGGTGCTGTAGAAATT+TGG 0.292645 5.3:-43064088 MS.gene053912:CDS
ATTGACGGTTGAATTGTATA+AGG 0.298216 5.3:+43062347 None:intergenic
CTTTGTGACTCCAATTCCTT+TGG 0.309079 5.3:+43065755 None:intergenic
CAGGTCGAAACATTGATTCT+TGG 0.311234 5.3:-43063477 MS.gene053912:CDS
TTGAAGAAGGCGACTGAATA+TGG 0.312551 5.3:-43064104 MS.gene053912:CDS
TACAACTTTCATTCCTCTCT+TGG 0.323203 5.3:+43061382 None:intergenic
AAGAGACTACCAACATTATA+TGG 0.329901 5.3:+43063786 None:intergenic
CATTCCTAAAGAGTTTCTTT+TGG 0.331479 5.3:-43063148 MS.gene053912:CDS
GGATCCAAAAGAAACTCTTT+AGG 0.332998 5.3:+43063144 None:intergenic
TGTGCACCAGCCTTCTTCTT+GGG 0.348907 5.3:+43061520 None:intergenic
CAAGTGGATTATTCAGCTTA+TGG 0.349059 5.3:-43062044 MS.gene053912:CDS
CAAAGAAGACTCCTGAATAT+TGG 0.362523 5.3:-43063869 MS.gene053912:CDS
CTGCACTCTCTCCAGTCTTA+TGG 0.363671 5.3:-43062896 MS.gene053912:CDS
ATTCAGCTTATGGCAAAATC+AGG 0.382255 5.3:-43062034 MS.gene053912:CDS
ACATTCAAAATAATTGATCT+TGG 0.382791 5.3:-43063204 MS.gene053912:CDS
CTCCATATAAGCCAATATTC+AGG 0.386303 5.3:+43063858 None:intergenic
TTGGATTTAGATGGCGGAAT+AGG 0.392942 5.3:-43062238 MS.gene053912:CDS
CAACACCAACACCTACAAAA+AGG 0.400926 5.3:+43065574 None:intergenic
ACTGTTGCAACCAAAGGAAT+TGG 0.403712 5.3:-43065765 MS.gene053912:CDS
TTTGAGCTGTTGGATTTAGA+TGG 0.405059 5.3:-43062247 MS.gene053912:CDS
AAGCCTTCTTTGTCAAAGTA+AGG 0.405199 5.3:+43062142 None:intergenic
CTTTGACAAAGAAGGCTTGT+TGG 0.405734 5.3:-43062137 MS.gene053912:CDS
ACAAGATTTGCCAAAGGGAT+TGG 0.407482 5.3:-43063448 MS.gene053912:CDS
TGGTGGTTGTTCATTGTTTG+AGG 0.410407 5.3:+43065671 None:intergenic
GCTACACCTGGTGTTGCTCC+TGG 0.415742 5.3:-43065426 MS.gene053912:CDS
CATCCTTACTTTGACAAAGA+AGG 0.421240 5.3:-43062145 MS.gene053912:CDS
ACAACTTTCATTCCTCTCTT+GGG 0.423424 5.3:+43061383 None:intergenic
GGAGAGAGTGCAGTTGCAAC+TGG 0.425506 5.3:+43062906 None:intergenic
TGGACTTCCATGCACTGTTA+TGG 0.431565 5.3:-43065553 MS.gene053912:CDS
TCTTATCTTTGGGCTACACC+TGG 0.433977 5.3:-43065438 MS.gene053912:CDS
ATCACCACAAAAGCCATTCA+TGG 0.434279 5.3:-43065627 MS.gene053912:CDS
TAGGAGAGGCTTTGAGCTGT+TGG 0.438205 5.3:-43062257 MS.gene053912:CDS
TGGCTTATATGGAGGTTTGA+AGG 0.443769 5.3:-43063849 MS.gene053912:CDS
AGTCACACCTCTTTAATTGA+CGG 0.447260 5.3:+43062332 None:intergenic
GGCTTGAATGTTACTGTCCC+TGG 0.447608 5.3:-43065486 MS.gene053912:CDS
GGCTTATATGGAGGTTTGAA+GGG 0.452837 5.3:-43063848 MS.gene053912:CDS
ATTTAGATGGCGGAATAGGA+TGG 0.466045 5.3:-43062234 MS.gene053912:CDS
CTCAACTGGTATTGTGCATA+GGG 0.466971 5.3:-43063361 MS.gene053912:CDS
CTATTATCAGAGCGTAAGCC+AGG 0.468233 5.3:+43062370 None:intergenic
TTAGACGGTCTTCACTCAAC+TGG 0.479359 5.3:-43063375 MS.gene053912:CDS
GGCAAAATCAGGAACAGAAA+AGG 0.483650 5.3:-43062023 MS.gene053912:CDS
GGATGCGTACTCTAAGTTCC+TGG 0.484595 5.3:+43061975 None:intergenic
AAAGCATTTGGTGGAGGAGA+TGG 0.488211 5.3:-43061408 MS.gene053912:CDS
CTTGCACTGCATGGTGGTGG+TGG 0.491350 5.3:+43065654 None:intergenic
AATAATAATACCTTTGAAGA+GGG 0.497156 5.3:+43064531 None:intergenic
AATCCATTCAGCACCATGAA+TGG 0.498174 5.3:+43065614 None:intergenic
GGTGGTTGTTCATTGTTTGA+GGG 0.499043 5.3:+43065672 None:intergenic
CTCGATGTGGCGCTGAACTT+AGG 0.499449 5.3:-43062276 MS.gene053912:CDS
GGAAATTGTGCCCAAGAAGA+AGG 0.504841 5.3:-43061530 MS.gene053912:CDS
CTGAATATTGGCTTATATGG+AGG 0.508004 5.3:-43063857 MS.gene053912:CDS
CCAAAAGCAAGAACAACACC+AGG 0.508205 5.3:+43065468 None:intergenic
AAGCCATTCATGGTGCTGAA+TGG 0.509311 5.3:-43065617 MS.gene053912:CDS
ACTCAACTGGTATTGTGCAT+AGG 0.510063 5.3:-43063362 MS.gene053912:CDS
TGGTCTAATATTCCTCCAAA+TGG 0.512216 5.3:-43062733 MS.gene053912:intron
AATTCCTTTGGTTGCAACAG+TGG 0.512321 5.3:+43065767 None:intergenic
GTTTAGACCTACTTTCAGAA+AGG 0.516126 5.3:-43065364 MS.gene053912:intron
AGTTTAACCTGCCATAAGAC+TGG 0.523445 5.3:+43062885 None:intergenic
GTGCTCATAATGTACTGCTC+TGG 0.529003 5.3:+43062954 None:intergenic
GAGGTACAAGATTTGCCAAA+GGG 0.534473 5.3:-43063453 MS.gene053912:CDS
ACATTCAAGCCACTAGACTT+AGG 0.534526 5.3:+43065498 None:intergenic
AATTCAACCGTCAATTAAAG+AGG 0.535042 5.3:-43062339 MS.gene053912:CDS
TAACAAACCTTTCTGAAAGT+AGG 0.543091 5.3:+43065357 None:intergenic
CTGTAGATATCAAATCTGTC+AGG 0.543319 5.3:+43062759 None:intergenic
AATCTTGCACTGCATGGTGG+TGG 0.543569 5.3:+43065651 None:intergenic
TGATTCTAAGTCTTTGGCCA+AGG 0.549378 5.3:+43065697 None:intergenic
CTTCAGCTCTTAAAGTGCAA+AGG 0.564633 5.3:-43061483 MS.gene053912:CDS
ACTCTCTCCAGTCTTATGGC+AGG 0.570820 5.3:-43062892 MS.gene053912:intron
AGCCAAGAAGCCCTCTTCAA+AGG 0.573453 5.3:-43064541 MS.gene053912:intron
ATTTGATACTCACCATTTGG+AGG 0.574767 5.3:+43062721 None:intergenic
CCACACTCCATAACAGTGCA+TGG 0.576846 5.3:+43065546 None:intergenic
ACTGGAGCTGAGGGTGCAGA+TGG 0.578510 5.3:+43062924 None:intergenic
