Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47072.t1 | XP_013451347.1 | 98.2 | 279 | 5 | 0 | 1 | 279 | 1 | 279 | 9.80E-151 | 542.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47072.t1 | P57758 | 61.9 | 265 | 99 | 2 | 5 | 269 | 3 | 265 | 7.0e-89 | 328.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47072.t1 | A0A072U6W8 | 98.2 | 279 | 5 | 0 | 1 | 279 | 1 | 279 | 7.0e-151 | 542.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051582 | MS.gene47072 | 0.824247 | 8.95E-54 | -1.69E-46 |
| MS.gene053330 | MS.gene47072 | 0.829585 | 4.74E-55 | -1.69E-46 |
| MS.gene054102 | MS.gene47072 | 0.803869 | 2.84E-49 | -1.69E-46 |
| MS.gene05553 | MS.gene47072 | 0.821758 | 3.41E-53 | -1.69E-46 |
| MS.gene056723 | MS.gene47072 | 0.823503 | 1.34E-53 | -1.69E-46 |
| MS.gene058142 | MS.gene47072 | 0.824628 | 7.28E-54 | -1.69E-46 |
| MS.gene058276 | MS.gene47072 | 0.802736 | 4.87E-49 | -1.69E-46 |
| MS.gene059247 | MS.gene47072 | 0.8147 | 1.35E-51 | -1.69E-46 |
| MS.gene059868 | MS.gene47072 | 0.802562 | 5.29E-49 | -1.69E-46 |
| MS.gene060083 | MS.gene47072 | 0.807967 | 3.90E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47072.t1 | MTR_6g022180 | 98.208 | 279 | 5 | 0 | 1 | 279 | 1 | 279 | 0.0 | 559 |
| MS.gene47072.t1 | MTR_0018s0320 | 62.319 | 276 | 102 | 2 | 5 | 279 | 3 | 277 | 1.83e-130 | 371 |
| MS.gene47072.t1 | MTR_0018s0310 | 61.455 | 275 | 99 | 2 | 5 | 279 | 3 | 270 | 1.17e-118 | 341 |
| MS.gene47072.t1 | MTR_6g022210 | 59.851 | 269 | 106 | 1 | 4 | 272 | 2 | 268 | 1.06e-114 | 331 |
| MS.gene47072.t1 | MTR_6g022190 | 58.755 | 257 | 106 | 0 | 5 | 261 | 3 | 259 | 2.40e-108 | 315 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47072.t1 | AT5G40670 | 61.887 | 265 | 99 | 2 | 5 | 269 | 3 | 265 | 2.39e-118 | 340 |
Find 47 sgRNAs with CRISPR-Local
Find 239 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATATTGAAACCGAACATT+AGG | 0.283373 | 6.3:-15540370 | None:intergenic |
| GACTCTTGGGTGAATTTCTC+TGG | 0.292974 | 6.3:+15544545 | MS.gene47072:intron |
| TCCCTTCCAAATCTTGGCTT+TGG | 0.312529 | 6.3:+15543620 | MS.gene47072:CDS |
| AAAATAGCATACACCGTGTT+TGG | 0.343855 | 6.3:+15540108 | MS.gene47072:CDS |
| AATTAGCCAAAGCCAAGATT+TGG | 0.350379 | 6.3:-15543626 | None:intergenic |
| CAGCACAATGCAAGTAGTTC+TGG | 0.352114 | 6.3:+15544157 | MS.gene47072:intron |
| TAGCATTCCCTTCCAAATCT+TGG | 0.354878 | 6.3:+15543614 | MS.gene47072:CDS |
| ATGTTGTCATCGAGTTTAGA+AGG | 0.377471 | 6.3:-15545043 | None:intergenic |
| GATATTGAAACCGAACATTA+GGG | 0.417722 | 6.3:-15540369 | None:intergenic |
| GTTCCAAGTTGCAATTTATG+AGG | 0.419902 | 6.3:+15542216 | MS.gene47072:CDS |
| CCATTCCTCCACAGAAATCA+AGG | 0.431521 | 6.3:-15544381 | None:intergenic |
| GTGAATTTCTCTGGGAACCT+TGG | 0.434548 | 6.3:+15544554 | MS.gene47072:CDS |
| TGGAAAAGTATTGTTATCTC+TGG | 0.434586 | 6.3:+15544574 | MS.gene47072:CDS |
| TCAGCCACCGGCACATTTGA+AGG | 0.441029 | 6.3:-15545088 | None:intergenic |
| TGTACTTTAGCCCTAATGTT+CGG | 0.449324 | 6.3:+15540359 | MS.gene47072:CDS |
| GATGAGGTACAAGGTATGTT+TGG | 0.457726 | 6.3:-15540323 | None:intergenic |
| AGCACAGATGGATTTAGCAT+TGG | 0.502304 | 6.3:+15544349 | MS.gene47072:CDS |
| CCTTGATTTCTGTGGAGGAA+TGG | 0.503924 | 6.3:+15544381 | MS.gene47072:CDS |
| AAATATATCTCACTTAAAGA+TGG | 0.509564 | 6.3:-15543650 | None:intergenic |
| GAGTAGTTCAAAATAAATTG+AGG | 0.512738 | 6.3:-15540168 | None:intergenic |
| TTCATGATCAAGAGCACAGA+TGG | 0.515076 | 6.3:+15544337 | MS.gene47072:CDS |
| GCAACGTCATTTGCAGCTAC+AGG | 0.516019 | 6.3:-15542154 | None:intergenic |
| TAGCATACACCGTGTTTGGA+TGG | 0.518940 | 6.3:+15540112 | MS.gene47072:CDS |
| CAAGTCTCCTTCAAATGTGC+CGG | 0.533047 | 6.3:+15545081 | MS.gene47072:CDS |
