AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene46429

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene46429.t1 MTR_1g055435 96.296 135 5 0 21 155 22 156 8.54e-96 273
MS.gene46429.t1 MTR_1g055425 80.000 155 31 0 1 155 1 155 3.81e-83 241
MS.gene46429.t1 MTR_4g050400 60.000 90 36 0 31 120 30 119 1.09e-31 111
MS.gene46429.t1 MTR_5g085900 37.956 137 83 1 21 155 26 162 2.59e-30 107
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene46429.t1 AT3G11780 63.194 144 53 0 12 155 10 153 2.89e-69 206
MS.gene46429.t1 AT3G11780 56.173 162 53 1 12 155 10 171 8.28e-65 196
MS.gene46429.t1 AT5G06480 66.923 130 43 0 26 155 24 153 5.49e-64 193
MS.gene46429.t1 AT3G44100 48.175 137 69 2 16 152 15 149 1.57e-39 131

Find 31 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAAATCACCAACCGAAAT+AGG 0.176755 1.2:+44293052 None:intergenic
GGCTATGATGTTCAAGTTAA+AGG 0.294771 1.2:-44293661 MS.gene46429:CDS
TGAAAAGAATAAGAAGAGTT+TGG 0.337784 1.2:+44294710 None:intergenic
GTGGTTGATGTGTCGTATTT+TGG 0.341756 1.2:-44293124 MS.gene46429:CDS
AGAATCATCTTGCCCTATTT+CGG 0.351220 1.2:-44293065 MS.gene46429:CDS
TGGCCTCTTGCAACGGGCTC+AGG 0.355000 1.2:+44293625 None:intergenic
ATTACTTGTAGTTGCAGAAA+TGG 0.376462 1.2:+44293588 None:intergenic
CAAAATCACCAACCGAAATA+GGG 0.409253 1.2:+44293053 None:intergenic
GCAGGCTGGCCTCTTGCAAC+GGG 0.412012 1.2:+44293619 None:intergenic
GAGTTGACTTGCATTACATT+TGG 0.422988 1.2:-44291485 MS.gene46429:CDS
AGCAGGCTGGCCTCTTGCAA+CGG 0.452618 1.2:+44293618 None:intergenic
AGTGAGACCCATGACCTTTG+TGG 0.480719 1.2:-44293088 MS.gene46429:CDS
ATGATTCTCCACAAAGGTCA+TGG 0.491107 1.2:+44293080 None:intergenic
TTGAAGATGAAGCTGTATGA+TGG 0.520552 1.2:-44291518 MS.gene46429:CDS
TCATCTTGCCCTATTTCGGT+TGG 0.527245 1.2:-44293061 MS.gene46429:CDS
CATGTCACAGGTAAGAAAGA+TGG 0.543834 1.2:-44293682 MS.gene46429:intron
GCAGAAATGGTGAATGTAGC+AGG 0.564150 1.2:+44293601 None:intergenic
CTTACAGGTGGGGTGTATGC+AGG 0.566295 1.2:+44293007 None:intergenic
GCCACCGATGTTCACTATTG+CGG 0.568515 1.2:-44294657 MS.gene46429:intron
TCTCCTGAGCCCGTTGCAAG+AGG 0.575410 1.2:-44293628 MS.gene46429:CDS
TGATTCTCCACAAAGGTCAT+GGG 0.579839 1.2:+44293081 None:intergenic
TCAGGTCAAGCATTATCAGA+AGG 0.588195 1.2:-44293154 MS.gene46429:intron
AAATGGTGAATGTAGCAGGC+TGG 0.595213 1.2:+44293605 None:intergenic
CAGGTCAAGCATTATCAGAA+GGG 0.612990 1.2:-44293153 MS.gene46429:CDS
ATAGTGAACATCGGTGGCGT+CGG 0.635936 1.2:+44294662 None:intergenic
ATTATCAGAAGGGAAACTAG+TGG 0.674625 1.2:-44293143 MS.gene46429:CDS
GGCAAGATGATTCTCCACAA+AGG 0.677071 1.2:+44293074 None:intergenic
CAATTAGATATCAGCCACAG+AGG 0.690807 1.2:+44291442 None:intergenic
ACCGCAATAGTGAACATCGG+TGG 0.695945 1.2:+44294656 None:intergenic
