Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46954.t1 | XP_013459616.1 | 95.4 | 241 | 11 | 0 | 1 | 241 | 1 | 241 | 3.60E-125 | 457.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46954.t1 | Q9SS37 | 56.7 | 247 | 97 | 3 | 1 | 239 | 1 | 245 | 4.0e-77 | 289.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46954.t1 | A0A072UVI7 | 95.4 | 241 | 11 | 0 | 1 | 241 | 1 | 241 | 2.6e-125 | 457.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049424 | MS.gene46954 | 0.805686 | 1.18E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene028160 | MS.gene46954 | PPI |
| MS.gene023287 | MS.gene46954 | PPI |
| MS.gene46954 | MS.gene34943 | PPI |
| MS.gene46954 | MS.gene08330 | PPI |
| MS.gene46954 | MS.gene028158 | PPI |
| MS.gene46954 | MS.gene35007 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46954.t1 | MTR_3g449880 | 95.614 | 228 | 10 | 0 | 1 | 228 | 1 | 228 | 9.62e-161 | 444 |
| MS.gene46954.t1 | MTR_3g449880 | 94.536 | 183 | 10 | 0 | 59 | 241 | 37 | 219 | 4.54e-116 | 331 |
| MS.gene46954.t1 | MTR_5g090340 | 65.560 | 241 | 80 | 2 | 1 | 239 | 46 | 285 | 7.58e-106 | 307 |
| MS.gene46954.t1 | MTR_5g090340 | 65.560 | 241 | 80 | 2 | 1 | 239 | 49 | 288 | 1.07e-105 | 307 |
| MS.gene46954.t1 | MTR_8g099060 | 48.858 | 219 | 106 | 2 | 29 | 241 | 42 | 260 | 1.33e-69 | 214 |
| MS.gene46954.t1 | MTR_8g028450 | 46.698 | 212 | 101 | 1 | 36 | 235 | 55 | 266 | 2.20e-65 | 204 |
| MS.gene46954.t1 | MTR_1g099500 | 46.154 | 195 | 105 | 0 | 37 | 231 | 45 | 239 | 4.89e-59 | 187 |
| MS.gene46954.t1 | MTR_1g109630 | 34.597 | 211 | 128 | 3 | 35 | 241 | 2 | 206 | 2.84e-38 | 132 |
| MS.gene46954.t1 | MTR_3g062910 | 31.390 | 223 | 150 | 2 | 5 | 226 | 10 | 230 | 1.40e-32 | 119 |
| MS.gene46954.t1 | MTR_4g014700 | 35.294 | 187 | 121 | 0 | 41 | 227 | 5 | 191 | 1.18e-31 | 115 |
| MS.gene46954.t1 | MTR_1g107445 | 36.813 | 182 | 115 | 0 | 50 | 231 | 9 | 190 | 6.61e-26 | 100 |
| MS.gene46954.t1 | MTR_5g018250 | 31.073 | 177 | 122 | 0 | 55 | 231 | 29 | 205 | 4.62e-25 | 99.0 |
| MS.gene46954.t1 | MTR_6g012460 | 33.140 | 172 | 115 | 0 | 60 | 231 | 14 | 185 | 2.95e-23 | 93.6 |
| MS.gene46954.t1 | MTR_5g018080 | 33.333 | 141 | 94 | 0 | 59 | 199 | 15 | 155 | 9.76e-21 | 85.9 |
| MS.gene46954.t1 | MTR_5g018190 | 32.877 | 146 | 98 | 0 | 63 | 208 | 284 | 429 | 2.86e-20 | 89.4 |
| MS.gene46954.t1 | MTR_5g018110 | 33.099 | 142 | 95 | 0 | 62 | 203 | 344 | 485 | 1.65e-18 | 84.3 |
| MS.gene46954.t1 | MTR_5g090440 | 61.818 | 55 | 17 | 1 | 189 | 239 | 9 | 63 | 4.90e-16 | 70.9 |
| MS.gene46954.t1 | MTR_6g012460 | 35.115 | 131 | 85 | 0 | 60 | 190 | 14 | 144 | 4.64e-15 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46954.t1 | AT3G10260 | 56.680 | 247 | 97 | 3 | 1 | 239 | 1 | 245 | 3.44e-103 | 299 |
| MS.gene46954.t1 | AT3G10260 | 56.680 | 247 | 97 | 3 | 1 | 239 | 1 | 245 | 3.44e-103 | 299 |
| MS.gene46954.t1 | AT3G10260 | 56.452 | 248 | 98 | 3 | 1 | 240 | 21 | 266 | 6.01e-103 | 300 |
| MS.gene46954.t1 | AT2G46170 | 48.756 | 201 | 103 | 0 | 31 | 231 | 40 | 240 | 2.59e-67 | 208 |
| MS.gene46954.t1 | AT3G61560 | 47.959 | 196 | 102 | 0 | 36 | 231 | 45 | 240 | 1.71e-64 | 201 |
| MS.gene46954.t1 | AT3G61560 | 47.959 | 196 | 102 | 0 | 36 | 231 | 45 | 240 | 1.71e-64 | 201 |
| MS.gene46954.t1 | AT1G64090 | 45.729 | 199 | 108 | 0 | 33 | 231 | 38 | 236 | 4.89e-64 | 200 |
| MS.gene46954.t1 | AT1G64090 | 42.326 | 215 | 108 | 1 | 33 | 231 | 38 | 252 | 4.74e-60 | 191 |