AGATTTGATATCTACAGTAC+TGG 0.579644 5.3:-43062753 MS.gene053912:CDS
ATTGTGCCCAAGAAGAAGGC+TGG 0.580227 5.3:-43061526 MS.gene053912:CDS
ATTCACTGAAGCTCAACTCC+AGG 0.580949 5.3:-43061993 MS.gene053912:CDS
CGAAACATTGATTCTTGGTG+AGG 0.582143 5.3:-43063472 MS.gene053912:CDS
TTTAGATGGCGGAATAGGAT+GGG 0.582248 5.3:-43062233 MS.gene053912:CDS
AAAACAGGAAAAGCATTTGG+TGG 0.582619 5.3:-43061417 MS.gene053912:CDS
GAGCTGTTGGATTTAGATGG+CGG 0.583483 5.3:-43062244 MS.gene053912:CDS
ACAGGAAAAGCATTTGGTGG+AGG 0.584401 5.3:-43061414 MS.gene053912:CDS
GTGATGAATCTTGCACTGCA+TGG 0.588583 5.3:+43065645 None:intergenic
ATGGCCACTGTTGCAACCAA+AGG 0.589790 5.3:-43065771 MS.gene053912:CDS
GTGACTATGACTTGGTTGCA+TGG 0.590726 5.3:-43062315 MS.gene053912:CDS
TGCAGTTGCAACTGGAGCTG+AGG 0.594722 5.3:+43062914 None:intergenic
CAATAATAATACCTTTGAAG+AGG 0.595715 5.3:+43064530 None:intergenic
AGGTGACTTAGTCTTGAAGA+AGG 0.596316 5.3:-43064117 MS.gene053912:CDS
CATAAGCTGAATAATCCACT+TGG 0.599152 5.3:+43062045 None:intergenic
GCTTATATGGAGGTTTGAAG+GGG 0.600363 5.3:-43063847 MS.gene053912:CDS
ACTCTGCAATAGATCAGCTA+AGG 0.600527 5.3:+43063818 None:intergenic
AGCACTCTTCCTAAGTCTAG+TGG 0.608042 5.3:-43065507 MS.gene053912:CDS
AAAATCAGGAACAGAAAAGG+AGG 0.609977 5.3:-43062020 MS.gene053912:CDS
GCTGCTACAGACTTGCGAGT+TGG 0.612827 5.3:-43063180 MS.gene053912:CDS
CAATGGTCCGATATAAAGCA+AGG 0.622058 5.3:-43062198 MS.gene053912:CDS
CCATGCACTGTTATGGAGTG+TGG 0.622158 5.3:-43065546 MS.gene053912:CDS
TCCGATATAAAGCAAGGCAA+AGG 0.623569 5.3:-43062192 MS.gene053912:CDS
TATCTATCATGCAAAATCTG+AGG 0.626573 5.3:-43062111 MS.gene053912:CDS
GCAGTTGCAACTGGAGCTGA+GGG 0.634177 5.3:+43062915 None:intergenic
TCAGGAACAGAAAAGGAGGG+TGG 0.634221 5.3:-43062016 MS.gene053912:CDS
TCAGAGAAAATAATGTTCTG+CGG 0.642515 5.3:+43063330 None:intergenic
TGAGGTACAAGATTTGCCAA+AGG 0.643878 5.3:-43063454 MS.gene053912:CDS
CAAAAGCAAGAACAACACCA+GGG 0.646990 5.3:+43065469 None:intergenic
GAGGAGATGGATCCCAAGAG+AGG 0.662184 5.3:-43061395 MS.gene053912:CDS
AAAGAGGTGTGACTATGACT+TGG 0.672074 5.3:-43062323 MS.gene053912:CDS
ATGAATCTTGCACTGCATGG+TGG 0.677136 5.3:+43065648 None:intergenic
AAAACTGTGGAGCCTCGATG+TGG 0.677269 5.3:-43062289 MS.gene053912:CDS
TGTGGCGCTGAACTTAGGAG+AGG 0.694905 5.3:-43062271 MS.gene053912:CDS
AAATCAGGAACAGAAAAGGA+GGG 0.696429 5.3:-43062019 MS.gene053912:CDS
ATTATGGAGAAGCTGCCAAG+TGG 0.696799 5.3:-43062060 MS.gene053912:CDS
CTAAGTTCAGCGCCACATCG+AGG 0.705406 5.3:+43062277 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAATGATCAATAAA+AGG + chr5.3:43065595-43065614 None:intergenic 10.0%
!! ATGATATATATTCTATTTAT+TGG - chr5.3:43062745-43062764 MS.gene053912:CDS 10.0%
!!! AAAAAAAAATTTTCAGTATT+AGG + chr5.3:43065210-43065229 None:intergenic 10.0%
!!! AAATAAACAAAATTTGATTT+TGG + chr5.3:43065441-43065460 None:intergenic 10.0%
!! AAATTTAAATAGAACTTTCT+CGG + chr5.3:43063594-43063613 None:intergenic 15.0%
!! AATAGAATAGAGATAATTTA+TGG - chr5.3:43062397-43062416 MS.gene053912:intron 15.0%
!! ATTATTTATAGATTCTCTTA+AGG - chr5.3:43062892-43062911 MS.gene053912:intron 15.0%
!! TATTATTATTGTTATGGATA+TGG - chr5.3:43062643-43062662 MS.gene053912:intron 15.0%
!! TCTGATACTATATTAAAATT+TGG - chr5.3:43062330-43062349 MS.gene053912:CDS 15.0%
!! TGATTAATAGATACATTATT+AGG - chr5.3:43064102-43064121 MS.gene053912:CDS 15.0%
!!! ATTTAGTTTTTTTTCTATCA+AGG - chr5.3:43062044-43062063 MS.gene053912:CDS 15.0%
!!! CAATTTTGATCATTTTATAT+AGG - chr5.3:43064763-43064782 MS.gene053912:intron 15.0%
!!! GCTAAATTATTAAATGTTTT+TGG - chr5.3:43062770-43062789 MS.gene053912:CDS 15.0%
!!! GTAGTCTAAAATAAAAATAA+AGG + chr5.3:43061835-43061854 None:intergenic 15.0%
!!! TCAAATTTTGTTTATTTTAC+TGG - chr5.3:43065444-43065463 MS.gene053912:CDS 15.0%
!!! TTTAATTTCTATATTAACCA+TGG - chr5.3:43063920-43063939 MS.gene053912:intron 15.0%
!!! TTTTGTAGTTAAAATGATTA+TGG - chr5.3:43064595-43064614 MS.gene053912:CDS 15.0%
!!! TTTTTATGAAATAGTATTTC+AGG - chr5.3:43062488-43062507 MS.gene053912:intron 15.0%
!! AAATAATTTAGCGTCTATTT+AGG + chr5.3:43062271-43062290 None:intergenic 20.0%
!! AAGGGTTATAAATATGTTTA+TGG + chr5.3:43065471-43065490 None:intergenic 20.0%
!! ACATTCAAAATAATTGATCT+TGG - chr5.3:43063957-43063976 MS.gene053912:intron 20.0%
!! ATAGAAATTAAAGCATAACT+TGG + chr5.3:43063912-43063931 None:intergenic 20.0%
!! CATAATATAATAACAAGACT+CGG + chr5.3:43062728-43062747 None:intergenic 20.0%
!! CATCAAACACTTAATTTATT+AGG + chr5.3:43061889-43061908 None:intergenic 20.0%
!!! AATAATAATACCTTTGAAGA+GGG + chr5.3:43062633-43062652 None:intergenic 20.0%
!!! ACTGAAAATTTTTTTTTAGC+TGG - chr5.3:43065213-43065232 MS.gene053912:intron 20.0%
!!! ATTTAAATTTTATGCTTCCT+TGG - chr5.3:43063604-43063623 MS.gene053912:intron 20.0%