| ATAAGATGGAGGAGATAGCT+TGG | 0.535790 | 6.3:+15540070 | None:intergenic |
| ACTCTTGGGTGAATTTCTCT+GGG | 0.540084 | 6.3:+15544546 | MS.gene47072:CDS |
| CAAAACAGCATGTGTTGAGA+AGG | 0.545875 | 6.3:-15542176 | None:intergenic |
| AACTATCAAATATATTCCAC+AGG | 0.552047 | 6.3:+15544181 | MS.gene47072:CDS |
| AACATTAGGGCTAAAGTACA+AGG | 0.554362 | 6.3:-15540356 | None:intergenic |
| AATGGCAAATTATGCTCAGA+TGG | 0.570881 | 6.3:+15544399 | MS.gene47072:CDS |
| GTTGGAAATTGTAGTGTGGT+GGG | 0.573982 | 6.3:+15540268 | MS.gene47072:intron |
| GCCAAAGCCAAGATTTGGAA+GGG | 0.574825 | 6.3:-15543621 | None:intergenic |
| ACTGTGGTGTGGATTACTGT+TGG | 0.575250 | 6.3:+15543577 | MS.gene47072:CDS |
| AGCCAAAGCCAAGATTTGGA+AGG | 0.577315 | 6.3:-15543622 | None:intergenic |
| GTCTCCTTCAAATGTGCCGG+TGG | 0.578990 | 6.3:+15545084 | MS.gene47072:CDS |
| AATGTGTTCCTTGATTTCTG+TGG | 0.579157 | 6.3:+15544373 | MS.gene47072:CDS |
| CATTTGAAGGAGACTTGATG+AGG | 0.585394 | 6.3:-15545075 | None:intergenic |
| GTGTTCCTTGATTTCTGTGG+AGG | 0.594358 | 6.3:+15544376 | MS.gene47072:CDS |
| ATTTGAAGGAGACTTGATGA+GGG | 0.600738 | 6.3:-15545074 | None:intergenic |
| ACAAGGAAGCATTGTAGATG+AGG | 0.601889 | 6.3:-15540339 | None:intergenic |
| GTACCTCATAAATTGCAACT+TGG | 0.607384 | 6.3:-15542219 | None:intergenic |
| AGTTGGAAATTGTAGTGTGG+TGG | 0.612895 | 6.3:+15540267 | MS.gene47072:intron |
| AGCATTGTAGATGAGGTACA+AGG | 0.656382 | 6.3:-15540332 | None:intergenic |
| AAAAGCAATCCATCCAAACA+CGG | 0.666967 | 6.3:-15540121 | None:intergenic |
| TTTGAAGGAGACTTGATGAG+GGG | 0.669572 | 6.3:-15545073 | None:intergenic |
| TGGGAATCATCACTGTGGTG+TGG | 0.672658 | 6.3:+15543566 | MS.gene47072:CDS |
| CACAATGGGAATCATCACTG+TGG | 0.754261 | 6.3:+15543561 | MS.gene47072:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATTCAAGAAAAAAAAA+GGG | + | chr6.3:15541929-15541948 | MS.gene47072:intron | 10.0% |
| !! | TATACAATAAAATCTAAAAA+AGG | + | chr6.3:15543119-15543138 | MS.gene47072:intron | 10.0% |
| !! | TCATAAAAATTTACAATTTA+AGG | - | chr6.3:15543373-15543392 | None:intergenic | 10.0% |
| !! | TTATTATTACCAAATTAAAT+AGG | - | chr6.3:15542574-15542593 | None:intergenic | 10.0% |
| !! | TTCTATTAAGAAAAAAATTA+AGG | + | chr6.3:15543685-15543704 | MS.gene47072:intron | 10.0% |
| !! | TTTATTAATGAAATTATCTT+TGG | - | chr6.3:15542676-15542695 | None:intergenic | 10.0% |
| !!! | AAACATATTAGATATTTTTT+TGG | + | chr6.3:15541008-15541027 | MS.gene47072:intron | 10.0% |
| !!! | ATTAAAATGCTTTAAAAAAA+AGG | - | chr6.3:15543947-15543966 | None:intergenic | 10.0% |
| !!! | TACAAATTTTGAAAAATATA+GGG | + | chr6.3:15541896-15541915 | MS.gene47072:intron | 10.0% |
| !!! | TATCTTAGTTAATTTTTTTT+AGG | - | chr6.3:15540796-15540815 | None:intergenic | 10.0% |
| !!! | TTACAAATTTTGAAAAATAT+AGG | + | chr6.3:15541895-15541914 | MS.gene47072:intron | 10.0% |
| !!! | TTTTGTTATCTTATTATTTA+AGG | + | chr6.3:15540211-15540230 | MS.gene47072:intron | 10.0% |
| !! | AAAAAAAAAAAAAGATTCTG+TGG | - | chr6.3:15541080-15541099 | None:intergenic | 15.0% |
| !! | AATGTAATAAGAAAAAGAAA+AGG | + | chr6.3:15540937-15540956 | MS.gene47072:intron | 15.0% |
| !! | AATGTAGTTAAAAATTCAAA+AGG | + | chr6.3:15543234-15543253 | MS.gene47072:intron | 15.0% |
| !! | ATTGAATAAAAATATGAGTA+TGG | - | chr6.3:15541477-15541496 | None:intergenic | 15.0% |
| !! | ATTTATCATTATATACAAGT+TGG | + | chr6.3:15542300-15542319 | MS.gene47072:intron | 15.0% |
| !! | GTAAAATTCAAGAAAAAAAA+AGG | + | chr6.3:15541928-15541947 | MS.gene47072:intron | 15.0% |
| !! | TATTAAGAAAAAAATTAAGG+AGG | + | chr6.3:15543688-15543707 | MS.gene47072:intron | 15.0% |
| !! | TTTAAAAAAAATATATGCGA+TGG | - | chr6.3:15542650-15542669 | None:intergenic | 15.0% |