ATAGCAACGACTTACAGGTG+GGG 0.696202 1.2:+44292997 None:intergenic
AAAACCGCAATAGTGAACAT+CGG 0.700134 1.2:+44294653 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATTCAAATATTAATTAC+CGG - chr1.2:44291829-44291848 MS.gene46429:intron 10.0%
!! TAAATTAAATTATATCTGTT+TGG + chr1.2:44292408-44292427 None:intergenic 10.0%
!!! AAAAAAATATACACAAATTT+TGG - chr1.2:44291961-44291980 MS.gene46429:intron 10.0%
!!! AATGTTTATTTGTTTTTATT+TGG - chr1.2:44291710-44291729 MS.gene46429:intron 10.0%
!!! ATCTAATTTTAAAAAACAAA+AGG + chr1.2:44292656-44292675 None:intergenic 10.0%
!! AAAAAATAATGAGAAAGAAA+AGG + chr1.2:44291552-44291571 None:intergenic 15.0%
!! AAACTTATACTATTAATTGA+AGG + chr1.2:44292160-44292179 None:intergenic 15.0%
!! AACTTATACTATTAATTGAA+GGG + chr1.2:44292159-44292178 None:intergenic 15.0%
!! ATATGAATAATTCAAAATAC+AGG - chr1.2:44292055-44292074 MS.gene46429:intron 15.0%
!! ATTATATCAATATTATGTAG+CGG + chr1.2:44292822-44292841 None:intergenic 15.0%
!! TAAAGATTCAAAATACATTA+AGG - chr1.2:44293650-44293669 MS.gene46429:CDS 15.0%
!! TATTTGAATAATTGCAATTA+CGG + chr1.2:44291821-44291840 None:intergenic 15.0%
!!! AATTATTGATTAATTCAACT+CGG + chr1.2:44291747-44291766 None:intergenic 15.0%
!!! ATTTGCTTATGAAATTTTTT+GGG - chr1.2:44291785-44291804 MS.gene46429:intron 15.0%
!!! TATTTGCTTATGAAATTTTT+TGG - chr1.2:44291784-44291803 MS.gene46429:intron 15.0%
!! AAAAAGGTAAAATATAGTAC+AGG + chr1.2:44292727-44292746 None:intergenic 20.0%
!! ATGCATATAGTATAAATTAG+AGG + chr1.2:44294326-44294345 None:intergenic 20.0%
!! CAAATAAACATTGAATATTC+AGG + chr1.2:44291702-44291721 None:intergenic 20.0%
!! CATAAAAGATAATTAGGTAA+TGG + chr1.2:44292470-44292489 None:intergenic 20.0%
!! GACATACATAAAAGATAATT+AGG + chr1.2:44292476-44292495 None:intergenic 20.0%
!! GCAAATAATTAATCTTAGTT+TGG - chr1.2:44291864-44291883 MS.gene46429:intron 20.0%
!! TATAAATTAGAGGATACAAT+TGG + chr1.2:44294316-44294335 None:intergenic 20.0%
!! TATTATTCTATGATAGAATG+TGG + chr1.2:44292857-44292876 None:intergenic 20.0%
!!! TATATCTATTTTCATGCATT+TGG - chr1.2:44292679-44292698 MS.gene46429:intron 20.0%
!!! TATTTGCTTATGAAATTTTC+CGG + chr1.2:44291851-44291870 None:intergenic 20.0%
!!! TGGTTATTTCACATAAATTA+AGG + chr1.2:44294461-44294480 None:intergenic 20.0%
!!! TTAAAAGTTGAATTAGGTTT+TGG - chr1.2:44294160-44294179 MS.gene46429:intron 20.0%
!!! TTACCCTATTAAATTCTTTT+GGG - chr1.2:44291997-44292016 MS.gene46429:intron 20.0%
!!! TTTACCCTATTAAATTCTTT+TGG - chr1.2:44291996-44292015 MS.gene46429:intron 20.0%
! AAAATGGAAGATATTGAGTT+GGG + chr1.2:44294353-44294372 None:intergenic 25.0%
! AAATCAACCTTATCAAGTAT+TGG + chr1.2:44294400-44294419 None:intergenic 25.0%
! AATAATTCAAAATACAGGTG+TGG - chr1.2:44292060-44292079 MS.gene46429:intron 25.0%