!!! CAAAGGTATTATTATTGTTA+TGG - chr5.3:43062637-43062656 MS.gene053912:intron 20.0%
!!! GTTTCATATATTTCTAATCA+TGG - chr5.3:43064670-43064689 MS.gene053912:intron 20.0%
!!! TTATGACTTATGATACTTTT+TGG - chr5.3:43063006-43063025 MS.gene053912:intron 20.0%
!!! TTATTTTTACTAACTTACAG+AGG + chr5.3:43062135-43062154 None:intergenic 20.0%
!!! TTTTTTTTTTTTTGCGTTGT+AGG - chr5.3:43065610-43065629 MS.gene053912:CDS 20.0%
! AAAAACCTTAAATGAGAGTA+TGG - chr5.3:43065709-43065728 MS.gene053912:CDS 25.0%
! AAATCATTTAAACAATGGCA+AGG - chr5.3:43064693-43064712 MS.gene053912:intron 25.0%
! AAATTTAGTGACGAAATTGA+AGG - chr5.3:43062439-43062458 MS.gene053912:intron 25.0%
! ACAAACATATCAAAAAAACC+AGG + chr5.3:43061756-43061775 None:intergenic 25.0%
! AGATAATTTATGGACCAAAT+AGG - chr5.3:43062407-43062426 MS.gene053912:intron 25.0%
! ATGATGACTATGACAATAAA+AGG + chr5.3:43065490-43065509 None:intergenic 25.0%
! ATTATTTGATACTCACCATT+TGG + chr5.3:43064446-43064465 None:intergenic 25.0%
! CATGGAAATCATTTAAACAA+TGG - chr5.3:43064688-43064707 MS.gene053912:intron 25.0%
! TACCAGTTTGATCATATAAT+TGG + chr5.3:43064729-43064748 None:intergenic 25.0%
! TATAGTGTTTCGTAAAATAG+TGG - chr5.3:43061999-43062018 MS.gene053912:CDS 25.0%
! TCAACTATGAAGGAAAAAAA+GGG + chr5.3:43065570-43065589 None:intergenic 25.0%
! TGATGACTATGACAATAAAA+GGG + chr5.3:43065489-43065508 None:intergenic 25.0%
! TGGTTATTTATGATCTCTAA+AGG - chr5.3:43063624-43063643 MS.gene053912:intron 25.0%
! TTAGAGATCATAAATAACCA+AGG + chr5.3:43063624-43063643 None:intergenic 25.0%
!! AACAAAAAATCCATTTTCCT+TGG - chr5.3:43061447-43061466 MS.gene053912:CDS 25.0%
!! ACATGTGCTATTATTAATGA+TGG + chr5.3:43064317-43064336 None:intergenic 25.0%
!! AGAGATTTTCCATATAATGT+TGG - chr5.3:43063366-43063385 MS.gene053912:CDS 25.0%
!! CAATAATAATACCTTTGAAG+AGG + chr5.3:43062634-43062653 None:intergenic 25.0%
!! TGTCATTTCTTTAGATACAT+AGG - chr5.3:43065256-43065275 MS.gene053912:intron 25.0%
!!! AAGGAAAATGGATTTTTTGT+TGG + chr5.3:43061448-43061467 None:intergenic 25.0%
!!! AGGAAAATGGATTTTTTGTT+GGG + chr5.3:43061447-43061466 None:intergenic 25.0%
!!! TTTTGTTTATGGTTTTCTTG+AGG - chr5.3:43063140-43063159 MS.gene053912:intron 25.0%
AAAATGAAGAACCAACTTGT+TGG - chr5.3:43062928-43062947 MS.gene053912:CDS 30.0%
AAGAGACTACCAACATTATA+TGG + chr5.3:43063378-43063397 None:intergenic 30.0%
AAGCTATAAGCTCAAATTTG+TGG - chr5.3:43062231-43062250 MS.gene053912:CDS 30.0%
AATTCAACCGTCAATTAAAG+AGG - chr5.3:43064822-43064841 MS.gene053912:intron 30.0%
AGATTTGATATCTACAGTAC+TGG - chr5.3:43064408-43064427 MS.gene053912:intron 30.0%
AGCCAATTATATGATCAAAC+TGG - chr5.3:43064724-43064743 MS.gene053912:intron 30.0%
AGTCTCTTGTGTAAAAAACA+GGG + chr5.3:43065311-43065330 None:intergenic 30.0%
ATTGACGGTTGAATTGTATA+AGG + chr5.3:43064817-43064836 None:intergenic 30.0%
GTATCTAAAGAAATGACATG+TGG + chr5.3:43065254-43065273 None:intergenic 30.0%
GTCAACTATGAAGGAAAAAA+AGG + chr5.3:43065571-43065590 None:intergenic 30.0%
TAAGTTGTTAAGTGACTGAA+AGG + chr5.3:43065357-43065376 None:intergenic 30.0%
TATCTATCATGCAAAATCTG+AGG - chr5.3:43065050-43065069 MS.gene053912:intron 30.0%
TCAGAGAAAATAATGTTCTG+CGG + chr5.3:43063834-43063853 None:intergenic 30.0%
TCATAGTCATCATCTTCTTA+GGG - chr5.3:43065497-43065516 MS.gene053912:CDS 30.0%
TGTTATAAGCTAGCTAATAG+CGG - chr5.3:43061956-43061975 MS.gene053912:intron 30.0%
TGTTTCAGAAACATAGTGAA+GGG + chr5.3:43063534-43063553 None:intergenic 30.0%
TTCTTAGATATGATGAAGTC+AGG - chr5.3:43062680-43062699 MS.gene053912:intron 30.0%
! AATTTTCACTCTCTCCTATT+TGG + chr5.3:43062424-43062443 None:intergenic 30.0%
! ATGTTTCGACCTGAAATTTT+TGG + chr5.3:43063677-43063696 None:intergenic 30.0%
! ATTTTCATCCCTCCAAAAAT+AGG + chr5.3:43065398-43065417 None:intergenic 30.0%
! CAGAACATTATTTTCTCTGA+AGG - chr5.3:43063834-43063853 MS.gene053912:CDS 30.0%
! CATTCCTAAAGAGTTTCTTT+TGG - chr5.3:43064013-43064032 MS.gene053912:intron 30.0%
! CATTTTATATAGGCATTTCC+TGG - chr5.3:43064773-43064792 MS.gene053912:intron 30.0%
! GTGCTATTATTAATGATGGA+TGG + chr5.3:43064313-43064332 None:intergenic 30.0%
! TAACAAACCTTTCTGAAAGT+AGG + chr5.3:43061807-43061826 None:intergenic 30.0%
! TATTAGGAGTGTAACAGATT+AGG + chr5.3:43061873-43061892 None:intergenic 30.0%
! TTCTTGAGGTAAGGATTTTT+GGG - chr5.3:43063154-43063173 MS.gene053912:CDS 30.0%
! TTGTCATTTACTATTTGCAG+AGG - chr5.3:43063265-43063284 MS.gene053912:intron 30.0%
! TTTATGGTTTTCTTGAGGTA+AGG - chr5.3:43063145-43063164 MS.gene053912:CDS 30.0%
! TTTCTTGAGGTAAGGATTTT+TGG - chr5.3:43063153-43063172 MS.gene053912:CDS 30.0%
! TTTTCATCCCTCCAAAAATA+GGG + chr5.3:43065397-43065416 None:intergenic 30.0%
! TTTTTCTATCAAGGCTACAA+AGG - chr5.3:43062053-43062072 MS.gene053912:CDS 30.0%
!! AATATGGTGCTGTAGAAATT+TGG - chr5.3:43063073-43063092 MS.gene053912:intron 30.0%
