AlfalfaGEDB | MS.gene47072

M. sativa cultivar XinJiangDaYe / MS.gene47072

KEGG: K12386
GO: -
PFAM: PF04193.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47072.t1	XP_013451347.1	98.2	279	5	0	1	279	1	279	9.80E-151	542.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47072.t1	P57758	61.9	265	99	2	5	269	3	265	7.0e-89	328.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47072.t1	A0A072U6W8	98.2	279	5	0	1	279	1	279	7.0e-151	542.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene051582	MS.gene47072	0.824247	8.95E-54	-1.69E-46
MS.gene053330	MS.gene47072	0.829585	4.74E-55	-1.69E-46
MS.gene054102	MS.gene47072	0.803869	2.84E-49	-1.69E-46
MS.gene05553	MS.gene47072	0.821758	3.41E-53	-1.69E-46
MS.gene056723	MS.gene47072	0.823503	1.34E-53	-1.69E-46
MS.gene058142	MS.gene47072	0.824628	7.28E-54	-1.69E-46
MS.gene058276	MS.gene47072	0.802736	4.87E-49	-1.69E-46
MS.gene059247	MS.gene47072	0.8147	1.35E-51	-1.69E-46
MS.gene059868	MS.gene47072	0.802562	5.29E-49	-1.69E-46
MS.gene060083	MS.gene47072	0.807967	3.90E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47072.t1	MTR_6g022180	98.208	279	5	0	1	279	1	279	0.0	559
MS.gene47072.t1	MTR_0018s0320	62.319	276	102	2	5	279	3	277	1.83e-130	371
MS.gene47072.t1	MTR_0018s0310	61.455	275	99	2	5	279	3	270	1.17e-118	341
MS.gene47072.t1	MTR_6g022210	59.851	269	106	1	4	272	2	268	1.06e-114	331
MS.gene47072.t1	MTR_6g022190	58.755	257	106	0	5	261	3	259	2.40e-108	315

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47072.t1	AT5G40670	61.887	265	99	2	5	269	3	265	2.39e-118	340

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Find 47 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCAATCCATCCAAACA+CGG	0.666967	6.3:-15540121	None:intergenic
AAAATAGCATACACCGTGTT+TGG	0.343855	6.3:+15540108	MS.gene47072:CDS
AAATATATCTCACTTAAAGA+TGG	0.509564	6.3:-15543650	None:intergenic
AACATTAGGGCTAAAGTACA+AGG	0.554362	6.3:-15540356	None:intergenic
AACTATCAAATATATTCCAC+AGG	0.552047	6.3:+15544181	MS.gene47072:CDS
AATGGCAAATTATGCTCAGA+TGG	0.570881	6.3:+15544399	MS.gene47072:CDS
AATGTGTTCCTTGATTTCTG+TGG	0.579157	6.3:+15544373	MS.gene47072:CDS
AATTAGCCAAAGCCAAGATT+TGG	0.350379	6.3:-15543626	None:intergenic
ACAAGGAAGCATTGTAGATG+AGG	0.601889	6.3:-15540339	None:intergenic
ACTCTTGGGTGAATTTCTCT+GGG	0.540084	6.3:+15544546	MS.gene47072:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAGAAAAGGATAAGGAC+AGG	+	chr6.3:15540948-15540967	MS.gene47072:intron	30.0%
AAAAGGATGTTATAGAGTGA+TGG	+	chr6.3:15543251-15543270	MS.gene47072:intron	30.0%
AAAATTAGATGCTGAATGGA+TGG	-	chr6.3:15542442-15542461	None:intergenic	30.0%
AAGAAAGAAATTCTAACCTG+TGG	-	chr6.3:15544200-15544219	None:intergenic	30.0%
AATAATAGAACTAACATGGG+AGG	+	chr6.3:15543041-15543060	MS.gene47072:intron	30.0%
ACCTTTATCAATTGGAAACA+TGG	-	chr6.3:15540502-15540521	None:intergenic	30.0%
AGCTCTTCTACATATAATGT+TGG	-	chr6.3:15543474-15543493	None:intergenic	30.0%
ATTTAACTAAATACTCCCTC+CGG	-	chr6.3:15542931-15542950	None:intergenic	30.0%
ATTTGCATTTATCATCCGTA+TGG	+	chr6.3:15541125-15541144	MS.gene47072:intron	30.0%
CAAATCAAATACTTCGTATG+TGG	-	chr6.3:15543097-15543116	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.3	gene	15540075	15545120	15540075	ID=MS.gene47072
chr6.3	mRNA	15540075	15545120	15540075	ID=MS.gene47072.t1;Parent=MS.gene47072
chr6.3	exon	15540075	15540199	15540075	ID=MS.gene47072.t1.exon1;Parent=MS.gene47072.t1
chr6.3	CDS	15540075	15540199	15540075	ID=cds.MS.gene47072.t1;Parent=MS.gene47072.t1
chr6.3	exon	15540282	15540414	15540282	ID=MS.gene47072.t1.exon2;Parent=MS.gene47072.t1
chr6.3	CDS	15540282	15540414	15540282	ID=cds.MS.gene47072.t1;Parent=MS.gene47072.t1
chr6.3	exon	15542148	15542237	15542148	ID=MS.gene47072.t1.exon3;Parent=MS.gene47072.t1
chr6.3	CDS	15542148	15542237	15542148	ID=cds.MS.gene47072.t1;Parent=MS.gene47072.t1
chr6.3	exon	15543535	15543659	15543535	ID=MS.gene47072.t1.exon4;Parent=MS.gene47072.t1
chr6.3	CDS	15543535	15543659	15543535	ID=cds.MS.gene47072.t1;Parent=MS.gene47072.t1
chr6.3	exon	15544160	15544202	15544160	ID=MS.gene47072.t1.exon5;Parent=MS.gene47072.t1
chr6.3	CDS	15544160	15544202	15544160	ID=cds.MS.gene47072.t1;Parent=MS.gene47072.t1
chr6.3	exon	15544325	15544442	15544325	ID=MS.gene47072.t1.exon6;Parent=MS.gene47072.t1
chr6.3	CDS	15544325	15544442	15544325	ID=cds.MS.gene47072.t1;Parent=MS.gene47072.t1
chr6.3	exon	15544546	15544595	15544546	ID=MS.gene47072.t1.exon7;Parent=MS.gene47072.t1
chr6.3	CDS	15544546	15544595	15544546	ID=cds.MS.gene47072.t1;Parent=MS.gene47072.t1
chr6.3	exon	15544965	15545120	15544965	ID=MS.gene47072.t1.exon8;Parent=MS.gene47072.t1
chr6.3	CDS	15544965	15545120	15544965	ID=cds.MS.gene47072.t1;Parent=MS.gene47072.t1