! AATGACATAACACAAAGTAT+TGG + chr1.2:44293308-44293327 None:intergenic 25.0%
! AATTTGTCAATATAGCATTG+AGG + chr1.2:44294064-44294083 None:intergenic 25.0%
! ACTTATGTATCTGTGAATAA+AGG + chr1.2:44293928-44293947 None:intergenic 25.0%
! AGACTAGCATTAAACAAAAA+AGG + chr1.2:44294577-44294596 None:intergenic 25.0%
! ATCATTTCTACATTGGAAAA+AGG + chr1.2:44293955-44293974 None:intergenic 25.0%
! ATTATGTGTAGAAATAGATG+AGG - chr1.2:44292947-44292966 MS.gene46429:intron 25.0%
! ATTCAAAGAGAAGATACAAA+GGG - chr1.2:44293694-44293713 MS.gene46429:intron 25.0%
! CTAGTACAAATTTGCATTAT+TGG - chr1.2:44293277-44293296 MS.gene46429:intron 25.0%
! CTTATGTATCTGTGAATAAA+GGG + chr1.2:44293927-44293946 None:intergenic 25.0%
! TAAAATAACCCCTGTAATTT+GGG + chr1.2:44292128-44292147 None:intergenic 25.0%
! TAAACATTAATTACCATGCT+CGG + chr1.2:44292761-44292780 None:intergenic 25.0%
! TGAAAAGAATAAGAAGAGTT+TGG + chr1.2:44291470-44291489 None:intergenic 25.0%
! TTATGTATCTGTGAATAAAG+GGG + chr1.2:44293926-44293945 None:intergenic 25.0%
!! AATACTTGATAAGGTTGATT+TGG - chr1.2:44294399-44294418 MS.gene46429:intron 25.0%
!! ATTTGTCAATATAGCATTGA+GGG + chr1.2:44294063-44294082 None:intergenic 25.0%
!! CCAAAAATAGCTTTTGTAAA+GGG - chr1.2:44292027-44292046 MS.gene46429:intron 25.0%
!! CTTGTTAATAGTTGTTATTC+TGG + chr1.2:44293839-44293858 None:intergenic 25.0%
!! TACCCTATTAAATTCTTTTG+GGG - chr1.2:44291998-44292017 MS.gene46429:intron 25.0%
!! TCCAAAAATAGCTTTTGTAA+AGG - chr1.2:44292026-44292045 MS.gene46429:intron 25.0%
!! TTATGTCATTTAGATATCCT+AGG - chr1.2:44293318-44293337 MS.gene46429:intron 25.0%
!! TTTTACAATGATTTGAGCAT+TGG - chr1.2:44293448-44293467 MS.gene46429:intron 25.0%
!!! AACTGTGTATTTTATTTCAC+AGG - chr1.2:44292084-44292103 MS.gene46429:intron 25.0%
!!! ATTACATTTGGTTTTGATGT+TGG - chr1.2:44294704-44294723 MS.gene46429:CDS 25.0%
!!! TTACATTTGGTTTTGATGTT+GGG - chr1.2:44294705-44294724 MS.gene46429:CDS 25.0%
AGCGGTTTAAAAGTTGAATT+AGG - chr1.2:44294154-44294173 MS.gene46429:intron 30.0%
ATATGACAAACATGTACACA+AGG - chr1.2:44293726-44293745 MS.gene46429:intron 30.0%
ATTACTTGTAGTTGCAGAAA+TGG + chr1.2:44292592-44292611 None:intergenic 30.0%
CAAAATGGAAGATATTGAGT+TGG + chr1.2:44294354-44294373 None:intergenic 30.0%
CACAAAACTTATGTCAAACT+AGG + chr1.2:44292261-44292280 None:intergenic 30.0%
CATTTAGATATCCTAGGAAA+GGG - chr1.2:44293324-44293343 MS.gene46429:intron 30.0%
CCAATGTCATAAATGCAAAA+TGG + chr1.2:44294369-44294388 None:intergenic 30.0%
CTAAAATAACCCCTGTAATT+TGG + chr1.2:44292129-44292148 None:intergenic 30.0%
CTCCCCAAAAGAATTTAATA+GGG + chr1.2:44292003-44292022 None:intergenic 30.0%
GAATACACCAATACTTGATA+AGG - chr1.2:44294390-44294409 MS.gene46429:intron 30.0%