| MS.gene46954.t1 | AT4G11220 | 40.777 | 206 | 118 | 1 | 40 | 241 | 66 | 271 | 8.15e-60 | 190 |
| MS.gene46954.t1 | AT4G23630 | 43.204 | 206 | 113 | 1 | 40 | 241 | 70 | 275 | 5.24e-59 | 188 |
| MS.gene46954.t1 | AT4G23630 | 43.204 | 206 | 113 | 1 | 40 | 241 | 70 | 275 | 5.24e-59 | 188 |
| MS.gene46954.t1 | AT5G41600 | 44.041 | 193 | 108 | 0 | 40 | 232 | 49 | 241 | 1.33e-57 | 184 |
| MS.gene46954.t1 | AT3G61560 | 49.057 | 159 | 81 | 0 | 31 | 189 | 40 | 198 | 3.28e-51 | 166 |
| MS.gene46954.t1 | AT4G01230 | 40.299 | 201 | 117 | 1 | 31 | 231 | 42 | 239 | 5.15e-49 | 161 |
| MS.gene46954.t1 | AT3G18260 | 38.537 | 205 | 122 | 1 | 39 | 239 | 19 | 223 | 1.49e-48 | 159 |
| MS.gene46954.t1 | AT4G01230 | 39.303 | 201 | 117 | 2 | 31 | 231 | 42 | 237 | 1.13e-45 | 152 |
| MS.gene46954.t1 | AT2G46170 | 48.905 | 137 | 70 | 0 | 31 | 167 | 40 | 176 | 5.49e-43 | 144 |
| MS.gene46954.t1 | AT3G10915 | 29.954 | 217 | 148 | 1 | 15 | 231 | 1 | 213 | 8.40e-34 | 122 |
| MS.gene46954.t1 | AT3G10915 | 31.122 | 196 | 135 | 0 | 37 | 232 | 44 | 239 | 1.66e-33 | 121 |
| MS.gene46954.t1 | AT3G10915 | 29.817 | 218 | 148 | 2 | 15 | 231 | 1 | 214 | 4.31e-32 | 117 |
| MS.gene46954.t1 | AT2G15280 | 31.720 | 186 | 127 | 0 | 47 | 232 | 2 | 187 | 8.72e-32 | 115 |
| MS.gene46954.t1 | AT3G19460 | 33.696 | 184 | 122 | 0 | 51 | 234 | 14 | 197 | 4.73e-29 | 108 |
| MS.gene46954.t1 | AT3G19460 | 33.696 | 184 | 122 | 0 | 51 | 234 | 14 | 197 | 4.73e-29 | 108 |
| MS.gene46954.t1 | AT3G19460 | 33.696 | 184 | 122 | 0 | 51 | 234 | 14 | 197 | 4.73e-29 | 108 |
| MS.gene46954.t1 | AT3G10915 | 27.083 | 240 | 148 | 3 | 15 | 231 | 1 | 236 | 9.04e-27 | 103 |
| MS.gene46954.t1 | AT1G68230 | 33.696 | 184 | 116 | 2 | 50 | 231 | 22 | 201 | 3.43e-26 | 101 |
| MS.gene46954.t1 | AT3G10915 | 27.933 | 179 | 129 | 0 | 54 | 232 | 4 | 182 | 8.88e-25 | 97.4 |
| MS.gene46954.t1 | AT3G10915 | 28.161 | 174 | 125 | 0 | 59 | 232 | 8 | 181 | 1.41e-24 | 97.1 |
| MS.gene46954.t1 | AT3G54120 | 31.250 | 192 | 132 | 0 | 36 | 227 | 1 | 192 | 4.32e-23 | 93.2 |
| MS.gene46954.t1 | AT3G19460 | 29.817 | 218 | 119 | 3 | 51 | 234 | 14 | 231 | 3.11e-22 | 91.7 |
| MS.gene46954.t1 | AT3G19460 | 29.817 | 218 | 119 | 3 | 51 | 234 | 14 | 231 | 3.11e-22 | 91.7 |
| MS.gene46954.t1 | AT3G19460 | 29.187 | 209 | 114 | 3 | 60 | 234 | 7 | 215 | 5.28e-19 | 82.8 |
| MS.gene46954.t1 | AT3G19460 | 29.187 | 209 | 114 | 3 | 60 | 234 | 7 | 215 | 5.28e-19 | 82.8 |
| MS.gene46954.t1 | AT1G68230 | 34.965 | 143 | 87 | 2 | 50 | 190 | 22 | 160 | 9.14e-19 | 80.9 |
| MS.gene46954.t1 | AT3G10915 | 28.571 | 154 | 106 | 1 | 15 | 168 | 1 | 150 | 4.31e-17 | 76.3 |
| MS.gene46954.t1 | AT2G23640 | 24.294 | 177 | 134 | 0 | 61 | 237 | 18 | 194 | 1.61e-14 | 70.5 |
| MS.gene46954.t1 | AT2G15280 | 27.586 | 116 | 84 | 0 | 47 | 162 | 2 | 117 | 5.83e-12 | 62.4 |
Find 40 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAACTGGTGCAACAATTATA+TGG | 0.199383 | 3.2:-37686205 | MS.gene46954:CDS |
| AACTTTGTGCTCAAGGTCTT+TGG | 0.269918 | 3.2:-37683672 | MS.gene46954:CDS |
| GCCTGCTTGCTCAATTTCTA+TGG | 0.286324 | 3.2:-37686121 | MS.gene46954:CDS |
| ATGTTCACAAATAACTCTTC+TGG | 0.294981 | 3.2:+37685931 | None:intergenic |
| ATGCTTCTAGCATGTTTAAC+AGG | 0.343523 | 3.2:-37686094 | MS.gene46954:intron |
| GTGAACATTGCAACTGTAAT+CGG | 0.350430 | 3.2:-37685916 | MS.gene46954:CDS |
| CAACCTTGTCGACACATTAT+CGG | 0.356122 | 3.2:-37686504 | MS.gene46954:CDS |