Gene Sequence

>MS.gene47072

ATGGAGGAGATAGCTTGGAACTCTGAAACCTTTAAAATAGCATACACCGTGTTTGGATGGATTGCTTTTGTGGTTTGGTCTAGTAGTTTTTATCCTCAATTTATTTTGAACTACTCAAGGAAAAGGTATAATCACTTTTTGTTATCTTATTATTTAAGGTTTTCTCTTGAAAGCAAACTTATTTATGTGGAAAGTTGGAAATTGTAGTGTGGTGGGATTGAACTTCAACTATTTGATATTGAACAATACCAAACATACCTTGTACCTCATCTACAATGCTTCCTTGTACTTTAGCCCTAATGTTCGGTTTCAATATCATCAAAAATATGGCTTTGATCAGGTATTTAATCATTTATTTCATCAATTCATCACTTTTTTTCTTTCTCTCTTCCCTTTCCTTTTATCTTATGTGTGTACTCATTTTCCATGTTTCCAATTGATAAAGGTGTGTATATTTTATCTATGGGAACCTCCCAAAGATTACTTAAATATGGACTTAGCCTCTAAGGAGAAGTTTGGAATTAACTATACTTTATGATAACTCATTAAGTAAGATATGTACTCGTAATGAGTGAATATTGGTTAGGATAGTTTAGGGTTGGTACGTTTGGTATGTTTTTTCATGATGTACTCTCACTTAAGTTTTAATTGAGTCAGGTCTTATGTCCCCTCAGTCTCTGTATCTCTTTTTCTATATTTATTATATTTGTTTGATTGACCTAAAAAAAATTAACTAAGATATGAATTATATTATTACTTGATAAATTAGTAGTAATTATGTGTTTATGAAAAATAGAAGCATAGAAAGTACTAGTATTTTCAATTTATGTACCAAAATTTAATTCAATTACCGCTTATGAAAAATGTAATAAGAAAAAGAAAAGGATAAGGACAGGTATTCTAAGAAATTGTAGTATAAAAAAGAAAAAGAATAAACATATTAGATATTTTTTTGGTAGAATAATAAACATATTAGATAACTTGTGGCCCACTCTTTTAACTCCACAGAATCTTTTTTTTTTTTTTTCTACAGAAAGAATCTTCTTGGTTATTTGCATTTATCATCCGTATGGTTAAGAAATGAAACTAGAGTGAAAAATTAGAAGATGTTTTAGATATTTGGCATATAAGAGAAAATGAAAAGAAAGAACGTCTGAATCCTTCATCGAACAATCAACTCTTATACTATTGTTGGGTTTTGAGGAGAAGCGAGTTAAACACTACATTTTGTTGAGATAACTGGAGTTAGTGTTAAGATAATTAGAGTTAGTTAAGGTAGTTAGAATTGGTTAAATGTTAATTAGAACTATAGTTAGTTACACTTATTATTTCTGATACATTTTAACCCAAAATATTAAAACATTGAGTTTATAAGTCATTTCACTTTATAATTAATGTTCCATACTCATATTTTTATTCAATATAAAACTTCTATATCACACTTACTACGTAACACTAGTTTGATCGAATAAAATAAGAGAGAAAAGTTAAAGTATAATGATAAATGATAAACACATATGATAAAGTAATAATTCAGTTACGTAGTTATTAGACTTTGTTGATAGTTAGTTTAGTTGGTTGATACTCAATGAACTATATAGAGCATTTTGCACACATTTCACATATCTTTATTTCAAAATGTGATGCATAAAAAGTAAGGGTAGCACTGGAAGATATTTTTATTTTTATTTTGGTTTGTTTGGTTTAGAAATGAAATTCAGAGAAAAAAATGATAGAAAATAAAGTAAAATGAAATAAAATAAGTTGAAAATGAGTATCTCTGTGCATAAATAATGGATGACAAAACTCTCTCAAGAAATTTACAAATTTTGAAAAATATAGGGATCCAATATGTAAAATTCAAGAAAAAAAAAGGGAACTAACATGTCAATTTTGAAATGTGTAGTCACAAATTTGCATAATTTAAAAGAATTGTGAGTACTTGCTTTTTTCCAATCTGTCTAATTTAAATAGGGGTATTTTAAGAATATTGGTGTAGTTTTAGCTCAAAAAATCTACATTTAAGCAAATGAGTAATAAATATTTTGGTTCTTAATTTCTTTGCTATTGCAGATGATACCTGTAGCTGCAAATGACGTTGCCTTCTCAACACATGCTGTTTTGTTGACGTTAGCGTTATTGTTCCAAGTTGCAATTTATGAGGTACTGTTTCACATCAAATATCAATTGTTGGATAGATATTTTTACCAAAAAATATTGTTTGGATTTATCATTATATACAAGTTGGACCGTTGAAAAAGACCTGTGACAAAGTTTAAGAAAATTGGCATAGTATTAAATCGTAGCGTGACATTTTTTTTTTGAAATAACGTAGCGTGACATTTGAATACCACACGTTTTCGTCCATCCATTCAGCATCTAATTTTATATCTATATATCTCTTCCTATAATTTCATCAACATATTACATCATTCTCATTTTTTTCTTCATTTCAATGTGTATACATATCCACATTTGGTGTACACTAAACATTTTCCTATTTAATTTGGTAATAATAATTGATATCATTTTTTACATGTTTATCGTTCAAAAATAGAGTTAATTTATGTTTCCATCGCATATATTTTTTTTAAAAGGCCAAAGATAATTTCATTAATAAAATTTTGACAACAAGTCAAAGGTCAAAACTGTAAAAACAATGCATCCAAAGTCTCTCCAATCCACGTGTAATCTGGATTATAAAGAACATATATACTCCCTCCGGTCATATTTACAAGAAAAAGTTGACTTTTTTAGATATATTGAATAATTTATATATATAGTCAAGAATCTATACTAGATACGTAAATTATTCAATGTGTCTAAAAAGTTAATTGTTTCTTGTAAATAGAACCGGAGGGAGTATTTAGTTAAATAATGGACAGTTTGATTGGTCTTGTCAATCAATGTGTATCATGTACAAAAGTTGAATTGTGAAAATAAATAATAAAATTAATACAATTCTCAATAATAGAACTAACATGGGAGGAAGATTGTCGATAACCATTCAACGCTACAACCACATACGAAGTATTTGATTTGATTATACAATAAAATCTAAAAAAGGCCGGATCTTTTGCAAATTTCAAACCCATATTGGCATATTTATTCTTGAGAAAGATGTGAAATAATTAGAGGTATGTTAGTAAAAATATATTTAATGTAGTTAAAAATTCAAAAGGATGTTATAGAGTGATGGCTCACCTTAAGCATTCTAGACTCAACAAGTTCAATCTCTGGTATGCTTTGTTTTAAGGGAAATGTTAACTTGTGCCTCTGGGACACTAGTTAAGGACCTTAAATTGTAAATTTTTATGAAAGTTTATATAATTAGTGCATTGAAAATTGAAAATTTAGAATACTTAAAGAGTGTCTCCGAGACATTTTAGTTACACACCAACATTATATGTAGAAGAGCTAAAATCATGATTTTATATTTTGCCTTTTTTTTTTTGTGCAGCGTGGGAATCAATCAATATCAAAAATCACAATGGGAATCATCACTGTGGTGTGGATTACTGTTGGAGTTTGTTTCTTCATAGCATTCCCTTCCAAATCTTGGCTTTGGCTAATTTCCATCTTTAAGTGAGATATATTTACTTCCATAATCTTCTATTAAGAAAAAAATTAAGGAGGAAATAAAATATTCTTAGTCAATTGACAAAATTAAAACTACAAAGCATGATGAAGAAAATAATATTTCAAATGTCATTTTTCATGTACTGCCTTAAGCAATGTTTTCAAAAACGAACTAGATGGTTCAATCAGTTGAACTGAGAATCGGTCAATTTGTCGGGTGACAACCACAATAAAGTCAAAGTCTTATAAAACTTGATTGAATCGCTTGAACGGTGGTCGGTTAATATGCTCCTTTTTTTTAAAGCATTTTAATACAAATTTATTTAATACTCATCCAATTCAACGGTTGTTGAACTAATTGAACCATGATCTGAAAGTCTCATTTGTTCGATTTTAGGTCCGGTGTGAAAATATTGGCCCTATGATGAAGGTTTAATGTCATTGAAAAACAATATTTGGTTATATTTCAATTCATATCTAACTATTGAAAATAATATTTTGTGCAGCACAATGCAAGTAGTTCTGGCAACTATCAAATATATTCCACAGGTTAGAATTTCTTTCTTTCATTCTGACTCTAATGAGTGAAAACCAAACTTTAAGGCATATTCAATTGCAATCTAAATGTTAAATGTTAATAAATTTGATCTTCAATATGATGTAAAATACAGGCATTTATGAACTTCATGATCAAGAGCACAGATGGATTTAGCATTGGAAATGTGTTCCTTGATTTCTGTGGAGGAATGGCAAATTATGCTCAGATGGTTATACAATCAATTGATCAAAGTATGTCTTTATTTCCAAATTCACATTATAGTAACATTCCAAATGATCACTTGATGCATCAATGCCTGTAATTAACTTCATTTCTTCTCTTTTTTTATTCTAGACTCTTGGGTGAATTTCTCTGGGAACCTTGGAAAAGTATTGTTATCTCTGGTAAAAATTAGTCCCTTTACCTTTTCATTCACTTCAATTTTGATTATTTAATATCTTCCTTTTTTATGTTTCTGCTTCTTAACCTACAAAATTTGCATTAGAATAATGAATGTTCCCGTGAGCTTAGCTCACCGGGAACATTCATTATTCACCTTTAAGGTGAATTTCTCTAGCCGCTAGGCTAATTGACCAAAAAAAAGAATAATGAATGTTCTAAATCGATTGCAAATTCTTTTAGCGACAAATTTAGACATCAATGTAGTTACCAGGTTGAAAAATCGATTGCAAAATCGGTCGTAAAGACAACATTTTCTTAAGCTAAAAGTGCCTTAATTTTCTTACTCGTGTATATAATGTAAACATTTTCAGGTTTGTATGTTCTTTGATCTTCTTTTCATGTGTCAACATTATGTGTTGTATCCATCGAAGAAAACATCATCAATTTCTCCTTCTAAACTCGATGACAACATCAAAGATCCCCTCATCAAGTCTCCTTCAAATGTGCCGGTGGCTGAAAATGTTTGA

Protein sequence

>MS.gene47072.t1

MEEIAWNSETFKIAYTVFGWIAFVVWSSSFYPQFILNYSRKSVVGLNFNYLILNNTKHTLYLIYNASLYFSPNVRFQYHQKYGFDQMIPVAANDVAFSTHAVLLTLALLFQVAIYERGNQSISKITMGIITVVWITVGVCFFIAFPSKSWLWLISIFNTMQVVLATIKYIPQAFMNFMIKSTDGFSIGNVFLDFCGGMANYAQMVIQSIDQNSWVNFSGNLGKVLLSLVCMFFDLLFMCQHYVLYPSKKTSSISPSKLDDNIKDPLIKSPSNVPVAENV