| !! | TTTCAATATCATCAAAAATA+TGG | + | chr6.3:15540382-15540401 | MS.gene47072:CDS | 15.0% |
| !!! | AAACATTTTCCTATTTAATT+TGG | + | chr6.3:15542562-15542581 | MS.gene47072:intron | 15.0% |
| !!! | AACTCAATGTTTTAATATTT+TGG | - | chr6.3:15541424-15541443 | None:intergenic | 15.0% |
| !!! | ACATTCATTATTCTTTTTTT+TGG | - | chr6.3:15544788-15544807 | None:intergenic | 15.0% |
| !!! | ACTCAATGTTTTAATATTTT+GGG | - | chr6.3:15541423-15541442 | None:intergenic | 15.0% |
| !!! | CAAATGAGTAATAAATATTT+TGG | + | chr6.3:15542101-15542120 | MS.gene47072:intron | 15.0% |
| !!! | TAAATCCAAACAATATTTTT+TGG | - | chr6.3:15542285-15542304 | None:intergenic | 15.0% |
| !!! | TAATATGTTGATGAAATTAT+AGG | - | chr6.3:15542482-15542501 | None:intergenic | 15.0% |
| !!! | TATATAATGTAAACATTTTC+AGG | + | chr6.3:15544943-15544962 | MS.gene47072:intron | 15.0% |
| !!! | TATTTTTATTTTGGTTTGTT+TGG | + | chr6.3:15541755-15541774 | MS.gene47072:intron | 15.0% |
| !!! | TCGCATATATTTTTTTTAAA+AGG | + | chr6.3:15542650-15542669 | MS.gene47072:intron | 15.0% |
| !!! | TTTTACCAAAAAATATTGTT+TGG | + | chr6.3:15542277-15542296 | MS.gene47072:intron | 15.0% |
| !!! | TTTTCTTGAATTTTACATAT+TGG | - | chr6.3:15541924-15541943 | None:intergenic | 15.0% |
| !!! | TTTTTCTTAATAGAAGATTA+TGG | - | chr6.3:15543680-15543699 | None:intergenic | 15.0% |
| !! | AAATATATCTCACTTAAAGA+TGG | - | chr6.3:15543653-15543672 | None:intergenic | 20.0% |
| !! | AAGAATAAATATGCCAATAT+GGG | - | chr6.3:15543168-15543187 | None:intergenic | 20.0% |
| !! | AAGATAATTAGAGTTAGTTA+AGG | + | chr6.3:15541328-15541347 | MS.gene47072:intron | 20.0% |
| !! | AATCTGTCTAATTTAAATAG+GGG | + | chr6.3:15542029-15542048 | MS.gene47072:intron | 20.0% |
| !! | ATAAGAAAAAGAAAAGGATA+AGG | + | chr6.3:15540943-15540962 | MS.gene47072:intron | 20.0% |
| !! | ATATAAAATTAGATGCTGAA+TGG | - | chr6.3:15542446-15542465 | None:intergenic | 20.0% |
| !! | ATCAATATCAAAAATCACAA+TGG | + | chr6.3:15543546-15543565 | MS.gene47072:CDS | 20.0% |
| !! | ATGTTACTATAATGTGAATT+TGG | - | chr6.3:15544460-15544479 | None:intergenic | 20.0% |
| !! | CAATCTGTCTAATTTAAATA+GGG | + | chr6.3:15542028-15542047 | MS.gene47072:intron | 20.0% |
| !! | TAAACATATTAGATAACTTG+TGG | + | chr6.3:15541039-15541058 | MS.gene47072:intron | 20.0% |
| !! | TCAATATCAAAAATCACAAT+GGG | + | chr6.3:15543547-15543566 | MS.gene47072:CDS | 20.0% |
| !! | TCCATATTTAAGTAATCTTT+GGG | - | chr6.3:15540550-15540569 | None:intergenic | 20.0% |
| !! | TGTCATTGAAAAACAATATT+TGG | + | chr6.3:15544090-15544109 | MS.gene47072:intron | 20.0% |
| !! | TTCAATATGATGTAAAATAC+AGG | + | chr6.3:15544303-15544322 | MS.gene47072:intron | 20.0% |
| !!! | AATTTATTTTGAACTACTCA+AGG | + | chr6.3:15540172-15540191 | MS.gene47072:CDS | 20.0% |
| !!! | CTTATTACATTTTTCATAAG+CGG | - | chr6.3:15540928-15540947 | None:intergenic | 20.0% |
| !!! | TAGAAGATGTTTTAGATATT+TGG | + | chr6.3:15541175-15541194 | MS.gene47072:intron | 20.0% |
| !!! | TATTCTAATGCAAATTTTGT+AGG | - | chr6.3:15544681-15544700 | None:intergenic | 20.0% |
| !!! | TTTTTTTATTCTAGACTCTT+GGG | + | chr6.3:15544532-15544551 | MS.gene47072:intron | 20.0% |
| ! | AACTATCAAATATATTCCAC+AGG | + | chr6.3:15544181-15544200 | MS.gene47072:CDS | 25.0% |
| ! | AACTTATTTATGTGGAAAGT+TGG | + | chr6.3:15540250-15540269 | MS.gene47072:intron | 25.0% |
| ! | AAGAAGCAGAAACATAAAAA+AGG | - | chr6.3:15544656-15544675 | None:intergenic | 25.0% |
| ! | AATGTGATGCATAAAAAGTA+AGG | + | chr6.3:15541712-15541731 | MS.gene47072:intron | 25.0% |
| ! | ACACATAAGATAAAAGGAAA+GGG | - | chr6.3:15540468-15540487 | None:intergenic | 25.0% |
| ! | ACATTCATTATTCACCTTTA+AGG | + | chr6.3:15544733-15544752 | MS.gene47072:intron | 25.0% |