GAATTGTTCTCTTGGTTATT+AGG + chr1.2:44293621-44293640 None:intergenic 30.0%
GATTCAAAGAGAAGATACAA+AGG - chr1.2:44293693-44293712 MS.gene46429:intron 30.0%
GTGTTAAGTCAATATGGTTA+AGG - chr1.2:44293472-44293491 MS.gene46429:intron 30.0%
GTTAAGGTGAAATTTGTAGT+TGG - chr1.2:44293488-44293507 MS.gene46429:intron 30.0%
TCATCTTCTGTTCAATATTG+CGG - chr1.2:44291603-44291622 MS.gene46429:intron 30.0%
TCATTTAGATATCCTAGGAA+AGG - chr1.2:44293323-44293342 MS.gene46429:intron 30.0%
TCTAGTTAGAATTGTTCTCT+TGG + chr1.2:44293629-44293648 None:intergenic 30.0%
TCTCCCCAAAAGAATTTAAT+AGG + chr1.2:44292004-44292023 None:intergenic 30.0%
TGGAACTATCATTTCTACAT+TGG + chr1.2:44293962-44293981 None:intergenic 30.0%
TTTGACGAACCTAATAAAAC+AGG - chr1.2:44292288-44292307 MS.gene46429:intron 30.0%
! ACACGAACACATTTTATTCA+AGG + chr1.2:44293216-44293235 None:intergenic 30.0%
! ATTGGAGTGTTAAGTCAATA+TGG - chr1.2:44293466-44293485 MS.gene46429:intron 30.0%
! CCATTTTGCATTTATGACAT+TGG - chr1.2:44294366-44294385 MS.gene46429:intron 30.0%
! GACAAGAATTGATAACACAA+AGG + chr1.2:44294202-44294221 None:intergenic 30.0%
! TGATTGGATTAGAGAAAAGA+AGG + chr1.2:44292994-44293013 None:intergenic 30.0%
! TTATTAGGTCTGCTTAGTTT+TGG + chr1.2:44293606-44293625 None:intergenic 30.0%
! TTTGTCAATATAGCATTGAG+GGG + chr1.2:44294062-44294081 None:intergenic 30.0%
! TTTTATGTATGTCATGTCAC+AGG - chr1.2:44292483-44292502 MS.gene46429:intron 30.0%
!! CAAATTACAGGGGTTATTTT+AGG - chr1.2:44292127-44292146 MS.gene46429:intron 30.0%
!! CCCTTTACAAAAGCTATTTT+TGG + chr1.2:44292030-44292049 None:intergenic 30.0%
!! CTGTCATAACCTGTTTTATT+AGG + chr1.2:44292300-44292319 None:intergenic 30.0%
!! TATTAGGTCTGCTTAGTTTT+GGG + chr1.2:44293605-44293624 None:intergenic 30.0%
!! TTTTAAGTGTTTGTTTGCAC+TGG - chr1.2:44294511-44294530 MS.gene46429:intron 30.0%
AAAACCGCAATAGTGAACAT+CGG + chr1.2:44291527-44291546 None:intergenic 35.0%
AACTTATAGCAACGACTTAC+AGG + chr1.2:44293188-44293207 None:intergenic 35.0%
ACAAAATCACCAACCGAAAT+AGG + chr1.2:44293128-44293147 None:intergenic 35.0%
AGAATCATCTTGCCCTATTT+CGG - chr1.2:44293112-44293131 MS.gene46429:CDS 35.0%
ATAGCAGCACTATAACACAA+CGG + chr1.2:44292908-44292927 None:intergenic 35.0%
ATCCAATCATTTCATGACTC+AGG - chr1.2:44293005-44293024 MS.gene46429:intron 35.0%
ATTATCAGAAGGGAAACTAG+TGG - chr1.2:44293034-44293053 MS.gene46429:CDS 35.0%
CAAAATCACCAACCGAAATA+GGG + chr1.2:44293127-44293146 None:intergenic 35.0%
CCTTGAGGGCTATAATTTAA+AGG - chr1.2:44293799-44293818 MS.gene46429:intron 35.0%
CCTTTAAATTATAGCCCTCA+AGG + chr1.2:44293802-44293821 None:intergenic 35.0%
CTAGACCCTAAAATCTCAAA+CGG + chr1.2:44293985-44294004 None:intergenic 35.0%
CTCGGAACAAACACTTAAAA+AGG + chr1.2:44292743-44292762 None:intergenic 35.0%