| TCCAGGTTGTCGTAAGTTTG+TGG | 0.393138 | 3.2:-37684607 | MS.gene46954:intron |
| AACTGGTGCAACAATTATAT+GGG | 0.403050 | 3.2:-37686204 | MS.gene46954:CDS |
| CCAGGTTGTCGTAAGTTTGT+GGG | 0.407558 | 3.2:-37684606 | MS.gene46954:intron |
| TGTGGGCTGGTTCAGTGATC+GGG | 0.419844 | 3.2:-37684589 | MS.gene46954:CDS |
| TGATTTGTCTTCCTCAAAGA+AGG | 0.421270 | 3.2:+37686463 | None:intergenic |
| TGTTCACAAATAACTCTTCT+GGG | 0.437588 | 3.2:+37685932 | None:intergenic |
| TTGTGGGCTGGTTCAGTGAT+CGG | 0.439695 | 3.2:-37684590 | MS.gene46954:CDS |
| TTATATGGGTGCTATTTGAA+TGG | 0.444221 | 3.2:-37686190 | MS.gene46954:CDS |
| CTTCAAGATGTTTCTTGTGA+AGG | 0.447481 | 3.2:-37685865 | MS.gene46954:CDS |
| TCATACCTTTCATAGAGAAC+TGG | 0.464929 | 3.2:+37683708 | None:intergenic |
| AACTATAGAAAGCTGGATGC+TGG | 0.477192 | 3.2:-37683636 | MS.gene46954:CDS |
| TCCGAGATCAACAGACTGTT+CGG | 0.480198 | 3.2:-37686428 | MS.gene46954:CDS |
| CTGGTTCAGTGATCGGGAGT+TGG | 0.488082 | 3.2:-37684583 | MS.gene46954:CDS |
| GCAAAATAACTATAGAAAGC+TGG | 0.488536 | 3.2:-37683643 | MS.gene46954:CDS |
| TCCGAACAGTCTGTTGATCT+CGG | 0.515369 | 3.2:+37686427 | None:intergenic |
| CTGTTGATCTCGGAGCTCAC+TGG | 0.516835 | 3.2:+37686437 | None:intergenic |
| GTTGTCGTAAGTTTGTGGGC+TGG | 0.521608 | 3.2:-37684602 | MS.gene46954:CDS |
| ACCATAGAAATTGAGCAAGC+AGG | 0.524128 | 3.2:+37686120 | None:intergenic |
| CACTTCCAGTTCTCTATGAA+AGG | 0.525840 | 3.2:-37683713 | MS.gene46954:CDS |
| CCTCCTAAAAGATGGTGTAC+AGG | 0.528013 | 3.2:+37686395 | None:intergenic |
| TGCAACTGTAATCGGAAATG+AGG | 0.543462 | 3.2:-37685908 | MS.gene46954:CDS |
| AGTTGACAACTTTGTGCTCA+AGG | 0.544627 | 3.2:-37683679 | MS.gene46954:CDS |
| ATGAGGTTAACCGTGGGTTG+AGG | 0.554577 | 3.2:-37685891 | MS.gene46954:CDS |
| AGTTCTCTATGAAAGGTATG+AGG | 0.559341 | 3.2:-37683706 | MS.gene46954:CDS |
| TGTCGACAAGGTTGTGAAGG+AGG | 0.569674 | 3.2:+37686513 | None:intergenic |
| CTGGATGCTGGTGTGCTCAA+AGG | 0.572299 | 3.2:-37683624 | MS.gene46954:CDS |
| ATGTGTCGACAAGGTTGTGA+AGG | 0.609913 | 3.2:+37686510 | None:intergenic |
| GCAACACGAGGTACTTGAGA+TGG | 0.628239 | 3.2:+37685958 | None:intergenic |
| ATCGGAAATGAGGTTAACCG+TGG | 0.634795 | 3.2:-37685898 | MS.gene46954:CDS |
| CTTGAAGAAACCTCAACCCA+CGG | 0.663353 | 3.2:+37685881 | None:intergenic |
| TCGGAAATGAGGTTAACCGT+GGG | 0.683014 | 3.2:-37685897 | MS.gene46954:CDS |
| TGTCCGATAATGTGTCGACA+AGG | 0.693508 | 3.2:+37686501 | None:intergenic |
| TCTTCTGGGACAGCAACACG+AGG | 0.706178 | 3.2:+37685946 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTCTTTTTATTTTATCTTT+TGG | - | chr3.2:37683844-37683863 | MS.gene46954:intron | 10.0% |
| !!! | AATCAAATTTTTTAATGATC+TGG | + | chr3.2:37684899-37684918 | None:intergenic | 15.0% |
| !!! | GTAGAAATAAATATTTTCTA+AGG | + | chr3.2:37685439-37685458 | None:intergenic | 15.0% |
| !! | AATTACATGTGCAAATATTT+GGG | + | chr3.2:37685672-37685691 | None:intergenic | 20.0% |
| !! | GTTGAAAATTTCAAAAGAAA+AGG | + | chr3.2:37684428-37684447 | None:intergenic | 20.0% |
| !! | TAATTACATGTGCAAATATT+TGG | + | chr3.2:37685673-37685692 | None:intergenic | 20.0% |
| !! | TTCTAAATCACACATATAAT+TGG | - | chr3.2:37684933-37684952 | MS.gene46954:intron | 20.0% |
| !! | TTCTTAAAAAGACATGATTT+CGG | - | chr3.2:37685722-37685741 | MS.gene46954:intron | 20.0% |
| !!! | AAACTTTTTTTCTTCAAATG+TGG | - | chr3.2:37685767-37685786 | MS.gene46954:intron | 20.0% |