| ! | AGTTTCATTTCTTAACCATA+CGG | - | chr6.3:15541143-15541162 | None:intergenic | 25.0% |
| ! | ATACACGAGTAAGAAAATTA+AGG | - | chr6.3:15544926-15544945 | None:intergenic | 25.0% |
| ! | ATATACACACCTTTATCAAT+TGG | - | chr6.3:15540510-15540529 | None:intergenic | 25.0% |
| ! | ATATTTAAGTAATCTTTGGG+AGG | - | chr6.3:15540547-15540566 | None:intergenic | 25.0% |
| ! | ATCAACTCTTATACTATTGT+TGG | + | chr6.3:15541247-15541266 | MS.gene47072:intron | 25.0% |
| ! | ATGTGATGCATAAAAAGTAA+GGG | + | chr6.3:15541713-15541732 | MS.gene47072:intron | 25.0% |
| ! | ATTGAATATGCCTTAAAGTT+TGG | - | chr6.3:15544248-15544267 | None:intergenic | 25.0% |
| ! | CAAAATTGAAGTGAATGAAA+AGG | - | chr6.3:15544618-15544637 | None:intergenic | 25.0% |
| ! | CAAGAATAAATATGCCAATA+TGG | - | chr6.3:15543169-15543188 | None:intergenic | 25.0% |
| ! | CAATAAAATCTAAAAAAGGC+CGG | + | chr6.3:15543123-15543142 | MS.gene47072:intron | 25.0% |
| ! | CCAATCTGTCTAATTTAAAT+AGG | + | chr6.3:15542027-15542046 | MS.gene47072:intron | 25.0% |
| ! | CCTATTTAAATTAGACAGAT+TGG | - | chr6.3:15542030-15542049 | None:intergenic | 25.0% |
| ! | CTCAATAATAGAACTAACAT+GGG | + | chr6.3:15543038-15543057 | MS.gene47072:intron | 25.0% |
| ! | GAAAGATGTGAAATAATTAG+AGG | + | chr6.3:15543190-15543209 | MS.gene47072:intron | 25.0% |
| ! | GAAGAAATGAAGTTAATTAC+AGG | - | chr6.3:15544510-15544529 | None:intergenic | 25.0% |
| ! | GAGTAGTTCAAAATAAATTG+AGG | - | chr6.3:15540171-15540190 | None:intergenic | 25.0% |
| ! | GTCCATATTTAAGTAATCTT+TGG | - | chr6.3:15540551-15540570 | None:intergenic | 25.0% |
| ! | GTGACAAAGTTTAAGAAAAT+TGG | + | chr6.3:15542340-15542359 | MS.gene47072:intron | 25.0% |
| ! | TCAACTCTTATACTATTGTT+GGG | + | chr6.3:15541248-15541267 | MS.gene47072:intron | 25.0% |
| ! | TCACATCAAATATCAATTGT+TGG | + | chr6.3:15542246-15542265 | MS.gene47072:intron | 25.0% |
| ! | TCCCAAAGATTACTTAAATA+TGG | + | chr6.3:15540546-15540565 | MS.gene47072:intron | 25.0% |
| ! | TCTCAATAATAGAACTAACA+TGG | + | chr6.3:15543037-15543056 | MS.gene47072:intron | 25.0% |
| ! | TGAAAAATCGATTGCAAAAT+CGG | + | chr6.3:15544867-15544886 | MS.gene47072:intron | 25.0% |
| ! | TGAAAGCAAACTTATTTATG+TGG | + | chr6.3:15540242-15540261 | MS.gene47072:intron | 25.0% |
| ! | TTAATACTCATCCAATTCAA+CGG | + | chr6.3:15543977-15543996 | MS.gene47072:intron | 25.0% |
| ! | TTAGTTAAGGTAGTTAGAAT+TGG | + | chr6.3:15541341-15541360 | MS.gene47072:intron | 25.0% |
| !! | AATATTGGTTAGGATAGTTT+AGG | + | chr6.3:15540649-15540668 | MS.gene47072:intron | 25.0% |
| !! | AGGTGTGTATATTTTATCTA+TGG | + | chr6.3:15540518-15540537 | MS.gene47072:intron | 25.0% |
| !! | ATAAGACTTTGACTTTATTG+TGG | - | chr6.3:15543881-15543900 | None:intergenic | 25.0% |
| !! | ATATTGGTTAGGATAGTTTA+GGG | + | chr6.3:15540650-15540669 | MS.gene47072:intron | 25.0% |
| !! | ATTTTCTTAAACTTTGTCAC+AGG | - | chr6.3:15542340-15542359 | None:intergenic | 25.0% |
| !! | CTTTTTCTTGTAAATATGAC+CGG | - | chr6.3:15542799-15542818 | None:intergenic | 25.0% |
| !! | GCGGTAATTGAATTAAATTT+TGG | - | chr6.3:15540909-15540928 | None:intergenic | 25.0% |
| !! | GGTGTGTATATTTTATCTAT+GGG | + | chr6.3:15540519-15540538 | MS.gene47072:intron | 25.0% |
| !! | TTGTTTCTTGTAAATAGAAC+CGG | + | chr6.3:15542909-15542928 | MS.gene47072:intron | 25.0% |
| !! | TTTGAAATTTGCAAAAGATC+CGG | - | chr6.3:15543145-15543164 | None:intergenic | 25.0% |
| !!! | AAATTTTGACAACAAGTCAA+AGG | + | chr6.3:15542694-15542713 | MS.gene47072:intron | 25.0% |
| !!! | ACTTAAGTTTTAATTGAGTC+AGG | + | chr6.3:15540710-15540729 | MS.gene47072:intron | 25.0% |
| !!! | CTTTTTTTATTCTAGACTCT+TGG | + | chr6.3:15544531-15544550 | MS.gene47072:intron | 25.0% |