CTTTCCATATACCAACACAA+AGG + chr1.2:44293578-44293597 None:intergenic 35.0%
GTCACATATACCGTGTAATT+TGG - chr1.2:44291911-44291930 MS.gene46429:intron 35.0%
TAATGTCGTCTTATCTGTCT+TGG - chr1.2:44293367-44293386 MS.gene46429:intron 35.0%
TACCATCTGTTGTAATTGCA+GGG - chr1.2:44294626-44294645 MS.gene46429:intron 35.0%
TTACCATCTGTTGTAATTGC+AGG - chr1.2:44294625-44294644 MS.gene46429:intron 35.0%
TTGAAGATGAAGCTGTATGA+TGG - chr1.2:44294659-44294678 MS.gene46429:CDS 35.0%
! CAACTTTTAAACCGCTTGAA+GGG + chr1.2:44294150-44294169 None:intergenic 35.0%
! GGCTATGATGTTCAAGTTAA+AGG - chr1.2:44292516-44292535 MS.gene46429:intron 35.0%
! GTAACCTTTGTGTTGGTATA+TGG - chr1.2:44293571-44293590 MS.gene46429:intron 35.0%
! TCAACTTTTAAACCGCTTGA+AGG + chr1.2:44294151-44294170 None:intergenic 35.0%
!! AAAGGGGAGTTTGTTAGAAA+TGG + chr1.2:44293910-44293929 None:intergenic 35.0%
!! GAGTTGACTTGCATTACATT+TGG - chr1.2:44294692-44294711 MS.gene46429:CDS 35.0%
!! TATTTCACAGGTGCTATTTC+TGG - chr1.2:44292096-44292115 MS.gene46429:intron 35.0%
!! TTCCACCGTTTGAGATTTTA+GGG - chr1.2:44293977-44293996 MS.gene46429:intron 35.0%
!! TTGATGTGTCGTATTTTGGA+TGG - chr1.2:44293057-44293076 MS.gene46429:CDS 35.0%
!!! GATTTTAGGGTCTAGGTTTT+TGG - chr1.2:44293990-44294009 MS.gene46429:intron 35.0%
!!! TGCTTGTAGTTTTTGGCAAT+AGG - chr1.2:44293237-44293256 MS.gene46429:intron 35.0%
AACCCTGCAATTACAACAGA+TGG + chr1.2:44294631-44294650 None:intergenic 40.0%
ACCAAATGCGACACTCATAA+TGG - chr1.2:44294477-44294496 MS.gene46429:intron 40.0%
ACTGCTAGTAACCTTTGTGT+TGG - chr1.2:44293564-44293583 MS.gene46429:intron 40.0%
ATGATTCTCCACAAAGGTCA+TGG + chr1.2:44293100-44293119 None:intergenic 40.0%
ATTATAGCCCTCAAGGATAG+AGG + chr1.2:44293795-44293814 None:intergenic 40.0%
CAGGTCAAGCATTATCAGAA+GGG - chr1.2:44293024-44293043 MS.gene46429:CDS 40.0%
CATAATGCAACACCGAATAG+CGG + chr1.2:44292933-44292952 None:intergenic 40.0%
CATGTCACAGGTAAGAAAGA+TGG - chr1.2:44292495-44292514 MS.gene46429:intron 40.0%
CTCTAGTGTGAAAGTCTTTG+GGG + chr1.2:44293755-44293774 None:intergenic 40.0%
GACCTGAGTCATGAAATGAT+TGG + chr1.2:44293010-44293029 None:intergenic 40.0%
GATTCATCTTTCCCTTCAAG+CGG - chr1.2:44294136-44294155 MS.gene46429:intron 40.0%
GCTCTAGTGTGAAAGTCTTT+GGG + chr1.2:44293756-44293775 None:intergenic 40.0%
TAGACCTCGTCCAAATTACA+CGG + chr1.2:44291924-44291943 None:intergenic 40.0%
TATACCGTGTAATTTGGACG+AGG - chr1.2:44291917-44291936 MS.gene46429:intron 40.0%
TATAGCAACGACTTACAGGT+GGG + chr1.2:44293184-44293203 None:intergenic 40.0%
TCAGGTCAAGCATTATCAGA+AGG - chr1.2:44293023-44293042 MS.gene46429:CDS 40.0%
TGATTCTCCACAAAGGTCAT+GGG + chr1.2:44293099-44293118 None:intergenic 40.0%