| !!! | ATTTAATTTATATACATCGC+CGG | - | chr3.2:37684836-37684855 | MS.gene46954:intron | 20.0% |
| !!! | CAACTAATCTCTTTTTATAT+GGG | + | chr3.2:37685120-37685139 | None:intergenic | 20.0% |
| !!! | CTTCACTTTTAATTACAAAA+CGG | + | chr3.2:37686087-37686106 | None:intergenic | 20.0% |
| !!! | TCATCTACAAATATTTTACA+AGG | + | chr3.2:37686025-37686044 | None:intergenic | 20.0% |
| !!! | TCATTTTAAAGCATAAAAGA+AGG | - | chr3.2:37684727-37684746 | MS.gene46954:intron | 20.0% |
| !!! | TTCTCTTGTTTTAATTTATG+TGG | - | chr3.2:37684093-37684112 | MS.gene46954:intron | 20.0% |
| !!! | TTCTTTTATGCTTTAAAATG+AGG | + | chr3.2:37684728-37684747 | None:intergenic | 20.0% |
| ! | AAAAAAATCATCCTTCTTTG+AGG | - | chr3.2:37683661-37683680 | MS.gene46954:CDS | 25.0% |
| ! | AATTGATTAAAAAGCAAGCA+CGG | + | chr3.2:37684405-37684424 | None:intergenic | 25.0% |
| ! | ACATGTTATTGATATTGTCA+TGG | - | chr3.2:37684467-37684486 | MS.gene46954:intron | 25.0% |
| ! | AGATGAAATACTATGAAAAC+AGG | - | chr3.2:37686039-37686058 | MS.gene46954:intron | 25.0% |
| ! | ATTACATGTGCAAATATTTG+GGG | + | chr3.2:37685671-37685690 | None:intergenic | 25.0% |
| ! | ATTTGCACATGTAATTAAGA+GGG | - | chr3.2:37685676-37685695 | MS.gene46954:intron | 25.0% |
| ! | CCATATAAAAAGAGATTAGT+TGG | - | chr3.2:37685118-37685137 | MS.gene46954:intron | 25.0% |
| ! | TAGAATGTTGAAAAGAATGT+CGG | - | chr3.2:37685050-37685069 | MS.gene46954:intron | 25.0% |
| ! | TAGCTGAAGCATAAAAATAT+GGG | + | chr3.2:37686145-37686164 | None:intergenic | 25.0% |
| ! | TATTTGCACATGTAATTAAG+AGG | - | chr3.2:37685675-37685694 | MS.gene46954:intron | 25.0% |
| ! | TCTAAATTATGAACAAATGC+TGG | - | chr3.2:37686323-37686342 | MS.gene46954:intron | 25.0% |
| ! | TGCTATAATATTAAGTGTCA+AGG | - | chr3.2:37685274-37685293 | MS.gene46954:intron | 25.0% |
| ! | TTCAACATTCTATCTGTATT+GGG | + | chr3.2:37685042-37685061 | None:intergenic | 25.0% |
| ! | TTGACACTTAATATTATAGC+AGG | + | chr3.2:37685275-37685294 | None:intergenic | 25.0% |
| ! | TTGTAATTAAAAGTGAAGAC+TGG | - | chr3.2:37686089-37686108 | MS.gene46954:intron | 25.0% |
| ! | TTTCAACATTCTATCTGTAT+TGG | + | chr3.2:37685043-37685062 | None:intergenic | 25.0% |
| !! | AATCTCTTTTTATATGGGAT+CGG | + | chr3.2:37685115-37685134 | None:intergenic | 25.0% |
| !! | CCAACTAATCTCTTTTTATA+TGG | + | chr3.2:37685121-37685140 | None:intergenic | 25.0% |
| !! | CTATAGTTCAACATATTTTC+AGG | + | chr3.2:37686187-37686206 | None:intergenic | 25.0% |
| !! | GTCAAAAATGATATGTTTTG+TGG | - | chr3.2:37685312-37685331 | MS.gene46954:intron | 25.0% |
| !!! | ATGTCTTTTTAAGAAATGTG+GGG | + | chr3.2:37685717-37685736 | None:intergenic | 25.0% |
| !!! | ATTTCTGCTAGTTTTTTAAC+TGG | - | chr3.2:37683914-37683933 | MS.gene46954:intron | 25.0% |
| !!! | CATGTCTTTTTAAGAAATGT+GGG | + | chr3.2:37685718-37685737 | None:intergenic | 25.0% |
| !!! | TCAAAGAAGGATGATTTTTT+TGG | + | chr3.2:37683662-37683681 | None:intergenic | 25.0% |
| !!! | TCATGTCTTTTTAAGAAATG+TGG | + | chr3.2:37685719-37685738 | None:intergenic | 25.0% |
| !!! | TTTTTGACTGTCATCTATAT+TGG | - | chr3.2:37685581-37685600 | MS.gene46954:intron | 25.0% |
| AAATCCCTTAGTAAATAACC+TGG | + | chr3.2:37684820-37684839 | None:intergenic | 30.0% | |
| AACTGGTGCAACAATTATAT+GGG | - | chr3.2:37683931-37683950 | MS.gene46954:intron | 30.0% | |
| ACAATGCACATGTTTGATAA+AGG | + | chr3.2:37684379-37684398 | None:intergenic | 30.0% | |