| !!! | GGGAGTATTTAGTTAAATAA+TGG | + | chr6.3:15542933-15542952 | MS.gene47072:intron | 25.0% |
| !!! | GTTTTTGAAAACATTGCTTA+AGG | - | chr6.3:15543803-15543822 | None:intergenic | 25.0% |
| !!! | TAAATAATGGACAGTTTGAT+TGG | + | chr6.3:15542946-15542965 | MS.gene47072:intron | 25.0% |
| !!! | TAGGGGTATTTTAAGAATAT+TGG | + | chr6.3:15542046-15542065 | MS.gene47072:intron | 25.0% |
| !!! | TTGTTGATAGTTAGTTTAGT+TGG | + | chr6.3:15541630-15541649 | MS.gene47072:intron | 25.0% |
| AAAAAGAAAAGGATAAGGAC+AGG | + | chr6.3:15540948-15540967 | MS.gene47072:intron | 30.0% | |
| AAAAGGATGTTATAGAGTGA+TGG | + | chr6.3:15543251-15543270 | MS.gene47072:intron | 30.0% | |
| AAAATTAGATGCTGAATGGA+TGG | - | chr6.3:15542442-15542461 | None:intergenic | 30.0% | |
| AAGAAAGAAATTCTAACCTG+TGG | - | chr6.3:15544200-15544219 | None:intergenic | 30.0% | |
| AATAATAGAACTAACATGGG+AGG | + | chr6.3:15543041-15543060 | MS.gene47072:intron | 30.0% | |
| ACCTTTATCAATTGGAAACA+TGG | - | chr6.3:15540502-15540521 | None:intergenic | 30.0% | |
| AGCTCTTCTACATATAATGT+TGG | - | chr6.3:15543474-15543493 | None:intergenic | 30.0% | |
| ATTTAACTAAATACTCCCTC+CGG | - | chr6.3:15542931-15542950 | None:intergenic | 30.0% | |
| ATTTGCATTTATCATCCGTA+TGG | + | chr6.3:15541125-15541144 | MS.gene47072:intron | 30.0% | |
| CAAATCAAATACTTCGTATG+TGG | - | chr6.3:15543097-15543116 | None:intergenic | 30.0% | |
| CACACATAAGATAAAAGGAA+AGG | - | chr6.3:15540469-15540488 | None:intergenic | 30.0% | |
| GAAGTGAATGAAAAGGTAAA+GGG | - | chr6.3:15544611-15544630 | None:intergenic | 30.0% | |
| GAGTACACACATAAGATAAA+AGG | - | chr6.3:15540474-15540493 | None:intergenic | 30.0% | |
| GATATTGAAACCGAACATTA+GGG | - | chr6.3:15540372-15540391 | None:intergenic | 30.0% | |
| GTATCTCTGTGCATAAATAA+TGG | + | chr6.3:15541849-15541868 | MS.gene47072:intron | 30.0% | |
| TACTCGTAATGAGTGAATAT+TGG | + | chr6.3:15540634-15540653 | MS.gene47072:intron | 30.0% | |
| TCCATGTTTCCAATTGATAA+AGG | + | chr6.3:15540498-15540517 | MS.gene47072:intron | 30.0% | |
| TGAAGTGAATGAAAAGGTAA+AGG | - | chr6.3:15544612-15544631 | None:intergenic | 30.0% | |
| TGAGTGAAAACCAAACTTTA+AGG | + | chr6.3:15544235-15544254 | MS.gene47072:intron | 30.0% | |
| TGATATTGAAACCGAACATT+AGG | - | chr6.3:15540373-15540392 | None:intergenic | 30.0% | |
| TGCAAATTTCAAACCCATAT+TGG | + | chr6.3:15543152-15543171 | MS.gene47072:intron | 30.0% | |
| TGTGTATACATATCCACATT+TGG | + | chr6.3:15542531-15542550 | MS.gene47072:intron | 30.0% | |
| TTCTACAGAAAGAATCTTCT+TGG | + | chr6.3:15541100-15541119 | MS.gene47072:intron | 30.0% | |
| TTTATAATCCAGATTACACG+TGG | - | chr6.3:15542759-15542778 | None:intergenic | 30.0% | |
| ! | AGTCTCATTTGTTCGATTTT+AGG | + | chr6.3:15544029-15544048 | MS.gene47072:intron | 30.0% |
| ! | CTACATTTTGTTGAGATAAC+TGG | + | chr6.3:15541295-15541314 | MS.gene47072:intron | 30.0% |
| ! | GAGATAACAATACTTTTCCA+AGG | - | chr6.3:15544574-15544593 | None:intergenic | 30.0% |
| ! | GTAATGAGTGAATATTGGTT+AGG | + | chr6.3:15540639-15540658 | MS.gene47072:intron | 30.0% |
| ! | GTTTTCAAAAACGAACTAGA+TGG | + | chr6.3:15543811-15543830 | MS.gene47072:intron | 30.0% |
| ! | TATACTATTGTTGGGTTTTG+AGG | + | chr6.3:15541256-15541275 | MS.gene47072:intron | 30.0% |
| ! | TTTTGAACTACTCAAGGAAA+AGG | + | chr6.3:15540178-15540197 | MS.gene47072:CDS | 30.0% |
| !! | TCAAAAATATGGCTTTGATC+AGG | + | chr6.3:15540393-15540412 | MS.gene47072:CDS | 30.0% |
| !! | TGGAAAAGTATTGTTATCTC+TGG | + | chr6.3:15544574-15544593 | MS.gene47072:CDS | 30.0% |
| !!! | ATTGATGATGTTTTCTTCGA+TGG | - | chr6.3:15545019-15545038 | None:intergenic | 30.0% |
| !!! | TCTGGTATGCTTTGTTTTAA+GGG | + | chr6.3:15543310-15543329 | MS.gene47072:intron | 30.0% |