TGCTCTAGTGTGAAAGTCTT+TGG + chr1.2:44293757-44293776 None:intergenic 40.0%
TGTGCAAAAATGTGCTTGCT+AGG - chr1.2:44292235-44292254 MS.gene46429:intron 40.0%
TTAAGTGTTTGTTCCGAGCA+TGG - chr1.2:44292745-44292764 MS.gene46429:intron 40.0%
TTATAGCAACGACTTACAGG+TGG + chr1.2:44293185-44293204 None:intergenic 40.0%
TTATAGCCCTCAAGGATAGA+GGG + chr1.2:44293794-44293813 None:intergenic 40.0%
! GTTGTGTTATAGTGCTGCTA+TGG - chr1.2:44292907-44292926 MS.gene46429:intron 40.0%
! TCCATTATGAGTGTCGCATT+TGG + chr1.2:44294481-44294500 None:intergenic 40.0%
! TCGTGTGTGCTTGTAGTTTT+TGG - chr1.2:44293230-44293249 MS.gene46429:intron 40.0%
!! GTGGTTGATGTGTCGTATTT+TGG - chr1.2:44293053-44293072 MS.gene46429:CDS 40.0%
!! GTTCCACCGTTTGAGATTTT+AGG - chr1.2:44293976-44293995 MS.gene46429:intron 40.0%
!!! CGTTTGAGATTTTAGGGTCT+AGG - chr1.2:44293983-44294002 MS.gene46429:intron 40.0%
!!! TGTTGGGTTTTTTTCCTCTG+TGG - chr1.2:44294721-44294740 MS.gene46429:CDS 40.0%
AAATGGTGAATGTAGCAGGC+TGG + chr1.2:44292575-44292594 None:intergenic 45.0%
ATAGCAACGACTTACAGGTG+GGG + chr1.2:44293183-44293202 None:intergenic 45.0%
ATCTTTCCCCTCTATCCTTG+AGG - chr1.2:44293784-44293803 MS.gene46429:intron 45.0%
GACCCTAAAATCTCAAACGG+TGG + chr1.2:44293982-44294001 None:intergenic 45.0%
GCAGAAATGGTGAATGTAGC+AGG + chr1.2:44292579-44292598 None:intergenic 45.0%
GGCAAGATGATTCTCCACAA+AGG + chr1.2:44293106-44293125 None:intergenic 45.0%
TAACCCCTGTAATTTGGGCA+AGG + chr1.2:44292123-44292142 None:intergenic 45.0%
TATAGCCCTCAAGGATAGAG+GGG + chr1.2:44293793-44293812 None:intergenic 45.0%
TCATCTTGCCCTATTTCGGT+TGG - chr1.2:44293116-44293135 MS.gene46429:CDS 45.0%
TCTTTCCCCTCTATCCTTGA+GGG - chr1.2:44293785-44293804 MS.gene46429:intron 45.0%
TGAACACAGAAGAGCGAACT+AGG + chr1.2:44294087-44294106 None:intergenic 45.0%
TGGACCTTGCCCAAATTACA+GGG - chr1.2:44292116-44292135 MS.gene46429:intron 45.0%
! CGACACTCATAATGGAACAG+GGG - chr1.2:44294485-44294504 MS.gene46429:intron 45.0%
! GCGACACTCATAATGGAACA+GGG - chr1.2:44294484-44294503 MS.gene46429:intron 45.0%
! TGCGACACTCATAATGGAAC+AGG - chr1.2:44294483-44294502 MS.gene46429:intron 45.0%
!!! AGGGTCTAGGTTTTTGGTAC+TGG - chr1.2:44293996-44294015 MS.gene46429:intron 45.0%
!!! GGGTCTAGGTTTTTGGTACT+GGG - chr1.2:44293997-44294016 MS.gene46429:intron 45.0%
ACCGCAATAGTGAACATCGG+TGG + chr1.2:44291524-44291543 None:intergenic 50.0%
AGTGAGACCCATGACCTTTG+TGG - chr1.2:44293089-44293108 MS.gene46429:CDS 50.0%
ATAGTGAACATCGGTGGCGT+CGG + chr1.2:44291518-44291537 None:intergenic 50.0%
CAGATGTCAGTCCCTTTCCT+AGG + chr1.2:44293338-44293357 None:intergenic 50.0%
CTGGACCTTGCCCAAATTAC+AGG - chr1.2:44292115-44292134 MS.gene46429:intron 50.0%
GCCACCGATGTTCACTATTG+CGG - chr1.2:44291520-44291539 MS.gene46429:CDS 50.0%