| AGTGTAAAAAACCTTTACAC+CGG | + | chr3.2:37684858-37684877 | None:intergenic | 30.0% | |
| ATGTTCACAAATAACTCTTC+TGG | + | chr3.2:37684207-37684226 | None:intergenic | 30.0% | |
| CTACCATATCAACTAAGAAA+AGG | + | chr3.2:37684508-37684527 | None:intergenic | 30.0% | |
| CTAGCTGAAGCATAAAAATA+TGG | + | chr3.2:37686146-37686165 | None:intergenic | 30.0% | |
| GCAAAATAACTATAGAAAGC+TGG | - | chr3.2:37686492-37686511 | MS.gene46954:CDS | 30.0% | |
| GGTTAACTCTGAATGATAAA+TGG | + | chr3.2:37684358-37684377 | None:intergenic | 30.0% | |
| TAAAATGAGGAAAAGTGACA+AGG | + | chr3.2:37684715-37684734 | None:intergenic | 30.0% | |
| TAACTGGTGCAACAATTATA+TGG | - | chr3.2:37683930-37683949 | MS.gene46954:intron | 30.0% | |
| TAACTTCTATATCGCAAAGA+TGG | + | chr3.2:37684637-37684656 | None:intergenic | 30.0% | |
| TCAAAAGATGAAAAGAAAGC+CGG | + | chr3.2:37685612-37685631 | None:intergenic | 30.0% | |
| TGACAAGGATATTGAAAGAT+GGG | + | chr3.2:37684700-37684719 | None:intergenic | 30.0% | |
| TGTTCACAAATAACTCTTCT+GGG | + | chr3.2:37684206-37684225 | None:intergenic | 30.0% | |
| TTAAAGCATAAAAGAAGGCA+TGG | - | chr3.2:37684732-37684751 | MS.gene46954:intron | 30.0% | |
| TTATCAGAAAGAACTAAACC+AGG | + | chr3.2:37686276-37686295 | None:intergenic | 30.0% | |
| TTCATAACATCATACTGCAT+AGG | - | chr3.2:37684584-37684603 | MS.gene46954:CDS | 30.0% | |
| ! | ACTGGTCTGCAAAAAATATA+TGG | - | chr3.2:37685966-37685985 | MS.gene46954:intron | 30.0% |
| ! | ATATGCTCTAGTTCATGAAA+TGG | - | chr3.2:37685865-37685884 | MS.gene46954:CDS | 30.0% |
| ! | GAAACAAATGTTTTGTCGAA+AGG | - | chr3.2:37686382-37686401 | MS.gene46954:intron | 30.0% |
| ! | GCTTTCTTTTCATCTTTTGA+TGG | - | chr3.2:37685612-37685631 | MS.gene46954:intron | 30.0% |
| ! | TCAGGAGAAAAGTTTTCATA+GGG | + | chr3.2:37686169-37686188 | None:intergenic | 30.0% |
| ! | TGTTAAACGTTTTACACTGA+CGG | - | chr3.2:37684973-37684992 | MS.gene46954:intron | 30.0% |
| ! | TTCAGGAGAAAAGTTTTCAT+AGG | + | chr3.2:37686170-37686189 | None:intergenic | 30.0% |
| ! | TTCTCTACTATGTTTTGTCT+TGG | - | chr3.2:37683985-37684004 | MS.gene46954:intron | 30.0% |
| ! | TTTTCTGCTGTGATTTTATC+AGG | + | chr3.2:37683602-37683621 | None:intergenic | 30.0% |
| !! | CTTTTCTTAGTTGATATGGT+AGG | - | chr3.2:37684506-37684525 | MS.gene46954:intron | 30.0% |
| !! | TCTGAAATACTTTTGCAAGT+GGG | - | chr3.2:37685793-37685812 | MS.gene46954:intron | 30.0% |
| !! | TGACCTTTTCTTAGTTGATA+TGG | - | chr3.2:37684502-37684521 | MS.gene46954:intron | 30.0% |
| !! | TGTCTTTTTAAGAAATGTGG+GGG | + | chr3.2:37685716-37685735 | None:intergenic | 30.0% |
| !! | TTATATGGGTGCTATTTGAA+TGG | - | chr3.2:37683945-37683964 | MS.gene46954:intron | 30.0% |
| !!! | TTCTGAAATACTTTTGCAAG+TGG | - | chr3.2:37685792-37685811 | MS.gene46954:intron | 30.0% |
| AAAAACTGGCATAAGAAAGC+TGG | + | chr3.2:37685992-37686011 | None:intergenic | 35.0% | |
| AAGGACACAGATTGAAAAAC+TGG | + | chr3.2:37686006-37686025 | None:intergenic | 35.0% | |
| ATAGTAAGATGCAGAGATGA+AGG | - | chr3.2:37686203-37686222 | MS.gene46954:CDS | 35.0% | |
| ATATGGGTCTCTTTACTTTG+AGG | + | chr3.2:37686129-37686148 | None:intergenic | 35.0% | |
| ATATTGAAAGATGGGATAGC+TGG | + | chr3.2:37684692-37684711 | None:intergenic | 35.0% | |
| ATGCTTCTAGCATGTTTAAC+AGG | - | chr3.2:37684041-37684060 | MS.gene46954:intron | 35.0% | |
| CTTCAAGATGTTTCTTGTGA+AGG | - | chr3.2:37684270-37684289 | MS.gene46954:intron | 35.0% | |