!! ATAAAAGGTGTCAACTATGA+AGG + chr5.3:43065580-43065599 None:intergenic 30.0%
!! CTATTTGTTATTGCTGAGAA+CGG - chr5.3:43062519-43062538 MS.gene053912:intron 30.0%
!! TTGTTCTTGCTTTTGTTGAA+AGG - chr5.3:43061772-43061791 MS.gene053912:intron 30.0%
!!! GGAAAATGGATTTTTTGTTG+GGG + chr5.3:43061446-43061465 None:intergenic 30.0%
AAAATCAGGAACAGAAAAGG+AGG - chr5.3:43065141-43065160 MS.gene053912:intron 35.0%
AAATCAGGAACAGAAAAGGA+GGG - chr5.3:43065142-43065161 MS.gene053912:intron 35.0%
AAGCCTTCTTTGTCAAAGTA+AGG + chr5.3:43065022-43065041 None:intergenic 35.0%
AGGGTTTGATTCTAAGTCTT+TGG + chr5.3:43061473-43061492 None:intergenic 35.0%
AGTCACACCTCTTTAATTGA+CGG + chr5.3:43064832-43064851 None:intergenic 35.0%
ATAAGCTCATGAGAAAGTGA+CGG - chr5.3:43062158-43062177 MS.gene053912:CDS 35.0%
ATTCAGCTTATGGCAAAATC+AGG - chr5.3:43065127-43065146 MS.gene053912:intron 35.0%
ATTTGATACTCACCATTTGG+AGG + chr5.3:43064443-43064462 None:intergenic 35.0%
CAAAGAAGACTCCTGAATAT+TGG - chr5.3:43063292-43063311 MS.gene053912:intron 35.0%
CACATGATATACCAACAAGT+TGG + chr5.3:43062942-43062961 None:intergenic 35.0%
CAGTCTCTTGTGTAAAAAAC+AGG + chr5.3:43065312-43065331 None:intergenic 35.0%
CATAAGCTGAATAATCCACT+TGG + chr5.3:43065119-43065138 None:intergenic 35.0%
CATAGTCATCATCTTCTTAG+GGG - chr5.3:43065498-43065517 MS.gene053912:CDS 35.0%
CATCCTTACTTTGACAAAGA+AGG - chr5.3:43065016-43065035 MS.gene053912:intron 35.0%
CTATATTAACCATGGTCTCA+GGG - chr5.3:43063928-43063947 MS.gene053912:intron 35.0%
CTCATCCATACTCTCATTTA+AGG + chr5.3:43065717-43065736 None:intergenic 35.0%
CTCCATATAAGCCAATATTC+AGG + chr5.3:43063306-43063325 None:intergenic 35.0%
CTGTAGATATCAAATCTGTC+AGG + chr5.3:43064405-43064424 None:intergenic 35.0%
CTTGTGTAAAAAACAGGGTA+AGG + chr5.3:43065306-43065325 None:intergenic 35.0%
GGATCCAAAAGAAACTCTTT+AGG + chr5.3:43064020-43064039 None:intergenic 35.0%
GTATCACTGTCTTACTTGTT+TGG - chr5.3:43063177-43063196 MS.gene053912:CDS 35.0%
GTCATAGTCATCATCTTCTT+AGG - chr5.3:43065496-43065515 MS.gene053912:CDS 35.0%
GTGTTTCAGAAACATAGTGA+AGG + chr5.3:43063535-43063554 None:intergenic 35.0%
GTTTAGACCTACTTTCAGAA+AGG - chr5.3:43061797-43061816 MS.gene053912:intron 35.0%
TAAACACAAACTTCGATCAG+TGG + chr5.3:43064073-43064092 None:intergenic 35.0%
TACTTGTTTGGAGAAATCGA+AGG - chr5.3:43063189-43063208 MS.gene053912:CDS 35.0%
TCTATATTAACCATGGTCTC+AGG - chr5.3:43063927-43063946 MS.gene053912:intron 35.0%
TGGTCTAATATTCCTCCAAA+TGG - chr5.3:43064428-43064447 MS.gene053912:intron 35.0%
TGGTGCTTTGTCTTATCTTT+GGG - chr5.3:43061713-43061732 MS.gene053912:intron 35.0%
TGTGTTTGTGAGATTTCAGT+TGG - chr5.3:43062958-43062977 MS.gene053912:CDS 35.0%
TTATCAGTCTTTCATCTGTG+AGG - chr5.3:43063485-43063504 MS.gene053912:intron 35.0%
TTGACTAAAAAAGACCCGTT+TGG + chr5.3:43062187-43062206 None:intergenic 35.0%
TTGCTGAGAACGGTTTATTA+TGG - chr5.3:43062529-43062548 MS.gene053912:intron 35.0%
TTTGAGCTGTTGGATTTAGA+TGG - chr5.3:43064914-43064933 MS.gene053912:intron 35.0%
! AAGAGTTTCTTTTGGATCCA+AGG - chr5.3:43064021-43064040 MS.gene053912:intron 35.0%
! CAACTTTTGTTCGCATTAGA+CGG - chr5.3:43063771-43063790 MS.gene053912:intron 35.0%
! GCGTCTATTTAGGATCTATT+TGG + chr5.3:43062261-43062280 None:intergenic 35.0%
! GTTTATCAAGCCTGTTTTGT+CGG + chr5.3:43062373-43062392 None:intergenic 35.0%
! TCTTGAGGTAAGGATTTTTG+GGG - chr5.3:43063155-43063174 MS.gene053912:CDS 35.0%
! TTGGTGCTTTGTCTTATCTT+TGG - chr5.3:43061712-43061731 MS.gene053912:intron 35.0%
! TTTTCTCTTTCCAATCCCTT+TGG + chr5.3:43063726-43063745 None:intergenic 35.0%
!! AAAACAGGAAAAGCATTTGG+TGG - chr5.3:43065744-43065763 MS.gene053912:CDS 35.0%
!! AGCTGTGCAGATTTTGTTTA+TGG - chr5.3:43063129-43063148 MS.gene053912:intron 35.0%
!! CAAGTGGATTATTCAGCTTA+TGG - chr5.3:43065117-43065136 MS.gene053912:intron 35.0%
!! CTCCTGAATATTGGCTTATA+TGG - chr5.3:43063301-43063320 MS.gene053912:intron 35.0%
!! CTGAATATTGGCTTATATGG+AGG - chr5.3:43063304-43063323 MS.gene053912:intron 35.0%
!! GCAAAAACAGGAAAAGCATT+TGG - chr5.3:43065741-43065760 MS.gene053912:CDS 35.0%
!! TGAGATTTCAGTTGGTCTTT+GGG - chr5.3:43062966-43062985 MS.gene053912:CDS 35.0%
!!! GATTTTTTGTTGGGGTTGTA+GGG + chr5.3:43061438-43061457 None:intergenic 35.0%
!!! GGCAGGATGATTTTGTTTTA+GGG - chr5.3:43062550-43062569 MS.gene053912:intron 35.0%
!!! TGATACTTTTTGGTTCTCAC+TGG - chr5.3:43063016-43063035 MS.gene053912:intron 35.0%
!!! TGGCAGGATGATTTTGTTTT+AGG - chr5.3:43062549-43062568 MS.gene053912:intron 35.0%
!!! TTTGTTTTAGGGAAGAAGCT+GGG - chr5.3:43062561-43062580 MS.gene053912:intron 35.0%
!!! TTTTGTTTTAGGGAAGAAGC+TGG - chr5.3:43062560-43062579 MS.gene053912:intron 35.0%
AAGTCTTTGGCCAAGGAAAA+TGG + chr5.3:43061460-43061479 None:intergenic 40.0%