| !!! | TTTTTTTTTTTGTGCAGCGT+GGG | + | chr6.3:15543518-15543537 | MS.gene47072:intron | 30.0% |
| AAAAAGAGATACAGAGACTG+AGG | - | chr6.3:15540746-15540765 | None:intergenic | 35.0% | |
| AAAAGAGATACAGAGACTGA+GGG | - | chr6.3:15540745-15540764 | None:intergenic | 35.0% | |
| AAAAGCAATCCATCCAAACA+CGG | - | chr6.3:15540124-15540143 | None:intergenic | 35.0% | |
| AAAATAGCATACACCGTGTT+TGG | + | chr6.3:15540108-15540127 | MS.gene47072:CDS | 35.0% | |
| AAATATGGACTTAGCCTCTA+AGG | + | chr6.3:15540561-15540580 | MS.gene47072:intron | 35.0% | |
| AACATTAGGGCTAAAGTACA+AGG | - | chr6.3:15540359-15540378 | None:intergenic | 35.0% | |
| AAGAACATATATACTCCCTC+CGG | + | chr6.3:15542777-15542796 | MS.gene47072:intron | 35.0% | |
| AATGGCAAATTATGCTCAGA+TGG | + | chr6.3:15544399-15544418 | MS.gene47072:CDS | 35.0% | |
| AATGTGTTCCTTGATTTCTG+TGG | + | chr6.3:15544373-15544392 | MS.gene47072:CDS | 35.0% | |
| AATTAGCCAAAGCCAAGATT+TGG | - | chr6.3:15543629-15543648 | None:intergenic | 35.0% | |
| AATTCCAAACTTCTCCTTAG+AGG | - | chr6.3:15540578-15540597 | None:intergenic | 35.0% | |
| ACTTGATTGAATCGCTTGAA+CGG | + | chr6.3:15543904-15543923 | MS.gene47072:intron | 35.0% | |
| AGGTGAATAATGAATGTTCC+CGG | - | chr6.3:15544730-15544749 | None:intergenic | 35.0% | |
| ATAAAAAGTAAGGGTAGCAC+TGG | + | chr6.3:15541722-15541741 | MS.gene47072:intron | 35.0% | |
| ATGTTGTCATCGAGTTTAGA+AGG | - | chr6.3:15545046-15545065 | None:intergenic | 35.0% | |
| ATTCTGTGGAGTTAAAAGAG+TGG | - | chr6.3:15541066-15541085 | None:intergenic | 35.0% | |
| ATTTGAAGGAGACTTGATGA+GGG | - | chr6.3:15545077-15545096 | None:intergenic | 35.0% | |
| CAAATGAGACTTTCAGATCA+TGG | - | chr6.3:15544020-15544039 | None:intergenic | 35.0% | |
| CAATCAGTTGAACTGAGAAT+CGG | + | chr6.3:15543836-15543855 | MS.gene47072:intron | 35.0% | |
| CACGCTGCACAAAAAAAAAA+AGG | - | chr6.3:15543519-15543538 | None:intergenic | 35.0% | |
| GAAAGTTGGAAATTGTAGTG+TGG | + | chr6.3:15540264-15540283 | MS.gene47072:intron | 35.0% | |
| GCTAGAGAAATTCACCTTAA+AGG | - | chr6.3:15544750-15544769 | None:intergenic | 35.0% | |
| GGTGTGTAACTAAAATGTCT+CGG | - | chr6.3:15543453-15543472 | None:intergenic | 35.0% | |
| GTACCTCATAAATTGCAACT+TGG | - | chr6.3:15542222-15542241 | None:intergenic | 35.0% | |
| GTTCCAAGTTGCAATTTATG+AGG | + | chr6.3:15542216-15542235 | MS.gene47072:CDS | 35.0% | |
| TAGACATCAATGTAGTTACC+AGG | + | chr6.3:15544843-15544862 | MS.gene47072:intron | 35.0% | |
| TAGTTCAACAACCGTTGAAT+TGG | - | chr6.3:15543991-15544010 | None:intergenic | 35.0% | |
| TGATGCATCAAGTGATCATT+TGG | - | chr6.3:15544484-15544503 | None:intergenic | 35.0% | |
| TGTACTTTAGCCCTAATGTT+CGG | + | chr6.3:15540359-15540378 | MS.gene47072:CDS | 35.0% | |
| TGTTTAGTGTACACCAAATG+TGG | - | chr6.3:15542547-15542566 | None:intergenic | 35.0% | |
| TTCTGTGGAGTTAAAAGAGT+GGG | - | chr6.3:15541065-15541084 | None:intergenic | 35.0% | |
| TTCTTGTAAATAGAACCGGA+GGG | + | chr6.3:15542913-15542932 | MS.gene47072:intron | 35.0% | |
| TTCTTGTAAATATGACCGGA+GGG | - | chr6.3:15542795-15542814 | None:intergenic | 35.0% | |
| TTTCTTGTAAATAGAACCGG+AGG | + | chr6.3:15542912-15542931 | MS.gene47072:intron | 35.0% | |
| TTTCTTGTAAATATGACCGG+AGG | - | chr6.3:15542796-15542815 | None:intergenic | 35.0% | |
| ! | AAGAGTTGATTGTTCGATGA+AGG | - | chr6.3:15541237-15541256 | None:intergenic | 35.0% |
| ! | TGTTGAGTCTAGAATGCTTA+AGG | - | chr6.3:15543281-15543300 | None:intergenic | 35.0% |
| !! | AAATGTTAACTTGTGCCTCT+GGG | + | chr6.3:15543333-15543352 | MS.gene47072:intron | 35.0% |
| !! | CATTTGTTCGATTTTAGGTC+CGG | + | chr6.3:15544034-15544053 | MS.gene47072:intron | 35.0% |
| !! | TTGCAATCGATTTTTCAACC+TGG | - | chr6.3:15544864-15544883 | None:intergenic | 35.0% |