| GAAGTTACTTAAGAGTCGAT+TGG | - | chr3.2:37684650-37684669 | MS.gene46954:intron | 35.0% | |
| GGATGTCAGCAGAATAAATA+TGG | + | chr3.2:37684616-37684635 | None:intergenic | 35.0% | |
| GTGAACATTGCAACTGTAAT+CGG | - | chr3.2:37684219-37684238 | MS.gene46954:intron | 35.0% | |
| GTGACAAGGATATTGAAAGA+TGG | + | chr3.2:37684701-37684720 | None:intergenic | 35.0% | |
| TCATACCTTTCATAGAGAAC+TGG | + | chr3.2:37686430-37686449 | None:intergenic | 35.0% | |
| TCGTCCAGGTTATTTACTAA+GGG | - | chr3.2:37684813-37684832 | MS.gene46954:intron | 35.0% | |
| TTCGTCCAGGTTATTTACTA+AGG | - | chr3.2:37684812-37684831 | MS.gene46954:intron | 35.0% | |
| TTTAGGAGGTGGAAAATGTA+CGG | - | chr3.2:37683754-37683773 | MS.gene46954:intron | 35.0% | |
| ! | AAACCTGTACACCATCTTTT+AGG | - | chr3.2:37683737-37683756 | MS.gene46954:intron | 35.0% |
| ! | AGTTCTCTATGAAAGGTATG+AGG | - | chr3.2:37686429-37686448 | MS.gene46954:CDS | 35.0% |
| ! | ATTTTCCACCTCCTAAAAGA+TGG | + | chr3.2:37683751-37683770 | None:intergenic | 35.0% |
| ! | CATTATTGTGCAAAGTGTCA+AGG | - | chr3.2:37685375-37685394 | MS.gene46954:intron | 35.0% |
| ! | TGATTTGTCTTCCTCAAAGA+AGG | + | chr3.2:37683675-37683694 | None:intergenic | 35.0% |
| !! | CTATGTTTTGTCTTGGTTCT+TGG | - | chr3.2:37683992-37684011 | MS.gene46954:intron | 35.0% |
| !! | TTTTTAAGAAATGTGGGGGT+GGG | + | chr3.2:37685712-37685731 | None:intergenic | 35.0% |
| AACTATAGAAAGCTGGATGC+TGG | - | chr3.2:37686499-37686518 | MS.gene46954:CDS | 40.0% | |
| AACTTTGTGCTCAAGGTCTT+TGG | - | chr3.2:37686463-37686482 | MS.gene46954:CDS | 40.0% | |
| ACCATAGAAATTGAGCAAGC+AGG | + | chr3.2:37684018-37684037 | None:intergenic | 40.0% | |
| AGTTGACAACTTTGTGCTCA+AGG | - | chr3.2:37686456-37686475 | MS.gene46954:CDS | 40.0% | |
| ATACTGCTAGTGCTAGGTAT+GGG | + | chr3.2:37685847-37685866 | None:intergenic | 40.0% | |
| ATGAGGTCTGCTAATACACT+AGG | - | chr3.2:37685248-37685267 | MS.gene46954:intron | 40.0% | |
| ATGGGGAAGCAACCTTAATA+GGG | + | chr3.2:37685829-37685848 | None:intergenic | 40.0% | |
| CAACCTTGTCGACACATTAT+CGG | - | chr3.2:37683631-37683650 | MS.gene46954:CDS | 40.0% | |
| CACTTCCAGTTCTCTATGAA+AGG | - | chr3.2:37686422-37686441 | MS.gene46954:CDS | 40.0% | |
| CAGGAAGCAGATTGAAAACA+AGG | - | chr3.2:37686058-37686077 | MS.gene46954:intron | 40.0% | |
| GCCATAACAGTGACAAAATG+AGG | + | chr3.2:37685343-37685362 | None:intergenic | 40.0% | |
| GGAAGATTTCCTCCCTATTA+AGG | - | chr3.2:37685814-37685833 | MS.gene46954:intron | 40.0% | |
| GTCATCTATATTGGTGAGTC+CGG | - | chr3.2:37685590-37685609 | MS.gene46954:intron | 40.0% | |
| TATACTGCTAGTGCTAGGTA+TGG | + | chr3.2:37685848-37685867 | None:intergenic | 40.0% | |
| TATATACATCGCCGGTGTAA+AGG | - | chr3.2:37684844-37684863 | MS.gene46954:intron | 40.0% | |
| TATGGGGAAGCAACCTTAAT+AGG | + | chr3.2:37685830-37685849 | None:intergenic | 40.0% | |
| TGAAAGTTGAAACACTCTCC+AGG | - | chr3.2:37685511-37685530 | MS.gene46954:intron | 40.0% | |
| TGATTAAAAAGCAAGCACGG+AGG | + | chr3.2:37684402-37684421 | None:intergenic | 40.0% | |
| TGCAACTGTAATCGGAAATG+AGG | - | chr3.2:37684227-37684246 | MS.gene46954:intron | 40.0% | |
| ! | AAAGATGGGATAGCTGGTTT+CGG | + | chr3.2:37684686-37684705 | None:intergenic | 40.0% |
| ! | GAAGGCATGGTGTATGTAAA+TGG | - | chr3.2:37684745-37684764 | MS.gene46954:intron | 40.0% |
| ! | GCCTCATTTTGTCACTGTTA+TGG | - | chr3.2:37685339-37685358 | MS.gene46954:intron | 40.0% |