AATCCATTCAGCACCATGAA+TGG + chr5.3:43061550-43061569 None:intergenic 40.0%
AATTCCTTTGGTTGCAACAG+TGG + chr5.3:43061397-43061416 None:intergenic 40.0%
ACAAGATTTGCCAAAGGGAT+TGG - chr5.3:43063713-43063732 MS.gene053912:intron 40.0%
ACATTCAAGCCACTAGACTT+AGG + chr5.3:43061666-43061685 None:intergenic 40.0%
ACTCAACTGGTATTGTGCAT+AGG - chr5.3:43063799-43063818 MS.gene053912:intron 40.0%
ACTCTGCAATAGATCAGCTA+AGG + chr5.3:43063346-43063365 None:intergenic 40.0%
ACTGTTGCAACCAAAGGAAT+TGG - chr5.3:43061396-43061415 MS.gene053912:CDS 40.0%
AGAAAGTGACGGTTACCAAA+CGG - chr5.3:43062169-43062188 MS.gene053912:CDS 40.0%
AGTTTAACCTGCCATAAGAC+TGG + chr5.3:43064279-43064298 None:intergenic 40.0%
ATCACCACAAAAGCCATTCA+TGG - chr5.3:43061534-43061553 MS.gene053912:intron 40.0%
CAAAAGCAAGAACAACACCA+GGG + chr5.3:43061695-43061714 None:intergenic 40.0%
CAACACCAACACCTACAAAA+AGG + chr5.3:43061590-43061609 None:intergenic 40.0%
CAATGGTCCGATATAAAGCA+AGG - chr5.3:43064963-43064982 MS.gene053912:intron 40.0%
CTCAACTGGTATTGTGCATA+GGG - chr5.3:43063800-43063819 MS.gene053912:CDS 40.0%
CTTCAGCTCTTAAAGTGCAA+AGG - chr5.3:43065678-43065697 MS.gene053912:CDS 40.0%
CTTCCTAACTTGAGTCATCA+AGG + chr5.3:43064130-43064149 None:intergenic 40.0%
CTTGGTTGTTAGTTGTTGGT+CGG + chr5.3:43062835-43062854 None:intergenic 40.0%
CTTTGACAAAGAAGGCTTGT+TGG - chr5.3:43065024-43065043 MS.gene053912:intron 40.0%
CTTTGTGACTCCAATTCCTT+TGG + chr5.3:43061409-43061428 None:intergenic 40.0%
GAAGGATTGTACACAACATG+AGG + chr5.3:43064169-43064188 None:intergenic 40.0%
GAGGTACAAGATTTGCCAAA+GGG - chr5.3:43063708-43063727 MS.gene053912:intron 40.0%
GCCTTTGCCTTGCTTTATAT+CGG + chr5.3:43064973-43064992 None:intergenic 40.0%
GCTTATATGGAGGTTTGAAG+GGG - chr5.3:43063314-43063333 MS.gene053912:intron 40.0%
GGCAAAATCAGGAACAGAAA+AGG - chr5.3:43065138-43065157 MS.gene053912:intron 40.0%
GGCTTATATGGAGGTTTGAA+GGG - chr5.3:43063313-43063332 MS.gene053912:intron 40.0%
GGTGGTTGTTCATTGTTTGA+GGG + chr5.3:43061492-43061511 None:intergenic 40.0%
GTTAAGTGACTGAAAGGTCA+CGG + chr5.3:43065351-43065370 None:intergenic 40.0%
GTTTCAACCAATGGACACAT+GGG + chr5.3:43062305-43062324 None:intergenic 40.0%
TCCGATATAAAGCAAGGCAA+AGG - chr5.3:43064969-43064988 MS.gene053912:intron 40.0%
TGAGAACGGTTTATTATGGC+AGG - chr5.3:43062533-43062552 MS.gene053912:intron 40.0%
TGAGGTACAAGATTTGCCAA+AGG - chr5.3:43063707-43063726 MS.gene053912:intron 40.0%
TGATTCTAAGTCTTTGGCCA+AGG + chr5.3:43061467-43061486 None:intergenic 40.0%
TGGCTTATATGGAGGTTTGA+AGG - chr5.3:43063312-43063331 MS.gene053912:intron 40.0%
TGGTGGTTGTTCATTGTTTG+AGG + chr5.3:43061493-43061512 None:intergenic 40.0%
TTAAGTGACTGAAAGGTCAC+GGG + chr5.3:43065350-43065369 None:intergenic 40.0%
TTACACAAGAGACTGTTTCC+AGG - chr5.3:43065317-43065336 MS.gene053912:intron 40.0%
TTGAAGAAGGCGACTGAATA+TGG - chr5.3:43063057-43063076 MS.gene053912:intron 40.0%
! AAAGAGGTGTGACTATGACT+TGG - chr5.3:43064838-43064857 MS.gene053912:intron 40.0%
! AAAGTCATCTGAAGCTACCT+TGG + chr5.3:43064041-43064060 None:intergenic 40.0%
! AAGGCTTGGTTGTTAGTTGT+TGG + chr5.3:43062839-43062858 None:intergenic 40.0%
! ATGGGAACTTTTGACGTCAA+TGG - chr5.3:43064946-43064965 MS.gene053912:intron 40.0%
! CACAACCTTTTTGTAGGTGT+TGG - chr5.3:43061582-43061601 MS.gene053912:intron 40.0%
! GATCCTTGATGACTCAAGTT+AGG - chr5.3:43064124-43064143 MS.gene053912:intron 40.0%
! GTGATGGTGCCAAAAATTTC+AGG - chr5.3:43063665-43063684 MS.gene053912:intron 40.0%
! TCAGCTCACAACCTTTTTGT+AGG - chr5.3:43061576-43061595 MS.gene053912:intron 40.0%
! TGCAGCATATCTGAAATGGA+AGG + chr5.3:43064187-43064206 None:intergenic 40.0%
!! AGGTGACTTAGTCTTGAAGA+AGG - chr5.3:43063044-43063063 MS.gene053912:intron 40.0%
!! ATTTAGATGGCGGAATAGGA+TGG - chr5.3:43064927-43064946 MS.gene053912:intron 40.0%
!! CAGGTCGAAACATTGATTCT+TGG - chr5.3:43063684-43063703 MS.gene053912:intron 40.0%
!! CGAAACATTGATTCTTGGTG+AGG - chr5.3:43063689-43063708 MS.gene053912:intron 40.0%
!! GTGAGATTTCAGTTGGTCTT+TGG - chr5.3:43062965-43062984 MS.gene053912:CDS 40.0%
!! TTGGATTTAGATGGCGGAAT+AGG - chr5.3:43064923-43064942 MS.gene053912:intron 40.0%
!! TTTAGATGGCGGAATAGGAT+GGG - chr5.3:43064928-43064947 MS.gene053912:intron 40.0%
!!! AAATTTTTGGCACCATCACC+GGG + chr5.3:43063664-43063683 None:intergenic 40.0%
!!! ACTTTTTGGTTCTCACTGGA+AGG - chr5.3:43063020-43063039 MS.gene053912:intron 40.0%
!!! CTTTTTGTAGGTGTTGGTGT+TGG - chr5.3:43061588-43061607 MS.gene053912:intron 40.0%
!!! GAAATTTTTGGCACCATCAC+CGG + chr5.3:43063665-43063684 None:intergenic 40.0%
!!! GGATTTTTTGTTGGGGTTGT+AGG + chr5.3:43061439-43061458 None:intergenic 40.0%
!!! GTTTTTTCGAGCAACACAAC+AGG - chr5.3:43065078-43065097 MS.gene053912:intron 40.0%
!!! TTGTTTTAGGGAAGAAGCTG+GGG - chr5.3:43062562-43062581 MS.gene053912:intron 40.0%