GGACCTTGCCCAAATTACAG+GGG - chr1.2:44292117-44292136 MS.gene46429:intron 50.0%
CGATGCCTGATCAACGTGGA+GGG - chr1.2:44291888-44291907 MS.gene46429:intron 55.0%
CTTACAGGTGGGGTGTATGC+AGG + chr1.2:44293173-44293192 None:intergenic 55.0%
GATGCCTGATCAACGTGGAG+GGG - chr1.2:44291889-44291908 MS.gene46429:intron 55.0%
TCGATGCCTGATCAACGTGG+AGG - chr1.2:44291887-44291906 MS.gene46429:intron 55.0%
TGGTCGATGCCTGATCAACG+TGG - chr1.2:44291884-44291903 MS.gene46429:intron 55.0%
! GTGCTGCTATGGCCGCTATT+CGG - chr1.2:44292918-44292937 MS.gene46429:intron 55.0%
GTGACCCCTCCACGTTGATC+AGG + chr1.2:44291896-44291915 None:intergenic 60.0%
TCTCCTGAGCCCGTTGCAAG+AGG - chr1.2:44292549-44292568 MS.gene46429:intron 60.0%
!! AGCAGGCTGGCCTCTTGCAA+CGG + chr1.2:44292562-44292581 None:intergenic 60.0%
! TGGCCTCTTGCAACGGGCTC+AGG + chr1.2:44292555-44292574 None:intergenic 65.0%
!! GCAGGCTGGCCTCTTGCAAC+GGG + chr1.2:44292561-44292580 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 44291445 44294754 44291445 ID=MS.gene46429
chr1.2 mRNA 44291445 44294754 44291445 ID=MS.gene46429.t1;Parent=MS.gene46429
chr1.2 exon 44294658 44294754 44294658 ID=MS.gene46429.t1.exon1;Parent=MS.gene46429.t1
chr1.2 CDS 44294658 44294754 44294658 ID=cds.MS.gene46429.t1;Parent=MS.gene46429.t1
chr1.2 exon 44293593 44293694 44293593 ID=MS.gene46429.t1.exon2;Parent=MS.gene46429.t1
chr1.2 CDS 44293593 44293694 44293593 ID=cds.MS.gene46429.t1;Parent=MS.gene46429.t1
chr1.2 exon 44293012 44293172 44293012 ID=MS.gene46429.t1.exon3;Parent=MS.gene46429.t1
chr1.2 CDS 44293012 44293172 44293012 ID=cds.MS.gene46429.t1;Parent=MS.gene46429.t1
chr1.2 exon 44291445 44291552 44291445 ID=MS.gene46429.t1.exon4;Parent=MS.gene46429.t1
chr1.2 CDS 44291445 44291552 44291445 ID=cds.MS.gene46429.t1;Parent=MS.gene46429.t1
Gene Sequence

>MS.gene46429

ATGGAGAAAAACATGATAACTACCAAACTCTTCTTATTCTTTTCAACTCTCTTTCTTCTTCAAGCTTTCACCGACGCCACCGATGTTCACTATTGCGGTTTTTTCCTTTTCTTTCTCATTATTTTTTTTTTTTAGCTTTTTTAATTATTGTTTAGTTTTCATCTTCTGTTCAATATTGCGGTTTAACAATTCGATTTCTTTGCTGTCGATTTTTATTTATTTATTTTATTTGTTTCGTCAGCTAAATTATCGTTCCTGAATATTCAATGTTTATTTGTTTTTATTTGGAAGCTTGTTGTCCGAGTTGAATTAATCAATAATTTGCTGTCAATAGTAACTTATTTGCTTATGAAATTTTTTGGGACAAATTTGTCCGTAATTGCAATTATTCAAATATTAATTACCGGAAAATTTCATAAGCAAATAATTAATCTTAGTTTGGTCGATGCCTGATCAACGTGGAGGGGTCACATATACCGTGTAATTTGGACGAGGTCTAAAAATAGCTTTGTAAACAAAAAAATATACACAAATTTTGGATTATTCATGTTTTTACCCTATTAAATTCTTTTGGGGAGAAGTCCAAAAATAGCTTTTGTAAAGGGTTAAAATATGAATAATTCAAAATACAGGTGTGGAAACTGTGTATTTTATTTCACAGGTGCTATTTCTGGACCTTGCCCAAATTACAGGGGTTATTTTAGGTATTGACCCTTCAATTAATAGTATAAGTTTACATAGAGACTATTTTGACTTACACATTACAATTTGAGATTTGTATTCGACAATTTGTGCAAAAATGTGCTTGCTAGGCCTAGTTTGACATAAGTTTTGTGATACTGTTTTGACGAACCTAATAAAACAGGTTATGACAGTTCTCATAAGCTTTTTTCAGCTTATAGCATATACAAAAAATTTATGATAAGCACATGTGCTATAAGCTGCAAATAAGCTGTTTATCCAAACAGATATAATTTAATTTAAACTGTTTTGTTGTATTAGTGTTACTTTAATTAAGTAAACCATTACCTAATTATCTTTTATGTATGTCATGTCACAGGTAAGAAAGATGGCTATGATGTTCAAGTTAAAGGAGTTGAAATATCTCCTGAGCCCGTTGCAAGAGGCCAGCCTGCTACATTCACCATTTCTGCAACTACAAGTAATACTTATATTCACTTGTTTTTCTTCTGTTACTGTGTTTCTTTCCTTTTGTTTTTTAAAATTAGATTGTTATATCTATTTTCATGCATTTGGTGTCTCTTTATGCACATGTGTGCCTGTACTATATTTTACCTTTTTAAGTGTTTGTTCCGAGCATGGTAATTAATGTTTAGAATTTCAGTGCGATTATGTCATAGTTTTACTCAAATTCCGCTACATAATATTGATATAATACTGCAATTTTACCACATTCTATCATAGAATAATAGCTATCTATTTGTTCAAATTCTGCTACGCCGTTGTGTTATAGTGCTGCTATGGCCGCTATTCGGTGTTGCATTATGTGTAGAAATAGATGAGGTTTTGATGCATAATGAGTTTGCCTTCTTTTCTCTAATCCAATCATTTCATGACTCAGGTCAAGCATTATCAGAAGGGAAACTAGTGGTTGATGTGTCGTATTTTGGATGGCATGTATATAGTGAGACCCATGACCTTTGTGGAGAATCATCTTGCCCTATTTCGGTTGGTGATTTTGTGATTGCTCATTCACAAGTTTTACCTGCATACACCCCACCTGTAAGTCGTTGCTATAAGTTTTATTCCTTGAATAAAATGTGTTCGTGTGTGCTTGTAGTTTTTGGCAATAGGAAGTATATCTATATATGCTAGTACAAATTTGCATTATTGGCTTCTCCAATACTTTGTGTTATGTCATTTAGATATCCTAGGAAAGGGACTGACATCTGTGATAACGCTAATGTCGTCTTATCTGTCTTGGCATGTTATATATGTTCAAATTCTTAGATAGTATTAACACAATATCTGTTTTCAAATGTTTTTACAATGATTTGAGCATTGGAGTGTTAAGTCAATATGGTTAAGGTGAAATTTGTAGTTGGTGTTCTCATAATCTCATGAATGATGCTGTTTGTTTTGACAGATCATGAATGATACTGCTAGTAACCTTTGTGTTGGTATATGGAAAGAATTCCCAAAACTAAGCAGACCTAATAACCAAGAGAACAATTCTAACTAGAATAAAGATTCAAAATACATTAAGGATTTCTTCTTGTTGTGAAGAGATTCAAAGAGAAGATACAAAGGGTATCAATGAATATGACAAACATGTACACAAGGCTACCCCAAAGACTTTCACACTAGAGCATTAAACTATCTTTCCCCTCTATCCTTGAGGGCTATAATTTAAAGGCATTCTAAGAATAACCAGAATAACAACTATTAACAAGCACTTATCAAACTTATCAACATACTAACTTCTAATTAACTTCTTAACTCCATTTCTAACAAACTCCCCTTTATTCACAGATACATAAGTTGATCCTTTTTCCAATGTAGAAATGATAGTTCCACCGTTTGAGATTTTAGGGTCTAGGTTTTTGGTACTGGGACATGTAACAACAACTAATGTTTAGATAATGATTTTTTTCCCCTCAATGCTATATTGACAAATTCCTAGTTCGCTCTTCTGTGTTCATTGCTAATGCTATGAGAATGTTAAATTGTGATTCATCTTTCCCTTCAAGCGGTTTAAAAGTTGAATTAGGTTTTGGCTCTCACTTTTTGTTTCCTTTGTGTTATCAATTCTTGTCTCATTATGAGTGTCACATTTGCAAAAAAAAAAAAAAATTATTTCAAAATGAGTGTCACTTTCAATTTTCAATGCAACATAATTACTTTTTTCCAATTGTATCCTCTAATTTATACTATATGCATCACTCCCAACTCAATATCTTCCATTTTGCATTTATGACATTGGTGAATACACCAATACTTGATAAGGTTGATTTGGTAAAAGTTATTATTTTTTATGTCATTTATAGTTTCTCCTTAATTTATGTGAAATAACCAAATGCGACACTCATAATGGAACAGGGGAATTTTTAAGTGTTTGTTTGCACTGGAATATGTTTTTTAACAGTGTTCAATTACACAGTACTGTCTCCTTTTTTGTTTAATGCTAGTCTGTTATATTTATTTTCAACGTCATAGTTCTTACCATCTGTTGTAATTGCAGGGTTCATACTCTTTGAAGATGAAGCTGTATGATGGAAACAACAATGAGTTGACTTGCATTACATTTGGTTTTGATGTTGGGTTTTTTTCCTCTGTGGCTGATATCTAA
Protein sequence

>MS.gene46429.t1

MEKNMITTKLFLFFSTLFLLQAFTDATDVHYCGKKDGYDVQVKGVEISPEPVARGQPATFTISATTSQALSEGKLVVDVSYFGWHVYSETHDLCGESSCPISVGDFVIAHSQVLPAYTPPGSYSLKMKLYDGNNNELTCITFGFDVGFFSSVADI