| !! | TTTTTGGTCAATTAGCCTAG+CGG | - | chr6.3:15544772-15544791 | None:intergenic | 35.0% |
| !!! | CACGGTGTATGCTATTTTAA+AGG | - | chr6.3:15540106-15540125 | None:intergenic | 35.0% |
| !!! | CTCTGGTATGCTTTGTTTTA+AGG | + | chr6.3:15543309-15543328 | MS.gene47072:intron | 35.0% |
| !!! | CTTTTTTTTTTTGTGCAGCG+TGG | + | chr6.3:15543517-15543536 | MS.gene47072:intron | 35.0% |
| !!! | TTGTCACAGGTCTTTTTCAA+CGG | - | chr6.3:15542327-15542346 | None:intergenic | 35.0% |
| AAAGAGATACAGAGACTGAG+GGG | - | chr6.3:15540744-15540763 | None:intergenic | 40.0% | |
| AATCCAGATTACACGTGGAT+TGG | - | chr6.3:15542754-15542773 | None:intergenic | 40.0% | |
| ACTCTTGGGTGAATTTCTCT+GGG | + | chr6.3:15544546-15544565 | MS.gene47072:CDS | 40.0% | |
| AGCATTGTAGATGAGGTACA+AGG | - | chr6.3:15540335-15540354 | None:intergenic | 40.0% | |
| AGTTGGAAATTGTAGTGTGG+TGG | + | chr6.3:15540267-15540286 | MS.gene47072:intron | 40.0% | |
| CAAAACAGCATGTGTTGAGA+AGG | - | chr6.3:15542179-15542198 | None:intergenic | 40.0% | |
| CATTTGAAGGAGACTTGATG+AGG | - | chr6.3:15545078-15545097 | None:intergenic | 40.0% | |
| CTGAGAATCGGTCAATTTGT+CGG | + | chr6.3:15543848-15543867 | MS.gene47072:intron | 40.0% | |
| GACTCAACAAGTTCAATCTC+TGG | + | chr6.3:15543292-15543311 | MS.gene47072:intron | 40.0% | |
| GATGAGGTACAAGGTATGTT+TGG | - | chr6.3:15540326-15540345 | None:intergenic | 40.0% | |
| GTTGGAAATTGTAGTGTGGT+GGG | + | chr6.3:15540268-15540287 | MS.gene47072:intron | 40.0% | |
| TAGCATTCCCTTCCAAATCT+TGG | + | chr6.3:15543614-15543633 | MS.gene47072:CDS | 40.0% | |
| TAGGTCCGGTGTGAAAATAT+TGG | + | chr6.3:15544048-15544067 | MS.gene47072:intron | 40.0% | |
| TGAGAATCGGTCAATTTGTC+GGG | + | chr6.3:15543849-15543868 | MS.gene47072:intron | 40.0% | |
| TTTGAAGGAGACTTGATGAG+GGG | - | chr6.3:15545076-15545095 | None:intergenic | 40.0% | |
| ! | AGCACAGATGGATTTAGCAT+TGG | + | chr6.3:15544349-15544368 | MS.gene47072:CDS | 40.0% |
| ! | TATGTGGTTGTAGCGTTGAA+TGG | - | chr6.3:15543081-15543100 | None:intergenic | 40.0% |
| ! | TGGTTAGGATAGTTTAGGGT+TGG | + | chr6.3:15540654-15540673 | MS.gene47072:intron | 40.0% |
| ! | TTAGCCTCTAAGGAGAAGTT+TGG | + | chr6.3:15540571-15540590 | MS.gene47072:intron | 40.0% |
| ! | TTCATGATCAAGAGCACAGA+TGG | + | chr6.3:15544337-15544356 | MS.gene47072:CDS | 40.0% |
| !! | ACAAGGAAGCATTGTAGATG+AGG | - | chr6.3:15540342-15540361 | None:intergenic | 40.0% |
| !! | GAAATGTTAACTTGTGCCTC+TGG | + | chr6.3:15543332-15543351 | MS.gene47072:intron | 40.0% |
| !! | TAGTTTAGGGTTGGTACGTT+TGG | + | chr6.3:15540663-15540682 | MS.gene47072:intron | 40.0% |
| !!! | GATGGATTGCTTTTGTGGTT+TGG | + | chr6.3:15540130-15540149 | MS.gene47072:CDS | 40.0% |
| !!! | GTTTGGATGGATTGCTTTTG+TGG | + | chr6.3:15540125-15540144 | MS.gene47072:CDS | 40.0% |
| AATGGATGGACGAAAACGTG+TGG | - | chr6.3:15542428-15542447 | None:intergenic | 45.0% | |
| AGCCAAAGCCAAGATTTGGA+AGG | - | chr6.3:15543625-15543644 | None:intergenic | 45.0% | |
| CAAGTCTCCTTCAAATGTGC+CGG | + | chr6.3:15545081-15545100 | MS.gene47072:CDS | 45.0% | |
| CACAATGGGAATCATCACTG+TGG | + | chr6.3:15543561-15543580 | MS.gene47072:CDS | 45.0% | |
| CAGCACAATGCAAGTAGTTC+TGG | + | chr6.3:15544157-15544176 | MS.gene47072:intron | 45.0% | |
| CCATTCCTCCACAGAAATCA+AGG | - | chr6.3:15544384-15544403 | None:intergenic | 45.0% | |
| CCTTGATTTCTGTGGAGGAA+TGG | + | chr6.3:15544381-15544400 | MS.gene47072:CDS | 45.0% | |
| GACTCTTGGGTGAATTTCTC+TGG | + | chr6.3:15544545-15544564 | MS.gene47072:intron | 45.0% | |
| GCCAAAGCCAAGATTTGGAA+GGG | - | chr6.3:15543624-15543643 | None:intergenic | 45.0% | |
| GTGTTCCTTGATTTCTGTGG+AGG | + | chr6.3:15544376-15544395 | MS.gene47072:CDS | 45.0% | |