AAAAAACCAGGAGCAACACC+AGG + chr5.3:43061744-43061763 None:intergenic 45.0%
AGCACTCTTCCTAAGTCTAG+TGG - chr5.3:43061654-43061673 MS.gene053912:intron 45.0%
ATGAAGTCAGGATACGAGCT+GGG - chr5.3:43062692-43062711 MS.gene053912:intron 45.0%
ATGAATCTTGCACTGCATGG+TGG + chr5.3:43061516-43061535 None:intergenic 45.0%
ATTATGGAGAAGCTGCCAAG+TGG - chr5.3:43065101-43065120 MS.gene053912:intron 45.0%
ATTCACTGAAGCTCAACTCC+AGG - chr5.3:43065168-43065187 MS.gene053912:intron 45.0%
CAAACTTCGATCAGTGGAGT+AGG + chr5.3:43064067-43064086 None:intergenic 45.0%
CCAAAAGCAAGAACAACACC+AGG + chr5.3:43061696-43061715 None:intergenic 45.0%
CGAGCAACACAACAGGATTA+TGG - chr5.3:43065085-43065104 MS.gene053912:intron 45.0%
CGTTTCAACCAATGGACACA+TGG + chr5.3:43062306-43062325 None:intergenic 45.0%
CTAACTTGAGCCGACAAAAC+AGG - chr5.3:43062360-43062379 MS.gene053912:CDS 45.0%
CTATTATCAGAGCGTAAGCC+AGG + chr5.3:43064794-43064813 None:intergenic 45.0%
CTGGTGCAGCATATCTGAAA+TGG + chr5.3:43064191-43064210 None:intergenic 45.0%
GAAAGTGACGGTTACCAAAC+GGG - chr5.3:43062170-43062189 MS.gene053912:CDS 45.0%
GAGCTGTTGGATTTAGATGG+CGG - chr5.3:43064917-43064936 MS.gene053912:intron 45.0%
GGAAATTGTGCCCAAGAAGA+AGG - chr5.3:43065631-43065650 MS.gene053912:CDS 45.0%
GGTTGCATGGAGAAAAACTG+TGG - chr5.3:43064859-43064878 MS.gene053912:intron 45.0%
GTGATGAATCTTGCACTGCA+TGG + chr5.3:43061519-43061538 None:intergenic 45.0%
GTGCTCATAATGTACTGCTC+TGG + chr5.3:43064210-43064229 None:intergenic 45.0%
TCCATAACCCATGTGTCCAT+TGG - chr5.3:43062295-43062314 MS.gene053912:CDS 45.0%
TCTTATCTTTGGGCTACACC+TGG - chr5.3:43061723-43061742 MS.gene053912:intron 45.0%
TGGACTTCCATGCACTGTTA+TGG - chr5.3:43061608-43061627 MS.gene053912:intron 45.0%
TGGATGAGCTCAGCAAAAAC+AGG - chr5.3:43065729-43065748 MS.gene053912:CDS 45.0%
TTAGACGGTCTTCACTCAAC+TGG - chr5.3:43063786-43063805 MS.gene053912:intron 45.0%
! AAAGCATTTGGTGGAGGAGA+TGG - chr5.3:43065753-43065772 MS.gene053912:CDS 45.0%
! AAGCCATTCATGGTGCTGAA+TGG - chr5.3:43061544-43061563 MS.gene053912:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - chr5.3:43062852-43062871 MS.gene053912:intron 45.0%
! ACCAATGGACACATGGGTTA+TGG + chr5.3:43062299-43062318 None:intergenic 45.0%
! AGCACCATGAATGGCTTTTG+TGG + chr5.3:43061541-43061560 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - chr5.3:43062851-43062870 MS.gene053912:intron 45.0%
! CAGTCTTGTATTTGTCGACG+AGG + chr5.3:43064564-43064583 None:intergenic 45.0%
! TACCTTTGAAGAGGGCTTCT+TGG + chr5.3:43062625-43062644 None:intergenic 45.0%
! TGTGTCCATTGGTTGAAACG+AGG - chr5.3:43062306-43062325 MS.gene053912:CDS 45.0%
! TTTTGTTGGGGTTGTAGGGA+TGG + chr5.3:43061434-43061453 None:intergenic 45.0%
!! ACAGGAAAAGCATTTGGTGG+AGG - chr5.3:43065747-43065766 MS.gene053912:CDS 45.0%
!! GTGACTATGACTTGGTTGCA+TGG - chr5.3:43064846-43064865 MS.gene053912:intron 45.0%
!! TTTGGTTCTCACTGGAAGGA+AGG - chr5.3:43063024-43063043 MS.gene053912:intron 45.0%
!!! AATTTTTGGCACCATCACCG+GGG + chr5.3:43063663-43063682 None:intergenic 45.0%
!!! CCTGGTGTTGTTCTTGCTTT+TGG - chr5.3:43061693-43061712 MS.gene053912:intron 45.0%
!!! CTGTTTTGTCGGCTCAAGTT+AGG + chr5.3:43062362-43062381 None:intergenic 45.0%
!!! TGTTTTAGGGAAGAAGCTGG+GGG - chr5.3:43062563-43062582 MS.gene053912:intron 45.0%
!!! AAATTTTGTTATAAAATTTA+AGG + chr5.3:43063448-43063467 None:intergenic 5.0%
AAAACTGTGGAGCCTCGATG+TGG - chr5.3:43064872-43064891 MS.gene053912:intron 50.0%
AATCTTGCACTGCATGGTGG+TGG + chr5.3:43061513-43061532 None:intergenic 50.0%
AGCCAAGAAGCCCTCTTCAA+AGG - chr5.3:43062620-43062639 MS.gene053912:intron 50.0%
ATGGCCACTGTTGCAACCAA+AGG - chr5.3:43061390-43061409 MS.gene053912:CDS 50.0%
ATTGTGCCCAAGAAGAAGGC+TGG - chr5.3:43065635-43065654 MS.gene053912:CDS 50.0%
CAGAGCCTCGTTTCAACCAA+TGG + chr5.3:43062314-43062333 None:intergenic 50.0%
CCACACTCCATAACAGTGCA+TGG + chr5.3:43061618-43061637 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG + chr5.3:43062853-43062872 None:intergenic 50.0%
CCATGCACTGTTATGGAGTG+TGG - chr5.3:43061615-43061634 MS.gene053912:intron 50.0%
CTGCACTCTCTCCAGTCTTA+TGG - chr5.3:43064265-43064284 MS.gene053912:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG - chr5.3:43062856-43062875 MS.gene053912:intron 50.0%
GATGAAGTCAGGATACGAGC+TGG - chr5.3:43062691-43062710 MS.gene053912:intron 50.0%
GGATGCGTACTCTAAGTTCC+TGG + chr5.3:43065189-43065208 None:intergenic 50.0%
GGCTTGAATGTTACTGTCCC+TGG - chr5.3:43061675-43061694 MS.gene053912:intron 50.0%
TCAGGAACAGAAAAGGAGGG+TGG - chr5.3:43065145-43065164 MS.gene053912:intron 50.0%
TGAAGTCAGGATACGAGCTG+GGG - chr5.3:43062693-43062712 MS.gene053912:intron 50.0%
TGGATCCCAAGAGAGGAATG+AGG - chr5.3:43065773-43065792 MS.gene053912:CDS 50.0%