| ! | TGTGCACAGTATTTTGTCGT+AGG | - | chr3.2:37684545-37684564 | MS.gene46954:intron | 40.0% |
| !! | CTTTTTAAGAAATGTGGGGG+TGG | + | chr3.2:37685713-37685732 | None:intergenic | 40.0% |
| !! | GGCTTTAAATGCTATAGCTG+CGG | - | chr3.2:37683865-37683884 | MS.gene46954:intron | 40.0% |
| ACAAGTCGATAACTCTCAGG+GGG | + | chr3.2:37685896-37685915 | None:intergenic | 45.0% | |
| ACCACAAGTCGATAACTCTC+AGG | + | chr3.2:37685899-37685918 | None:intergenic | 45.0% | |
| ATCGGAAATGAGGTTAACCG+TGG | - | chr3.2:37684237-37684256 | MS.gene46954:intron | 45.0% | |
| CACAAGTCGATAACTCTCAG+GGG | + | chr3.2:37685897-37685916 | None:intergenic | 45.0% | |
| CCACAAGTCGATAACTCTCA+GGG | + | chr3.2:37685898-37685917 | None:intergenic | 45.0% | |
| CCAGGTTGTCGTAAGTTTGT+GGG | - | chr3.2:37685529-37685548 | MS.gene46954:intron | 45.0% | |
| CCTCCTAAAAGATGGTGTAC+AGG | + | chr3.2:37683743-37683762 | None:intergenic | 45.0% | |
| CTTACCTAGAGCCCCAAAAA+GGG | - | chr3.2:37685933-37685952 | MS.gene46954:CDS | 45.0% | |
| CTTGAAGAAACCTCAACCCA+CGG | + | chr3.2:37684257-37684276 | None:intergenic | 45.0% | |
| GAGCATATACTGCTAGTGCT+AGG | + | chr3.2:37685853-37685872 | None:intergenic | 45.0% | |
| GCCTGCTTGCTCAATTTCTA+TGG | - | chr3.2:37684014-37684033 | MS.gene46954:intron | 45.0% | |
| TACTGCTAGTGCTAGGTATG+GGG | + | chr3.2:37685846-37685865 | None:intergenic | 45.0% | |
| TCCAGGTTGTCGTAAGTTTG+TGG | - | chr3.2:37685528-37685547 | MS.gene46954:intron | 45.0% | |
| TCCGAACAGTCTGTTGATCT+CGG | + | chr3.2:37683711-37683730 | None:intergenic | 45.0% | |
| TCCGAGATCAACAGACTGTT+CGG | - | chr3.2:37683707-37683726 | MS.gene46954:CDS | 45.0% | |
| TCGGAAATGAGGTTAACCGT+GGG | - | chr3.2:37684238-37684257 | MS.gene46954:intron | 45.0% | |
| TCTATGCCTCCACATACGTT+GGG | + | chr3.2:37685198-37685217 | None:intergenic | 45.0% | |
| ! | ATGTGTCGACAAGGTTGTGA+AGG | + | chr3.2:37683628-37683647 | None:intergenic | 45.0% |
| ! | CCTGTACACCATCTTTTAGG+AGG | - | chr3.2:37683740-37683759 | MS.gene46954:intron | 45.0% |
| ! | TAGCTGCGGATGTTTTGCTA+TGG | - | chr3.2:37683879-37683898 | MS.gene46954:intron | 45.0% |
| ! | TGTCCGATAATGTGTCGACA+AGG | + | chr3.2:37683637-37683656 | None:intergenic | 45.0% |
| ! | TGTGCATAAAGTGTTCGTCC+AGG | - | chr3.2:37684799-37684818 | MS.gene46954:intron | 45.0% |
| !! | GTACACCATCTTTTAGGAGG+TGG | - | chr3.2:37683743-37683762 | MS.gene46954:intron | 45.0% |
| ACTAAATCTCACGAGCCAGC+TGG | - | chr3.2:37685167-37685186 | MS.gene46954:intron | 50.0% | |
| CCAGGCGTGTCTTTGTGAAT+AGG | + | chr3.2:37686258-37686277 | None:intergenic | 50.0% | |
| CCCACAAACTTACGACAACC+TGG | + | chr3.2:37685532-37685551 | None:intergenic | 50.0% | |
| CCTATTCACAAAGACACGCC+TGG | - | chr3.2:37686255-37686274 | MS.gene46954:CDS | 50.0% | |
| CTAAATCTCACGAGCCAGCT+GGG | - | chr3.2:37685168-37685187 | MS.gene46954:intron | 50.0% | |
| CTCTATGCCTCCACATACGT+TGG | + | chr3.2:37685199-37685218 | None:intergenic | 50.0% | |
| GCTTACCTAGAGCCCCAAAA+AGG | - | chr3.2:37685932-37685951 | MS.gene46954:CDS | 50.0% | |
| GGGAAGCAACCTTAATAGGG+AGG | + | chr3.2:37685826-37685845 | None:intergenic | 50.0% | |
| GTTGTCGTAAGTTTGTGGGC+TGG | - | chr3.2:37685533-37685552 | MS.gene46954:intron | 50.0% | |
| TGTCGACAAGGTTGTGAAGG+AGG | + | chr3.2:37683625-37683644 | None:intergenic | 50.0% | |
| TGTTGACCTCTGTTCGGATG+AGG | - | chr3.2:37685231-37685250 | MS.gene46954:intron | 50.0% | |
| ! | ATGAGGTTAACCGTGGGTTG+AGG | - | chr3.2:37684244-37684263 | MS.gene46954:intron | 50.0% |