| TAGCATACACCGTGTTTGGA+TGG | + | chr6.3:15540112-15540131 | MS.gene47072:CDS | 45.0% | |
| TCCCTTCCAAATCTTGGCTT+TGG | + | chr6.3:15543620-15543639 | MS.gene47072:CDS | 45.0% | |
| TCTCCAATCCACGTGTAATC+TGG | + | chr6.3:15542748-15542767 | MS.gene47072:intron | 45.0% | |
| TGATTGAATCGCTTGAACGG+TGG | + | chr6.3:15543907-15543926 | MS.gene47072:intron | 45.0% | |
| ! | ACTGTGGTGTGGATTACTGT+TGG | + | chr6.3:15543577-15543596 | MS.gene47072:CDS | 45.0% |
| ! | GTGAATTTCTCTGGGAACCT+TGG | + | chr6.3:15544554-15544573 | MS.gene47072:CDS | 45.0% |
| !!! | AGATATTTTTATTTTTATTT+TGG | + | chr6.3:15541746-15541765 | MS.gene47072:intron | 5.0% |
| GCAACGTCATTTGCAGCTAC+AGG | - | chr6.3:15542157-15542176 | None:intergenic | 50.0% | |
| GGTGAATTTCTCTAGCCGCT+AGG | + | chr6.3:15544754-15544773 | MS.gene47072:intron | 50.0% | |
| GTCCTTAACTAGTGTCCCAG+AGG | - | chr6.3:15543351-15543370 | None:intergenic | 50.0% | |
| TGAATCGCTTGAACGGTGGT+CGG | + | chr6.3:15543911-15543930 | MS.gene47072:intron | 50.0% | |
| TGGGAATCATCACTGTGGTG+TGG | + | chr6.3:15543566-15543585 | MS.gene47072:CDS | 50.0% | |
| !! | CACGTGGATTGGAGAGACTT+TGG | - | chr6.3:15542743-15542762 | None:intergenic | 50.0% |
| !! | TGCCTCTGGGACACTAGTTA+AGG | + | chr6.3:15543346-15543365 | MS.gene47072:intron | 50.0% |
| GTCTCCTTCAAATGTGCCGG+TGG | + | chr6.3:15545084-15545103 | MS.gene47072:CDS | 55.0% | |
| TCAGCCACCGGCACATTTGA+AGG | - | chr6.3:15545091-15545110 | None:intergenic | 55.0% | |
| TTCCCGGTGAGCTAAGCTCA+CGG | - | chr6.3:15544714-15544733 | None:intergenic | 55.0% | |
| TTCCCGTGAGCTTAGCTCAC+CGG | + | chr6.3:15544708-15544727 | MS.gene47072:intron | 55.0% | |
| TCCCGGTGAGCTAAGCTCAC+GGG | - | chr6.3:15544713-15544732 | None:intergenic | 60.0% | |
| TCCCGTGAGCTTAGCTCACC+GGG | + | chr6.3:15544709-15544728 | MS.gene47072:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 15540075 | 15545120 | 15540075 | ID=MS.gene47072 |
| chr6.3 | mRNA | 15540075 | 15545120 | 15540075 | ID=MS.gene47072.t1;Parent=MS.gene47072 |
| chr6.3 | exon | 15540075 | 15540199 | 15540075 | ID=MS.gene47072.t1.exon1;Parent=MS.gene47072.t1 |
| chr6.3 | CDS | 15540075 | 15540199 | 15540075 | ID=cds.MS.gene47072.t1;Parent=MS.gene47072.t1 |
| chr6.3 | exon | 15540282 | 15540414 | 15540282 | ID=MS.gene47072.t1.exon2;Parent=MS.gene47072.t1 |
| chr6.3 | CDS | 15540282 | 15540414 | 15540282 | ID=cds.MS.gene47072.t1;Parent=MS.gene47072.t1 |
| chr6.3 | exon | 15542148 | 15542237 | 15542148 | ID=MS.gene47072.t1.exon3;Parent=MS.gene47072.t1 |
| chr6.3 | CDS | 15542148 | 15542237 | 15542148 | ID=cds.MS.gene47072.t1;Parent=MS.gene47072.t1 |
| chr6.3 | exon | 15543535 | 15543659 | 15543535 | ID=MS.gene47072.t1.exon4;Parent=MS.gene47072.t1 |
| chr6.3 | CDS | 15543535 | 15543659 | 15543535 | ID=cds.MS.gene47072.t1;Parent=MS.gene47072.t1 |
| chr6.3 | exon | 15544160 | 15544202 | 15544160 | ID=MS.gene47072.t1.exon5;Parent=MS.gene47072.t1 |
| chr6.3 | CDS | 15544160 | 15544202 | 15544160 | ID=cds.MS.gene47072.t1;Parent=MS.gene47072.t1 |
| chr6.3 | exon | 15544325 | 15544442 | 15544325 | ID=MS.gene47072.t1.exon6;Parent=MS.gene47072.t1 |
| chr6.3 | CDS | 15544325 | 15544442 | 15544325 | ID=cds.MS.gene47072.t1;Parent=MS.gene47072.t1 |
| chr6.3 | exon | 15544546 | 15544595 | 15544546 | ID=MS.gene47072.t1.exon7;Parent=MS.gene47072.t1 |
| chr6.3 | CDS | 15544546 | 15544595 | 15544546 | ID=cds.MS.gene47072.t1;Parent=MS.gene47072.t1 |
| chr6.3 | exon | 15544965 | 15545120 | 15544965 | ID=MS.gene47072.t1.exon8;Parent=MS.gene47072.t1 |
| chr6.3 | CDS | 15544965 | 15545120 | 15544965 | ID=cds.MS.gene47072.t1;Parent=MS.gene47072.t1 |
| Gene Sequence |
| Protein sequence |