TGTGCACCAGCCTTCTTCTT+GGG + chr5.3:43065644-43065663 None:intergenic 50.0%
TTAGCTGGACACTCGACAGA+TGG - chr5.3:43065228-43065247 MS.gene053912:intron 50.0%
TTGTGCACCAGCCTTCTTCT+TGG + chr5.3:43065645-43065664 None:intergenic 50.0%
! ACTCTCTCCAGTCTTATGGC+AGG - chr5.3:43064269-43064288 MS.gene053912:intron 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - chr5.3:43062850-43062869 MS.gene053912:intron 50.0%
!! TAGGAGAGGCTTTGAGCTGT+TGG - chr5.3:43064904-43064923 MS.gene053912:intron 50.0%
AAGCTGGGGGAGGGATCATT+TGG - chr5.3:43062576-43062595 MS.gene053912:intron 55.0%
AAGGTCACGGGTTCAAGTCC+TGG + chr5.3:43065338-43065357 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG + chr5.3:43062865-43062884 None:intergenic 55.0%
CGACCCCACTTAGTGGGATA+AGG + chr5.3:43062858-43062877 None:intergenic 55.0%
CTAAGTTCAGCGCCACATCG+AGG + chr5.3:43064887-43064906 None:intergenic 55.0%
GAAGTCAGGATACGAGCTGG+GGG - chr5.3:43062694-43062713 MS.gene053912:intron 55.0%
GAGGAGATGGATCCCAAGAG+AGG - chr5.3:43065766-43065785 MS.gene053912:CDS 55.0%
GCAGTTGCAACTGGAGCTGA+GGG + chr5.3:43064249-43064268 None:intergenic 55.0%
GCTGCTACAGACTTGCGAGT+TGG - chr5.3:43063981-43064000 MS.gene053912:intron 55.0%
TGCAGTTGCAACTGGAGCTG+AGG + chr5.3:43064250-43064269 None:intergenic 55.0%
TGTACGAGACCCTGAGACCA+TGG + chr5.3:43063940-43063959 None:intergenic 55.0%
TGTAGCCGACCCCACTTAGT+GGG + chr5.3:43062864-43062883 None:intergenic 55.0%
TTAGGGAAGAAGCTGGGGGA+GGG - chr5.3:43062567-43062586 MS.gene053912:intron 55.0%
TTTAGGGAAGAAGCTGGGGG+AGG - chr5.3:43062566-43062585 MS.gene053912:intron 55.0%
! CTCGATGTGGCGCTGAACTT+AGG - chr5.3:43064885-43064904 MS.gene053912:intron 55.0%
! GGAGAGAGTGCAGTTGCAAC+TGG + chr5.3:43064258-43064277 None:intergenic 55.0%
! TGTGGCGCTGAACTTAGGAG+AGG - chr5.3:43064890-43064909 MS.gene053912:intron 55.0%
AAGGTCGCCAGTATCAGCCC+CGG - chr5.3:43063643-43063662 MS.gene053912:intron 60.0%
ACCATCACCGGGGCTGATAC+TGG + chr5.3:43063653-43063672 None:intergenic 60.0%
! ACTGGAGCTGAGGGTGCAGA+TGG + chr5.3:43064240-43064259 None:intergenic 60.0%
!! CTTGCACTGCATGGTGGTGG+TGG + chr5.3:43061510-43061529 None:intergenic 60.0%
!! GCTACACCTGGTGTTGCTCC+TGG - chr5.3:43061735-43061754 MS.gene053912:intron 60.0%
GCCAGTATCAGCCCCGGTGA+TGG - chr5.3:43063649-43063668 MS.gene053912:intron 65.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 43061390 43065793 43061390 ID=MS.gene053912
chr5.3 mRNA 43061390 43065793 43061390 ID=MS.gene053912.t1;Parent=MS.gene053912
chr5.3 exon 43065365 43065793 43065365 ID=MS.gene053912.t1.exon1;Parent=MS.gene053912.t1
chr5.3 CDS 43065365 43065793 43065365 ID=cds.MS.gene053912.t1;Parent=MS.gene053912.t1
chr5.3 exon 43064542 43064628 43064542 ID=MS.gene053912.t1.exon2;Parent=MS.gene053912.t1
chr5.3 CDS 43064542 43064628 43064542 ID=cds.MS.gene053912.t1;Parent=MS.gene053912.t1
chr5.3 exon 43064022 43064141 43064022 ID=MS.gene053912.t1.exon3;Parent=MS.gene053912.t1
chr5.3 CDS 43064022 43064141 43064022 ID=cds.MS.gene053912.t1;Parent=MS.gene053912.t1
chr5.3 exon 43063800 43063898 43063800 ID=MS.gene053912.t1.exon4;Parent=MS.gene053912.t1
chr5.3 CDS 43063800 43063898 43063800 ID=cds.MS.gene053912.t1;Parent=MS.gene053912.t1
chr5.3 exon 43063328 43063496 43063328 ID=MS.gene053912.t1.exon5;Parent=MS.gene053912.t1
chr5.3 CDS 43063328 43063496 43063328 ID=cds.MS.gene053912.t1;Parent=MS.gene053912.t1
chr5.3 exon 43063141 43063234 43063141 ID=MS.gene053912.t1.exon6;Parent=MS.gene053912.t1
chr5.3 CDS 43063141 43063234 43063141 ID=cds.MS.gene053912.t1;Parent=MS.gene053912.t1
chr5.3 exon 43062893 43062986 43062893 ID=MS.gene053912.t1.exon7;Parent=MS.gene053912.t1
chr5.3 CDS 43062893 43062986 43062893 ID=cds.MS.gene053912.t1;Parent=MS.gene053912.t1
chr5.3 exon 43062734 43062790 43062734 ID=MS.gene053912.t1.exon8;Parent=MS.gene053912.t1
chr5.3 CDS 43062734 43062790 43062734 ID=cds.MS.gene053912.t1;Parent=MS.gene053912.t1
chr5.3 exon 43061985 43062398 43061985 ID=MS.gene053912.t1.exon9;Parent=MS.gene053912.t1
chr5.3 CDS 43061985 43062398 43061985 ID=cds.MS.gene053912.t1;Parent=MS.gene053912.t1
chr5.3 exon 43061390 43061551 43061390 ID=MS.gene053912.t1.exon10;Parent=MS.gene053912.t1
chr5.3 CDS 43061390 43061551 43061390 ID=cds.MS.gene053912.t1;Parent=MS.gene053912.t1
Gene Sequence

>MS.gene053912