| ! | GCAACACGAGGTACTTGAGA+TGG | + | chr3.2:37684180-37684199 | None:intergenic | 50.0% |
| ! | TGGAGGCATAGAGCTTACTC+CGG | - | chr3.2:37685206-37685225 | MS.gene46954:intron | 50.0% |
| ! | TTTTTGCAGACCAGTGCTCG+TGG | + | chr3.2:37685961-37685980 | None:intergenic | 50.0% |
| !! | CCCTGAGAGTTATCGACTTG+TGG | - | chr3.2:37685895-37685914 | MS.gene46954:CDS | 50.0% |
| !! | CTGCGGATGTTTTGCTATGG+AGG | - | chr3.2:37683882-37683901 | MS.gene46954:intron | 50.0% |
| !! | TTGTGGGCTGGTTCAGTGAT+CGG | - | chr3.2:37685545-37685564 | MS.gene46954:intron | 50.0% |
| AAAAAGGGAGCCACGAGCAC+TGG | - | chr3.2:37685948-37685967 | MS.gene46954:CDS | 55.0% | |
| AGCAGACCTCATCCGAACAG+AGG | + | chr3.2:37685240-37685259 | None:intergenic | 55.0% | |
| CCGAACAGAGGTCAACACAC+CGG | + | chr3.2:37685228-37685247 | None:intergenic | 55.0% | |
| CTGGATGCTGGTGTGCTCAA+AGG | - | chr3.2:37686511-37686530 | MS.gene46954:CDS | 55.0% | |
| CTGGTTCAGTGATCGGGAGT+TGG | - | chr3.2:37685552-37685571 | MS.gene46954:intron | 55.0% | |
| CTGTTGATCTCGGAGCTCAC+TGG | + | chr3.2:37683701-37683720 | None:intergenic | 55.0% | |
| ! | AGTGCTCGTGGCTCCCTTTT+TGG | + | chr3.2:37685949-37685968 | None:intergenic | 55.0% |
| ! | CCGGTGTGTTGACCTCTGTT+CGG | - | chr3.2:37685225-37685244 | MS.gene46954:intron | 55.0% |
| ! | GTGCTCGTGGCTCCCTTTTT+GGG | + | chr3.2:37685948-37685967 | None:intergenic | 55.0% |
| ! | TGCTCGTGGCTCCCTTTTTG+GGG | + | chr3.2:37685947-37685966 | None:intergenic | 55.0% |
| !! | TCTTCTGGGACAGCAACACG+AGG | + | chr3.2:37684192-37684211 | None:intergenic | 55.0% |
| !! | TGTGGGCTGGTTCAGTGATC+GGG | - | chr3.2:37685546-37685565 | MS.gene46954:intron | 55.0% |
| !!! | GGCTCCCTTTTTGGGGCTCT+AGG | + | chr3.2:37685940-37685959 | None:intergenic | 60.0% |
| ATACGTTGGGCCAGCCCAGC+TGG | + | chr3.2:37685185-37685204 | None:intergenic | 65.0% | |
| ATCTCACGAGCCAGCTGGGC+TGG | - | chr3.2:37685172-37685191 | MS.gene46954:intron | 65.0% | |
| ! | GGCTGGCCCAACGTATGTGG+AGG | - | chr3.2:37685189-37685208 | MS.gene46954:intron | 65.0% |
| !! | CTGGGCTGGCCCAACGTATG+TGG | - | chr3.2:37685186-37685205 | MS.gene46954:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 37683596 | 37686561 | 37683596 | ID=MS.gene46954 |
| chr3.2 | mRNA | 37683596 | 37686561 | 37683596 | ID=MS.gene46954.t1;Parent=MS.gene46954 |
| chr3.2 | exon | 37686387 | 37686561 | 37686387 | ID=MS.gene46954.t1.exon1;Parent=MS.gene46954.t1 |
| chr3.2 | CDS | 37686387 | 37686561 | 37686387 | ID=cds.MS.gene46954.t1;Parent=MS.gene46954.t1 |
| chr3.2 | exon | 37686095 | 37686275 | 37686095 | ID=MS.gene46954.t1.exon2;Parent=MS.gene46954.t1 |
| chr3.2 | CDS | 37686095 | 37686275 | 37686095 | ID=cds.MS.gene46954.t1;Parent=MS.gene46954.t1 |
| chr3.2 | exon | 37685843 | 37685984 | 37685843 | ID=MS.gene46954.t1.exon3;Parent=MS.gene46954.t1 |
| chr3.2 | CDS | 37685843 | 37685984 | 37685843 | ID=cds.MS.gene46954.t1;Parent=MS.gene46954.t1 |
| chr3.2 | exon | 37684555 | 37684624 | 37684555 | ID=MS.gene46954.t1.exon4;Parent=MS.gene46954.t1 |
| chr3.2 | CDS | 37684555 | 37684624 | 37684555 | ID=cds.MS.gene46954.t1;Parent=MS.gene46954.t1 |
| chr3.2 | exon | 37683596 | 37683753 | 37683596 | ID=MS.gene46954.t1.exon5;Parent=MS.gene46954.t1 |
| chr3.2 | CDS | 37683596 | 37683753 | 37683596 | ID=cds.MS.gene46954.t1;Parent=MS.gene46954.t1 |
| Gene Sequence |
| Protein sequence |