ATGGCCACTGTTGCAACCAAAGGAATTGGAGTCACAAAGCTCCATCCCTACAACCCCAACAAAAAATCCATTTTCCTTGGCCAAAGACTTAGAATCAAACCCTCAAACAATGAACAACCACCACCACCATGCAGTGCAAGATTCATCACCACAAAAGCCATTCATGGTGCTGAATGGATTCTTGAATCAGCTCACAACCTTTTTGTAGGTGTTGGTGTTGGACTTCCATGCACTGTTATGGAGTGTGGAGATATGATCTATAGAAGCACTCTTCCTAAGTCTAGTGGCTTGAATGTTACTGTCCCTGGTGTTGTTCTTGCTTTTGGTGCTTTGTCTTATCTTTGGGCTACACCTGGTGTTGCTCCTGGTTTTTTTGATATGTTTGTTCTTGCTTTTGTTGAAAGGTTGTTTAGACCTACTTTCAGAAAGGTTTGTTATTTTTCCTTTATTTTTATTTTAGACTACAACTTCAATTTATTACCTAATCTGTTACACTCCTAATAAATTAAGTGTTTGATGAGCTATAGAAATATAATAATACTCTGTTTGCTAAAAAATAGTGAATATGTTATAAGCTAGCTAATAGCGGTTAAGCTAGCTGATTGAATTTATAGTGTTTCGTAAAATAGTGGTTGAACTAGCTATTCAATTCATATTTAGTTTTTTTTCTATCAAGGCTACAAAGGTAAAATTGAGATAAAAAATGTTAAGTTATAAGCTGCTTGAATTAGCTTATCAGAAACCTCTGTAAGTTAGTAAAAATAAGCTATAAGCTCATGAGAAAGTGACGGTTACCAAACGGGTCTTTTTTAGTCAAATGAGCTTATAAGACAAAAGCTATAAGCTATAAGCTCAAATTTGTGGCTTGCCAAATAGATCCTAAATAGACGCTAAATTATTTTCGATCCATAACCCATGTGTCCATTGGTTGAAACGAGGCTCTGATACTATATTAAAATTTGGATTGAGCCTAACTTGAGCCGACAAAACAGGCTTGATAAACTGAGAATAGAATAGAGATAATTTATGGACCAAATAGGAGAGAGTGAAAATTTAGTGACGAAATTGAAGGTTTGCTATTTATTTAATTTTATTGCATTTTTATGAAATAGTATTTCAGGAGTCTGTTCTATTTGTTATTGCTGAGAACGGTTTATTATGGCAGGATGATTTTGTTTTAGGGAAGAAGCTGGGGGAGGGATCATTTGGAGTTGTTTATAGAGTGACACTAGCCAAGAAGCCCTCTTCAAAGGTATTATTATTGTTATGGATATGGATTCTTTGCGATCGTTCTTAGATATGATGAAGTCAGGATACGAGCTGGGGGAACGTAATCCGAGTCTTGTTATTATATTATGATATATATTCTATTTATTGGTTGCTAAATTATTAAATGTTTTTGGACTTACAATAAACTACTTGCAGTTTTTCATGAATAAGAACCGACCAACAACTAACAACCAAGCCTTATCCCACTAAGTGGGGTCGGCTACATGAATCAAATTATTTATAGATTCTCTTAAGGATTTTTAGAAAATAAAATGAAGAACCAACTTGTTGGTATATCATGTGTTTGTGAGATTTCAGTTGGTCTTTGGGTCGCTTGAATTGTTTAGTTATGACTTATGATACTTTTTGGTTCTCACTGGAAGGAAGGTGACTTAGTCTTGAAGAAGGCGACTGAATATGGTGCTGTAGAAATTTGGATGAATGAACGAGTACGAAGAGCTTGTGCAAACAGCTGTGCAGATTTTGTTTATGGTTTTCTTGAGGTAAGGATTTTTGGGGTATCACTGTCTTACTTGTTTGGAGAAATCGAAGGCGTTCTCAGTCTCATCATTTATCATTTTAGTTTGCTTGCTTCAAAGACTGATATTGTCATTTACTATTTGCAGAGGTCTACAAAGAAGACTCCTGAATATTGGCTTATATGGAGGTTTGAAGGGGATGCTACCTTAGCTGATCTATTGCAGAGTAGAGATTTTCCATATAATGTTGGTAGTCTCTTTAATTAAGATCATAGTACTCGATAAATTAAAAATGTCAGTATTTTAGCCTTAAATTTTATAACAAAATTTATATATCAGTGAATCAATTATCAGTCTTTCATCTGTGAGGATATGTTTCGTATGCTTTAATTACCCTTCACTATGTTTCTGAAACACTTATTTCAAGCATAAATTCTACTGAAACTTTTCTGTCCGAGAAAGTTCTATTTAAATTTTATGCTTCCTTGGTTATTTATGATCTCTAAAGGTCGCCAGTATCAGCCCCGGTGATGGTGCCAAAAATTTCAGGTCGAAACATTGATTCTTGGTGAGGTACAAGATTTGCCAAAGGGATTGGAAAGAGAAAATAAAATTATTCAAACAATCATAAGACAACTTTTGTTCGCATTAGACGGTCTTCACTCAACTGGTATTGTGCATAGGGATATTAAGCCGCAGAACATTATTTTCTCTGAAGGTAAAAGAGTCTAAAGATTGCATAACATTTTCAAATTACAAAAGATTCTCAAACCAAGTTATGCTTTAATTTCTATATTAACCATGGTCTCAGGGTCTCGTACATTCAAAATAATTGATCTTGGAGCTGCTACAGACTTGCGAGTTGGCATTAACTACATTCCTAAAGAGTTTCTTTTGGATCCAAGGTAGCTTCAGATGACTTTAAACCTACTCCACTGATCGAAGTTTGTGTTTAATGATTAGTTGATTAATAGATACATTATTAGGATCCTTGATGACTCAAGTTAGGAAGTATGCTCTGTGTTTATCCTCATGTTGTGTACAATCCTTCCATTTCAGATATGCTGCACCAGAGCAGTACATTATGAGCACACAAACTCCATCTGCACCCTCAGCTCCAGTTGCAACTGCACTCTCTCCAGTCTTATGGCAGGTTAAACTTTTCTTACGAACCATCCATCATTAATAATAGCACATGTAACTTTCATTTACATCTAATGATGTTGTTCTATGTTTGTCTTCTTGTTTCAAACAGTTGAATCTTCCTGACAGATTTGATATCTACAGTACTGGTCTAATATTCCTCCAAATGGTGAGTATCAAATAATGAGAAAACTGATTATTATCTTTTGTCGCTGTTATATGAATTCATTAGTCAATTTCTGTAATAAATTATATAAGATGTAAATTAGTAGTATAACTACCTCGTCGACAAATACAAGACTGCACTTTCGTATTTTTGTAGTTAAAATGATTATGGTATGATTTTGATTGTTTTGATCTATCACGAATTTTTTTTTTTTTATACAATAGTTTCATATATTTCTAATCATGGAAATCATTTAAACAATGGCAAGGAGTGCTCTAGCCAATTATATGATCAAACTGGTATTCTTTATTGCTCACAATTTTGATCATTTTATATAGGCATTTCCTGGCTTACGCTCTGATAATAGCCTTATACAATTCAACCGTCAATTAAAGAGGTGTGACTATGACTTGGTTGCATGGAGAAAAACTGTGGAGCCTCGATGTGGCGCTGAACTTAGGAGAGGCTTTGAGCTGTTGGATTTAGATGGCGGAATAGGATGGGAACTTTTGACGTCAATGGTCCGATATAAAGCAAGGCAAAGGCTGAGTGCTAAAGCAGCGTTAGCTCATCCTTACTTTGACAAAGAAGGCTTGTTGGCATTATCTATCATGCAAAATCTGAGGCTTAAGTTTTTTCGAGCAACACAACAGGATTATGGAGAAGCTGCCAAGTGGATTATTCAGCTTATGGCAAAATCAGGAACAGAAAAGGAGGGTGGATTCACTGAAGCTCAACTCCAGGAACTTAGAGTACGCATCCTAATACTGAAAATTTTTTTTTAGCTGGACACTCGACAGATGGCCACATGTCATTTCTTTAGATACATAGGCTGTTGAGAGATGTCACGTAACAGCCTTACCCTGTTTTTTACACAAGAGACTGTTTCCAGGACTTGAACCCGTGACCTTTCAGTCACTTAACAACTTAACCGTTGCACCAAGGCTCCCTATTTTTGGAGGGATGAAAATCTAAATAATTTTTTTAGAGACCAAAATCAAATTTTGTTTATTTTACTGGACCATAAACATATTTATAACCCTTTTATTGTCATAGTCATCATCTTCTTAGGGGCAAAAATCAAAATCTGCTTATATGACTGAATCATAAACATATTCAACCCTTTTTTTCCTTCATAGTTGACACCTTTTATTGATCATTTTTTTTTTTTTTTTTGCGTTGTAGGAAATTGTGCCCAAGAAGAAGGCTGGTGCACAAAGAAATGCTCTAGCTTCAGCTCTTAAAGTGCAAAGGAAAATTATAAAAACCTTAAATGAGAGTATGGATGAGCTCAGCAAAAACAGGAAAAGCATTTGGTGGAGGAGATGGATCCCAAGAGAGGAATGA

Protein sequence

>MS.gene053912.t1

MATVATKGIGVTKLHPYNPNKKSIFLGQRLRIKPSNNEQPPPPCSARFITTKAIHGAEWILESAHNLFVGVGVGLPCTVMECGDMIYRSTLPKSSGLNVTVPGVVLAFGALSYLWATPGVAPGFFDMFVLAFVERLFRPTFRKDDFVLGKKLGEGSFGVVYRVTLAKKPSSKEGDLVLKKATEYGAVEIWMNERVRRACANSCADFVYGFLERSTKKTPEYWLIWRFEGDATLADLLQSRDFPYNVETLILGEVQDLPKGLERENKIIQTIIRQLLFALDGLHSTGIVHRDIKPQNIIFSEGSRTFKIIDLGAATDLRVGINYIPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPDRFDIYSTGLIFLQMAFPGLRSDNSLIQFNRQLKRCDYDLVAWRKTVEPRCGAELRRGFELLDLDGGIGWELLTSMVRYKARQRLSAKAALAHPYFDKEGLLALSIMQNLRLKFFRATQQDYGEAAKWIIQLMAKSGTEKEGGFTEAQLQELREIVPKKKAGAQRNALASALKVQRKIIKTLNESMDELSKNRKSIWWRRWIPREE